RADAR | Search for sensor designs | Human genes | Mouse genes | Code

Pregenerated sensors for FMN1 (Mus musculus)

Ensembl gene IDs: ENSMUSG00000044042

Ensembl transcript IDs: ENSMUST00000081349.9, ENSMUST00000099576.9, ENSMUST00000102547.10, ENSMUST00000161731.5, ENSMUST00000238883.2

Found 873 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).

Type Sensor Details
3UTR TCA 90 bp GGGTCTCAATGGAGCTGGTCAGCCCTAGGGTGTCTGGAGTTGGGCTaGGATGGAGTGGGGAGTGGAGACAAGTACGTCTGCCTAAGGACA +
Preference number: 1 (lower is better)
Translates to: GSQWSWSALGCLELG*DGVGSGDKYVCLRT
Trigger: TGTCCTTAGGCAGACGTACTTGTCTCCACTCCCCACTCCATCTCAGCCCAACTCCAGACACCCTAGGGCTGACCAGCTCCATTGAGACCC
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000099576.9
3UTR CCA 90 bp TCAATGGAGCTGGTCAGCCCTAGGGTGTCTGGAGTTGGGCTGAGATaGAGTGGGGAGTGGAGACAAGTACGTCTGCCTAAGGACAGCACA +
Preference number: 1 (lower is better)
Translates to: SMELVSPRVSGVGLR*SGEWRQVRLPKDST
Trigger: TGTGCTGTCCTTAGGCAGACGTACTTGTCTCCACTCCCCACTCCATCTCAGCCCAACTCCAGACACCCTAGGGCTGACCAGCTCCATTGA
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000099576.9
3UTR TCA 90 bp CATTATGGTCTACTTCGTGTCAACCTGCAGGATCTGCTATGGTCCTaGAGGACCAAGGGAGAGACAGTGCCACCTGTGCTGACTCATGTG +
Preference number: 1 (lower is better)
Translates to: HYGLLRVNLQDLLWS*RTKGETVPPVLTHV
Trigger: CACATGAGTCAGCACAGGTGGCACTGTCTCTCCCTTGGTCCTTCAGGACCATAGCAGATCCTGCAGGTTGACACGAAGTAGACCATAATG
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000099576.9
3UTR TCA 90 bp TCCCTTTGGGAGAGAAGGGCTGTGATATGTGAGGGAAGGGGAAGCTaGAGACAAAGTATGGGTGGAGGAAAGCTAGATCACACCAGGTGC +
Preference number: 1 (lower is better)
Translates to: SLWERRAVICEGRGS*RQSMGGGKLDHTRC
Trigger: GCACCTGGTGTGATCTAGCTTTCCTCCACCCATACTTTGTCTTCAGCTTCCCCTTCCCTCACATATCACAGCCCTTCTCTCCCAAAGGGA
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000099576.9
3UTR TCA 90 bp AGAGGTCAATGTGTCCAGCAGCGCAGGAAGCTGAGAGTCCTAGATTaGGCCTTGTCATGGCTGGTGACCTGCTGTGATGGATCAAAAGTG +
Preference number: 1 (lower is better)
Translates to: RGQCVQQRRKLRVLD*ALSWLVTCCDGSKV
Trigger: CACTTTTGATCCATCACAGCAGGTCACCAGCCATGACAAGGCTCAATCTAGGACTCTCAGCTTCCTGCGCTGCTGGACACATTGACCTCT
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000099576.9
3UTR GCA 90 bp CCAACACACAACATTATGGTCTACTTCGTGTCAACCTGCAGGATCTaGTATGGTCCTGAAGGACCAAGGGAGAGACAGTGCCACCTGTGC +
Preference number: 1 (lower is better)
Translates to: PTHNIMVYFVSTCRI*YGPEGPRERQCHLC
Trigger: GCACAGGTGGCACTGTCTCTCCCTTGGTCCTTCAGGACCATAGCAGATCCTGCAGGTTGACACGAAGTAGACCATAATGTTGTGTGTTGG
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000099576.9
3UTR GCA 90 bp GGCAAAGGGGGCTGGAGAAATGGTTCAGGGGTTACCAGTATTCGTTaGTCTTGCAGAGGATCCAGGTTTGCTCCTAGCACTCACACAGTA +
Preference number: 1 (lower is better)
Translates to: GKGGWRNGSGVTSIR*SCRGSRFAPSTHTV
Trigger: TACTGTGTGAGTGCTAGGAGCAAACCTGGATCCTCTGCAAGAGCAACGAATACTGGTAACCCCTGAACCATTTCTCCAGCCCCCTTTGCC
52% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000099576.9
3UTR TCA 90 bp ACTAGAATCCAAACTCTGGCCATCTACAGGAAGGCTTTGTACTCCTaGCCCTCAAGCCATCTCTGCAGCACCCTTAACCCAACAAAGAGC +
Preference number: 1 (lower is better)
Translates to: TRIQTLAIYRKALYS*PSSHLCSTLNPTKS
Trigger: GCTCTTTGTTGGGTTAAGGGTGCTGCAGAGATGGCTTGAGGGTCAGGAGTACAAAGCCTTCCTGTAGATGGCCAGAGTTTGGATTCTAGT
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000099576.9
3UTR GCA 90 bp CCTGGTCCCTCACCCAAATGGGTCCTCTTGATCCAAGTTTGTCCTTaGCTCATTTCTATTAGAAGTTGGTACAGAATGCCTACTGGCCAG +
Preference number: 1 (lower is better)
Translates to: PGPSPKWVLLIQVCP*LISIRSWYRMPTGQ
Trigger: CTGGCCAGTAGGCATTCTGTACCAACTTCTAATAGAAATGAGGCAAGGACAAACTTGGATCAAGAGGACCCATTTGGGTGAGGGACCAGG
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000099576.9
3UTR GCA 90 bp GCTGGAACACAGGGTGTGAGAGGACTATGGGACATTTGGTGTCTATaGTGTAGAGGTAAAGGGTATCTGGGTCCAATAGAAGCTGCAAAG +
Preference number: 1 (lower is better)
Translates to: AGTQGVRGLWDIWCL*CRGKGYLGPIEAAK
Trigger: CTTTGCAGCTTCTATTGGACCCAGATACCCTTTACCTCTACAGCATAGACACCAAATGTCCCATAGTCCTCTCACACCCTGTGTTCCAGC
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000099576.9
3UTR CCA 90 bp AGGTTCTATCTTGAGATGGATGATAGGCAAAGGGGGCTGGAGAAATaGTTCAGGGGTTACCAGTATTCGTTGCTCTTGCAGAGGATCCAG +
Preference number: 1 (lower is better)
Translates to: RFYLEMDDRQRGLEK*FRGYQYSLLLQRIQ
Trigger: CTGGATCCTCTGCAAGAGCAACGAATACTGGTAACCCCTGAACCATTTCTCCAGCCCCCTTTGCCTATCATCCATCTCAAGATAGAACCT
49% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000099576.9
3UTR CCA 90 bp TCTGTCCAAACACTGAAGGCTGGAACACAGGGTGTGAGAGGACTATaGGACATTTGGTGTCTATGCTGTAGAGGTAAAGGGTATCTGGGT +
Preference number: 1 (lower is better)
Translates to: SVQTLKAGTQGVRGL*DIWCLCCRGKGYLG
Trigger: ACCCAGATACCCTTTACCTCTACAGCATAGACACCAAATGTCCCATAGTCCTCTCACACCCTGTGTTCCAGCCTTCAGTGTTTGGACAGA
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000099576.9
3UTR GCA 90 bp ACAAGGGACCACAGAGTAAAGGATGTCTGCAAGTGGAATTTGCCCTaGTGGTTAAGTCTCTTGCTCTTCCTCGAGGTGAGAATGATGAGA +
Preference number: 1 (lower is better)
Translates to: TRDHRVKDVCKWNLP*WLSLLLFLEVRMMR
Trigger: TCTCATCATTCTCACCTCGAGGAAGAGCAAGAGACTTAACCAGCAGGGCAAATTCCACTTGCAGACATCCTTTACTCTGTGGTCCCTTGT
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000099576.9
3UTR CCA 90 bp TTGCTGTCCACACTGGATTGGAAACCACCTGGTCCCTCACCCAAATaGGTCCTCTTGATCCAAGTTTGTCCTTGCCTCATTTCTATTAGA +
Preference number: 1 (lower is better)
Translates to: LLSTLDWKPPGPSPK*VLLIQVCPCLISIR
Trigger: TCTAATAGAAATGAGGCAAGGACAAACTTGGATCAAGAGGACCCATTTGGGTGAGGGACCAGGTGGTTTCCAATCCAGTGTGGACAGCAA
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000099576.9
3UTR CCA 90 bp AGGGACCACAGAGTAAAGGATGTCTGCAAGTGGAATTTGCCCTGCTaGTTAAGTCTCTTGCTCTTCCTCGAGGTGAGAATGATGAGAAAC +
Preference number: 1 (lower is better)
Translates to: RDHRVKDVCKWNLPC*LSLLLFLEVRMMRN
Trigger: GTTTCTCATCATTCTCACCTCGAGGAAGAGCAAGAGACTTAACCAGCAGGGCAAATTCCACTTGCAGACATCCTTTACTCTGTGGTCCCT
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000099576.9
3UTR CCA 90 bp AGAGACTGCTGGTCAGACGTGAAATACTTAGGTTCTATCTTGAGATaGATGATAGGCAAAGGGGGCTGGAGAAATGGTTCAGGGGTTACC +
Preference number: 1 (lower is better)
Translates to: RDCWSDVKYLGSILR*MIGKGGWRNGSGVT
Trigger: GGTAACCCCTGAACCATTTCTCCAGCCCCCTTTGCCTATCATCCATCTCAAGATAGAACCTAAGTATTTCACGTCTGACCAGCAGTCTCT
48% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000099576.9
3UTR CCA 90 bp ACACTGAAGGCTGGAACACAGGGTGTGAGAGGACTATGGGACATTTaGTGTCTATGCTGTAGAGGTAAAGGGTATCTGGGTCCAATAGAA +
Preference number: 1 (lower is better)
Translates to: TLKAGTQGVRGLWDI*CLCCRGKGYLGPIE
Trigger: TTCTATTGGACCCAGATACCCTTTACCTCTACAGCATAGACACCAAATGTCCCATAGTCCTCTCACACCCTGTGTTCCAGCCTTCAGTGT
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000099576.9
3UTR CCA 90 bp ATCACACCAGGTGCTGGGATGCTTAGAAGGAACAGTAAGGTCCTTTaGCAAGTGACACTTGTAACAGAATCTGAAGCTGGAAGTTCCTCA +
Preference number: 1 (lower is better)
Translates to: ITPGAGMLRRNSKVL*QVTLVTESEAGSSS
Trigger: TGAGGAACTTCCAGCTTCAGATTCTGTTACAAGTGTCACTTGCCAAAGGACCTTACTGTTCCTTCTAAGCATCCCAGCACCTGGTGTGAT
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000099576.9
3UTR GCA 90 bp CTAGAGCCTGTTTATTCCCTGTTGAATCCTTGGGATGTTCACTTCTaGCCAAGAATACTGACTCATTTGTGCTTTGGCAGCCCAGTGATA +
Preference number: 1 (lower is better)
Translates to: LEPVYSLLNPWDVHF*PRILTHLCFGSPVI
Trigger: TATCACTGGGCTGCCAAAGCACAAATGAGTCAGTATTCTTGGGCAGAAGTGAACATCCCAAGGATTCAACAGGGAATAAACAGGCTCTAG
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000099576.9
3UTR TCA 90 bp ACTGGCCAGGAAGCCATATTAACTGAGCAGGCCTATCTCAATAGCTaGTGCTCACTTCCAGCATCAAAACTTCTTCTCCAGATTAAGGTT +
Preference number: 1 (lower is better)
Translates to: TGQEAILTEQAYLNS*CSLPASKLLLQIKV
Trigger: AACCTTAATCTGGAGAAGAAGTTTTGATGCTGGAAGTGAGCATCAGCTATTGAGATAGGCCTGCTCAGTTAATATGGCTTCCTGGCCAGT
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000099576.9
3UTR GCA 90 bp AAGAGTAGTGAAGACCTTCCAAAATCTGTGCAGAACCACAGAGACTaGTGGTCAGACGTGAAATACTTAGGTTCTATCTTGAGATGGATG +
Preference number: 1 (lower is better)
Translates to: KSSEDLPKSVQNHRD*WSDVKYLGSILRWM
Trigger: CATCCATCTCAAGATAGAACCTAAGTATTTCACGTCTGACCAGCAGTCTCTGTGGTTCTGCACAGATTTTGGAAGGTCTTCACTACTCTT
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000099576.9
3UTR TCA 90 bp AATGGAGAATGTAATAATGAGAGCTCCTACCAAGGTGTCAACAGCTaGCAGGAAAGCAGGAGTGACACAAAATGTGTCTTTTGGTCACAT +
Preference number: 1 (lower is better)
Translates to: NGECNNESSYQGVNS*QESRSDTKCVFWSH
Trigger: ATGTGACCAAAAGACACATTTTGTGTCACTCCTGCTTTCCTGTCAGCTGTTGACACCTTGGTAGGAGCTCTCATTATTACATTCTCCATT
42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000099576.9
3UTR GCA 90 bp GTGCTAAGAAAAACCAAACCAAGCCAACCCATAAGTGACTTGAAGTaGCTTACATTTCTGCAGCATCTGACTCGTATTAGGATGCTAACT +
Preference number: 1 (lower is better)
Translates to: VLRKTKPSQPISDLK*LTFLQHLTRIRMLT
Trigger: AGTTAGCATCCTAATACGAGTCAGATGCTGCAGAAATGTAAGGCACTTCAAGTCACTTATGGGTTGGCTTGGTTTGGTTTTTCTTAGCAC
42% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000099576.9
3UTR CCA 90 bp TTGGGATGTTCACTTCTGCCCAAGAATACTGACTCATTTGTGCTTTaGCAGCCCAGTGATATCACGTTTCACATGAACCATGAAAAATAC +
Preference number: 1 (lower is better)
Translates to: LGCSLLPKNTDSFVL*QPSDITFHMNHEKY
Trigger: GTATTTTTCATGGTTCATGTGAAACGTGATATCACTGGGCTGCCAAAGCACAAATGAGTCAGTATTCTTGGGCAGAAGTGAACATCCCAA
42% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000099576.9
3UTR CCA 90 bp CACATCCTTAATGTGCTAGAGCCTGTTTATTCCCTGTTGAATCCTTaGGATGTTCACTTCTGCCCAAGAATACTGACTCATTTGTGCTTT +
Preference number: 1 (lower is better)
Translates to: HILNVLEPVYSLLNP*DVHFCPRILTHLCF
Trigger: AAAGCACAAATGAGTCAGTATTCTTGGGCAGAAGTGAACATCCCAAGGATTCAACAGGGAATAAACAGGCTCTAGCACATTAAGGATGTG
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000099576.9
3UTR CCA 90 bp AACTACCTTAAAACCCACTGCGTGATTCCCAGAATTGCTCATTTTTaGACATCTATTAATGATGCTATGGCTAGGCAGAGAAACCTCCCT +
Preference number: 1 (lower is better)
Translates to: NYLKTHCVIPRIAHF*TSINDAMARQRNLP
Trigger: AGGGAGGTTTCTCTGCCTAGCCATAGCATCATTAATAGATGTCCAAAAATGAGCAATTCTGGGAATCACGCAGTGGGTTTTAAGGTAGTT
42% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000099576.9
3UTR CCA 90 bp AGTAGTGAAGACCTTCCAAAATCTGTGCAGAACCACAGAGACTGCTaGTCAGACGTGAAATACTTAGGTTCTATCTTGAGATGGATGATA +
Preference number: 1 (lower is better)
Translates to: SSEDLPKSVQNHRDC*SDVKYLGSILRWMI
Trigger: TATCATCCATCTCAAGATAGAACCTAAGTATTTCACGTCTGACCAGCAGTCTCTGTGGTTCTGCACAGATTTTGGAAGGTCTTCACTACT
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000099576.9
3UTR-3UTR GCA 90 bp GCCTCTGTGATCCCAGGTGGTGCTAAGAAAAACCAAACCAAGCCAACCCATAAGAAGAGCCCCCTCCCCTaGCCCAATCCCAACACACAA +
Preference number: 2 (lower is better)
Translates to: ASVIPGGAKKNQTKPTHKKSPLP*PNPNTQ
Trigger: TTGTGTGTTGGGATTGGGGCAGGGGAGGGGGCTCTT...CTTATGGGTTGGCTTGGTTTGGTTTTTCTTAGCACCACCTGGGATCACAGAGGC
53% GC, longest homopolymer 5 nt, total homopolymer stretches 14 nt.
Matches the following 1 transcripts:
ENSMUST00000099576.9
3UTR CAA 90 bp ACATTAACAAGAGGCAGTCTCAGCAGTGTGTCTCACACAGGCTCCTaGGTGACAGTGGTGCTCTGTCCAAACACTGAAGGCTGGAACACA +
Preference number: 2 (lower is better)
Translates to: TLTRGSLSSVSHTGS*VTVVLCPNTEGWNT
Trigger: TGTGTTCCAGCCTTCAGTGTTTGGACAGAGCACCACTGTCACCAAGGAGCCTGTGTGAGACACACTGCTGAGACTGCCTCTTGTTAATGT
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000099576.9
3UTR-3UTR GCA 90 bp CAACTGTTTGGAACGCCCGGCCCAGGAGATCTAACAGCCTCCTGCTGGCTTCTATCTCATCTGCATGCCTaGATAGCATTCATTTGCTGT +
Preference number: 2 (lower is better)
Translates to: QLFGTPGPGDLTASCWLLSHLHA*IAFICC
Trigger: ACAGCAAATGAATGCTATGCAGGCATGCAGATGAGA...TAGAAGCCAGCAGGAGGCTGTTAGATCTCCTGGGCCGGGCGTTCCAAACAGTTG
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000099576.9
3UTR-3UTR CCA 90 bp AGGAAGAACCCAGACACATACAACTCTAGAACATCACGTTATTCTCTACGTGGCGGACACTGCCGGGGGTaGTGGGAGAGACAGGATACA +
Preference number: 2 (lower is better)
Translates to: RKNPDTYNSRTSRYSLRGGHCRG*WERQDT
Trigger: TGTATCCTGTCTCTCCCACCACCCCCGGCAGTGTCC...GCCACGTAGAGAATAACGTGATGTTCTAGAGTTGTATGTGTCTGGGTTCTTCCT
51% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000099576.9
3UTR-3UTR GCA 90 bp CTTAAGGTATCTGGCAAGTTCAAAGGTCCTGGAAAGTTGCTGAGGCAAGAGGTGGAAGTTGGTACAGAATaGCTACTGGCCAGGAAGCCA +
Preference number: 2 (lower is better)
Translates to: LKVSGKFKGPGKLLRQEVEVGTE*LLARKP
Trigger: TGGCTTCCTGGCCAGTAGGCATTCTGTACCAACTTC...CACCTCTTGCCTCAGCAACTTTCCAGGACCTTTGAACTTGCCAGATACCTTAAG
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000099576.9
3UTR CAA 90 bp GTACTAACAAGGGACCACAGAGTAAAGGATGTCTGCAAGTGGAATTaGCCCTGCTGGTTAAGTCTCTTGCTCTTCCTCGAGGTGAGAATG +
Preference number: 2 (lower is better)
Translates to: VLTRDHRVKDVCKWN*PCWLSLLLFLEVRM
Trigger: CATTCTCACCTCGAGGAAGAGCAAGAGACTTAACCAGCAGGGCAAATTCCACTTGCAGACATCCTTTACTCTGTGGTCCCTTGTTAGTAC
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000099576.9
3UTR CAA 90 bp AACCACAGAGACTGCTGGTCAGACGTGAAATACTTAGGTTCTATCTaGAGATGGATGATAGGCAAAGGGGGCTGGAGAAATGGTTCAGGG +
Preference number: 2 (lower is better)
Translates to: NHRDCWSDVKYLGSI*RWMIGKGGWRNGSG
Trigger: CCCTGAACCATTTCTCCAGCCCCCTTTGCCTATCATCCATCTCAAGATAGAACCTAAGTATTTCACGTCTGACCAGCAGTCTCTGTGGTT
48% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000099576.9
3UTR-3UTR TCA 90 bp GCCTCTGTGATCCCAGGTGGTGCTAAGAAAAACCAAACCAAGCCAACCCATAAGTGCATCTTAGAGACCTaGGGTAGCATCAATACCATG +
Preference number: 2 (lower is better)
Translates to: ASVIPGGAKKNQTKPTHKCILET*GSINTM
Trigger: CATGGTATTGATGCTACCTCAGGTCTCTAAGATGCA...CTTATGGGTTGGCTTGGTTTGGTTTTTCTTAGCACCACCTGGGATCACAGAGGC
48% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000099576.9
3UTR-3UTR GCA 90 bp CTTAAGGTATCTGGCAAGTTCAAAGGTCCTGGAAAGTTGCTGAGGCAAGAGGTGTTTTTGGACAGCAAATaGCCCCTGGCTACCTTCCTT +
Preference number: 2 (lower is better)
Translates to: LKVSGKFKGPGKLLRQEVFLDSK*PLATFL
Trigger: AAGGAAGGTAGCCAGGGGGCATTTGCTGTCCAAAAA...CACCTCTTGCCTCAGCAACTTTCCAGGACCTTTGAACTTGCCAGATACCTTAAG
48% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000099576.9
3UTR-3UTR CCA 90 bp AAACCACGTGACAATAACTTTCCTTCAAACCACAGAAAGACAGCTAGCACCTGTCACTGCCGGGGGTGGTaGGAGAGACAGGATACAAAT +
Preference number: 2 (lower is better)
Translates to: KPRDNNFPSNHRKTASTCHCRGW*ERQDTN
Trigger: ATTTGTATCCTGTCTCTCCCACCACCCCCGGCAGTG...ACAGGTGCTAGCTGTCTTTCTGTGGTTTGAAGGAAAGTTATTGTCACGTGGTTT
48% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000099576.9
3UTR-3UTR TCA 90 bp GCATTGTTCTTGTGGATTGACAAGAGACTTCCCAAAGAAGGCACAGGGGACTTTTGTCTGCAGGAGCAGTaGGGTGCTGTCTTTCATATT +
Preference number: 2 (lower is better)
Translates to: ALFLWIDKRLPKEGTGDFCLQEQ*GAVFHI
Trigger: AATATGAAAGACAGCACCTCACTGCTCCTGCAGACA...AAAGTCCCCTGTGCCTTCTTTGGGAAGTCTCTTGTCAATCCACAAGAACAATGC
47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000081349.9
ENSMUST00000099576.9
ENSMUST00000102547.10
3UTR-3UTR GCA 90 bp CTTAAGGTATCTGGCAAGTTCAAAGGTCCTGGAAAGTTGCTGAGGCAAGAGGTGGCAGGAGCAGTGAGGTaGTGTCTTTCATATTGTAAC +
Preference number: 2 (lower is better)
Translates to: LKVSGKFKGPGKLLRQEVAGAVR*CLSYCN
Trigger: GTTACAATATGAAAGACAGCACCTCACTGCTCCTGC...CACCTCTTGCCTCAGCAACTTTCCAGGACCTTTGAACTTGCCAGATACCTTAAG
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000099576.9
3UTR-3UTR CCA 90 bp GGATCACCATGTACCTCTTTTCTCATGACAAGGGTATATACTGGAAGGCTTAGAGGGACTTTCTGCAGATaGCCTCAGAAGGAGATGAGC +
Preference number: 2 (lower is better)
Translates to: GSPCTSFLMTRVYTGRLRGTFCR*PQKEMS
Trigger: GCTCATCTCCTTCTGAGGCCATCTGCAGAAAGTCCC...TCTAAGCCTTCCAGTATATACCCTTGTCATGAGAAAAGAGGTACATGGTGATCC
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000081349.9
ENSMUST00000099576.9
ENSMUST00000102547.10
3UTR-3UTR CCA 90 bp CCAACACAGCTCAACTATGAATTGCCATATTCATGGTCTTCTGATATTCTGCTCGCCCATGGAGGACAGTaGAGGATGTCAGACTCCCAA +
Preference number: 2 (lower is better)
Translates to: PTQLNYELPYSWSSDILLAHGGQ*RMSDSQ
Trigger: TTGGGAGTCTGACATCCTCCACTGTCCTCCATGGGC...GAGCAGAATATCAGAAGACCATGAATATGGCAATTCATAGTTGAGCTGTGTTGG
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000099576.9
3UTR CAA 90 bp AGCCTAGGCCACATCCTTAATGTGCTAGAGCCTGTTTATTCCCTGTaGAATCCTTGGGATGTTCACTTCTGCCCAAGAATACTGACTCAT +
Preference number: 2 (lower is better)
Translates to: SLGHILNVLEPVYSL*NPWDVHFCPRILTH
Trigger: ATGAGTCAGTATTCTTGGGCAGAAGTGAACATCCCAAGGATTCAACAGGGAATAAACAGGCTCTAGCACATTAAGGATGTGGCCTAGGCT
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000099576.9
3UTR-3UTR GCA 90 bp GCATTGTTCTTGTGGATTGACAAGAGACTTCCCAAAGAAGGCACAGGGGACTTTGCAGGAGCAGTGAGGTaGTGTCTTTCATATTGTAAC +
Preference number: 2 (lower is better)
Translates to: ALFLWIDKRLPKEGTGDFAGAVR*CLSYCN
Trigger: GTTACAATATGAAAGACAGCACCTCACTGCTCCTGC...AAAGTCCCCTGTGCCTTCTTTGGGAAGTCTCTTGTCAATCCACAAGAACAATGC
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000081349.9
ENSMUST00000099576.9
ENSMUST00000102547.10
3UTR-3UTR CCA 90 bp CTTAAGGTATCTGGCAAGTTCAAAGGTCCTGGAAAGTTGCTGAGGCAAGAGGTGACTAACACAAAAGCATaGCCTTTCTTTACAGCGAGG +
Preference number: 2 (lower is better)
Translates to: LKVSGKFKGPGKLLRQEVTNTKA*PFFTAR
Trigger: CCTCGCTGTAAAGAAAGGCCATGCTTTTGTGTTAGT...CACCTCTTGCCTCAGCAACTTTCCAGGACCTTTGAACTTGCCAGATACCTTAAG
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000099576.9
3UTR-3UTR CCA 90 bp GCCTCTGTGATCCCAGGTGGTGCTAAGAAAAACCAAACCAAGCCAACCCATAAGAGCATTAAAAACACTTaGGTTAAGTCCATAGGGGGA +
Preference number: 2 (lower is better)
Translates to: ASVIPGGAKKNQTKPTHKSIKNT*VKSIGG
Trigger: TCCCCCTATGGACTTAACCCAAGTGTTTTTAATGCT...CTTATGGGTTGGCTTGGTTTGGTTTTTCTTAGCACCACCTGGGATCACAGAGGC
46% GC, longest homopolymer 5 nt, total homopolymer stretches 15 nt.
Matches the following 1 transcripts:
ENSMUST00000099576.9
3UTR-3UTR CCA 90 bp ATGAATTGCCATATTCATGGTCTTCTGATATTCTGCTCACTTATAACGTCCCCTACAGCAAATGCCCCCTaGCTACCTTCCTTCATGTGC +
Preference number: 2 (lower is better)
Translates to: MNCHIHGLLIFCSLITSPTANAP*LPSFMC
Trigger: GCACATGAAGGAAGGTAGCCAGGGGGCATTTGCTGT...AGGGGACGTTATAAGTGAGCAGAATATCAGAAGACCATGAATATGGCAATTCAT
44% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000099576.9
3UTR CAA 90 bp ATTCCTGTAGTGTTCCCAAACATAACTTTGCATTGTTCTTGTGGATaGACAAGAGACTTCCCAAAGAAGGCACAGGGGACTTTCTGCAGA +
Preference number: 2 (lower is better)
Translates to: IPVVFPNITLHCSCG*TRDFPKKAQGTFCR
Trigger: TCTGCAGAAAGTCCCCTGTGCCTTCTTTGGGAAGTCTCTTGTCAATCCACAAGAACAATGCAAAGTTATGTTTGGGAACACTACAGGAAT
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000081349.9
ENSMUST00000099576.9
ENSMUST00000102547.10
3UTR CAA 90 bp TACTTAGCAGCAGCATCCCTCAAGCCAACACAGCTCAACTATGAATaGCCATATTCATGGTCTTCTGATATTCTGCTCACTTATAACGTC +
Preference number: 2 (lower is better)
Translates to: YLAAASLKPTQLNYE*PYSWSSDILLTYNV
Trigger: GACGTTATAAGTGAGCAGAATATCAGAAGACCATGAATATGGCAATTCATAGTTGAGCTGTGTTGGCTTGAGGGATGCTGCTGCTAAGTA
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000099576.9
3UTR-3UTR TCA 90 bp CTCTTGGGGATCACCATGTACCTCTTTTCTCATGACAAGGGTATATACTGGAAGATTGTTCTTGTGGATTaGCAAGAGACTTCCCAAAGA +
Preference number: 2 (lower is better)
Translates to: LLGITMYLFSHDKGIYWKIVLVD*QETSQR
Trigger: TCTTTGGGAAGTCTCTTGTCAATCCACAAGAACAAT...CTTCCAGTATATACCCTTGTCATGAGAAAAGAGGTACATGGTGATCCCCAAGAG
42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000081349.9
ENSMUST00000099576.9
ENSMUST00000102547.10
3UTR-3UTR CCA 90 bp CCAACACAGCTCAACTATGAATTGCCATATTCATGGTCTTCTGATATTCTGCTCTGGAATTTGCCCTGCTaGTTAAGTCTCTTGCTCTTC +
Preference number: 2 (lower is better)
Translates to: PTQLNYELPYSWSSDILLWNLPC*LSLLLF
Trigger: GAAGAGCAAGAGACTTAACCAGCAGGGCAAATTCCA...GAGCAGAATATCAGAAGACCATGAATATGGCAATTCATAGTTGAGCTGTGTTGG
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000099576.9
3UTR CAA 90 bp GAAACAATTACATATTCCTGTAGTGTTCCCAAACATAACTTTGCATaGTTCTTGTGGATTGACAAGAGACTTCCCAAAGAAGGCACAGGG +
Preference number: 2 (lower is better)
Translates to: ETITYSCSVPKHNFA*FLWIDKRLPKEGTG
Trigger: CCCTGTGCCTTCTTTGGGAAGTCTCTTGTCAATCCACAAGAACAATGCAAAGTTATGTTTGGGAACACTACAGGAATATGTAATTGTTTC
40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000081349.9
ENSMUST00000099576.9
ENSMUST00000102547.10
3UTR CAA 90 bp AGTGCAGACAGAACCATTTTAAGAGTTTCTTCTTCATTCATGGGTTaGTTTCCAAGAGTAGTGAAGACCTTCCAAAATCTGTGCAGAACC +
Preference number: 2 (lower is better)
Translates to: SADRTILRVSSSFMG*FPRVVKTFQNLCRT
Trigger: GGTTCTGCACAGATTTTGGAAGGTCTTCACTACTCTTGGAAACAAACCCATGAATGAAGAAGAAACTCTTAAAATGGTTCTGTCTGCACT
40% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000099576.9
3UTR CAA 90 bp TGCAAGAAACAATTACATATTCCTGTAGTGTTCCCAAACATAACTTaGCATTGTTCTTGTGGATTGACAAGAGACTTCCCAAAGAAGGCA +
Preference number: 2 (lower is better)
Translates to: CKKQLHIPVVFPNIT*HCSCGLTRDFPKKA
Trigger: TGCCTTCTTTGGGAAGTCTCTTGTCAATCCACAAGAACAATGCAAAGTTATGTTTGGGAACACTACAGGAATATGTAATTGTTTCTTGCA
38% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000081349.9
ENSMUST00000099576.9
ENSMUST00000102547.10
3UTR TCA 72 bp TGGAGCTGGTCAGCCCTAGGGTGTCTGGAGTTGGGCTaGGATGGAGTGGGGAGTGGAGACAAGTACGTCTGC +
Preference number: 3 (lower is better)
Translates to: WSWSALGCLELG*DGVGSGDKYVC
Trigger: GCAGACGTACTTGTCTCCACTCCCCACTCCATCTCAGCCCAACTCCAGACACCCTAGGGCTGACCAGCTCCA
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000099576.9
3UTR CCA 72 bp CTGGTCAGCCCTAGGGTGTCTGGAGTTGGGCTGAGATaGAGTGGGGAGTGGAGACAAGTACGTCTGCCTAAG +
Preference number: 3 (lower is better)
Translates to: LVSPRVSGVGLR*SGEWRQVRLPK
Trigger: CTTAGGCAGACGTACTTGTCTCCACTCCCCACTCCATCTCAGCCCAACTCCAGACACCCTAGGGCTGACCAG
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000099576.9
3UTR TCA 72 bp CTACTTCGTGTCAACCTGCAGGATCTGCTATGGTCCTaGAGGACCAAGGGAGAGACAGTGCCACCTGTGCTG +
Preference number: 3 (lower is better)
Translates to: LLRVNLQDLLWS*RTKGETVPPVL
Trigger: CAGCACAGGTGGCACTGTCTCTCCCTTGGTCCTTCAGGACCATAGCAGATCCTGCAGGTTGACACGAAGTAG
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000099576.9
3UTR TCA 72 bp TGTGTCCAGCAGCGCAGGAAGCTGAGAGTCCTAGATTaGGCCTTGTCATGGCTGGTGACCTGCTGTGATGGA +
Preference number: 3 (lower is better)
Translates to: CVQQRRKLRVLD*ALSWLVTCCDG
Trigger: TCCATCACAGCAGGTCACCAGCCATGACAAGGCTCAATCTAGGACTCTCAGCTTCCTGCGCTGCTGGACACA
56% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000099576.9
3UTR TCA 72 bp GGAACTCCCCGGTGGCCCTTGTGTCTGCAGGAGCAGTaGGGTGCTGTCTTTCATATTGTAACTTCCTTCTGT +
Preference number: 3 (lower is better)
Translates to: GTPRWPLCLQEQ*GAVFHIVTSFC
Trigger: ACAGAAGGAAGTTACAATATGAAAGACAGCACCTCACTGCTCCTGCAGACACAAGGGCCACCGGGGAGTTCC
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000081349.9
ENSMUST00000099576.9
ENSMUST00000102547.10
ENSMUST00000161731.5
3UTR TCA 72 bp CAAACTCTGGCCATCTACAGGAAGGCTTTGTACTCCTaGCCCTCAAGCCATCTCTGCAGCACCCTTAACCCA +
Preference number: 3 (lower is better)
Translates to: QTLAIYRKALYS*PSSHLCSTLNP
Trigger: TGGGTTAAGGGTGCTGCAGAGATGGCTTGAGGGTCAGGAGTACAAAGCCTTCCTGTAGATGGCCAGAGTTTG
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000099576.9
3UTR GCA 72 bp TGCAGCACCCTTAACCCAACAAAGAGCCCCCTCCCCTaGCCCAATCCCAACACACAACATTATGGTCTACTT +
Preference number: 3 (lower is better)
Translates to: CSTLNPTKSPLP*PNPNTQHYGLL
Trigger: AAGTAGACCATAATGTTGTGTGTTGGGATTGGGGCAGGGGAGGGGGCTCTTTGTTGGGTTAAGGGTGCTGCA
53% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000099576.9
3UTR GCA 72 bp ATGTCTTTGTGTGGTGGCATGTATGACAACTGTGTTTaGGTCTGTGCATGTGAGCACGGGTGCCCATGGAGG +
Preference number: 3 (lower is better)
Translates to: MSLCGGMYDNCV*VCACEHGCPWR
Trigger: CCTCCATGGGCACCCGTGCTCACATGCACAGACGCAAACACAGTTGTCATACATGCCACCACACAAAGACAT
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000099576.9
3UTR CCA 72 bp TGCCTGCATAGCATTCATTTGCTGTCCACACTGGATTaGAAACCACCTGGTCCCTCACCCAAATGGGTCCTC +
Preference number: 3 (lower is better)
Translates to: CLHSIHLLSTLD*KPPGPSPKWVL
Trigger: GAGGACCCATTTGGGTGAGGGACCAGGTGGTTTCCAATCCAGTGTGGACAGCAAATGAATGCTATGCAGGCA
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000099576.9
3UTR CCA 72 bp CCTGGAAAGTTGCTGAGGCAAGAGGTGGACCCCACATaGCAGCTAGAGGTAACCAGATCAGAAAACCCTACA +
Preference number: 3 (lower is better)
Translates to: PGKLLRQEVDPT*QLEVTRSENPT
Trigger: TGTAGGGTTTTCTGATCTGGTTACCTCTAGCTGCCATGTGGGGTCCACCTCTTGCCTCAGCAACTTTCCAGG
53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000099576.9
3UTR CCA 72 bp GTGTGCCACTCAGCACGAGCACTAGAATCCAAACTCTaGCCATCTACAGGAAGGCTTTGTACTCCTGACCCT +
Preference number: 3 (lower is better)
Translates to: VCHSARALESKL*PSTGRLCTPDP
Trigger: AGGGTCAGGAGTACAAAGCCTTCCTGTAGATGGCCAGAGTTTGGATTCTAGTGCTCGTGCTGAGTGGCACAC
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000099576.9
3UTR CCA 72 bp TCTGTGCATGTGAGCACGGGTGCCCATGGAGGACAGTaGAGGATGTCAGACTCCCAAGAGAGAGTAATGTTT +
Preference number: 3 (lower is better)
Translates to: SVHVSTGAHGGQ*RMSDSQERVMF
Trigger: AAACATTACTCTCTCTTGGGAGTCTGACATCCTCCACTGTCCTCCATGGGCACCCGTGCTCACATGCACAGA
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000099576.9
3UTR-3UTR CAA 90 bp CCTTGCTTCCCTCTGTCTCAGAAGGTGGAGAGAAAACACTGCAAAGGTCTCATGGCAGAGGATCCAGGTTaGCTCCTAGCACTCACACAG +
Preference number: 3 (lower is better)
Translates to: PCFPLSQKVERKHCKGLMAEDPG*LLALTQ
Trigger: CTGTGTGAGTGCTAGGAGCAAACCTGGATCCTCTGC...CATGAGACCTTTGCAGTGTTTTCTCTCCACCTTCTGAGACAGAGGGAAGCAAGG
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000099576.9
3UTR GCA 72 bp ACAAGAGACTTCCCAAAGAAGGCACAGGGGACTTTCTaGAGATGGCCTCAGAAGGAGATGAGCAAATGTCCC +
Preference number: 3 (lower is better)
Translates to: TRDFPKKAQGTF*RWPQKEMSKCP
Trigger: GGGACATTTGCTCATCTCCTTCTGAGGCCATCTGCAGAAAGTCCCCTGTGCCTTCTTTGGGAAGTCTCTTGT
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000081349.9
ENSMUST00000099576.9
ENSMUST00000102547.10
3UTR GCA 72 bp GGCTGGAGAAATGGTTCAGGGGTTACCAGTATTCGTTaGTCTTGCAGAGGATCCAGGTTTGCTCCTAGCACT +
Preference number: 3 (lower is better)
Translates to: GWRNGSGVTSIR*SCRGSRFAPST
Trigger: AGTGCTAGGAGCAAACCTGGATCCTCTGCAAGAGCAACGAATACTGGTAACCCCTGAACCATTTCTCCAGCC
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000099576.9
3UTR CCA 72 bp CCTCCTGCTGGCTTCTACAGACACCAGGCACACAGGTaGTGCACATATATACACGTAGGCAAACAGTCATAC +
Preference number: 3 (lower is better)
Translates to: PPAGFYRHQAHR*CTYIHVGKQSY
Trigger: GTATGACTGTTTGCCTACGTGTATATATGTGCACCACCTGTGTGCCTGGTGTCTGTAGAAGCCAGCAGGAGG
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000099576.9
3UTR GCA 72 bp TCCCCGGTGGCCCTTGTGTCTGCAGGAGCAGTGAGGTaGTGTCTTTCATATTGTAACTTCCTTCTGTTTTCA +
Preference number: 3 (lower is better)
Translates to: SPVALVSAGAVR*CLSYCNFLLFS
Trigger: TGAAAACAGAAGGAAGTTACAATATGAAAGACAGCACCTCACTGCTCCTGCAGACACAAGGGCCACCGGGGA
50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000081349.9
ENSMUST00000099576.9
ENSMUST00000102547.10
ENSMUST00000161731.5
3UTR CCA 72 bp ACACTGGATTGGAAACCACCTGGTCCCTCACCCAAATaGGTCCTCTTGATCCAAGTTTGTCCTTGCCTCATT +
Preference number: 3 (lower is better)
Translates to: TLDWKPPGPSPK*VLLIQVCPCLI
Trigger: AATGAGGCAAGGACAAACTTGGATCAAGAGGACCCATTTGGGTGAGGGACCAGGTGGTTTCCAATCCAGTGT
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000099576.9
3UTR CCA 72 bp CTTGAGATGGATGATAGGCAAAGGGGGCTGGAGAAATaGTTCAGGGGTTACCAGTATTCGTTGCTCTTGCAG +
Preference number: 3 (lower is better)
Translates to: LEMDDRQRGLEK*FRGYQYSLLLQ
Trigger: CTGCAAGAGCAACGAATACTGGTAACCCCTGAACCATTTCTCCAGCCCCCTTTGCCTATCATCCATCTCAAG
50% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000099576.9
3UTR CCA 72 bp ACACTGAAGGCTGGAACACAGGGTGTGAGAGGACTATaGGACATTTGGTGTCTATGCTGTAGAGGTAAAGGG +
Preference number: 3 (lower is better)
Translates to: TLKAGTQGVRGL*DIWCLCCRGKG
Trigger: CCCTTTACCTCTACAGCATAGACACCAAATGTCCCATAGTCCTCTCACACCCTGTGTTCCAGCCTTCAGTGT
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000099576.9
3UTR GCA 72 bp TACAGATCTCATCTGCATGCCTGCATAGCATTCATTTaGTGTCCACACTGGATTGGAAACCACCTGGTCCCT +
Preference number: 3 (lower is better)
Translates to: YRSHLHACIAFI*CPHWIGNHLVP
Trigger: AGGGACCAGGTGGTTTCCAATCCAGTGTGGACAGCAAATGAATGCTATGCAGGCATGCAGATGAGATCTGTA
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000099576.9
3UTR GCA 72 bp CACAGAGTAAAGGATGTCTGCAAGTGGAATTTGCCCTaGTGGTTAAGTCTCTTGCTCTTCCTCGAGGTGAGA +
Preference number: 3 (lower is better)
Translates to: HRVKDVCKWNLP*WLSLLLFLEVR
Trigger: TCTCACCTCGAGGAAGAGCAAGAGACTTAACCAGCAGGGCAAATTCCACTTGCAGACATCCTTTACTCTGTG
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000099576.9
3UTR CCA 72 bp CTGGAAGTTCCTCAGCTAAGCACAGGCCAGTGTCATTaGAATACCTGCTCTTGCAGGACAGAGTTACAACAA +
Preference number: 3 (lower is better)
Translates to: LEVPQLSTGQCH*NTCSCRTELQQ
Trigger: TTGTTGTAACTCTGTCCTGCAAGAGCAGGTATTCCAATGACACTGGCCTGTGCTTAGCTGAGGAACTTCCAG
49% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000099576.9
3UTR-3UTR CAA 90 bp AGGAAGAACCCAGACACATACAACTCTAGAACATCACGTTATTCTCTACGTGGCAAAGGTCCTGGAAAGTaGCTGAGGCAAGAGGTGGAC +
Preference number: 3 (lower is better)
Translates to: RKNPDTYNSRTSRYSLRGKGPGK*LRQEVD
Trigger: GTCCACCTCTTGCCTCAGCAACTTTCCAGGACCTTT...GCCACGTAGAGAATAACGTGATGTTCTAGAGTTGTATGTGTCTGGGTTCTTCCT
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000099576.9
3UTR GCA 72 bp AATGGCATCAGTGACTTAAGAGATGCCAGCTACTCTTaGTTTACAAGGTCTGCACTATGTCAGGCTACGGTG +
Preference number: 3 (lower is better)
Translates to: NGISDLRDASYS*FTRSALCQATV
Trigger: CACCGTAGCCTGACATAGTGCAGACCTTGTAAAGCAAGAGTAGCTGGCATCTCTTAAGTCACTGATGCCATT
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000099576.9
3UTR GCA 72 bp TGCTTCCCTCTGTCTCAGAAGGTGGAGAGAAAACACTaGAAAGGTCTCATGTATCTTAGGAGCCTCTGTGAT +
Preference number: 3 (lower is better)
Translates to: CFPLSQKVERKH*KGLMYLRSLCD
Trigger: ATCACAGAGGCTCCTAAGATACATGAGACCTTTGCAGTGTTTTCTCTCCACCTTCTGAGACAGAGGGAAGCA
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000099576.9
3UTR GCA 72 bp CAGGGTGTGAGAGGACTATGGGACATTTGGTGTCTATaGTGTAGAGGTAAAGGGTATCTGGGTCCAATAGAA +
Preference number: 3 (lower is better)
Translates to: QGVRGLWDIWCL*CRGKGYLGPIE
Trigger: TTCTATTGGACCCAGATACCCTTTACCTCTACAGCATAGACACCAAATGTCCCATAGTCCTCTCACACCCTG
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000099576.9
3UTR CCA 72 bp AGAGTAAAGGATGTCTGCAAGTGGAATTTGCCCTGCTaGTTAAGTCTCTTGCTCTTCCTCGAGGTGAGAATG +
Preference number: 3 (lower is better)
Translates to: RVKDVCKWNLPC*LSLLLFLEVRM
Trigger: CATTCTCACCTCGAGGAAGAGCAAGAGACTTAACCAGCAGGGCAAATTCCACTTGCAGACATCCTTTACTCT
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000099576.9
3UTR CCA 72 bp CTAACAAGGGACCACAGAGTAAAGGATGTCTGCAAGTaGAATTTGCCCTGCTGGTTAAGTCTCTTGCTCTTC +
Preference number: 3 (lower is better)
Translates to: LTRDHRVKDVCK*NLPCWLSLLLF
Trigger: GAAGAGCAAGAGACTTAACCAGCAGGGCAAATTCCACTTGCAGACATCCTTTACTCTGTGGTCCCTTGTTAG
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000099576.9
3UTR CCA 72 bp GGTGCTGGGATGCTTAGAAGGAACAGTAAGGTCCTTTaGCAAGTGACACTTGTAACAGAATCTGAAGCTGGA +
Preference number: 3 (lower is better)
Translates to: GAGMLRRNSKVL*QVTLVTESEAG
Trigger: TCCAGCTTCAGATTCTGTTACAAGTGTCACTTGCCAAAGGACCTTACTGTTCCTTCTAAGCATCCCAGCACC
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000099576.9
3UTR TCA 72 bp TTGTGCTTTGGCAGCCCAGTGATATCACGTTTCACATaGACCATGAAAAATACCGTGGAACCACAGAAGCAG +
Preference number: 3 (lower is better)
Translates to: LCFGSPVISRFT*TMKNTVEPQKQ
Trigger: CTGCTTCTGTGGTTCCACGGTATTTTTCATGGTTCATGTGAAACGTGATATCACTGGGCTGCCAAAGCACAA
46% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000099576.9
3UTR CCA 72 bp GTCACATACAGTTGTGCAACTAAGTCTGGTTGTGCCTaGATCCAACTGCTACCAGCATTAAAAACACTTGGG +
Preference number: 3 (lower is better)
Translates to: VTYSCATKSGCA*IQLLPALKTLG
Trigger: CCCAAGTGTTTTTAATGCTGGTAGCAGTTGGATCCAGGCACAACCAGACTTAGTTGCACAACTGTATGTGAC
46% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000099576.9
3UTR CCA 72 bp CTAAAAGCGCATATCCCTCAAAGATTACATACCCAGTaGTCAGTAGGACAGGAAGGGCACAGTATTTGTGTC +
Preference number: 3 (lower is better)
Translates to: LKAHIPQRLHTQ*SVGQEGHSICV
Trigger: GACACAAATACTGTGCCCTTCCTGTCCTACTGACCACTGGGTATGTAATCTTTGAGGGATATGCGCTTTTAG
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000099576.9
3UTR-3UTR CAA 90 bp CCTTGCTTCCCTCTGTCTCAGAAGGTGGAGAGAAAACACTGCAAAGGTCTCATGTATATTAAATGCCTTTaGGCTCTTCAGTGGAAATGC +
Preference number: 3 (lower is better)
Translates to: PCFPLSQKVERKHCKGLMYIKCL*ALQWKC
Trigger: GCATTTCCACTGAAGAGCCAAAAGGCATTTAATATA...CATGAGACCTTTGCAGTGTTTTCTCTCCACCTTCTGAGACAGAGGGAAGCAAGG
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000099576.9
3UTR TCA 72 bp GAAGCCATATTAACTGAGCAGGCCTATCTCAATAGCTaGTGCTCACTTCCAGCATCAAAACTTCTTCTCCAG +
Preference number: 3 (lower is better)
Translates to: EAILTEQAYLNS*CSLPASKLLLQ
Trigger: CTGGAGAAGAAGTTTTGATGCTGGAAGTGAGCATCAGCTATTGAGATAGGCCTGCTCAGTTAATATGGCTTC
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000099576.9
3UTR TCA 72 bp TTCCTTCAAACCACAGAAAGACAGCTAGCACCTGTATaGAATGGCATCAGTGACTTAAGAGATGCCAGCTAC +
Preference number: 3 (lower is better)
Translates to: FLQTTERQLAPV*NGISDLRDASY
Trigger: GTAGCTGGCATCTCTTAAGTCACTGATGCCATTTCATACAGGTGCTAGCTGTCTTTCTGTGGTTTGAAGGAA
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000099576.9
3UTR GCA 72 bp GTTTATTCCCTGTTGAATCCTTGGGATGTTCACTTCTaGCCAAGAATACTGACTCATTTGTGCTTTGGCAGC +
Preference number: 3 (lower is better)
Translates to: VYSLLNPWDVHF*PRILTHLCFGS
Trigger: GCTGCCAAAGCACAAATGAGTCAGTATTCTTGGGCAGAAGTGAACATCCCAAGGATTCAACAGGGAATAAAC
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000099576.9
3UTR GCA 72 bp GAAGACCTTCCAAAATCTGTGCAGAACCACAGAGACTaGTGGTCAGACGTGAAATACTTAGGTTCTATCTTG +
Preference number: 3 (lower is better)
Translates to: EDLPKSVQNHRD*WSDVKYLGSIL
Trigger: CAAGATAGAACCTAAGTATTTCACGTCTGACCAGCAGTCTCTGTGGTTCTGCACAGATTTTGGAAGGTCTTC
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000099576.9
3UTR CCA 72 bp TCACTTCTGCCCAAGAATACTGACTCATTTGTGCTTTaGCAGCCCAGTGATATCACGTTTCACATGAACCAT +
Preference number: 3 (lower is better)
Translates to: SLLPKNTDSFVL*QPSDITFHMNH
Trigger: ATGGTTCATGTGAAACGTGATATCACTGGGCTGCCAAAGCACAAATGAGTCAGTATTCTTGGGCAGAAGTGA
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000099576.9
3UTR CCA 72 bp GAATTGCTCATTTTTGGACATCTATTAATGATGCTATaGCTAGGCAGAGAAACCTCCCTAGGTGCTCAGTGG +
Preference number: 3 (lower is better)
Translates to: ELLIFGHLLMML*LGRETSLGAQW
Trigger: CCACTGAGCACCTAGGGAGGTTTCTCTGCCTAGCCATAGCATCATTAATAGATGTCCAAAAATGAGCAATTC
44% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000099576.9
3UTR CCA 72 bp GACCTTCCAAAATCTGTGCAGAACCACAGAGACTGCTaGTCAGACGTGAAATACTTAGGTTCTATCTTGAGA +
Preference number: 3 (lower is better)
Translates to: DLPKSVQNHRDC*SDVKYLGSILR
Trigger: TCTCAAGATAGAACCTAAGTATTTCACGTCTGACCAGCAGTCTCTGTGGTTCTGCACAGATTTTGGAAGGTC
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000099576.9
3UTR-3UTR CAA 90 bp AGGAAGAACCCAGACACATACAACTCTAGAACATCACGTTATTCTCTACGTGGCCATTGTTCTTGTGGATaGACAAGAGACTTCCCAAAG +
Preference number: 3 (lower is better)
Translates to: RKNPDTYNSRTSRYSLRGHCSCG*TRDFPK
Trigger: CTTTGGGAAGTCTCTTGTCAATCCACAAGAACAATG...GCCACGTAGAGAATAACGTGATGTTCTAGAGTTGTATGTGTCTGGGTTCTTCCT
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000099576.9
3UTR TCA 72 bp GCTGAAGTTAGCTCAGTCTCCTCTAGACTAAGAATTTaGCAGCAAAAATATGGGATAAAGTGGAGGGCTCCT +
Preference number: 3 (lower is better)
Translates to: AEVSSVSSRLRI*QQKYGIKWRAP
Trigger: AGGAGCCCTCCACTTTATCCCATATTTTTGCTGTCAAATTCTTAGTCTAGAGGAGACTGAGCTAACTTCAGC
43% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000099576.9
3UTR GCA 72 bp TCACCCAAATGGGTCCTCTTGATCCAAGTTTGTCCTTaGCTCATTTCTATTAGAAGTTGGTACAGAATGCCT +
Preference number: 3 (lower is better)
Translates to: SPKWVLLIQVCP*LISIRSWYRMP
Trigger: AGGCATTCTGTACCAACTTCTAATAGAAATGAGGCAAGGACAAACTTGGATCAAGAGGACCCATTTGGGTGA
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000099576.9
3UTR GCA 72 bp CCACAGGATCCATGCAGATCTCACAGAATGCTGAGATaGTTCTTGTTCCAAACACAGAACTGCATTTCTTTT +
Preference number: 3 (lower is better)
Translates to: PQDPCRSHRMLR*FLFQTQNCISF
Trigger: AAAAGAAATGCAGTTCTGTGTTTGGAACAAGAAGCATCTCAGCATTCTGTGAGATCTGCATGGATCCTGTGG
43% GC, longest homopolymer 4 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000099576.9
3UTR GCA 72 bp CAGCATCCCTCAAGCCAACACAGCTCAACTATGAATTaGCATATTCATGGTCTTCTGATATTCTGCTCACTT +
Preference number: 3 (lower is better)
Translates to: QHPSSQHSSTMN*HIHGLLIFCSL
Trigger: AAGTGAGCAGAATATCAGAAGACCATGAATATGGCAATTCATAGTTGAGCTGTGTTGGCTTGAGGGATGCTG
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000099576.9
3UTR GCA 72 bp AAAACCAAACCAAGCCAACCCATAAGTGACTTGAAGTaGCTTACATTTCTGCAGCATCTGACTCGTATTAGG +
Preference number: 3 (lower is better)
Translates to: KTKPSQPISDLK*LTFLQHLTRIR
Trigger: CCTAATACGAGTCAGATGCTGCAGAAATGTAAGGCACTTCAAGTCACTTATGGGTTGGCTTGGTTTGGTTTT
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000099576.9
3UTR CCA 72 bp TGTAGTGTTCCCAAACATAACTTTGCATTGTTCTTGTaGATTGACAAGAGACTTCCCAAAGAAGGCACAGGG +
Preference number: 3 (lower is better)
Translates to: CSVPKHNFALFL*IDKRLPKEGTG
Trigger: CCCTGTGCCTTCTTTGGGAAGTCTCTTGTCAATCCACAAGAACAATGCAAAGTTATGTTTGGGAACACTACA
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000081349.9
ENSMUST00000099576.9
ENSMUST00000102547.10
3UTR CCA 72 bp AATGTGCTAGAGCCTGTTTATTCCCTGTTGAATCCTTaGGATGTTCACTTCTGCCCAAGAATACTGACTCAT +
Preference number: 3 (lower is better)
Translates to: NVLEPVYSLLNP*DVHFCPRILTH
Trigger: ATGAGTCAGTATTCTTGGGCAGAAGTGAACATCCCAAGGATTCAACAGGGAATAAACAGGCTCTAGCACATT
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000099576.9
3UTR-3UTR CAA 90 bp GCAGCATCCCTCAAGCCAACACAGCTCAACTATGAATTGCCATATTCATGGTCTAACTGCATTTCTTTTTaGCACTTCGGTACTAACAAG +
Preference number: 3 (lower is better)
Translates to: AASLKPTQLNYELPYSWSNCISF*HFGTNK
Trigger: CTTGTTAGTACCGAAGTGCAAAAAAGAAATGCAGTT...AGACCATGAATATGGCAATTCATAGTTGAGCTGTGTTGGCTTGAGGGATGCTGC
42% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000099576.9
3UTR TCA 72 bp AGTTCTCTTGGGGATCACCATGTACCTCTTTTCTCATaGCAAGGGTATATACTGGAAGGCTTAGAATTTCCA +
Preference number: 3 (lower is better)
Translates to: SSLGDHHVPLFS*QGYILEGLEFP
Trigger: TGGAAATTCTAAGCCTTCCAGTATATACCCTTGTCATGAGAAAAGAGGTACATGGTGATCCCCAAGAGAACT
42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000081349.9
ENSMUST00000099576.9
ENSMUST00000102547.10
3UTR GCA 72 bp CGCCCACCAGCCATCACAACCATTCAATTTCATACATaGTTATTTAGCACTGTTACCACTTTGGATTTGATG +
Preference number: 3 (lower is better)
Translates to: RPPAITTIQFHT*LFSTVTTLDLM
Trigger: CATCAAATCCAAAGTGGTAACAGTGCTAAATAAGCATGTATGAAATTGAATGGTTGTGATGGCTGGTGGGCG
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000099576.9
3UTR CCA 72 bp AAAACCCACTGCGTGATTCCCAGAATTGCTCATTTTTaGACATCTATTAATGATGCTATGGCTAGGCAGAGA +
Preference number: 3 (lower is better)
Translates to: KTHCVIPRIAHF*TSINDAMARQR
Trigger: TCTCTGCCTAGCCATAGCATCATTAATAGATGTCCAAAAATGAGCAATTCTGGGAATCACGCAGTGGGTTTT
42% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000099576.9
3UTR-3UTR CAA 90 bp AGGAAGAACCCAGACACATACAACTCTAGAACATCACGTTATTCTCTACGTGGCTTCCCAAACATAACTTaGCATTGTTCTTGTGGATTG +
Preference number: 3 (lower is better)
Translates to: RKNPDTYNSRTSRYSLRGFPNIT*HCSCGL
Trigger: CAATCCACAAGAACAATGCAAAGTTATGTTTGGGAA...GCCACGTAGAGAATAACGTGATGTTCTAGAGTTGTATGTGTCTGGGTTCTTCCT
41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000099576.9
3UTR-3UTR CAA 90 bp AAACCACGTGACAATAACTTTCCTTCAAACCACAGAAAGACAGCTAGCACCTGTGTGCTGACAGTCCATTaGCAGGTTAATATCAACATA +
Preference number: 3 (lower is better)
Translates to: KPRDNNFPSNHRKTASTCVLTVH*QVNINI
Trigger: TATGTTGATATTAACCTGCAAATGGACTGTCAGCAC...ACAGGTGCTAGCTGTCTTTCTGTGGTTTGAAGGAAAGTTATTGTCACGTGGTTT
41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000099576.9
3UTR-3UTR CAA 90 bp GGATCACCATGTACCTCTTTTCTCATGACAAGGGTATATACTGGAAGGCTTAGATTCCCAAACATAACTTaGCATTGTTCTTGTGGATTG +
Preference number: 3 (lower is better)
Translates to: GSPCTSFLMTRVYTGRLRFPNIT*HCSCGL
Trigger: CAATCCACAAGAACAATGCAAAGTTATGTTTGGGAA...TCTAAGCCTTCCAGTATATACCCTTGTCATGAGAAAAGAGGTACATGGTGATCC
40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000081349.9
ENSMUST00000099576.9
ENSMUST00000102547.10
3UTR-3UTR CAA 90 bp ATGAATTGCCATATTCATGGTCTTCTGATATTCTGCTCACTTATAACGTCCCCTAGCACTGTTACCACTTaGGATTTGATGATATGTCCC +
Preference number: 3 (lower is better)
Translates to: MNCHIHGLLIFCSLITSPSTVTT*DLMICP
Trigger: GGGACATATCATCAAATCCAAAGTGGTAACAGTGCT...AGGGGACGTTATAAGTGAGCAGAATATCAGAAGACCATGAATATGGCAATTCAT
40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000099576.9
3UTR-3UTR CAA 90 bp ATGAATTGCCATATTCATGGTCTTCTGATATTCTGCTCACTTATAACGTCCCCTGTTACCACTTTGGATTaGATGATATGTCCCCATTTT +
Preference number: 3 (lower is better)
Translates to: MNCHIHGLLIFCSLITSPVTTLD*MICPHF
Trigger: AAAATGGGGACATATCATCAAATCCAAAGTGGTAAC...AGGGGACGTTATAAGTGAGCAGAATATCAGAAGACCATGAATATGGCAATTCAT
38% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000099576.9
3UTR TCA 72 bp AGGATAAAAATTAAGATCAATACAAACTGTAGTGTGTaGGGAATAAGGCTTGAGTTCTCTTGGGGATCACCA +
Preference number: 3 (lower is better)
Translates to: RIKIKINTNCSV*GIRLEFSWGSP
Trigger: TGGTGATCCCCAAGAGAACTCAAGCCTTATTCCTCACACACTACAGTTTGTATTGATCTTAATTTTTATCCT
38% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000099576.9
CDS-3UTR CCA 90 bp CAGGAACTCCCCGGTGGCCCTTGTGTCTGCAGGAGCAGTGAGGTGCTGTCTTTCAGGTCCAAGTCCAGGTaGGAGGGGCGGAGGTGGAGG +
Preference number: 4 (lower is better)
Translates to: QELPGGPCVCRSSEVLSFRSKSR*EGRRWR
Trigger: CCTCCACCTCCGCCCCTCCCACCTGGACTTGGACCT...GAAAGACAGCACCTCACTGCTCCTGCAGACACAAGGGCCACCGGGGAGTTCCTG
63% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000081349.9
ENSMUST00000099576.9
ENSMUST00000102547.10
ENSMUST00000161731.5
CDS-3UTR CCA 90 bp CAGGAACTCCCCGGTGGCCCTTGTGTCTGCAGGAGCAGTGAGGTGCTGTCTTTCTGGGGGTGCAAGTCCTaGCGGAGGAGGAGGTGGAGG +
Preference number: 4 (lower is better)
Translates to: QELPGGPCVCRSSEVLSFWGCKS*RRRRWR
Trigger: CCTCCACCTCCTCCTCCGCCAGGACTTGCACCCCCA...GAAAGACAGCACCTCACTGCTCCTGCAGACACAAGGGCCACCGGGGAGTTCCTG
63% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 4 transcripts:
ENSMUST00000081349.9
ENSMUST00000099576.9
ENSMUST00000102547.10
ENSMUST00000161731.5
CDS-3UTR TCA 90 bp TCTTTCAGGAACTCCCCGGTGGCCCTTGTGTCTGCAGGAGCAGTGAGGTGCTGTCCCCATCTGAAATGCTaGCTCCTGGCAGCCACGCCC +
Preference number: 4 (lower is better)
Translates to: SFRNSPVALVSAGAVRCCPHLKC*LLAATP
Trigger: GGGCGTGGCTGCCAGGAGTCAGCATTTCAGATGGGG...ACAGCACCTCACTGCTCCTGCAGACACAAGGGCCACCGGGGAGTTCCTGAAAGA
61% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000099576.9
ENSMUST00000102547.10
ENSMUST00000161731.5
CDS-3UTR TCA 90 bp TCTTTCAGGAACTCCCCGGTGGCCCTTGTGTCTGCAGGAGCAGTGAGGTGCTGTGCTGGGGTGGAGCTGTaGTCTTCTCTGGCCCCAAGC +
Preference number: 4 (lower is better)
Translates to: SFRNSPVALVSAGAVRCCAGVEL*SSLAPS
Trigger: GCTTGGGGCCAGAGAAGATCACAGCTCCACCCCAGC...ACAGCACCTCACTGCTCCTGCAGACACAAGGGCCACCGGGGAGTTCCTGAAAGA
61% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 3 transcripts:
ENSMUST00000099576.9
ENSMUST00000102547.10
ENSMUST00000161731.5
CDS-3UTR GCA 90 bp CTCCCCGGTGGCCCTTGTGTCTGCAGGAGCAGTGAGGTGCTGTCTTTCATATTGTCTGCAGCCTGGTCCTaGCTGGGGCTGTGCTCTGCC +
Preference number: 4 (lower is better)
Translates to: LPGGPCVCRSSEVLSFILSAAWS*LGLCSA
Trigger: GGCAGAGCACAGCCCCAGGCAGGACCAGGCTGCAGA...CAATATGAAAGACAGCACCTCACTGCTCCTGCAGACACAAGGGCCACCGGGGAG
61% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000081349.9
CDS-3UTR CCA 90 bp TCTTTCAGGAACTCCCCGGTGGCCCTTGTGTCTGCAGGAGCAGTGAGGTGCTGTTGGGAGGGGCGGAGGTaGAGGAATGAGAGGTGGAGG +
Preference number: 4 (lower is better)
Translates to: SFRNSPVALVSAGAVRCCWEGRR*RNERWR
Trigger: CCTCCACCTCTCATTCCTCCACCTCCGCCCCTCCCA...ACAGCACCTCACTGCTCCTGCAGACACAAGGGCCACCGGGGAGTTCCTGAAAGA
61% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000081349.9
ENSMUST00000099576.9
ENSMUST00000102547.10
ENSMUST00000161731.5
CDS-3UTR CCA 90 bp CTCCCCGGTGGCCCTTGTGTCTGCAGGAGCAGTGAGGTGCTGTCTTTCATATTGTGGGGGTGCAAGTCCTaGCGGAGGAGGAGGTGGAGG +
Preference number: 4 (lower is better)
Translates to: LPGGPCVCRSSEVLSFILWGCKS*RRRRWR
Trigger: CCTCCACCTCCTCCTCCGCCAGGACTTGCACCCCCA...CAATATGAAAGACAGCACCTCACTGCTCCTGCAGACACAAGGGCCACCGGGGAG
61% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 4 transcripts:
ENSMUST00000081349.9
ENSMUST00000099576.9
ENSMUST00000102547.10
ENSMUST00000161731.5
CDS-3UTR GCA 90 bp CAGGAACTCCCCGGTGGCCCTTGTGTCTGCAGGAGCAGTGAGGTGCTGTCTTTCTCTGGTGGCAACTGGTaGTGGGGTGGAGCTGTGATC +
Preference number: 4 (lower is better)
Translates to: QELPGGPCVCRSSEVLSFSGGNW*WGGAVI
Trigger: GATCACAGCTCCACCCCAGCACCAGTTGCCACCAGA...GAAAGACAGCACCTCACTGCTCCTGCAGACACAAGGGCCACCGGGGAGTTCCTG
60% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000161731.5
CDS-3UTR CCA 90 bp AACTCCCCGGTGGCCCTTGTGTCTGCAGGAGCAGTGAGGTGCTGTCTTTCATATTGGGGGTGCAAGTCCTaGCGGAGGAGGAGGTGGAGG +
Preference number: 4 (lower is better)
Translates to: NSPVALVSAGAVRCCLSYWGCKS*RRRRWR
Trigger: CCTCCACCTCCTCCTCCGCCAGGACTTGCACCCCCA...ATATGAAAGACAGCACCTCACTGCTCCTGCAGACACAAGGGCCACCGGGGAGTT
60% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 4 transcripts:
ENSMUST00000081349.9
ENSMUST00000099576.9
ENSMUST00000102547.10
ENSMUST00000161731.5
CDS-3UTR CCA 90 bp CAGGAACTCCCCGGTGGCCCTTGTGTCTGCAGGAGCAGTGAGGTGCTGTCTTTCGCCTGGATGTTCGTTTaGCTGCTGGCTGAGGCTGGT +
Preference number: 4 (lower is better)
Translates to: QELPGGPCVCRSSEVLSFAWMFV*LLAEAG
Trigger: ACCAGCCTCAGCCAGCAGCCAAACGAACATCCAGGC...GAAAGACAGCACCTCACTGCTCCTGCAGACACAAGGGCCACCGGGGAGTTCCTG
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000099576.9
ENSMUST00000102547.10
ENSMUST00000161731.5
CDS-3UTR CCA 90 bp CAGGAACTCCCCGGTGGCCCTTGTGTCTGCAGGAGCAGTGAGGTGCTGTCTTTCCACGCCCTTTCCTCCTaGTTCTCTTCTGCCGGAGCT +
Preference number: 4 (lower is better)
Translates to: QELPGGPCVCRSSEVLSFHALSS*FSSAGA
Trigger: AGCTCCGGCAGAAGAGAACCAGGAGGAAAGGGCGTG...GAAAGACAGCACCTCACTGCTCCTGCAGACACAAGGGCCACCGGGGAGTTCCTG
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000099576.9
ENSMUST00000102547.10
ENSMUST00000161731.5
CDS-3UTR CCA 90 bp CAGGAACTCCCCGGTGGCCCTTGTGTCTGCAGGAGCAGTGAGGTGCTGTCTTTCCCTGAGGATGTTGGCTaGGCAGCTCTCTCTTCTCCG +
Preference number: 4 (lower is better)
Translates to: QELPGGPCVCRSSEVLSFPEDVG*AALSSP
Trigger: CGGAGAAGAGAGAGCTGCCCAGCCAACATCCTCAGG...GAAAGACAGCACCTCACTGCTCCTGCAGACACAAGGGCCACCGGGGAGTTCCTG
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000099576.9
ENSMUST00000102547.10
ENSMUST00000161731.5
CDS-3UTR CCA 90 bp CAGGAACTCCCCGGTGGCCCTTGTGTCTGCAGGAGCAGTGAGGTGCTGTCTTTCTGGACTGGGACACCTTaGAGACAGAGGCGAGGGAAC +
Preference number: 4 (lower is better)
Translates to: QELPGGPCVCRSSEVLSFWTGTP*RQRRGN
Trigger: GTTCCCTCGCCTCTGTCTCCAAGGTGTCCCAGTCCA...GAAAGACAGCACCTCACTGCTCCTGCAGACACAAGGGCCACCGGGGAGTTCCTG
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000099576.9
ENSMUST00000102547.10
ENSMUST00000161731.5
CDS-3UTR TCA 90 bp CAGGAACTCCCCGGTGGCCCTTGTGTCTGCAGGAGCAGTGAGGTGCTGTCTTTCGGGTGGCCCTTGTGTTaGGAGAGAAGCCCAACCTTT +
Preference number: 4 (lower is better)
Translates to: QELPGGPCVCRSSEVLSFGWPLC*ERSPTF
Trigger: AAAGGTTGGGCTTCTCTCTCAACACAAGGGCCACCC...GAAAGACAGCACCTCACTGCTCCTGCAGACACAAGGGCCACCGGGGAGTTCCTG
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000099576.9
ENSMUST00000102547.10
ENSMUST00000161731.5
CDS-3UTR TCA 90 bp CTCCCCGGTGGCCCTTGTGTCTGCAGGAGCAGTGAGGTGCTGTCTTTCATATTGAGGCGAGGGAACAGGTaGCAGCCGTTTGTGTGCGCT +
Preference number: 4 (lower is better)
Translates to: LPGGPCVCRSSEVLSFILRRGNR*QPFVCA
Trigger: AGCGCACACAAACGGCTGTCACCTGTTCCCTCGCCT...CAATATGAAAGACAGCACCTCACTGCTCCTGCAGACACAAGGGCCACCGGGGAG
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000099576.9
ENSMUST00000102547.10
ENSMUST00000161731.5
CDS-3UTR TCA 90 bp AACTCCCCGGTGGCCCTTGTGTCTGCAGGAGCAGTGAGGTGCTGTCTTTCATATGCTGGGGTGGAGCTGTaGTCTTCTCTGGCCCCAAGC +
Preference number: 4 (lower is better)
Translates to: NSPVALVSAGAVRCCLSYAGVEL*SSLAPS
Trigger: GCTTGGGGCCAGAGAAGATCACAGCTCCACCCCAGC...ATATGAAAGACAGCACCTCACTGCTCCTGCAGACACAAGGGCCACCGGGGAGTT
59% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 3 transcripts:
ENSMUST00000099576.9
ENSMUST00000102547.10
ENSMUST00000161731.5
CDS-3UTR GCA 90 bp GACTTCCCAAAGAAGGCACAGGGGACTTTCTGCAGATGGCCTCAGAAGGAGATGAGGAGGAGGTGGGGGTaGAAGTCCTGGCGGAGGAGG +
Preference number: 4 (lower is better)
Translates to: DFPKKAQGTFCRWPQKEMRRRWG*KSWRRR
Trigger: CCTCCTCCGCCAGGACTTGCACCCCCACCTCCTCCT...CATCTCCTTCTGAGGCCATCTGCAGAAAGTCCCCTGTGCCTTCTTTGGGAAGTC
59% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000081349.9
ENSMUST00000099576.9
ENSMUST00000102547.10
CDS-3UTR GCA 90 bp CCGGTGGCCCTTGTGTCTGCAGGAGCAGTGAGGTGCTGTCTTTCATATTGTAACAGGAGGAGGTGGGGGTaGAAGTCCTGGCGGAGGAGG +
Preference number: 4 (lower is better)
Translates to: PVALVSAGAVRCCLSYCNRRRWG*KSWRRR
Trigger: CCTCCTCCGCCAGGACTTGCACCCCCACCTCCTCCT...GTTACAATATGAAAGACAGCACCTCACTGCTCCTGCAGACACAAGGGCCACCGG
59% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 4 transcripts:
ENSMUST00000081349.9
ENSMUST00000099576.9
ENSMUST00000102547.10
ENSMUST00000161731.5
CDS-3UTR CCA 90 bp AACTCCCCGGTGGCCCTTGTGTCTGCAGGAGCAGTGAGGTGCTGTCTTTCATATTGGGAGGGGCGGAGGTaGAGGAATGAGAGGTGGAGG +
Preference number: 4 (lower is better)
Translates to: NSPVALVSAGAVRCCLSYWEGRR*RNERWR
Trigger: CCTCCACCTCTCATTCCTCCACCTCCGCCCCTCCCA...ATATGAAAGACAGCACCTCACTGCTCCTGCAGACACAAGGGCCACCGGGGAGTT
59% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000081349.9
ENSMUST00000099576.9
ENSMUST00000102547.10
ENSMUST00000161731.5
CDS-3UTR CCA 90 bp CAGGAACTCCCCGGTGGCCCTTGTGTCTGCAGGAGCAGTGAGGTGCTGTCTTTCGACACACAGGTGGTATaGGTGGTGCTGGAGGCAAAG +
Preference number: 4 (lower is better)
Translates to: QELPGGPCVCRSSEVLSFDTQVV*VVLEAK
Trigger: CTTTGCCTCCAGCACCACCCATACCACCTGTGTGTC...GAAAGACAGCACCTCACTGCTCCTGCAGACACAAGGGCCACCGGGGAGTTCCTG
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000081349.9
ENSMUST00000099576.9
ENSMUST00000102547.10
ENSMUST00000161731.5
CDS-3UTR CCA 90 bp TTCCCAAAGAAGGCACAGGGGACTTTCTGCAGATGGCCTCAGAAGGAGATGAGCAGGAGGCGGAGGAGGTaGCGGTGGCGACACAGGACA +
Preference number: 4 (lower is better)
Translates to: FPKKAQGTFCRWPQKEMSRRRRR*RWRHRT
Trigger: TGTCCTGTGTCGCCACCGCCACCTCCTCCGCCTCCT...GCTCATCTCCTTCTGAGGCCATCTGCAGAAAGTCCCCTGTGCCTTCTTTGGGAA
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000081349.9
ENSMUST00000099576.9
ENSMUST00000102547.10
CDS-3UTR CCA 90 bp GACTTCCCAAAGAAGGCACAGGGGACTTTCTGCAGATGGCCTCAGAAGGAGATGAGGAGGCGGAGGAGGTaGCGGTGGCGACACAGGACA +
Preference number: 4 (lower is better)
Translates to: DFPKKAQGTFCRWPQKEMRRRRR*RWRHRT
Trigger: TGTCCTGTGTCGCCACCGCCACCTCCTCCGCCTCCT...CATCTCCTTCTGAGGCCATCTGCAGAAAGTCCCCTGTGCCTTCTTTGGGAAGTC
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000081349.9
ENSMUST00000099576.9
ENSMUST00000102547.10
CDS-3UTR CCA 90 bp TCTTTCAGGAACTCCCCGGTGGCCCTTGTGTCTGCAGGAGCAGTGAGGTGCTGTAGGTGGTGGTGGTGGTaGTCCATCACTTGGAGGCAC +
Preference number: 4 (lower is better)
Translates to: SFRNSPVALVSAGAVRCCRWWWW*SITWRH
Trigger: GTGCCTCCAAGTGATGGACCACCACCACCACCACCT...ACAGCACCTCACTGCTCCTGCAGACACAAGGGCCACCGGGGAGTTCCTGAAAGA
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000081349.9
ENSMUST00000099576.9
ENSMUST00000102547.10
ENSMUST00000161731.5
CDS-3UTR CCA 90 bp CCGGTGGCCCTTGTGTCTGCAGGAGCAGTGAGGTGCTGTCTTTCATATTGTAACCAGTCCAGGAGGAGGTaGGGGTGCAAGTCCTGGCGG +
Preference number: 4 (lower is better)
Translates to: PVALVSAGAVRCCLSYCNQSRRR*GCKSWR
Trigger: CCGCCAGGACTTGCACCCCCACCTCCTCCTGGACTG...GTTACAATATGAAAGACAGCACCTCACTGCTCCTGCAGACACAAGGGCCACCGG
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000081349.9
ENSMUST00000099576.9
ENSMUST00000102547.10
ENSMUST00000161731.5
CDS-3UTR CCA 90 bp TCTTTCAGGAACTCCCCGGTGGCCCTTGTGTCTGCAGGAGCAGTGAGGTGCTGTTGGACTGGGACACCTTaGAGACAGAGGCGAGGGAAC +
Preference number: 4 (lower is better)
Translates to: SFRNSPVALVSAGAVRCCWTGTP*RQRRGN
Trigger: GTTCCCTCGCCTCTGTCTCCAAGGTGTCCCAGTCCA...ACAGCACCTCACTGCTCCTGCAGACACAAGGGCCACCGGGGAGTTCCTGAAAGA
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000099576.9
ENSMUST00000102547.10
ENSMUST00000161731.5
CDS-3UTR CCA 90 bp CAGGAACTCCCCGGTGGCCCTTGTGTCTGCAGGAGCAGTGAGGTGCTGTCTTTCTTCAGAGGCAATACCTaGTGGCAACTGGTGCTGGGG +
Preference number: 4 (lower is better)
Translates to: QELPGGPCVCRSSEVLSFFRGNT*WQLVLG
Trigger: CCCCAGCACCAGTTGCCACCAGGTATTGCCTCTGAA...GAAAGACAGCACCTCACTGCTCCTGCAGACACAAGGGCCACCGGGGAGTTCCTG
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000099576.9
ENSMUST00000102547.10
CDS-3UTR CCA 90 bp CAGGAACTCCCCGGTGGCCCTTGTGTCTGCAGGAGCAGTGAGGTGCTGTCTTTCCAGAAATGGACAGGGTaGTCCGGCTCTGTAACCAGG +
Preference number: 4 (lower is better)
Translates to: QELPGGPCVCRSSEVLSFQKWTG*SGSVTR
Trigger: CCTGGTTACAGAGCCGGACCACCCTGTCCATTTCTG...GAAAGACAGCACCTCACTGCTCCTGCAGACACAAGGGCCACCGGGGAGTTCCTG
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000099576.9
ENSMUST00000102547.10
CDS-3UTR TCA 90 bp TCCCCGGTGGCCCTTGTGTCTGCAGGAGCAGTGAGGTGCTGTCTTTCATATTGTGCCTCTGCCTGTGGCTaGTCTGAGCCTTTGCTGGGA +
Preference number: 4 (lower is better)
Translates to: SPVALVSAGAVRCCLSYCASACG*SEPLLG
Trigger: TCCCAGCAAAGGCTCAGATCAGCCACAGGCAGAGGC...ACAATATGAAAGACAGCACCTCACTGCTCCTGCAGACACAAGGGCCACCGGGGA
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000081349.9
CDS-3UTR TCA 90 bp TCTTTCAGGAACTCCCCGGTGGCCCTTGTGTCTGCAGGAGCAGTGAGGTGCTGTTGGTCCTTCCCCATCTaGAATGCTGACTCCTGGCAG +
Preference number: 4 (lower is better)
Translates to: SFRNSPVALVSAGAVRCCWSFPI*NADSWQ
Trigger: CTGCCAGGAGTCAGCATTTCAGATGGGGAAGGACCA...ACAGCACCTCACTGCTCCTGCAGACACAAGGGCCACCGGGGAGTTCCTGAAAGA
58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000099576.9
ENSMUST00000102547.10
ENSMUST00000161731.5
CDS-3UTR TCA 90 bp AACTCCCCGGTGGCCCTTGTGTCTGCAGGAGCAGTGAGGTGCTGTCTTTCATATAGGCGAGGGAACAGGTaGCAGCCGTTTGTGTGCGCT +
Preference number: 4 (lower is better)
Translates to: NSPVALVSAGAVRCCLSYRRGNR*QPFVCA
Trigger: AGCGCACACAAACGGCTGTCACCTGTTCCCTCGCCT...ATATGAAAGACAGCACCTCACTGCTCCTGCAGACACAAGGGCCACCGGGGAGTT
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000099576.9
ENSMUST00000102547.10
ENSMUST00000161731.5
CDS-3UTR GCA 90 bp TCTTTCAGGAACTCCCCGGTGGCCCTTGTGTCTGCAGGAGCAGTGAGGTGCTGTCCACCTCTCTGCCCCTaGATGTTTCCCATGGCTTTC +
Preference number: 4 (lower is better)
Translates to: SFRNSPVALVSAGAVRCCPPLCP*MFPMAF
Trigger: GAAAGCCATGGGAAACATGCAGGGGCAGAGAGGTGG...ACAGCACCTCACTGCTCCTGCAGACACAAGGGCCACCGGGGAGTTCCTGAAAGA
58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000099576.9
ENSMUST00000102547.10
ENSMUST00000161731.5
CDS-3UTR GCA 90 bp AACTCCCCGGTGGCCCTTGTGTCTGCAGGAGCAGTGAGGTGCTGTCTTTCATATACTTCCGAGTCCTGCTaGTCCACCTCTCTGCCCCTG +
Preference number: 4 (lower is better)
Translates to: NSPVALVSAGAVRCCLSYTSESC*STSLPL
Trigger: CAGGGGCAGAGAGGTGGAGCAGCAGGACTCGGAAGT...ATATGAAAGACAGCACCTCACTGCTCCTGCAGACACAAGGGCCACCGGGGAGTT
58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000099576.9
ENSMUST00000102547.10
ENSMUST00000161731.5
CDS-3UTR CCA 90 bp CAGGAACTCCCCGGTGGCCCTTGTGTCTGCAGGAGCAGTGAGGTGCTGTCTTTCCAGAGTCAGAATCACTaGTGGTGTGAACCAGGGTCC +
Preference number: 4 (lower is better)
Translates to: QELPGGPCVCRSSEVLSFQSQNH*WCEPGS
Trigger: GGACCCTGGTTCACACCACCAGTGATTCTGACTCTG...GAAAGACAGCACCTCACTGCTCCTGCAGACACAAGGGCCACCGGGGAGTTCCTG
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000081349.9
CDS-3UTR CCA 90 bp TTCCCAAAGAAGGCACAGGGGACTTTCTGCAGATGGCCTCAGAAGGAGATGAGCCCTTCTTCTGCAGCCTaGTCCTGCCTGGGGCTGTGC +
Preference number: 4 (lower is better)
Translates to: FPKKAQGTFCRWPQKEMSPSSAA*SCLGLC
Trigger: GCACAGCCCCAGGCAGGACCAGGCTGCAGAAGAAGG...GCTCATCTCCTTCTGAGGCCATCTGCAGAAAGTCCCCTGTGCCTTCTTTGGGAA
58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000081349.9
CDS-3UTR CCA 90 bp AACTCCCCGGTGGCCCTTGTGTCTGCAGGAGCAGTGAGGTGCTGTCTTTCATATGCTGCTCCAGGAGAGTaGGAGTGGCCTTCGGATCAG +
Preference number: 4 (lower is better)
Translates to: NSPVALVSAGAVRCCLSYAAPGE*EWPSDQ
Trigger: CTGATCCGAAGGCCACTCCCACTCTCCTGGAGCAGC...ATATGAAAGACAGCACCTCACTGCTCCTGCAGACACAAGGGCCACCGGGGAGTT
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000081349.9
CDS-3UTR CCA 90 bp CTCCCCGGTGGCCCTTGTGTCTGCAGGAGCAGTGAGGTGCTGTCTTTCATATTGAGCTTGGAGTCTGCCTaGAGTCCTGTCGTCCTGCTC +
Preference number: 4 (lower is better)
Translates to: LPGGPCVCRSSEVLSFILSLESA*SPVVLL
Trigger: GAGCAGGACGACAGGACTCCAGGCAGACTCCAAGCT...CAATATGAAAGACAGCACCTCACTGCTCCTGCAGACACAAGGGCCACCGGGGAG
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000081349.9
ENSMUST00000099576.9
ENSMUST00000102547.10
CDS-3UTR CCA 90 bp TTCCCAAAGAAGGCACAGGGGACTTTCTGCAGATGGCCTCAGAAGGAGATGAGCTGGGAGGGGCGGAGGTaGAGGAATGAGAGGTGGAGG +
Preference number: 4 (lower is better)
Translates to: FPKKAQGTFCRWPQKEMSWEGRR*RNERWR
Trigger: CCTCCACCTCTCATTCCTCCACCTCCGCCCCTCCCA...GCTCATCTCCTTCTGAGGCCATCTGCAGAAAGTCCCCTGTGCCTTCTTTGGGAA
58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000081349.9
ENSMUST00000099576.9
ENSMUST00000102547.10
CDS-3UTR CCA 90 bp CTCCCCGGTGGCCCTTGTGTCTGCAGGAGCAGTGAGGTGCTGTCTTTCATATTGCACAGGTGGTATGGGTaGTGCTGGAGGCAAAGGTCC +
Preference number: 4 (lower is better)
Translates to: LPGGPCVCRSSEVLSFILHRWYG*CWRQRS
Trigger: GGACCTTTGCCTCCAGCACCACCCATACCACCTGTG...CAATATGAAAGACAGCACCTCACTGCTCCTGCAGACACAAGGGCCACCGGGGAG
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000081349.9
ENSMUST00000099576.9
ENSMUST00000102547.10
ENSMUST00000161731.5
CDS-3UTR CCA 90 bp CTCCCCGGTGGCCCTTGTGTCTGCAGGAGCAGTGAGGTGCTGTCTTTCATATTGCACAGGACACACAGGTaGTATGGGTGGTGCTGGAGG +
Preference number: 4 (lower is better)
Translates to: LPGGPCVCRSSEVLSFILHRTHR*YGWCWR
Trigger: CCTCCAGCACCACCCATACCACCTGTGTGTCCTGTG...CAATATGAAAGACAGCACCTCACTGCTCCTGCAGACACAAGGGCCACCGGGGAG
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000081349.9
ENSMUST00000099576.9
ENSMUST00000102547.10
ENSMUST00000161731.5
CDS-3UTR CCA 90 bp CTCCCCGGTGGCCCTTGTGTCTGCAGGAGCAGTGAGGTGCTGTCTTTCATATTGCTGCAGGTACTCCCTTaGGGACTCCTTGCACACCAG +
Preference number: 4 (lower is better)
Translates to: LPGGPCVCRSSEVLSFILLQVLP*GLLAHQ
Trigger: CTGGTGTGCAAGGAGTCCCCAAGGGAGTACCTGCAG...CAATATGAAAGACAGCACCTCACTGCTCCTGCAGACACAAGGGCCACCGGGGAG
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000081349.9
ENSMUST00000099576.9
ENSMUST00000102547.10
ENSMUST00000161731.5
CDS-3UTR CCA 90 bp CTCCCCGGTGGCCCTTGTGTCTGCAGGAGCAGTGAGGTGCTGTCTTTCATATTGCATCTCCTACCTCAGTaGGGCTGCTGTCAGGGGACA +
Preference number: 4 (lower is better)
Translates to: LPGGPCVCRSSEVLSFILHLLPQ*GCCQGT
Trigger: TGTCCCCTGACAGCAGCCCCACTGAGGTAGGAGATG...CAATATGAAAGACAGCACCTCACTGCTCCTGCAGACACAAGGGCCACCGGGGAG
58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000099576.9
ENSMUST00000102547.10
ENSMUST00000161731.5
CDS-3UTR TCA 90 bp GACTTCCCAAAGAAGGCACAGGGGACTTTCTGCAGATGGCCTCAGAAGGAGATGCACGCTGGGTCAACTTaGGCAAAGCCAGGTCCCCGT +
Preference number: 4 (lower is better)
Translates to: DFPKKAQGTFCRWPQKEMHAGST*AKPGPR
Trigger: ACGGGGACCTGGCTTTGCTCAAGTTGACCCAGCGTG...CATCTCCTTCTGAGGCCATCTGCAGAAAGTCCCCTGTGCCTTCTTTGGGAAGTC
57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000081349.9
CDS-3UTR TCA 90 bp CAGGAACTCCCCGGTGGCCCTTGTGTCTGCAGGAGCAGTGAGGTGCTGTCTTTCGGGGATATCTTATGCTaGCTAGATGAGGAGGTGCCT +
Preference number: 4 (lower is better)
Translates to: QELPGGPCVCRSSEVLSFGDILC*LDEEVP
Trigger: AGGCACCTCCTCATCTAGTCAGCATAAGATATCCCC...GAAAGACAGCACCTCACTGCTCCTGCAGACACAAGGGCCACCGGGGAGTTCCTG
57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000081349.9
ENSMUST00000099576.9
ENSMUST00000102547.10
ENSMUST00000161731.5
CDS-3UTR TCA 90 bp CTCCCCGGTGGCCCTTGTGTCTGCAGGAGCAGTGAGGTGCTGTCTTTCATATTGCCTCCAGTTTGTCCTTaGAAGGCTGCAGGTACTCCC +
Preference number: 4 (lower is better)
Translates to: LPGGPCVCRSSEVLSFILPPVCP*KAAGTP
Trigger: GGGAGTACCTGCAGCCTTTCAAGGACAAACTGGAGG...CAATATGAAAGACAGCACCTCACTGCTCCTGCAGACACAAGGGCCACCGGGGAG
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000081349.9
ENSMUST00000099576.9
ENSMUST00000102547.10
ENSMUST00000161731.5
CDS-3UTR TCA 90 bp CTCCCCGGTGGCCCTTGTGTCTGCAGGAGCAGTGAGGTGCTGTCTTTCATATTGTGTCTGGCCCCTCCCTaGCTTGGTAGCAGTTATGGA +
Preference number: 4 (lower is better)
Translates to: LPGGPCVCRSSEVLSFILCLAPP*LGSSYG
Trigger: TCCATAACTGCTACCAAGTCAGGGAGGGGCCAGACA...CAATATGAAAGACAGCACCTCACTGCTCCTGCAGACACAAGGGCCACCGGGGAG
57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000099576.9
ENSMUST00000102547.10
ENSMUST00000161731.5
CDS-3UTR TCA 90 bp CAGGAACTCCCCGGTGGCCCTTGTGTCTGCAGGAGCAGTGAGGTGCTGTCTTTCAAGATCAGTGTCCTCTaGGGTTCTCCCAGAGTTTCC +
Preference number: 4 (lower is better)
Translates to: QELPGGPCVCRSSEVLSFKISVL*GSPRVS
Trigger: GGAAACTCTGGGAGAACCTCAGAGGACACTGATCTT...GAAAGACAGCACCTCACTGCTCCTGCAGACACAAGGGCCACCGGGGAGTTCCTG
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000099576.9
ENSMUST00000102547.10
ENSMUST00000161731.5
CDS-3UTR TCA 90 bp TCTTTCAGGAACTCCCCGGTGGCCCTTGTGTCTGCAGGAGCAGTGAGGTGCTGTTTCCAGCTTCCTGCTTaGGTTCCAGTCCTGACTTCC +
Preference number: 4 (lower is better)
Translates to: SFRNSPVALVSAGAVRCCFQLPA*VPVLTS
Trigger: GGAAGTCAGGACTGGAACTCAAGCAGGAAGCTGGAA...ACAGCACCTCACTGCTCCTGCAGACACAAGGGCCACCGGGGAGTTCCTGAAAGA
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000102547.10
CDS-3UTR GCA 90 bp CAGGAACTCCCCGGTGGCCCTTGTGTCTGCAGGAGCAGTGAGGTGCTGTCTTTCGGGCGTGGATGTCTTTaGTGTCTTTTGAGGGAGAGA +
Preference number: 4 (lower is better)
Translates to: QELPGGPCVCRSSEVLSFGRGCL*CLLRER
Trigger: TCTCTCCCTCAAAAGACAGCAAAGACATCCACGCCC...GAAAGACAGCACCTCACTGCTCCTGCAGACACAAGGGCCACCGGGGAGTTCCTG
57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000081349.9
ENSMUST00000099576.9
ENSMUST00000102547.10
ENSMUST00000161731.5
CDS-3UTR GCA 90 bp CAACTGTTTGGAACGCCCGGCCCAGGAGATCTAACAGCCTCCTGCTGGCTTCTATCACAGGGAGTTCTCTaGGCCAGTTGCCAGCACTCT +
Preference number: 4 (lower is better)
Translates to: QLFGTPGPGDLTASCWLLSQGVL*ASCQHS
Trigger: AGAGTGCTGGCAACTGGCGCAGAGAACTCCCTGTGA...TAGAAGCCAGCAGGAGGCTGTTAGATCTCCTGGGCCGGGCGTTCCAAACAGTTG
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000099576.9
CDS-3UTR GCA 90 bp CTCCCCGGTGGCCCTTGTGTCTGCAGGAGCAGTGAGGTGCTGTCTTTCATATTGTCACAGGGAGTTCTCTaGGCCAGTTGCCAGCACTCT +
Preference number: 4 (lower is better)
Translates to: LPGGPCVCRSSEVLSFILSQGVL*ASCQHS
Trigger: AGAGTGCTGGCAACTGGCGCAGAGAACTCCCTGTGA...CAATATGAAAGACAGCACCTCACTGCTCCTGCAGACACAAGGGCCACCGGGGAG
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000099576.9
ENSMUST00000102547.10
ENSMUST00000161731.5
CDS-3UTR GCA 90 bp GACTTCCCAAAGAAGGCACAGGGGACTTTCTGCAGATGGCCTCAGAAGGAGATGCTACCTCAGTGGGGCTaGTGTCAGGGGACAGAGGTC +
Preference number: 4 (lower is better)
Translates to: DFPKKAQGTFCRWPQKEMLPQWG*CQGTEV
Trigger: GACCTCTGTCCCCTGACAGCAGCCCCACTGAGGTAG...CATCTCCTTCTGAGGCCATCTGCAGAAAGTCCCCTGTGCCTTCTTTGGGAAGTC
57% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 2 transcripts:
ENSMUST00000099576.9
ENSMUST00000102547.10
CDS-3UTR GCA 90 bp CTCCCCGGTGGCCCTTGTGTCTGCAGGAGCAGTGAGGTGCTGTCTTTCATATTGCCACCTCTCTGCCCCTaGATGTTTCCCATGGCTTTC +
Preference number: 4 (lower is better)
Translates to: LPGGPCVCRSSEVLSFILPPLCP*MFPMAF
Trigger: GAAAGCCATGGGAAACATGCAGGGGCAGAGAGGTGG...CAATATGAAAGACAGCACCTCACTGCTCCTGCAGACACAAGGGCCACCGGGGAG
57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000099576.9
ENSMUST00000102547.10
ENSMUST00000161731.5
CDS-3UTR GCA 90 bp AACTCCCCGGTGGCCCTTGTGTCTGCAGGAGCAGTGAGGTGCTGTCTTTCATATTTGACTTCCGAGTCCTaGTGCTCCACCTCTCTGCCC +
Preference number: 4 (lower is better)
Translates to: NSPVALVSAGAVRCCLSYLTSES*CSTSLP
Trigger: GGGCAGAGAGGTGGAGCAGCAGGACTCGGAAGTCAA...ATATGAAAGACAGCACCTCACTGCTCCTGCAGACACAAGGGCCACCGGGGAGTT
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000099576.9
ENSMUST00000102547.10
ENSMUST00000161731.5
CDS-3UTR CCA 90 bp TCTTTCAGGAACTCCCCGGTGGCCCTTGTGTCTGCAGGAGCAGTGAGGTGCTGTCCCCTGCTCTGTCTTTaGGCTCTTGAGAAGGTTCAC +
Preference number: 4 (lower is better)
Translates to: SFRNSPVALVSAGAVRCCPLLCL*ALEKVH
Trigger: GTGAACCTTCTCAAGAGCCCAAAGACAGAGCAGGGG...ACAGCACCTCACTGCTCCTGCAGACACAAGGGCCACCGGGGAGTTCCTGAAAGA
57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000081349.9
CDS-3UTR CCA 90 bp TCCCCGGTGGCCCTTGTGTCTGCAGGAGCAGTGAGGTGCTGTCTTTCATATTGTTGTCGTCCTGCTCTGTaGGGCTCTGGTCAGGGCTTT +
Preference number: 4 (lower is better)
Translates to: SPVALVSAGAVRCCLSYCCRPAL*GSGQGF
Trigger: AAAGCCCTGACCAGAGCCCCACAGAGCAGGACGACA...ACAATATGAAAGACAGCACCTCACTGCTCCTGCAGACACAAGGGCCACCGGGGA
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000081349.9
CDS-3UTR CCA 90 bp TCCCCGGTGGCCCTTGTGTCTGCAGGAGCAGTGAGGTGCTGTCTTTCATATTGTAGCTTGGAGTCTGCCTaGAGTCCTGTCGTCCTGCTC +
Preference number: 4 (lower is better)
Translates to: SPVALVSAGAVRCCLSYCSLESA*SPVVLL
Trigger: GAGCAGGACGACAGGACTCCAGGCAGACTCCAAGCT...ACAATATGAAAGACAGCACCTCACTGCTCCTGCAGACACAAGGGCCACCGGGGA
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000081349.9
ENSMUST00000099576.9
ENSMUST00000102547.10
CDS-3UTR CCA 90 bp TCCCCGGTGGCCCTTGTGTCTGCAGGAGCAGTGAGGTGCTGTCTTTCATATTGTCACAGGTGGTATGGGTaGTGCTGGAGGCAAAGGTCC +
Preference number: 4 (lower is better)
Translates to: SPVALVSAGAVRCCLSYCHRWYG*CWRQRS
Trigger: GGACCTTTGCCTCCAGCACCACCCATACCACCTGTG...ACAATATGAAAGACAGCACCTCACTGCTCCTGCAGACACAAGGGCCACCGGGGA
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000081349.9
ENSMUST00000099576.9
ENSMUST00000102547.10
ENSMUST00000161731.5
CDS-3UTR CCA 90 bp AACTCCCCGGTGGCCCTTGTGTCTGCAGGAGCAGTGAGGTGCTGTCTTTCATATCACAGGACACACAGGTaGTATGGGTGGTGCTGGAGG +
Preference number: 4 (lower is better)
Translates to: NSPVALVSAGAVRCCLSYHRTHR*YGWCWR
Trigger: CCTCCAGCACCACCCATACCACCTGTGTGTCCTGTG...ATATGAAAGACAGCACCTCACTGCTCCTGCAGACACAAGGGCCACCGGGGAGTT
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000081349.9
ENSMUST00000099576.9
ENSMUST00000102547.10
ENSMUST00000161731.5
CDS-3UTR CCA 90 bp TCCCCGGTGGCCCTTGTGTCTGCAGGAGCAGTGAGGTGCTGTCTTTCATATTGTAGGTGGTGGTGGTGGTaGTCCATCACTTGGAGGCAC +
Preference number: 4 (lower is better)
Translates to: SPVALVSAGAVRCCLSYCRWWWW*SITWRH
Trigger: GTGCCTCCAAGTGATGGACCACCACCACCACCACCT...ACAATATGAAAGACAGCACCTCACTGCTCCTGCAGACACAAGGGCCACCGGGGA
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000081349.9
ENSMUST00000099576.9
ENSMUST00000102547.10
ENSMUST00000161731.5
CDS-3UTR CCA 90 bp GTGGCCCTTGTGTCTGCAGGAGCAGTGAGGTGCTGTCTTTCATATTGTAACTTCCAGTCCAGGAGGAGGTaGGGGTGCAAGTCCTGGCGG +
Preference number: 4 (lower is better)
Translates to: VALVSAGAVRCCLSYCNFQSRRR*GCKSWR
Trigger: CCGCCAGGACTTGCACCCCCACCTCCTCCTGGACTG...GAAGTTACAATATGAAAGACAGCACCTCACTGCTCCTGCAGACACAAGGGCCAC
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000081349.9
ENSMUST00000099576.9
ENSMUST00000102547.10
ENSMUST00000161731.5
CDS-3UTR CCA 90 bp CAGGAACTCCCCGGTGGCCCTTGTGTCTGCAGGAGCAGTGAGGTGCTGTCTTTCCAGGAAGAAATCCTGTaGTTCAGGCAGCGGGAAAAC +
Preference number: 4 (lower is better)
Translates to: QELPGGPCVCRSSEVLSFQEEIL*FRQREN
Trigger: GTTTTCCCGCTGCCTGAACCACAGGATTTCTTCCTG...GAAAGACAGCACCTCACTGCTCCTGCAGACACAAGGGCCACCGGGGAGTTCCTG
57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000081349.9
ENSMUST00000099576.9
ENSMUST00000102547.10
ENSMUST00000161731.5
CDS-3UTR CCA 90 bp AACTCCCCGGTGGCCCTTGTGTCTGCAGGAGCAGTGAGGTGCTGTCTTTCATATGAGGCTGGTGATGTCTaGCCCCTCCCTGACTTGGTA +
Preference number: 4 (lower is better)
Translates to: NSPVALVSAGAVRCCLSYEAGDV*PLPDLV
Trigger: TACCAAGTCAGGGAGGGGCCAGACATCACCAGCCTC...ATATGAAAGACAGCACCTCACTGCTCCTGCAGACACAAGGGCCACCGGGGAGTT
57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000099576.9
ENSMUST00000102547.10
ENSMUST00000161731.5
CDS-3UTR CCA 90 bp CAGGAACTCCCCGGTGGCCCTTGTGTCTGCAGGAGCAGTGAGGTGCTGTCTTTCGTTTCTGGGAAAGTGTaGGTGGCCCTTGTGTTGAGA +
Preference number: 4 (lower is better)
Translates to: QELPGGPCVCRSSEVLSFVSGKV*VALVLR
Trigger: TCTCAACACAAGGGCCACCCACACTTTCCCAGAAAC...GAAAGACAGCACCTCACTGCTCCTGCAGACACAAGGGCCACCGGGGAGTTCCTG
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000099576.9
ENSMUST00000102547.10
ENSMUST00000161731.5
CDS-3UTR CCA 90 bp TCCCCGGTGGCCCTTGTGTCTGCAGGAGCAGTGAGGTGCTGTCTTTCATATTGTGGTGGCAACTGGTGCTaGGGTGGAGCTGTGATCTTC +
Preference number: 4 (lower is better)
Translates to: SPVALVSAGAVRCCLSYCGGNWC*GGAVIF
Trigger: GAAGATCACAGCTCCACCCCAGCACCAGTTGCCACC...ACAATATGAAAGACAGCACCTCACTGCTCCTGCAGACACAAGGGCCACCGGGGA
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000099576.9
ENSMUST00000102547.10
ENSMUST00000161731.5
CDS-3UTR TCA 90 bp AACTCCCCGGTGGCCCTTGTGTCTGCAGGAGCAGTGAGGTGCTGTCTTTCATATCAGCATCACAGGGCTTaGGGAAGGTCTCTCTGTCTG +
Preference number: 4 (lower is better)
Translates to: NSPVALVSAGAVRCCLSYQHHRA*GRSLCL
Trigger: CAGACAGAGAGACCTTCCTCAAGCCCTGTGATGCTG...ATATGAAAGACAGCACCTCACTGCTCCTGCAGACACAAGGGCCACCGGGGAGTT
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000081349.9
ENSMUST00000099576.9
ENSMUST00000102547.10
ENSMUST00000161731.5
CDS-3UTR TCA 90 bp TCCCCGGTGGCCCTTGTGTCTGCAGGAGCAGTGAGGTGCTGTCTTTCATATTGTGGCTGGAAGAAGAGCTaGGTCCAAAGGACAGTCCAG +
Preference number: 4 (lower is better)
Translates to: SPVALVSAGAVRCCLSYCGWKKS*VQRTVQ
Trigger: CTGGACTGTCCTTTGGACTCAGCTCTTCTTCCAGCC...ACAATATGAAAGACAGCACCTCACTGCTCCTGCAGACACAAGGGCCACCGGGGA
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000081349.9
ENSMUST00000099576.9
ENSMUST00000102547.10
ENSMUST00000161731.5
CDS-3UTR TCA 90 bp CAGGAACTCCCCGGTGGCCCTTGTGTCTGCAGGAGCAGTGAGGTGCTGTCTTTCCAGAAAATACAGCCCTaGAGATTATGCACTGGGCAC +
Preference number: 4 (lower is better)
Translates to: QELPGGPCVCRSSEVLSFQKIQP*RLCTGH
Trigger: GTGCCCAGTGCATAATCTTCAGGGCTGTATTTTCTG...GAAAGACAGCACCTCACTGCTCCTGCAGACACAAGGGCCACCGGGGAGTTCCTG
56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000081349.9
ENSMUST00000099576.9
ENSMUST00000102547.10
ENSMUST00000161731.5
CDS-3UTR TCA 90 bp CAGGAACTCCCCGGTGGCCCTTGTGTCTGCAGGAGCAGTGAGGTGCTGTCTTTCTCTCCTTCTCTGCTGTaGGCTTGTATAGCTCTGTCA +
Preference number: 4 (lower is better)
Translates to: QELPGGPCVCRSSEVLSFSPSLL*ACIALS
Trigger: TGACAGAGCTATACAAGCTCACAGCAGAGAAGGAGA...GAAAGACAGCACCTCACTGCTCCTGCAGACACAAGGGCCACCGGGGAGTTCCTG
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000099576.9
ENSMUST00000102547.10
ENSMUST00000161731.5
CDS-3UTR TCA 90 bp TCCCCGGTGGCCCTTGTGTCTGCAGGAGCAGTGAGGTGCTGTCTTTCATATTGTACCGAGGATGTTGTCTaGCCTCAGCAGACTGTCCAG +
Preference number: 4 (lower is better)
Translates to: SPVALVSAGAVRCCLSYCTEDVV*PQQTVQ
Trigger: CTGGACAGTCTGCTGAGGTCAGACAACATCCTCGGT...ACAATATGAAAGACAGCACCTCACTGCTCCTGCAGACACAAGGGCCACCGGGGA
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000099576.9
ENSMUST00000102547.10
ENSMUST00000161731.5
CDS-3UTR TCA 90 bp CCTTGCTTCCCTCTGTCTCAGAAGGTGGAGAGAAAACACTGCAAAGGTCTCATGCCCCATCTGAAATGCTaGCTCCTGGCAGCCACGCCC +
Preference number: 4 (lower is better)
Translates to: PCFPLSQKVERKHCKGLMPHLKC*LLAATP
Trigger: GGGCGTGGCTGCCAGGAGTCAGCATTTCAGATGGGG...CATGAGACCTTTGCAGTGTTTTCTCTCCACCTTCTGAGACAGAGGGAAGCAAGG
56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000099576.9
CDS-3UTR TCA 90 bp CTCCCCGGTGGCCCTTGTGTCTGCAGGAGCAGTGAGGTGCTGTCTTTCATATTGAGCCTCCCGGAACTATaGGTCTCAGTTTCACCTCCT +
Preference number: 4 (lower is better)
Translates to: LPGGPCVCRSSEVLSFILSLPEL*VSVSPP
Trigger: AGGAGGTGAAACTGAGACTCATAGTTCCGGGAGGCT...CAATATGAAAGACAGCACCTCACTGCTCCTGCAGACACAAGGGCCACCGGGGAG
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000099576.9
ENSMUST00000102547.10
ENSMUST00000161731.5
CDS-3UTR TCA 90 bp AACTCCCCGGTGGCCCTTGTGTCTGCAGGAGCAGTGAGGTGCTGTCTTTCATATGGGTGGCCCTTGTGTTaGGAGAGAAGCCCAACCTTT +
Preference number: 4 (lower is better)
Translates to: NSPVALVSAGAVRCCLSYGWPLC*ERSPTF
Trigger: AAAGGTTGGGCTTCTCTCTCAACACAAGGGCCACCC...ATATGAAAGACAGCACCTCACTGCTCCTGCAGACACAAGGGCCACCGGGGAGTT
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000099576.9
ENSMUST00000102547.10
ENSMUST00000161731.5
CDS-3UTR TCA 90 bp CTCCCCGGTGGCCCTTGTGTCTGCAGGAGCAGTGAGGTGCTGTCTTTCATATTGGACCTTCGTAGTAGATaGTGGCTCCAAGGTGTCAGC +
Preference number: 4 (lower is better)
Translates to: LPGGPCVCRSSEVLSFILDLRSR*WLQGVS
Trigger: GCTGACACCTTGGAGCCATCATCTACTACGAAGGTC...CAATATGAAAGACAGCACCTCACTGCTCCTGCAGACACAAGGGCCACCGGGGAG
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000099576.9
ENSMUST00000102547.10
ENSMUST00000161731.5
CDS-3UTR GCA 90 bp TCTTTCAGGAACTCCCCGGTGGCCCTTGTGTCTGCAGGAGCAGTGAGGTGCTGTTACAGTCTGGTCTGTTaGTGCGGGTGGGATTTGAGA +
Preference number: 4 (lower is better)
Translates to: SFRNSPVALVSAGAVRCCYSLVC*CGWDLR
Trigger: TCTCAAATCCCACCCGCAGCAACAGACCAGACTGTA...ACAGCACCTCACTGCTCCTGCAGACACAAGGGCCACCGGGGAGTTCCTGAAAGA
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000081349.9
CDS-3UTR GCA 90 bp CAGGAACTCCCCGGTGGCCCTTGTGTCTGCAGGAGCAGTGAGGTGCTGTCTTTCCTGGCTGCTTCTGGTTaGTTTGCTTTCAGCATCACA +
Preference number: 4 (lower is better)
Translates to: QELPGGPCVCRSSEVLSFLAASG*FAFSIT
Trigger: TGTGATGCTGAAAGCAAAGCAACCAGAAGCAGCCAG...GAAAGACAGCACCTCACTGCTCCTGCAGACACAAGGGCCACCGGGGAGTTCCTG
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000081349.9
ENSMUST00000099576.9
ENSMUST00000102547.10
ENSMUST00000161731.5
CDS-3UTR GCA 90 bp AACTCCCCGGTGGCCCTTGTGTCTGCAGGAGCAGTGAGGTGCTGTCTTTCATATGGATGTTCGTTTGGCTaGTGGCTGAGGCTGGTGATG +
Preference number: 4 (lower is better)
Translates to: NSPVALVSAGAVRCCLSYGCSFG*WLRLVM
Trigger: CATCACCAGCCTCAGCCAGCAGCCAAACGAACATCC...ATATGAAAGACAGCACCTCACTGCTCCTGCAGACACAAGGGCCACCGGGGAGTT
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000099576.9
ENSMUST00000102547.10
ENSMUST00000161731.5
CDS-3UTR GCA 90 bp TCTTTCAGGAACTCCCCGGTGGCCCTTGTGTCTGCAGGAGCAGTGAGGTGCTGTATTACTGACAGCTCCTaGAACTTTCCCTCCTGGCTC +
Preference number: 4 (lower is better)
Translates to: SFRNSPVALVSAGAVRCCITDSS*NFPSWL
Trigger: GAGCCAGGAGGGAAAGTTGCAGGAGCTGTCAGTAAT...ACAGCACCTCACTGCTCCTGCAGACACAAGGGCCACCGGGGAGTTCCTGAAAGA
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000099576.9
ENSMUST00000102547.10
ENSMUST00000161731.5
CDS-3UTR GCA 90 bp TCTTTCAGGAACTCCCCGGTGGCCCTTGTGTCTGCAGGAGCAGTGAGGTGCTGTGTTCTCTGCGCCAGTTaGCAGCACTCTGGAAATACT +
Preference number: 4 (lower is better)
Translates to: SFRNSPVALVSAGAVRCCVLCAS*QHSGNT
Trigger: AGTATTTCCAGAGTGCTGGCAACTGGCGCAGAGAAC...ACAGCACCTCACTGCTCCTGCAGACACAAGGGCCACCGGGGAGTTCCTGAAAGA
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000099576.9
ENSMUST00000102547.10
ENSMUST00000161731.5
CDS-3UTR GCA 90 bp AACTCCCCGGTGGCCCTTGTGTCTGCAGGAGCAGTGAGGTGCTGTCTTTCATATTCACAGGGAGTTCTCTaGGCCAGTTGCCAGCACTCT +
Preference number: 4 (lower is better)
Translates to: NSPVALVSAGAVRCCLSYSQGVL*ASCQHS
Trigger: AGAGTGCTGGCAACTGGCGCAGAGAACTCCCTGTGA...ATATGAAAGACAGCACCTCACTGCTCCTGCAGACACAAGGGCCACCGGGGAGTT
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000099576.9
ENSMUST00000102547.10
ENSMUST00000161731.5
CDS-3UTR GCA 90 bp CCGGTGGCCCTTGTGTCTGCAGGAGCAGTGAGGTGCTGTCTTTCATATTGTAACGCTGCTCCACCTCTCTaGCCCTGCATGTTTCCCATG +
Preference number: 4 (lower is better)
Translates to: PVALVSAGAVRCCLSYCNAAPPL*PCMFPM
Trigger: CATGGGAAACATGCAGGGGCAGAGAGGTGGAGCAGC...GTTACAATATGAAAGACAGCACCTCACTGCTCCTGCAGACACAAGGGCCACCGG
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000099576.9
ENSMUST00000102547.10
ENSMUST00000161731.5
CDS-3UTR GCA 90 bp GACTTCCCAAAGAAGGCACAGGGGACTTTCTGCAGATGGCCTCAGAAGGAGATGTTGACTTCCGAGTCCTaGTGCTCCACCTCTCTGCCC +
Preference number: 4 (lower is better)
Translates to: DFPKKAQGTFCRWPQKEMLTSES*CSTSLP
Trigger: GGGCAGAGAGGTGGAGCAGCAGGACTCGGAAGTCAA...CATCTCCTTCTGAGGCCATCTGCAGAAAGTCCCCTGTGCCTTCTTTGGGAAGTC
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000099576.9
ENSMUST00000102547.10
CDS-3UTR GCA 90 bp CCTTGCTTCCCTCTGTCTCAGAAGGTGGAGAGAAAACACTGCAAAGGTCTCATGGACTTGATCCCTGGCTaGTCCTCCTCCAGCCTCCCG +
Preference number: 4 (lower is better)
Translates to: PCFPLSQKVERKHCKGLMDLIPG*SSSSLP
Trigger: CGGGAGGCTGGAGGAGGAGCAGCCAGGGATCAAGTC...CATGAGACCTTTGCAGTGTTTTCTCTCCACCTTCTGAGACAGAGGGAAGCAAGG
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000099576.9
CDS-3UTR GCA 90 bp CAGGAACTCCCCGGTGGCCCTTGTGTCTGCAGGAGCAGTGAGGTGCTGTCTTTCCACTCTCTATCACCTTaGGGAGAACCTTGTTCACAG +
Preference number: 4 (lower is better)
Translates to: QELPGGPCVCRSSEVLSFHSLSP*GEPCSQ
Trigger: CTGTGAACAAGGTTCTCCGCAAGGTGATAGAGAGTG...GAAAGACAGCACCTCACTGCTCCTGCAGACACAAGGGCCACCGGGGAGTTCCTG
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000099576.9
ENSMUST00000102547.10
ENSMUST00000161731.5
CDS-3UTR GCA 90 bp TCCCCGGTGGCCCTTGTGTCTGCAGGAGCAGTGAGGTGCTGTCTTTCATATTGTTCAGGACCTACCGTGTaGGGCAGATCCAGAAGCAAG +
Preference number: 4 (lower is better)
Translates to: SPVALVSAGAVRCCLSYCSGPTV*GRSRSK
Trigger: CTTGCTTCTGGATCTGCCGCACACGGTAGGTCCTGA...ACAATATGAAAGACAGCACCTCACTGCTCCTGCAGACACAAGGGCCACCGGGGA
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000099576.9
ENSMUST00000102547.10
ENSMUST00000161731.5
CDS-3UTR CCA 90 bp ATGGCCTCAGAAGGAGATGAGCAAATGTCCCTAACTAGTCTTTCAGGAACTCCCCAGCCTGGTCCTGCCTaGGGCTGTGCTCTGCCGGAT +
Preference number: 4 (lower is better)
Translates to: MASEGDEQMSLTSLSGTPQPGPA*GCALPD
Trigger: ATCCGGCAGAGCACAGCCCCAGGCAGGACCAGGCTG...GGGAGTTCCTGAAAGACTAGTTAGGGACATTTGCTCATCTCCTTCTGAGGCCAT
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000081349.9
CDS-3UTR CCA 90 bp GACTTCCCAAAGAAGGCACAGGGGACTTTCTGCAGATGGCCTCAGAAGGAGATGGCTCTTCACTGTCTGTaGGCCTCCCTGTCCCAGAGA +
Preference number: 4 (lower is better)
Translates to: DFPKKAQGTFCRWPQKEMALHCL*ASLSQR
Trigger: TCTCTGGGACAGGGAGGCCCACAGACAGTGAAGAGC...CATCTCCTTCTGAGGCCATCTGCAGAAAGTCCCCTGTGCCTTCTTTGGGAAGTC
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000081349.9
CDS-3UTR CCA 90 bp CCGGTGGCCCTTGTGTCTGCAGGAGCAGTGAGGTGCTGTCTTTCATATTGTAACCCAGGAGAGTGGGAGTaGCCTTCGGATCAGTTGCTC +
Preference number: 4 (lower is better)
Translates to: PVALVSAGAVRCCLSYCNPGEWE*PSDQLL
Trigger: GAGCAACTGATCCGAAGGCCACTCCCACTCTCCTGG...GTTACAATATGAAAGACAGCACCTCACTGCTCCTGCAGACACAAGGGCCACCGG
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000081349.9
CDS-3UTR CCA 90 bp TCCCCGGTGGCCCTTGTGTCTGCAGGAGCAGTGAGGTGCTGTCTTTCATATTGTTGCTCTGTGGGGCTCTaGTCAGGGCTTTTGGGATCA +
Preference number: 4 (lower is better)
Translates to: SPVALVSAGAVRCCLSYCCSVGL*SGLLGS
Trigger: TGATCCCAAAAGCCCTGACCAGAGCCCCACAGAGCA...ACAATATGAAAGACAGCACCTCACTGCTCCTGCAGACACAAGGGCCACCGGGGA
56% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 1 transcripts:
ENSMUST00000081349.9
CDS-3UTR CCA 90 bp CAGGAACTCCCCGGTGGCCCTTGTGTCTGCAGGAGCAGTGAGGTGCTGTCTTTCTTTGAGGGAGAGAGCTaGGTTAAGGAGATAGTCAGC +
Preference number: 4 (lower is better)
Translates to: QELPGGPCVCRSSEVLSFFEGES*VKEIVS
Trigger: GCTGACTATCTCCTTAACCCAGCTCTCTCCCTCAAA...GAAAGACAGCACCTCACTGCTCCTGCAGACACAAGGGCCACCGGGGAGTTCCTG
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000081349.9
ENSMUST00000099576.9
ENSMUST00000102547.10
ENSMUST00000161731.5
CDS-3UTR CCA 90 bp TGGCTTCTACAGACACCAGGCACACAGGTGGTGCACATATATACACGTAGGCAATGGGAGGGGCGGAGGTaGAGGAATGAGAGGTGGAGG +
Preference number: 4 (lower is better)
Translates to: WLLQTPGTQVVHIYTRRQWEGRR*RNERWR
Trigger: CCTCCACCTCTCATTCCTCCACCTCCGCCCCTCCCA...TTGCCTACGTGTATATATGTGCACCACCTGTGTGCCTGGTGTCTGTAGAAGCCA
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000099576.9
CDS-3UTR CCA 90 bp GCCCTTGTGTCTGCAGGAGCAGTGAGGTGCTGTCTTTCATATTGTAACTTCCTTAGGTCCAAGTCCAGGTaGGAGGGGCGGAGGTGGAGG +
Preference number: 4 (lower is better)
Translates to: ALVSAGAVRCCLSYCNFLRSKSR*EGRRWR
Trigger: CCTCCACCTCCGCCCCTCCCACCTGGACTTGGACCT...AAGGAAGTTACAATATGAAAGACAGCACCTCACTGCTCCTGCAGACACAAGGGC
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000081349.9
ENSMUST00000099576.9
ENSMUST00000102547.10
ENSMUST00000161731.5
CDS-3UTR CCA 90 bp CCGGTGGCCCTTGTGTCTGCAGGAGCAGTGAGGTGCTGTCTTTCATATTGTAACAGGAGGTGGTGGTGGTaGTGGTCCATCACTTGGAGG +
Preference number: 4 (lower is better)
Translates to: PVALVSAGAVRCCLSYCNRRWWW*WSITWR
Trigger: CCTCCAAGTGATGGACCACCACCACCACCACCTCCT...GTTACAATATGAAAGACAGCACCTCACTGCTCCTGCAGACACAAGGGCCACCGG
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000081349.9
ENSMUST00000099576.9
ENSMUST00000102547.10
ENSMUST00000161731.5
CDS-3UTR CCA 90 bp TGCCCCAATCCCAACACACAACATTATGGTCTACTTCGTGTCAACCTGCAGGATCAGTCCAGGAGGAGGTaGGGGTGCAAGTCCTGGCGG +
Preference number: 4 (lower is better)
Translates to: CPNPNTQHYGLLRVNLQDQSRRR*GCKSWR
Trigger: CCGCCAGGACTTGCACCCCCACCTCCTCCTGGACTG...ATCCTGCAGGTTGACACGAAGTAGACCATAATGTTGTGTGTTGGGATTGGGGCA
56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000099576.9
CDS-3UTR CCA 90 bp ATGGCCTCAGAAGGAGATGAGCAAATGTCCCTAACTAGTCTTTCAGGAACTCCCCAGTCCAGGAGGAGGTaGGGGTGCAAGTCCTGGCGG +
Preference number: 4 (lower is better)
Translates to: MASEGDEQMSLTSLSGTPQSRRR*GCKSWR
Trigger: CCGCCAGGACTTGCACCCCCACCTCCTCCTGGACTG...GGGAGTTCCTGAAAGACTAGTTAGGGACATTTGCTCATCTCCTTCTGAGGCCAT
56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000081349.9
ENSMUST00000099576.9
ENSMUST00000102547.10
ENSMUST00000161731.5
CDS-3UTR CCA 90 bp CCGGTGGCCCTTGTGTCTGCAGGAGCAGTGAGGTGCTGTCTTTCATATTGTAACAGTTGGTGGCCACGCTaGCTTCCTTCTGACGCAGTC +
Preference number: 4 (lower is better)
Translates to: PVALVSAGAVRCCLSYCNSWWPR*LPSDAV
Trigger: GACTGCGTCAGAAGGAAGCCAGCGTGGCCACCAACT...GTTACAATATGAAAGACAGCACCTCACTGCTCCTGCAGACACAAGGGCCACCGG
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000081349.9
ENSMUST00000099576.9
ENSMUST00000102547.10
ENSMUST00000161731.5
CDS-3UTR CCA 90 bp CCGGTGGCCCTTGTGTCTGCAGGAGCAGTGAGGTGCTGTCTTTCATATTGTAACGAGGCTGGTGATGTCTaGCCCCTCCCTGACTTGGTA +
Preference number: 4 (lower is better)
Translates to: PVALVSAGAVRCCLSYCNEAGDV*PLPDLV
Trigger: TACCAAGTCAGGGAGGGGCCAGACATCACCAGCCTC...GTTACAATATGAAAGACAGCACCTCACTGCTCCTGCAGACACAAGGGCCACCGG
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000099576.9
ENSMUST00000102547.10
ENSMUST00000161731.5
CDS-3UTR CCA 90 bp CCGGTGGCCCTTGTGTCTGCAGGAGCAGTGAGGTGCTGTCTTTCATATTGTAACGCCTGGATGTTCGTTTaGCTGCTGGCTGAGGCTGGT +
Preference number: 4 (lower is better)
Translates to: PVALVSAGAVRCCLSYCNAWMFV*LLAEAG
Trigger: ACCAGCCTCAGCCAGCAGCCAAACGAACATCCAGGC...GTTACAATATGAAAGACAGCACCTCACTGCTCCTGCAGACACAAGGGCCACCGG
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000099576.9
ENSMUST00000102547.10
ENSMUST00000161731.5
CDS-3UTR CCA 90 bp CCGGTGGCCCTTGTGTCTGCAGGAGCAGTGAGGTGCTGTCTTTCATATTGTAACCACGCCCTTTCCTCCTaGTTCTCTTCTGCCGGAGCT +
Preference number: 4 (lower is better)
Translates to: PVALVSAGAVRCCLSYCNHALSS*FSSAGA
Trigger: AGCTCCGGCAGAAGAGAACCAGGAGGAAAGGGCGTG...GTTACAATATGAAAGACAGCACCTCACTGCTCCTGCAGACACAAGGGCCACCGG
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000099576.9
ENSMUST00000102547.10
ENSMUST00000161731.5
CDS-3UTR CCA 90 bp TTCCCAAAGAAGGCACAGGGGACTTTCTGCAGATGGCCTCAGAAGGAGATGAGCCCTGAGGATGTTGGCTaGGCAGCTCTCTCTTCTCCG +
Preference number: 4 (lower is better)
Translates to: FPKKAQGTFCRWPQKEMSPEDVG*AALSSP
Trigger: CGGAGAAGAGAGAGCTGCCCAGCCAACATCCTCAGG...GCTCATCTCCTTCTGAGGCCATCTGCAGAAAGTCCCCTGTGCCTTCTTTGGGAA
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000099576.9
ENSMUST00000102547.10
CDS-3UTR CCA 90 bp GACTTCCCAAAGAAGGCACAGGGGACTTTCTGCAGATGGCCTCAGAAGGAGATGCATCTCCTACCTCAGTaGGGCTGCTGTCAGGGGACA +
Preference number: 4 (lower is better)
Translates to: DFPKKAQGTFCRWPQKEMHLLPQ*GCCQGT
Trigger: TGTCCCCTGACAGCAGCCCCACTGAGGTAGGAGATG...CATCTCCTTCTGAGGCCATCTGCAGAAAGTCCCCTGTGCCTTCTTTGGGAAGTC
56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000099576.9
ENSMUST00000102547.10
CDS-3UTR CCA 90 bp TCTTTCAGGAACTCCCCGGTGGCCCTTGTGTCTGCAGGAGCAGTGAGGTGCTGTGTTTCTGGGAAAGTGTaGGTGGCCCTTGTGTTGAGA +
Preference number: 4 (lower is better)
Translates to: SFRNSPVALVSAGAVRCCVSGKV*VALVLR
Trigger: TCTCAACACAAGGGCCACCCACACTTTCCCAGAAAC...ACAGCACCTCACTGCTCCTGCAGACACAAGGGCCACCGGGGAGTTCCTGAAAGA
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000099576.9
ENSMUST00000102547.10
ENSMUST00000161731.5
CDS-3UTR CCA 90 bp TCTTTCAGGAACTCCCCGGTGGCCCTTGTGTCTGCAGGAGCAGTGAGGTGCTGTAGCCCAGCCTTCCTTTaGCTTCGAGTTTCTGGGAAA +
Preference number: 4 (lower is better)
Translates to: SFRNSPVALVSAGAVRCCSPAFL*LRVSGK
Trigger: TTTCCCAGAAACTCGAAGCCAAAGGAAGGCTGGGCT...ACAGCACCTCACTGCTCCTGCAGACACAAGGGCCACCGGGGAGTTCCTGAAAGA
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000099576.9
ENSMUST00000102547.10
ENSMUST00000161731.5
CDS-3UTR CCA 90 bp CTCCCCGGTGGCCCTTGTGTCTGCAGGAGCAGTGAGGTGCTGTCTTTCATATTGCTCACTAGGCAGTGGTaGGAGCAGAAGGATCCTATG +
Preference number: 4 (lower is better)
Translates to: LPGGPCVCRSSEVLSFILLTRQW*EQKDPM
Trigger: CATAGGATCCTTCTGCTCCCACCACTGCCTAGTGAG...CAATATGAAAGACAGCACCTCACTGCTCCTGCAGACACAAGGGCCACCGGGGAG
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000099576.9
ENSMUST00000102547.10
ENSMUST00000161731.5
CDS-3UTR CCA 90 bp TCTTTCAGGAACTCCCCGGTGGCCCTTGTGTCTGCAGGAGCAGTGAGGTGCTGTAGCTGTGATCTTCTCTaGCCCCAAGCCTTTTTCGGA +
Preference number: 4 (lower is better)
Translates to: SFRNSPVALVSAGAVRCCSCDLL*PQAFFG
Trigger: TCCGAAAAAGGCTTGGGGCCAGAGAAGATCACAGCT...ACAGCACCTCACTGCTCCTGCAGACACAAGGGCCACCGGGGAGTTCCTGAAAGA
56% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 3 transcripts:
ENSMUST00000099576.9
ENSMUST00000102547.10
ENSMUST00000161731.5
CDS-3UTR CCA 90 bp TCCCCGGTGGCCCTTGTGTCTGCAGGAGCAGTGAGGTGCTGTCTTTCATATTGTTTCAGAGGCAATACCTaGTGGCAACTGGTGCTGGGG +
Preference number: 4 (lower is better)
Translates to: SPVALVSAGAVRCCLSYCFRGNT*WQLVLG
Trigger: CCCCAGCACCAGTTGCCACCAGGTATTGCCTCTGAA...ACAATATGAAAGACAGCACCTCACTGCTCCTGCAGACACAAGGGCCACCGGGGA
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000099576.9
ENSMUST00000102547.10
CDS-3UTR CCA 90 bp TCCCCGGTGGCCCTTGTGTCTGCAGGAGCAGTGAGGTGCTGTCTTTCATATTGTTATTCTGGTGGCAACTaGTGCTGGGGTGGAGCTGTG +
Preference number: 4 (lower is better)
Translates to: SPVALVSAGAVRCCLSYCYSGGN*CWGGAV
Trigger: CACAGCTCCACCCCAGCACCAGTTGCCACCAGAATA...ACAATATGAAAGACAGCACCTCACTGCTCCTGCAGACACAAGGGCCACCGGGGA
56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000161731.5
CDS-3UTR CCA 90 bp CCGGTGGCCCTTGTGTCTGCAGGAGCAGTGAGGTGCTGTCTTTCATATTGTAACAGCAGCCTGGTATTCTaGTGGCAACTGGTGCTGGGG +
Preference number: 4 (lower is better)
Translates to: PVALVSAGAVRCCLSYCNSSLVF*WQLVLG
Trigger: CCCCAGCACCAGTTGCCACCAGAATACCAGGCTGCT...GTTACAATATGAAAGACAGCACCTCACTGCTCCTGCAGACACAAGGGCCACCGG
56% GC, longest homopolymer 4 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000161731.5
3UTR CAA 72 bp AGAGGCAGTCTCAGCAGTGTGTCTCACACAGGCTCCTaGGTGACAGTGGTGCTCTGTCCAAACACTGAAGGC +
Preference number: 4 (lower is better)
Translates to: RGSLSSVSHTGS*VTVVLCPNTEG
Trigger: GCCTTCAGTGTTTGGACAGAGCACCACTGTCACCAAGGAGCCTGTGTGAGACACACTGCTGAGACTGCCTCT
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000099576.9
CDS-3UTR TCA 90 bp CCGGTGGCCCTTGTGTCTGCAGGAGCAGTGAGGTGCTGTCTTTCATATTGTAACGATCTGCCTTTCCCCTaGCTTCCCTCAGATCCTGTC +
Preference number: 4 (lower is better)
Translates to: PVALVSAGAVRCCLSYCNDLPFP*LPSDPV
Trigger: GACAGGATCTGAGGGAAGTCAGGGGAAAGGCAGATC...GTTACAATATGAAAGACAGCACCTCACTGCTCCTGCAGACACAAGGGCCACCGG
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000081349.9
CDS-3UTR TCA 90 bp CCGGTGGCCCTTGTGTCTGCAGGAGCAGTGAGGTGCTGTCTTTCATATTGTAACGGCTGGAAGAAGAGCTaGGTCCAAAGGACAGTCCAG +
Preference number: 4 (lower is better)
Translates to: PVALVSAGAVRCCLSYCNGWKKS*VQRTVQ
Trigger: CTGGACTGTCCTTTGGACTCAGCTCTTCTTCCAGCC...GTTACAATATGAAAGACAGCACCTCACTGCTCCTGCAGACACAAGGGCCACCGG
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000081349.9
ENSMUST00000099576.9
ENSMUST00000102547.10
ENSMUST00000161731.5
CDS-3UTR TCA 90 bp TCTTTCAGGAACTCCCCGGTGGCCCTTGTGTCTGCAGGAGCAGTGAGGTGCTGTCAGAAAATACAGCCCTaGAGATTATGCACTGGGCAC +
Preference number: 4 (lower is better)
Translates to: SFRNSPVALVSAGAVRCCQKIQP*RLCTGH
Trigger: GTGCCCAGTGCATAATCTTCAGGGCTGTATTTTCTG...ACAGCACCTCACTGCTCCTGCAGACACAAGGGCCACCGGGGAGTTCCTGAAAGA
54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000081349.9
ENSMUST00000099576.9
ENSMUST00000102547.10
ENSMUST00000161731.5
CDS-3UTR TCA 90 bp CCGGTGGCCCTTGTGTCTGCAGGAGCAGTGAGGTGCTGTCTTTCATATTGTAACACACATAGCTGGGGGTaGCCTCCTTCTCTCCAGTCT +
Preference number: 4 (lower is better)
Translates to: PVALVSAGAVRCCLSYCNTHSWG*PPSLQS
Trigger: AGACTGGAGAGAAGGAGGTCACCCCCAGCTATGTGT...GTTACAATATGAAAGACAGCACCTCACTGCTCCTGCAGACACAAGGGCCACCGG
54% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 4 transcripts:
ENSMUST00000081349.9
ENSMUST00000099576.9
ENSMUST00000102547.10
ENSMUST00000161731.5
CDS-3UTR TCA 90 bp GACTTCCCAAAGAAGGCACAGGGGACTTTCTGCAGATGGCCTCAGAAGGAGATGTGTCTGGCCCCTCCCTaGCTTGGTAGCAGTTATGGA +
Preference number: 4 (lower is better)
Translates to: DFPKKAQGTFCRWPQKEMCLAPP*LGSSYG
Trigger: TCCATAACTGCTACCAAGTCAGGGAGGGGCCAGACA...CATCTCCTTCTGAGGCCATCTGCAGAAAGTCCCCTGTGCCTTCTTTGGGAAGTC
54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000099576.9
ENSMUST00000102547.10
CDS-3UTR TCA 90 bp GACTTCCCAAAGAAGGCACAGGGGACTTTCTGCAGATGGCCTCAGAAGGAGATGACCGAGGATGTTGTCTaGCCTCAGCAGACTGTCCAG +
Preference number: 4 (lower is better)
Translates to: DFPKKAQGTFCRWPQKEMTEDVV*PQQTVQ
Trigger: CTGGACAGTCTGCTGAGGTCAGACAACATCCTCGGT...CATCTCCTTCTGAGGCCATCTGCAGAAAGTCCCCTGTGCCTTCTTTGGGAAGTC
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000099576.9
ENSMUST00000102547.10
CDS-3UTR TCA 90 bp CTCCCCGGTGGCCCTTGTGTCTGCAGGAGCAGTGAGGTGCTGTCTTTCATATTGAGTGGCAAGGATTACTaGCAGCTCCTGCAACTTTCC +
Preference number: 4 (lower is better)
Translates to: LPGGPCVCRSSEVLSFILSGKDY*QLLQLS
Trigger: GGAAAGTTGCAGGAGCTGTCAGTAATCCTTGCCACT...CAATATGAAAGACAGCACCTCACTGCTCCTGCAGACACAAGGGCCACCGGGGAG
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000099576.9
ENSMUST00000102547.10
ENSMUST00000161731.5
CDS-3UTR TCA 90 bp ATGGCCTCAGAAGGAGATGAGCAAATGTCCCTAACTAGTCTTTCAGGAACTCCCCCCCATCTGAAATGCTaGCTCCTGGCAGCCACGCCC +
Preference number: 4 (lower is better)
Translates to: MASEGDEQMSLTSLSGTPPHLKC*LLAATP
Trigger: GGGCGTGGCTGCCAGGAGTCAGCATTTCAGATGGGG...GGGAGTTCCTGAAAGACTAGTTAGGGACATTTGCTCATCTCCTTCTGAGGCCAT
54% GC, longest homopolymer 7 nt, total homopolymer stretches 7 nt.
Matches the following 3 transcripts:
ENSMUST00000099576.9
ENSMUST00000102547.10
ENSMUST00000161731.5
CDS-3UTR TCA 90 bp TCCCCGGTGGCCCTTGTGTCTGCAGGAGCAGTGAGGTGCTGTCTTTCATATTGTAGCAGAAGGATCCTATaGTGCTGCTGTGGACTGGGA +
Preference number: 4 (lower is better)
Translates to: SPVALVSAGAVRCCLSYCSRRIL*CCCGLG
Trigger: TCCCAGTCCACAGCAGCATCATAGGATCCTTCTGCT...ACAATATGAAAGACAGCACCTCACTGCTCCTGCAGACACAAGGGCCACCGGGGA
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000099576.9
ENSMUST00000102547.10
ENSMUST00000161731.5
CDS-3UTR GCA 90 bp CAACTGTTTGGAACGCCCGGCCCAGGAGATCTAACAGCCTCCTGCTGGCTTCTAGGGCGTGGATGTCTTTaGTGTCTTTTGAGGGAGAGA +
Preference number: 4 (lower is better)
Translates to: QLFGTPGPGDLTASCWLLGRGCL*CLLRER
Trigger: TCTCTCCCTCAAAAGACAGCAAAGACATCCACGCCC...TAGAAGCCAGCAGGAGGCTGTTAGATCTCCTGGGCCGGGCGTTCCAAACAGTTG
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000099576.9
CDS-3UTR GCA 90 bp CCGGTGGCCCTTGTGTCTGCAGGAGCAGTGAGGTGCTGTCTTTCATATTGTAACGGATGTTCGTTTGGCTaGTGGCTGAGGCTGGTGATG +
Preference number: 4 (lower is better)
Translates to: PVALVSAGAVRCCLSYCNGCSFG*WLRLVM
Trigger: CATCACCAGCCTCAGCCAGCAGCCAAACGAACATCC...GTTACAATATGAAAGACAGCACCTCACTGCTCCTGCAGACACAAGGGCCACCGG
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000099576.9
ENSMUST00000102547.10
ENSMUST00000161731.5
CDS-3UTR GCA 90 bp ATGGCCTCAGAAGGAGATGAGCAAATGTCCCTAACTAGTCTTTCAGGAACTCCCGACTTGATCCCTGGCTaGTCCTCCTCCAGCCTCCCG +
Preference number: 4 (lower is better)
Translates to: MASEGDEQMSLTSLSGTPDLIPG*SSSSLP
Trigger: CGGGAGGCTGGAGGAGGAGCAGCCAGGGATCAAGTC...GGGAGTTCCTGAAAGACTAGTTAGGGACATTTGCTCATCTCCTTCTGAGGCCAT
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000099576.9
ENSMUST00000102547.10
ENSMUST00000161731.5
CDS-3UTR GCA 90 bp TGGCTTCTACAGACACCAGGCACACAGGTGGTGCACATATATACACGTAGGCAACCTGGTGGCAACTGGTaGTGGGGTGGAGCTGTGATC +
Preference number: 4 (lower is better)
Translates to: WLLQTPGTQVVHIYTRRQPGGNW*WGGAVI
Trigger: GATCACAGCTCCACCCCAGCACCAGTTGCCACCAGG...TTGCCTACGTGTATATATGTGCACCACCTGTGTGCCTGGTGTCTGTAGAAGCCA
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000099576.9
CDS-3UTR CCA 90 bp TTCCCAAAGAAGGCACAGGGGACTTTCTGCAGATGGCCTCAGAAGGAGATGAGCAAGATCAGGTGGAACTaGAGCCTCTGCCTGTGGCTG +
Preference number: 4 (lower is better)
Translates to: FPKKAQGTFCRWPQKEMSKIRWN*SLCLWL
Trigger: CAGCCACAGGCAGAGGCTCCAGTTCCACCTGATCTT...GCTCATCTCCTTCTGAGGCCATCTGCAGAAAGTCCCCTGTGCCTTCTTTGGGAA
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000081349.9
CDS-3UTR CCA 90 bp TCCCCGGTGGCCCTTGTGTCTGCAGGAGCAGTGAGGTGCTGTCTTTCATATTGTTGTGTCCTTTGTCTTTaGGGGTGGCCAGACAGCTTG +
Preference number: 4 (lower is better)
Translates to: SPVALVSAGAVRCCLSYCCVLCL*GWPDSL
Trigger: CAAGCTGTCTGGCCACCCCCAAAGACAAAGGACACA...ACAATATGAAAGACAGCACCTCACTGCTCCTGCAGACACAAGGGCCACCGGGGA
54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000081349.9
ENSMUST00000099576.9
ENSMUST00000102547.10
CDS-3UTR CCA 90 bp CAGGAACTCCCCGGTGGCCCTTGTGTCTGCAGGAGCAGTGAGGTGCTGTCTTTCTGTAGGATAGCAGCCTaGTATTCTGCTTCAGTGTAC +
Preference number: 4 (lower is better)
Translates to: QELPGGPCVCRSSEVLSFCRIAA*YSASVY
Trigger: GTACACTGAAGCAGAATACCAGGCTGCTATCCTACA...GAAAGACAGCACCTCACTGCTCCTGCAGACACAAGGGCCACCGGGGAGTTCCTG
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000081349.9
ENSMUST00000099576.9
ENSMUST00000102547.10
CDS-3UTR CCA 90 bp TTCCCAAAGAAGGCACAGGGGACTTTCTGCAGATGGCCTCAGAAGGAGATGAGCGACACACAGGTGGTATaGGTGGTGCTGGAGGCAAAG +
Preference number: 4 (lower is better)
Translates to: FPKKAQGTFCRWPQKEMSDTQVV*VVLEAK
Trigger: CTTTGCCTCCAGCACCACCCATACCACCTGTGTGTC...GCTCATCTCCTTCTGAGGCCATCTGCAGAAAGTCCCCTGTGCCTTCTTTGGGAA
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000081349.9
ENSMUST00000099576.9
ENSMUST00000102547.10
CDS-3UTR CCA 90 bp CCGGTGGCCCTTGTGTCTGCAGGAGCAGTGAGGTGCTGTCTTTCATATTGTAACGACACACAGGTGGTATaGGTGGTGCTGGAGGCAAAG +
Preference number: 4 (lower is better)
Translates to: PVALVSAGAVRCCLSYCNDTQVV*VVLEAK
Trigger: CTTTGCCTCCAGCACCACCCATACCACCTGTGTGTC...GTTACAATATGAAAGACAGCACCTCACTGCTCCTGCAGACACAAGGGCCACCGG
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000081349.9
ENSMUST00000099576.9
ENSMUST00000102547.10
ENSMUST00000161731.5
CDS-3UTR CCA 90 bp CTTGTGTCTGCAGGAGCAGTGAGGTGCTGTCTTTCATATTGTAACTTCCTTCTGAGGAGGCGGAGGAGGTaGCGGTGGCGACACAGGACA +
Preference number: 4 (lower is better)
Translates to: LVSAGAVRCCLSYCNFLLRRRRR*RWRHRT
Trigger: TGTCCTGTGTCGCCACCGCCACCTCCTCCGCCTCCT...CAGAAGGAAGTTACAATATGAAAGACAGCACCTCACTGCTCCTGCAGACACAAG
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000081349.9
ENSMUST00000099576.9
ENSMUST00000102547.10
ENSMUST00000161731.5
CDS-3UTR CCA 90 bp CAGGAACTCCCCGGTGGCCCTTGTGTCTGCAGGAGCAGTGAGGTGCTGTCTTTCCACGTTCGGCAAAATTaGGAATCTGGGCTAACTCAT +
Preference number: 4 (lower is better)
Translates to: QELPGGPCVCRSSEVLSFHVRQN*ESGLTH
Trigger: ATGAGTTAGCCCAGATTCCCAATTTTGCCGAACGTG...GAAAGACAGCACCTCACTGCTCCTGCAGACACAAGGGCCACCGGGGAGTTCCTG
54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000081349.9
ENSMUST00000099576.9
ENSMUST00000102547.10
ENSMUST00000161731.5
CDS-3UTR CCA 90 bp AGACTTCCCAAAGAAGGCACAGGGGACTTTCTGCAGATGGCCTCAGAAGGAGATCACGCCCTTTCCTCCTaGTTCTCTTCTGCCGGAGCT +
Preference number: 4 (lower is better)
Translates to: RLPKEGTGDFLQMASEGDHALSS*FSSAGA
Trigger: AGCTCCGGCAGAAGAGAACCAGGAGGAAAGGGCGTG...ATCTCCTTCTGAGGCCATCTGCAGAAAGTCCCCTGTGCCTTCTTTGGGAAGTCT
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000099576.9
ENSMUST00000102547.10
CDS-3UTR CCA 90 bp AACTCCCCGGTGGCCCTTGTGTCTGCAGGAGCAGTGAGGTGCTGTCTTTCATATAGACACATTTGGTTGTaGGGGCTCCTGCTGGTGAGA +
Preference number: 4 (lower is better)
Translates to: NSPVALVSAGAVRCCLSYRHIWL*GLLLVR
Trigger: TCTCACCAGCAGGAGCCCCCACAACCAAATGTGTCT...ATATGAAAGACAGCACCTCACTGCTCCTGCAGACACAAGGGCCACCGGGGAGTT
54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000099576.9
ENSMUST00000102547.10
ENSMUST00000161731.5
CDS-3UTR CCA 90 bp CAGGAACTCCCCGGTGGCCCTTGTGTCTGCAGGAGCAGTGAGGTGCTGTCTTTCTCTTGGCCACCACTTTaGAAACAGGTTTCTTACTGC +
Preference number: 4 (lower is better)
Translates to: QELPGGPCVCRSSEVLSFSWPPL*KQVSYC
Trigger: GCAGTAAGAAACCTGTTTCCAAAGTGGTGGCCAAGA...GAAAGACAGCACCTCACTGCTCCTGCAGACACAAGGGCCACCGGGGAGTTCCTG
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000099576.9
ENSMUST00000102547.10
ENSMUST00000161731.5
CDS-3UTR CCA 90 bp TTCCCAAAGAAGGCACAGGGGACTTTCTGCAGATGGCCTCAGAAGGAGATGAGCCTCAGTTTGGGTCTCTaGGCCATAGGCAACCCTTCC +
Preference number: 4 (lower is better)
Translates to: FPKKAQGTFCRWPQKEMSLSLGL*AIGNPS
Trigger: GGAAGGGTTGCCTATGGCCCAGAGACCCAAACTGAG...GCTCATCTCCTTCTGAGGCCATCTGCAGAAAGTCCCCTGTGCCTTCTTTGGGAA
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000099576.9
ENSMUST00000102547.10
CDS-3UTR CCA 90 bp CCGGTGGCCCTTGTGTCTGCAGGAGCAGTGAGGTGCTGTCTTTCATATTGTAACCTCAGTTTCACCTCCTaGGAGGGTGAGGAAGTCAGC +
Preference number: 4 (lower is better)
Translates to: PVALVSAGAVRCCLSYCNLSFTS*EGEEVS
Trigger: GCTGACTTCCTCACCCTCCCAGGAGGTGAAACTGAG...GTTACAATATGAAAGACAGCACCTCACTGCTCCTGCAGACACAAGGGCCACCGG
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000099576.9
ENSMUST00000102547.10
ENSMUST00000161731.5
CDS-3UTR CCA 90 bp CCGGTGGCCCTTGTGTCTGCAGGAGCAGTGAGGTGCTGTCTTTCATATTGTAACTCCCTCACTAGGCAGTaGTGGGAGCAGAAGGATCCT +
Preference number: 4 (lower is better)
Translates to: PVALVSAGAVRCCLSYCNSLTRQ*WEQKDP
Trigger: AGGATCCTTCTGCTCCCACCACTGCCTAGTGAGGGA...GTTACAATATGAAAGACAGCACCTCACTGCTCCTGCAGACACAAGGGCCACCGG
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000099576.9
ENSMUST00000102547.10
ENSMUST00000161731.5
CDS-3UTR CCA 90 bp TTCCCAAAGAAGGCACAGGGGACTTTCTGCAGATGGCCTCAGAAGGAGATGAGCCAGAAATGGACAGGGTaGTCCGGCTCTGTAACCAGG +
Preference number: 4 (lower is better)
Translates to: FPKKAQGTFCRWPQKEMSQKWTG*SGSVTR
Trigger: CCTGGTTACAGAGCCGGACCACCCTGTCCATTTCTG...GCTCATCTCCTTCTGAGGCCATCTGCAGAAAGTCCCCTGTGCCTTCTTTGGGAA
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000099576.9
ENSMUST00000102547.10
CDS-3UTR TCA 90 bp TCCCCGGTGGCCCTTGTGTCTGCAGGAGCAGTGAGGTGCTGTCTTTCATATTGTGGAGGTCTTCAAACTTaGCTTGAGAGGCCAGGAAGA +
Preference number: 4 (lower is better)
Translates to: SPVALVSAGAVRCCLSYCGGLQT*LERPGR
Trigger: TCTTCCTGGCCTCTCAAGTCAAGTTTGAAGACCTCC...ACAATATGAAAGACAGCACCTCACTGCTCCTGCAGACACAAGGGCCACCGGGGA
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000081349.9
ENSMUST00000099576.9
ENSMUST00000102547.10
ENSMUST00000161731.5
CDS-3UTR TCA 90 bp AGACTTCCCAAAGAAGGCACAGGGGACTTTCTGCAGATGGCCTCAGAAGGAGATACACATAGCTGGGGGTaGCCTCCTTCTCTCCAGTCT +
Preference number: 4 (lower is better)
Translates to: RLPKEGTGDFLQMASEGDTHSWG*PPSLQS
Trigger: AGACTGGAGAGAAGGAGGTCACCCCCAGCTATGTGT...ATCTCCTTCTGAGGCCATCTGCAGAAAGTCCCCTGTGCCTTCTTTGGGAAGTCT
53% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000081349.9
ENSMUST00000099576.9
ENSMUST00000102547.10
CDS-3UTR TCA 90 bp TCTTTCAGGAACTCCCCGGTGGCCCTTGTGTCTGCAGGAGCAGTGAGGTGCTGTGCTTCCAAATGGTCTTaGAGTCACTGCAGAACTCAA +
Preference number: 4 (lower is better)
Translates to: SFRNSPVALVSAGAVRCCASKWS*SHCRTQ
Trigger: TTGAGTTCTGCAGTGACTTCAAGACCATTTGGAAGC...ACAGCACCTCACTGCTCCTGCAGACACAAGGGCCACCGGGGAGTTCCTGAAAGA
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000081349.9
ENSMUST00000099576.9
ENSMUST00000102547.10
ENSMUST00000161731.5
CDS-3UTR TCA 90 bp GCCCTTGTGTCTGCAGGAGCAGTGAGGTGCTGTCTTTCATATTGTAACTTCCTTAGGCGAGGGAACAGGTaGCAGCCGTTTGTGTGCGCT +
Preference number: 4 (lower is better)
Translates to: ALVSAGAVRCCLSYCNFLRRGNR*QPFVCA
Trigger: AGCGCACACAAACGGCTGTCACCTGTTCCCTCGCCT...AAGGAAGTTACAATATGAAAGACAGCACCTCACTGCTCCTGCAGACACAAGGGC
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000099576.9
ENSMUST00000102547.10
ENSMUST00000161731.5
CDS-3UTR TCA 90 bp TTCCCAAAGAAGGCACAGGGGACTTTCTGCAGATGGCCTCAGAAGGAGATGAGCAGCAGAAGGATCCTATaGTGCTGCTGTGGACTGGGA +
Preference number: 4 (lower is better)
Translates to: FPKKAQGTFCRWPQKEMSSRRIL*CCCGLG
Trigger: TCCCAGTCCACAGCAGCATCATAGGATCCTTCTGCT...GCTCATCTCCTTCTGAGGCCATCTGCAGAAAGTCCCCTGTGCCTTCTTTGGGAA
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000099576.9
ENSMUST00000102547.10
CDS-3UTR TCA 90 bp GCATTGTTCTTGTGGATTGACAAGAGACTTCCCAAAGAAGGCACAGGGGACTTTGCTGGGGTGGAGCTGTaGTCTTCTCTGGCCCCAAGC +
Preference number: 4 (lower is better)
Translates to: ALFLWIDKRLPKEGTGDFAGVEL*SSLAPS
Trigger: GCTTGGGGCCAGAGAAGATCACAGCTCCACCCCAGC...AAAGTCCCCTGTGCCTTCTTTGGGAAGTCTCTTGTCAATCCACAAGAACAATGC
53% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 2 transcripts:
ENSMUST00000099576.9
ENSMUST00000102547.10
CDS-3UTR GCA 90 bp GCATTGTTCTTGTGGATTGACAAGAGACTTCCCAAAGAAGGCACAGGGGACTTTTCCTGCCTGGGGCTGTaGTCTGCCGGATGGCTACCA +
Preference number: 4 (lower is better)
Translates to: ALFLWIDKRLPKEGTGDFSCLGL*SAGWLP
Trigger: TGGTAGCCATCCGGCAGAGCACAGCCCCAGGCAGGA...AAAGTCCCCTGTGCCTTCTTTGGGAAGTCTCTTGTCAATCCACAAGAACAATGC
53% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 1 transcripts:
ENSMUST00000081349.9
CDS-3UTR GCA 90 bp GACTTCCCAAAGAAGGCACAGGGGACTTTCTGCAGATGGCCTCAGAAGGAGATGAGTCTCTGGTGTTCTTaGCTTCACCTGACCACCCTG +
Preference number: 4 (lower is better)
Translates to: DFPKKAQGTFCRWPQKEMSLWCS*LHLTTL
Trigger: CAGGGTGGTCAGGTGAAGGCAAGAACACCAGAGACT...CATCTCCTTCTGAGGCCATCTGCAGAAAGTCCCCTGTGCCTTCTTTGGGAAGTC
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000081349.9
CDS-3UTR GCA 90 bp AACTCCCCGGTGGCCCTTGTGTCTGCAGGAGCAGTGAGGTGCTGTCTTTCATATGGGCGTGGATGTCTTTaGTGTCTTTTGAGGGAGAGA +
Preference number: 4 (lower is better)
Translates to: NSPVALVSAGAVRCCLSYGRGCL*CLLRER
Trigger: TCTCTCCCTCAAAAGACAGCAAAGACATCCACGCCC...ATATGAAAGACAGCACCTCACTGCTCCTGCAGACACAAGGGCCACCGGGGAGTT
53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000081349.9
ENSMUST00000099576.9
ENSMUST00000102547.10
ENSMUST00000161731.5
CDS-3UTR GCA 90 bp CTCTTGGGGATCACCATGTACCTCTTTTCTCATGACAAGGGTATATACTGGAAGAGGAGGAGGTGGGGGTaGAAGTCCTGGCGGAGGAGG +
Preference number: 4 (lower is better)
Translates to: LLGITMYLFSHDKGIYWKRRRWG*KSWRRR
Trigger: CCTCCTCCGCCAGGACTTGCACCCCCACCTCCTCCT...CTTCCAGTATATACCCTTGTCATGAGAAAAGAGGTACATGGTGATCCCCAAGAG
53% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 3 transcripts:
ENSMUST00000081349.9
ENSMUST00000099576.9
ENSMUST00000102547.10
CDS-3UTR GCA 90 bp ATGGCCTCAGAAGGAGATGAGCAAATGTCCCTAACTAGTCTTTCAGGAACTCCCCTACCTCAGTGGGGCTaGTGTCAGGGGACAGAGGTC +
Preference number: 4 (lower is better)
Translates to: MASEGDEQMSLTSLSGTPLPQWG*CQGTEV
Trigger: GACCTCTGTCCCCTGACAGCAGCCCCACTGAGGTAG...GGGAGTTCCTGAAAGACTAGTTAGGGACATTTGCTCATCTCCTTCTGAGGCCAT
53% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 3 transcripts:
ENSMUST00000099576.9
ENSMUST00000102547.10
ENSMUST00000161731.5
CDS-3UTR GCA 90 bp GCATTGTTCTTGTGGATTGACAAGAGACTTCCCAAAGAAGGCACAGGGGACTTTGACTTGATCCCTGGCTaGTCCTCCTCCAGCCTCCCG +
Preference number: 4 (lower is better)
Translates to: ALFLWIDKRLPKEGTGDFDLIPG*SSSSLP
Trigger: CGGGAGGCTGGAGGAGGAGCAGCCAGGGATCAAGTC...AAAGTCCCCTGTGCCTTCTTTGGGAAGTCTCTTGTCAATCCACAAGAACAATGC
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000099576.9
ENSMUST00000102547.10
CDS-3UTR GCA 90 bp AACTCCCCGGTGGCCCTTGTGTCTGCAGGAGCAGTGAGGTGCTGTCTTTCATATAATTTATGGCCACTCTaGGGTAGCCCAGCCTTCCTT +
Preference number: 4 (lower is better)
Translates to: NSPVALVSAGAVRCCLSYNLWPL*GSPAFL
Trigger: AAGGAAGGCTGGGCTACCGCAGAGTGGCCATAAATT...ATATGAAAGACAGCACCTCACTGCTCCTGCAGACACAAGGGCCACCGGGGAGTT
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000099576.9
ENSMUST00000102547.10
ENSMUST00000161731.5
CDS-3UTR GCA 90 bp GCCCTTGTGTCTGCAGGAGCAGTGAGGTGCTGTCTTTCATATTGTAACTTCCTTCCTGGTGGCAACTGGTaGTGGGGTGGAGCTGTGATC +
Preference number: 4 (lower is better)
Translates to: ALVSAGAVRCCLSYCNFLPGGNW*WGGAVI
Trigger: GATCACAGCTCCACCCCAGCACCAGTTGCCACCAGG...AAGGAAGTTACAATATGAAAGACAGCACCTCACTGCTCCTGCAGACACAAGGGC
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000099576.9
ENSMUST00000102547.10
CDS-3UTR GCA 90 bp TCTTTCAGGAACTCCCCGGTGGCCCTTGTGTCTGCAGGAGCAGTGAGGTGCTGTAGGTCTTTTGCCGTCTaGTCTTTGAAGTTGTCACAG +
Preference number: 4 (lower is better)
Translates to: SFRNSPVALVSAGAVRCCRSFAV*SLKLSQ
Trigger: CTGTGACAACTTCAAAGAGCAGACGGCAAAAGACCT...ACAGCACCTCACTGCTCCTGCAGACACAAGGGCCACCGGGGAGTTCCTGAAAGA
53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000099576.9
ENSMUST00000102547.10
CDS-3UTR CCA 90 bp TCTTTCAGGAACTCCCCGGTGGCCCTTGTGTCTGCAGGAGCAGTGAGGTGCTGTATTTTTAAGATCAGGTaGAACTGGAGCCTCTGCCTG +
Preference number: 4 (lower is better)
Translates to: SFRNSPVALVSAGAVRCCIFKIR*NWSLCL
Trigger: CAGGCAGAGGCTCCAGTTCCACCTGATCTTAAAAAT...ACAGCACCTCACTGCTCCTGCAGACACAAGGGCCACCGGGGAGTTCCTGAAAGA
53% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000081349.9
CDS-3UTR CCA 90 bp TTCCCAAAGAAGGCACAGGGGACTTTCTGCAGATGGCCTCAGAAGGAGATGAGCCCCACTGAAGAAAGCTaGAAGCTGGAAGGGCTTCTC +
Preference number: 4 (lower is better)
Translates to: FPKKAQGTFCRWPQKEMSPTEES*KLEGLL
Trigger: GAGAAGCCCTTCCAGCTTCCAGCTTTCTTCAGTGGG...GCTCATCTCCTTCTGAGGCCATCTGCAGAAAGTCCCCTGTGCCTTCTTTGGGAA
53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000081349.9
CDS-3UTR CCA 90 bp ATGGCCTCAGAAGGAGATGAGCAAATGTCCCTAACTAGTCTTTCAGGAACTCCCGGTGGCCAGACAGCTTaGAGTCTGCCTGGAGTCCTG +
Preference number: 4 (lower is better)
Translates to: MASEGDEQMSLTSLSGTPGGQTA*SLPGVL
Trigger: CAGGACTCCAGGCAGACTCCAAGCTGTCTGGCCACC...GGGAGTTCCTGAAAGACTAGTTAGGGACATTTGCTCATCTCCTTCTGAGGCCAT
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000081349.9
ENSMUST00000099576.9
ENSMUST00000102547.10
CDS-3UTR CCA 90 bp CAACTGTTTGGAACGCCCGGCCCAGGAGATCTAACAGCCTCCTGCTGGCTTCTAGTCTGGAATGGGGCGTaGATGTCTTTGCTGTCTTTT +
Preference number: 4 (lower is better)
Translates to: QLFGTPGPGDLTASCWLLVWNGA*MSLLSF
Trigger: AAAAGACAGCAAAGACATCCACGCCCCATTCCAGAC...TAGAAGCCAGCAGGAGGCTGTTAGATCTCCTGGGCCGGGCGTTCCAAACAGTTG
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000099576.9
CDS-3UTR CCA 90 bp AGACTTCCCAAAGAAGGCACAGGGGACTTTCTGCAGATGGCCTCAGAAGGAGATGACACACAGGTGGTATaGGTGGTGCTGGAGGCAAAG +
Preference number: 4 (lower is better)
Translates to: RLPKEGTGDFLQMASEGDDTQVV*VVLEAK
Trigger: CTTTGCCTCCAGCACCACCCATACCACCTGTGTGTC...ATCTCCTTCTGAGGCCATCTGCAGAAAGTCCCCTGTGCCTTCTTTGGGAAGTCT
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000081349.9
ENSMUST00000099576.9
ENSMUST00000102547.10
CDS-3UTR CCA 90 bp CTCTTGGGGATCACCATGTACCTCTTTTCTCATGACAAGGGTATATACTGGAAGAGGAGGCGGAGGAGGTaGCGGTGGCGACACAGGACA +
Preference number: 4 (lower is better)
Translates to: LLGITMYLFSHDKGIYWKRRRRR*RWRHRT
Trigger: TGTCCTGTGTCGCCACCGCCACCTCCTCCGCCTCCT...CTTCCAGTATATACCCTTGTCATGAGAAAAGAGGTACATGGTGATCCCCAAGAG
53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000081349.9
ENSMUST00000099576.9
ENSMUST00000102547.10
CDS-3UTR CCA 90 bp GTGGCCCTTGTGTCTGCAGGAGCAGTGAGGTGCTGTCTTTCATATTGTAACTTCAGGAGGTGGTGGTGGTaGTGGTCCATCACTTGGAGG +
Preference number: 4 (lower is better)
Translates to: VALVSAGAVRCCLSYCNFRRWWW*WSITWR
Trigger: CCTCCAAGTGATGGACCACCACCACCACCACCTCCT...GAAGTTACAATATGAAAGACAGCACCTCACTGCTCCTGCAGACACAAGGGCCAC
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000081349.9
ENSMUST00000099576.9
ENSMUST00000102547.10
ENSMUST00000161731.5
CDS-3UTR CCA 90 bp GTGGCCCTTGTGTCTGCAGGAGCAGTGAGGTGCTGTCTTTCATATTGTAACTTCTGGAGGAGGTGGTGGTaGTGGTGGTCCATCACTTGG +
Preference number: 4 (lower is better)
Translates to: VALVSAGAVRCCLSYCNFWRRWW*WWSITW
Trigger: CCAAGTGATGGACCACCACCACCACCACCTCCTCCA...GAAGTTACAATATGAAAGACAGCACCTCACTGCTCCTGCAGACACAAGGGCCAC
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000081349.9
ENSMUST00000099576.9
ENSMUST00000102547.10
ENSMUST00000161731.5
CDS-3UTR CCA 90 bp CTCTTGGGGATCACCATGTACCTCTTTTCTCATGACAAGGGTATATACTGGAAGTGGGGGTGCAAGTCCTaGCGGAGGAGGAGGTGGAGG +
Preference number: 4 (lower is better)
Translates to: LLGITMYLFSHDKGIYWKWGCKS*RRRRWR
Trigger: CCTCCACCTCCTCCTCCGCCAGGACTTGCACCCCCA...CTTCCAGTATATACCCTTGTCATGAGAAAAGAGGTACATGGTGATCCCCAAGAG
53% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 3 transcripts:
ENSMUST00000081349.9
ENSMUST00000099576.9
ENSMUST00000102547.10
CDS-3UTR CCA 90 bp GTGGCCCTTGTGTCTGCAGGAGCAGTGAGGTGCTGTCTTTCATATTGTAACTTCTGGACTGGGACACCTTaGAGACAGAGGCGAGGGAAC +
Preference number: 4 (lower is better)
Translates to: VALVSAGAVRCCLSYCNFWTGTP*RQRRGN
Trigger: GTTCCCTCGCCTCTGTCTCCAAGGTGTCCCAGTCCA...GAAGTTACAATATGAAAGACAGCACCTCACTGCTCCTGCAGACACAAGGGCCAC
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000099576.9
ENSMUST00000102547.10
ENSMUST00000161731.5
CDS-3UTR TCA 90 bp CTCCCCGGTGGCCCTTGTGTCTGCAGGAGCAGTGAGGTGCTGTCTTTCATATTGTCAGGTAAAGTTCTCTaGGACTCTTCAGCACAGAGT +
Preference number: 4 (lower is better)
Translates to: LPGGPCVCRSSEVLSFILSGKVL*DSSAQS
Trigger: ACTCTGTGCTGAAGAGTCTCAGAGAACTTTACCTGA...CAATATGAAAGACAGCACCTCACTGCTCCTGCAGACACAAGGGCCACCGGGGAG
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000081349.9
CDS-3UTR TCA 90 bp GCCCTTGTGTCTGCAGGAGCAGTGAGGTGCTGTCTTTCATATTGTAACTTCCTTGCACACGGAGCCCACTaGAGAAAGCTGGAAGCTGGA +
Preference number: 4 (lower is better)
Translates to: ALVSAGAVRCCLSYCNFLAHGAH*RKLEAG
Trigger: TCCAGCTTCCAGCTTTCTTCAGTGGGCTCCGTGTGC...AAGGAAGTTACAATATGAAAGACAGCACCTCACTGCTCCTGCAGACACAAGGGC
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000081349.9
CDS-3UTR TCA 90 bp TTCCCAAAGAAGGCACAGGGGACTTTCTGCAGATGGCCTCAGAAGGAGATGAGCGGGGATATCTTATGCTaGCTAGATGAGGAGGTGCCT +
Preference number: 4 (lower is better)
Translates to: FPKKAQGTFCRWPQKEMSGDILC*LDEEVP
Trigger: AGGCACCTCCTCATCTAGTCAGCATAAGATATCCCC...GCTCATCTCCTTCTGAGGCCATCTGCAGAAAGTCCCCTGTGCCTTCTTTGGGAA
52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000081349.9
ENSMUST00000099576.9
ENSMUST00000102547.10
CDS-3UTR TCA 90 bp AACTCCCCGGTGGCCCTTGTGTCTGCAGGAGCAGTGAGGTGCTGTCTTTCATATCAGAAAATACAGCCCTaGAGATTATGCACTGGGCAC +
Preference number: 4 (lower is better)
Translates to: NSPVALVSAGAVRCCLSYQKIQP*RLCTGH
Trigger: GTGCCCAGTGCATAATCTTCAGGGCTGTATTTTCTG...ATATGAAAGACAGCACCTCACTGCTCCTGCAGACACAAGGGCCACCGGGGAGTT
52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000081349.9
ENSMUST00000099576.9
ENSMUST00000102547.10
ENSMUST00000161731.5
CDS-3UTR TCA 90 bp GACTTCCCAAAGAAGGCACAGGGGACTTTCTGCAGATGGCCTCAGAAGGAGATGGGAGGTCTTCAAACTTaGCTTGAGAGGCCAGGAAGA +
Preference number: 4 (lower is better)
Translates to: DFPKKAQGTFCRWPQKEMGGLQT*LERPGR
Trigger: TCTTCCTGGCCTCTCAAGTCAAGTTTGAAGACCTCC...CATCTCCTTCTGAGGCCATCTGCAGAAAGTCCCCTGTGCCTTCTTTGGGAAGTC
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000081349.9
ENSMUST00000099576.9
ENSMUST00000102547.10
CDS-3UTR TCA 90 bp GTGGCCCTTGTGTCTGCAGGAGCAGTGAGGTGCTGTCTTTCATATTGTAACTTCACACATAGCTGGGGGTaGCCTCCTTCTCTCCAGTCT +
Preference number: 4 (lower is better)
Translates to: VALVSAGAVRCCLSYCNFTHSWG*PPSLQS
Trigger: AGACTGGAGAGAAGGAGGTCACCCCCAGCTATGTGT...GAAGTTACAATATGAAAGACAGCACCTCACTGCTCCTGCAGACACAAGGGCCAC
52% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 4 transcripts:
ENSMUST00000081349.9
ENSMUST00000099576.9
ENSMUST00000102547.10
ENSMUST00000161731.5
CDS-3UTR TCA 90 bp CTCCCCGGTGGCCCTTGTGTCTGCAGGAGCAGTGAGGTGCTGTCTTTCATATTGTTGCTGACGGATGCCTaGGCCATTTTCAATCTTTCT +
Preference number: 4 (lower is better)
Translates to: LPGGPCVCRSSEVLSFILLLTDA*AIFNLS
Trigger: AGAAAGATTGAAAATGGCTCAGGCATCCGTCAGCAA...CAATATGAAAGACAGCACCTCACTGCTCCTGCAGACACAAGGGCCACCGGGGAG
52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000081349.9
ENSMUST00000099576.9
ENSMUST00000102547.10
ENSMUST00000161731.5
CDS-3UTR TCA 90 bp TCTTTCAGGAACTCCCCGGTGGCCCTTGTGTCTGCAGGAGCAGTGAGGTGCTGTTTGGAAGATAGAAGCTaGTATAGCAGAGTTCGGCAA +
Preference number: 4 (lower is better)
Translates to: SFRNSPVALVSAGAVRCCLEDRS*YSRVRQ
Trigger: TTGCCGAACTCTGCTATATCAGCTTCTATCTTCCAA...ACAGCACCTCACTGCTCCTGCAGACACAAGGGCCACCGGGGAGTTCCTGAAAGA
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000099576.9
ENSMUST00000102547.10
ENSMUST00000161731.5
CDS-3UTR TCA 90 bp TCCCCGGTGGCCCTTGTGTCTGCAGGAGCAGTGAGGTGCTGTCTTTCATATTGTTACAGTGCCCTTGTATaGAAATCCTCTGACTTCCCC +
Preference number: 4 (lower is better)
Translates to: SPVALVSAGAVRCCLSYCYSALV*KSSDFP
Trigger: GGGGAAGTCAGAGGATTTTCATACAAGGGCACTGTA...ACAATATGAAAGACAGCACCTCACTGCTCCTGCAGACACAAGGGCCACCGGGGA
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000099576.9
ENSMUST00000102547.10
ENSMUST00000161731.5
CDS-3UTR GCA 90 bp CCGGTGGCCCTTGTGTCTGCAGGAGCAGTGAGGTGCTGTCTTTCATATTGTAACGATCCCCCTCTAAACTaGGAAATGCCTTCAGCACAG +
Preference number: 4 (lower is better)
Translates to: PVALVSAGAVRCCLSYCNDPPLN*EMPSAQ
Trigger: CTGTGCTGAAGGCATTTCGCAGTTTAGAGGGGGATC...GTTACAATATGAAAGACAGCACCTCACTGCTCCTGCAGACACAAGGGCCACCGG
52% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000081349.9
CDS-3UTR GCA 90 bp CCGGTGGCCCTTGTGTCTGCAGGAGCAGTGAGGTGCTGTCTTTCATATTGTAACTTCTTCGGAATCCCCTaGTCTGTCTTTGGGCTCTTG +
Preference number: 4 (lower is better)
Translates to: PVALVSAGAVRCCLSYCNFFGIP*SVFGLL
Trigger: CAAGAGCCCAAAGACAGAGCAGGGGATTCCGAAGAA...GTTACAATATGAAAGACAGCACCTCACTGCTCCTGCAGACACAAGGGCCACCGG
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000081349.9
CDS-3UTR GCA 90 bp GCATTGTTCTTGTGGATTGACAAGAGACTTCCCAAAGAAGGCACAGGGGACTTTAGTGATGGTCTCCCCTaGCTCTGCGGTAGCCCCCTT +
Preference number: 4 (lower is better)
Translates to: ALFLWIDKRLPKEGTGDFSDGLP*LCGSPL
Trigger: AAGGGGGCTACCGCAGAGGCAGGGGAGACCATCACT...AAAGTCCCCTGTGCCTTCTTTGGGAAGTCTCTTGTCAATCCACAAGAACAATGC
52% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 1 transcripts:
ENSMUST00000081349.9
CDS-3UTR GCA 90 bp CAGGAACTCCCCGGTGGCCCTTGTGTCTGCAGGAGCAGTGAGGTGCTGTCTTTCCGCTTTCCTAACTGTTaGTTGAGATTTTCAATGGCT +
Preference number: 4 (lower is better)
Translates to: QELPGGPCVCRSSEVLSFRFPNC*LRFSMA
Trigger: AGCCATTGAAAATCTCAAGCAACAGTTAGGAAAGCG...GAAAGACAGCACCTCACTGCTCCTGCAGACACAAGGGCCACCGGGGAGTTCCTG
52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000081349.9
ENSMUST00000099576.9
ENSMUST00000102547.10
ENSMUST00000161731.5
CDS-3UTR GCA 90 bp AACTCCCCGGTGGCCCTTGTGTCTGCAGGAGCAGTGAGGTGCTGTCTTTCATATCTGGCTGCTTCTGGTTaGTTTGCTTTCAGCATCACA +
Preference number: 4 (lower is better)
Translates to: NSPVALVSAGAVRCCLSYLAASG*FAFSIT
Trigger: TGTGATGCTGAAAGCAAAGCAACCAGAAGCAGCCAG...ATATGAAAGACAGCACCTCACTGCTCCTGCAGACACAAGGGCCACCGGGGAGTT
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000081349.9
ENSMUST00000099576.9
ENSMUST00000102547.10
ENSMUST00000161731.5
CDS-3UTR GCA 90 bp GACTTCCCAAAGAAGGCACAGGGGACTTTCTGCAGATGGCCTCAGAAGGAGATGATTACTGACAGCTCCTaGAACTTTCCCTCCTGGCTC +
Preference number: 4 (lower is better)
Translates to: DFPKKAQGTFCRWPQKEMITDSS*NFPSWL
Trigger: GAGCCAGGAGGGAAAGTTGCAGGAGCTGTCAGTAAT...CATCTCCTTCTGAGGCCATCTGCAGAAAGTCCCCTGTGCCTTCTTTGGGAAGTC
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000099576.9
ENSMUST00000102547.10
CDS-3UTR GCA 90 bp CTTGTGTCTGCAGGAGCAGTGAGGTGCTGTCTTTCATATTGTAACTTCCTTCTGCTACCTCAGTGGGGCTaGTGTCAGGGGACAGAGGTC +
Preference number: 4 (lower is better)
Translates to: LVSAGAVRCCLSYCNFLLLPQWG*CQGTEV
Trigger: GACCTCTGTCCCCTGACAGCAGCCCCACTGAGGTAG...CAGAAGGAAGTTACAATATGAAAGACAGCACCTCACTGCTCCTGCAGACACAAG
52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000099576.9
ENSMUST00000102547.10
ENSMUST00000161731.5
CDS-3UTR GCA 90 bp GCCCTTGTGTCTGCAGGAGCAGTGAGGTGCTGTCTTTCATATTGTAACTTCCTTGCTGCTCCACCTCTCTaGCCCTGCATGTTTCCCATG +
Preference number: 4 (lower is better)
Translates to: ALVSAGAVRCCLSYCNFLAAPPL*PCMFPM
Trigger: CATGGGAAACATGCAGGGGCAGAGAGGTGGAGCAGC...AAGGAAGTTACAATATGAAAGACAGCACCTCACTGCTCCTGCAGACACAAGGGC
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000099576.9
ENSMUST00000102547.10
ENSMUST00000161731.5
CDS-3UTR GCA 90 bp GTGGCCCTTGTGTCTGCAGGAGCAGTGAGGTGCTGTCTTTCATATTGTAACTTCTCAGGACCTACCGTGTaGGGCAGATCCAGAAGCAAG +
Preference number: 4 (lower is better)
Translates to: VALVSAGAVRCCLSYCNFSGPTV*GRSRSK
Trigger: CTTGCTTCTGGATCTGCCGCACACGGTAGGTCCTGA...GAAGTTACAATATGAAAGACAGCACCTCACTGCTCCTGCAGACACAAGGGCCAC
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000099576.9
ENSMUST00000102547.10
ENSMUST00000161731.5
CDS-3UTR GCA 90 bp CTCCCCGGTGGCCCTTGTGTCTGCAGGAGCAGTGAGGTGCTGTCTTTCATATTGAGGTCTTTTGCCGTCTaGTCTTTGAAGTTGTCACAG +
Preference number: 4 (lower is better)
Translates to: LPGGPCVCRSSEVLSFILRSFAV*SLKLSQ
Trigger: CTGTGACAACTTCAAAGAGCAGACGGCAAAAGACCT...CAATATGAAAGACAGCACCTCACTGCTCCTGCAGACACAAGGGCCACCGGGGAG
52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000099576.9
ENSMUST00000102547.10
CDS-3UTR CCA 90 bp CTTGTGTCTGCAGGAGCAGTGAGGTGCTGTCTTTCATATTGTAACTTCCTTCTGGGTGGCCAGACAGCTTaGAGTCTGCCTGGAGTCCTG +
Preference number: 4 (lower is better)
Translates to: LVSAGAVRCCLSYCNFLLGGQTA*SLPGVL
Trigger: CAGGACTCCAGGCAGACTCCAAGCTGTCTGGCCACC...CAGAAGGAAGTTACAATATGAAAGACAGCACCTCACTGCTCCTGCAGACACAAG
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000081349.9
ENSMUST00000099576.9
ENSMUST00000102547.10
CDS-3UTR CCA 90 bp AGACTTCCCAAAGAAGGCACAGGGGACTTTCTGCAGATGGCCTCAGAAGGAGATCTTTGTCTTTGGGGGTaGCCAGACAGCTTGGAGTCT +
Preference number: 4 (lower is better)
Translates to: RLPKEGTGDFLQMASEGDLCLWG*PDSLES
Trigger: AGACTCCAAGCTGTCTGGCCACCCCCAAAGACAAAG...ATCTCCTTCTGAGGCCATCTGCAGAAAGTCCCCTGTGCCTTCTTTGGGAAGTCT
52% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000081349.9
ENSMUST00000099576.9
ENSMUST00000102547.10
CDS-3UTR CCA 90 bp CTCCCCGGTGGCCCTTGTGTCTGCAGGAGCAGTGAGGTGCTGTCTTTCATATTGCTATCTGGCTGCTTCTaGTTGCTTTGCTTTCAGCAT +
Preference number: 4 (lower is better)
Translates to: LPGGPCVCRSSEVLSFILLSGCF*LLCFQH
Trigger: ATGCTGAAAGCAAAGCAACCAGAAGCAGCCAGATAG...CAATATGAAAGACAGCACCTCACTGCTCCTGCAGACACAAGGGCCACCGGGGAG
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000081349.9
ENSMUST00000099576.9
ENSMUST00000102547.10
ENSMUST00000161731.5
CDS-3UTR CCA 90 bp CTCCCCGGTGGCCCTTGTGTCTGCAGGAGCAGTGAGGTGCTGTCTTTCATATTGTTCTTGGGTACTATCTaGCTGCTTCTGGTTGCTTTG +
Preference number: 4 (lower is better)
Translates to: LPGGPCVCRSSEVLSFILFLGTI*LLLVAL
Trigger: CAAAGCAACCAGAAGCAGCCAGATAGTACCCAAGAA...CAATATGAAAGACAGCACCTCACTGCTCCTGCAGACACAAGGGCCACCGGGGAG
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000081349.9
ENSMUST00000099576.9
ENSMUST00000102547.10
ENSMUST00000161731.5
CDS-3UTR CCA 90 bp TCCCCGGTGGCCCTTGTGTCTGCAGGAGCAGTGAGGTGCTGTCTTTCATATTGTGTCTGGAATGGGGCGTaGATGTCTTTGCTGTCTTTT +
Preference number: 4 (lower is better)
Translates to: SPVALVSAGAVRCCLSYCVWNGA*MSLLSF
Trigger: AAAAGACAGCAAAGACATCCACGCCCCATTCCAGAC...ACAATATGAAAGACAGCACCTCACTGCTCCTGCAGACACAAGGGCCACCGGGGA
52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000081349.9
ENSMUST00000099576.9
ENSMUST00000102547.10
ENSMUST00000161731.5
CDS-3UTR CCA 90 bp ATGGCCTCAGAAGGAGATGAGCAAATGTCCCTAACTAGTCTTTCAGGAACTCCCCACAGGACACACAGGTaGTATGGGTGGTGCTGGAGG +
Preference number: 4 (lower is better)
Translates to: MASEGDEQMSLTSLSGTPHRTHR*YGWCWR
Trigger: CCTCCAGCACCACCCATACCACCTGTGTGTCCTGTG...GGGAGTTCCTGAAAGACTAGTTAGGGACATTTGCTCATCTCCTTCTGAGGCCAT
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000081349.9
ENSMUST00000099576.9
ENSMUST00000102547.10
ENSMUST00000161731.5
CDS-3UTR CCA 90 bp ATGGCCTCAGAAGGAGATGAGCAAATGTCCCTAACTAGTCTTTCAGGAACTCCCAGGTGGTGGTGGTGGTaGTCCATCACTTGGAGGCAC +
Preference number: 4 (lower is better)
Translates to: MASEGDEQMSLTSLSGTPRWWWW*SITWRH
Trigger: GTGCCTCCAAGTGATGGACCACCACCACCACCACCT...GGGAGTTCCTGAAAGACTAGTTAGGGACATTTGCTCATCTCCTTCTGAGGCCAT
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000081349.9
ENSMUST00000099576.9
ENSMUST00000102547.10
ENSMUST00000161731.5
CDS-3UTR CCA 90 bp ATGGCCTCAGAAGGAGATGAGCAAATGTCCCTAACTAGTCTTTCAGGAACTCCCTGGAGGAGGTGGTGGTaGTGGTGGTCCATCACTTGG +
Preference number: 4 (lower is better)
Translates to: MASEGDEQMSLTSLSGTPWRRWW*WWSITW
Trigger: CCAAGTGATGGACCACCACCACCACCACCTCCTCCA...GGGAGTTCCTGAAAGACTAGTTAGGGACATTTGCTCATCTCCTTCTGAGGCCAT
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000081349.9
ENSMUST00000099576.9
ENSMUST00000102547.10
ENSMUST00000161731.5
CDS-3UTR CCA 90 bp CAGGAACTCCCCGGTGGCCCTTGTGTCTGCAGGAGCAGTGAGGTGCTGTCTTTCGTTGGTGCGGCGTCTTaGCTTTTATCATTTATTTGT +
Preference number: 4 (lower is better)
Translates to: QELPGGPCVCRSSEVLSFVGAAS*LLSFIC
Trigger: ACAAATAAATGATAAAAGCCAAGACGCCGCACCAAC...GAAAGACAGCACCTCACTGCTCCTGCAGACACAAGGGCCACCGGGGAGTTCCTG
52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000081349.9
ENSMUST00000099576.9
ENSMUST00000102547.10
ENSMUST00000161731.5
CDS-3UTR CCA 90 bp CTCCCCGGTGGCCCTTGTGTCTGCAGGAGCAGTGAGGTGCTGTCTTTCATATTGCACGTTCGGCAAAATTaGGAATCTGGGCTAACTCAT +
Preference number: 4 (lower is better)
Translates to: LPGGPCVCRSSEVLSFILHVRQN*ESGLTH
Trigger: ATGAGTTAGCCCAGATTCCCAATTTTGCCGAACGTG...CAATATGAAAGACAGCACCTCACTGCTCCTGCAGACACAAGGGCCACCGGGGAG
52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000081349.9
ENSMUST00000099576.9
ENSMUST00000102547.10
ENSMUST00000161731.5
CDS-3UTR CCA 90 bp TTCCCAAAGAAGGCACAGGGGACTTTCTGCAGATGGCCTCAGAAGGAGATGAGCCAGGAAGAAATCCTGTaGTTCAGGCAGCGGGAAAAC +
Preference number: 4 (lower is better)
Translates to: FPKKAQGTFCRWPQKEMSQEEIL*FRQREN
Trigger: GTTTTCCCGCTGCCTGAACCACAGGATTTCTTCCTG...GCTCATCTCCTTCTGAGGCCATCTGCAGAAAGTCCCCTGTGCCTTCTTTGGGAA
52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000081349.9
ENSMUST00000099576.9
ENSMUST00000102547.10
CDS-3UTR CCA 90 bp ATGGCCTCAGAAGGAGATGAGCAAATGTCCCTAACTAGTCTTTCAGGAACTCCCCTGCAGGTACTCCCTTaGGGACTCCTTGCACACCAG +
Preference number: 4 (lower is better)
Translates to: MASEGDEQMSLTSLSGTPLQVLP*GLLAHQ
Trigger: CTGGTGTGCAAGGAGTCCCCAAGGGAGTACCTGCAG...GGGAGTTCCTGAAAGACTAGTTAGGGACATTTGCTCATCTCCTTCTGAGGCCAT
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000081349.9
ENSMUST00000099576.9
ENSMUST00000102547.10
ENSMUST00000161731.5
CDS-3UTR CCA 90 bp GCCCTTGTGTCTGCAGGAGCAGTGAGGTGCTGTCTTTCATATTGTAACTTCCTTGCCTGGATGTTCGTTTaGCTGCTGGCTGAGGCTGGT +
Preference number: 4 (lower is better)
Translates to: ALVSAGAVRCCLSYCNFLAWMFV*LLAEAG
Trigger: ACCAGCCTCAGCCAGCAGCCAAACGAACATCCAGGC...AAGGAAGTTACAATATGAAAGACAGCACCTCACTGCTCCTGCAGACACAAGGGC
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000099576.9
ENSMUST00000102547.10
ENSMUST00000161731.5
CDS-3UTR CCA 90 bp CTCCCCGGTGGCCCTTGTGTCTGCAGGAGCAGTGAGGTGCTGTCTTTCATATTGGAAAAATATGTCGCCTaGATGTTCGTTTGGCTGCTG +
Preference number: 4 (lower is better)
Translates to: LPGGPCVCRSSEVLSFILEKYVA*MFVWLL
Trigger: CAGCAGCCAAACGAACATCCAGGCGACATATTTTTC...CAATATGAAAGACAGCACCTCACTGCTCCTGCAGACACAAGGGCCACCGGGGAG
52% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000099576.9
ENSMUST00000102547.10
ENSMUST00000161731.5
CDS-3UTR CCA 90 bp GTGGCCCTTGTGTCTGCAGGAGCAGTGAGGTGCTGTCTTTCATATTGTAACTTCCTCAGTTTGGGTCTCTaGGCCATAGGCAACCCTTCC +
Preference number: 4 (lower is better)
Translates to: VALVSAGAVRCCLSYCNFLSLGL*AIGNPS
Trigger: GGAAGGGTTGCCTATGGCCCAGAGACCCAAACTGAG...GAAGTTACAATATGAAAGACAGCACCTCACTGCTCCTGCAGACACAAGGGCCAC
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000099576.9
ENSMUST00000102547.10
ENSMUST00000161731.5
CDS-3UTR CCA 90 bp ATGGCCTCAGAAGGAGATGAGCAAATGTCCCTAACTAGTCTTTCAGGAACTCCCGGTGGCAACTGGTGCTaGGGTGGAGCTGTGATCTTC +
Preference number: 4 (lower is better)
Translates to: MASEGDEQMSLTSLSGTPGGNWC*GGAVIF
Trigger: GAAGATCACAGCTCCACCCCAGCACCAGTTGCCACC...GGGAGTTCCTGAAAGACTAGTTAGGGACATTTGCTCATCTCCTTCTGAGGCCAT
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000099576.9
ENSMUST00000102547.10
ENSMUST00000161731.5
CDS-3UTR CCA 90 bp GCCCTTGTGTCTGCAGGAGCAGTGAGGTGCTGTCTTTCATATTGTAACTTCCTTAGCCTGGTATTCTGGTaGCAACTGGTGCTGGGGTGG +
Preference number: 4 (lower is better)
Translates to: ALVSAGAVRCCLSYCNFLSLVFW*QLVLGW
Trigger: CCACCCCAGCACCAGTTGCCACCAGAATACCAGGCT...AAGGAAGTTACAATATGAAAGACAGCACCTCACTGCTCCTGCAGACACAAGGGC
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000161731.5
CDS-3UTR TCA 90 bp CCGGTGGCCCTTGTGTCTGCAGGAGCAGTGAGGTGCTGTCTTTCATATTGTAACTTGGCATGTCAATGTTaGGCAGCTGTGATAGCTGCT +
Preference number: 4 (lower is better)
Translates to: PVALVSAGAVRCCLSYCNLACQC*AAVIAA
Trigger: AGCAGCTATCACAGCTGCTCAACATTGACATGCCAA...GTTACAATATGAAAGACAGCACCTCACTGCTCCTGCAGACACAAGGGCCACCGG
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000081349.9
CDS-3UTR TCA 90 bp TTCCCAAAGAAGGCACAGGGGACTTTCTGCAGATGGCCTCAGAAGGAGATGAGCTGCTCACCCCGGATGTaGAATGTCTTGAGTTCAAAC +
Preference number: 4 (lower is better)
Translates to: FPKKAQGTFCRWPQKEMSCSPRM*NVLSSN
Trigger: GTTTGAACTCAAGACATTTCACATCCGGGGTGAGCA...GCTCATCTCCTTCTGAGGCCATCTGCAGAAAGTCCCCTGTGCCTTCTTTGGGAA
51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000081349.9
ENSMUST00000099576.9
ENSMUST00000102547.10
CDS-3UTR TCA 90 bp CAGGAACTCCCCGGTGGCCCTTGTGTCTGCAGGAGCAGTGAGGTGCTGTCTTTCTTCCTAACTGTTGCTTaGGATTTTCAATGGCTTCTT +
Preference number: 4 (lower is better)
Translates to: QELPGGPCVCRSSEVLSFFLTVA*DFQWLL
Trigger: AAGAAGCCATTGAAAATCTCAAGCAACAGTTAGGAA...GAAAGACAGCACCTCACTGCTCCTGCAGACACAAGGGCCACCGGGGAGTTCCTG
51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000081349.9
ENSMUST00000099576.9
ENSMUST00000102547.10
ENSMUST00000161731.5
CDS-3UTR TCA 90 bp TCTTTCAGGAACTCCCCGGTGGCCCTTGTGTCTGCAGGAGCAGTGAGGTGCTGTTTCCAAAAGCCAGAATaGGAGCTAAGATATCCTTCA +
Preference number: 4 (lower is better)
Translates to: SFRNSPVALVSAGAVRCCFQKPE*ELRYPS
Trigger: TGAAGGATATCTTAGCTCTCATTCTGGCTTTTGGAA...ACAGCACCTCACTGCTCCTGCAGACACAAGGGCCACCGGGGAGTTCCTGAAAGA
51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000081349.9
ENSMUST00000099576.9
ENSMUST00000102547.10
ENSMUST00000161731.5
CDS-3UTR TCA 90 bp GCCCTTGTGTCTGCAGGAGCAGTGAGGTGCTGTCTTTCATATTGTAACTTCCTTCCTCCAGTTTGTCCTTaGAAGGCTGCAGGTACTCCC +
Preference number: 4 (lower is better)
Translates to: ALVSAGAVRCCLSYCNFLPPVCP*KAAGTP
Trigger: GGGAGTACCTGCAGCCTTTCAAGGACAAACTGGAGG...AAGGAAGTTACAATATGAAAGACAGCACCTCACTGCTCCTGCAGACACAAGGGC
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000081349.9
ENSMUST00000099576.9
ENSMUST00000102547.10
ENSMUST00000161731.5
CDS-3UTR TCA 90 bp TTCCCAAAGAAGGCACAGGGGACTTTCTGCAGATGGCCTCAGAAGGAGATGAGCCTCCACTTTCTTCTCTaGTGTCAGTTTGCTGACGGA +
Preference number: 4 (lower is better)
Translates to: FPKKAQGTFCRWPQKEMSLHFLL*CQFADG
Trigger: TCCGTCAGCAAACTGACATCAGAGAAGAAAGTGGAG...GCTCATCTCCTTCTGAGGCCATCTGCAGAAAGTCCCCTGTGCCTTCTTTGGGAA
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000081349.9
ENSMUST00000099576.9
ENSMUST00000102547.10
CDS-3UTR TCA 90 bp CCGGTGGCCCTTGTGTCTGCAGGAGCAGTGAGGTGCTGTCTTTCATATTGTAACTACAGTGCCCTTGTATaGAAATCCTCTGACTTCCCC +
Preference number: 4 (lower is better)
Translates to: PVALVSAGAVRCCLSYCNYSALV*KSSDFP
Trigger: GGGGAAGTCAGAGGATTTTCATACAAGGGCACTGTA...GTTACAATATGAAAGACAGCACCTCACTGCTCCTGCAGACACAAGGGCCACCGG
51% GC, longest homopolymer 4 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000099576.9
ENSMUST00000102547.10
ENSMUST00000161731.5
CDS-3UTR TCA 90 bp ATGGCCTCAGAAGGAGATGAGCAAATGTCCCTAACTAGTCTTTCAGGAACTCCCACCGAGGATGTTGTCTaGCCTCAGCAGACTGTCCAG +
Preference number: 4 (lower is better)
Translates to: MASEGDEQMSLTSLSGTPTEDVV*PQQTVQ
Trigger: CTGGACAGTCTGCTGAGGTCAGACAACATCCTCGGT...GGGAGTTCCTGAAAGACTAGTTAGGGACATTTGCTCATCTCCTTCTGAGGCCAT
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000099576.9
ENSMUST00000102547.10
ENSMUST00000161731.5
CDS-3UTR GCA 90 bp GACTTCCCAAAGAAGGCACAGGGGACTTTCTGCAGATGGCCTCAGAAGGAGATGGCTACTTTCTTCTTCTaGCTCCTGGTCTCCATCTTC +
Preference number: 4 (lower is better)
Translates to: DFPKKAQGTFCRWPQKEMATFFF*LLVSIF
Trigger: GAAGATGGAGACCAGGAGGCAGAAGAAGAAAGTAGC...CATCTCCTTCTGAGGCCATCTGCAGAAAGTCCCCTGTGCCTTCTTTGGGAAGTC
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000081349.9
CDS-3UTR GCA 90 bp ATGGCCTCAGAAGGAGATGAGCAAATGTCCCTAACTAGTCTTTCAGGAACTCCCAGTCTGGTCTGTTGCTaGGGGTGGGATTTGAGACCC +
Preference number: 4 (lower is better)
Translates to: MASEGDEQMSLTSLSGTPSLVCC*GWDLRP
Trigger: GGGTCTCAAATCCCACCCGCAGCAACAGACCAGACT...GGGAGTTCCTGAAAGACTAGTTAGGGACATTTGCTCATCTCCTTCTGAGGCCAT
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000081349.9
CDS-3UTR GCA 90 bp TCTTTCAGGAACTCCCCGGTGGCCCTTGTGTCTGCAGGAGCAGTGAGGTGCTGTCATCATCTGTGGAAATaGACACATCTCTCATCTCTT +
Preference number: 4 (lower is better)
Translates to: SFRNSPVALVSAGAVRCCHHLWK*THLSSL
Trigger: AAGAGATGAGAGATGTGTGCATTTCCACAGATGATG...ACAGCACCTCACTGCTCCTGCAGACACAAGGGCCACCGGGGAGTTCCTGAAAGA
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000081349.9
ENSMUST00000099576.9
ENSMUST00000102547.10
ENSMUST00000161731.5
CDS-3UTR GCA 90 bp CCGGTGGCCCTTGTGTCTGCAGGAGCAGTGAGGTGCTGTCTTTCATATTGTAACCTGGCTGCTTCTGGTTaGTTTGCTTTCAGCATCACA +
Preference number: 4 (lower is better)
Translates to: PVALVSAGAVRCCLSYCNLAASG*FAFSIT
Trigger: TGTGATGCTGAAAGCAAAGCAACCAGAAGCAGCCAG...GTTACAATATGAAAGACAGCACCTCACTGCTCCTGCAGACACAAGGGCCACCGG
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000081349.9
ENSMUST00000099576.9
ENSMUST00000102547.10
ENSMUST00000161731.5
CDS-3UTR GCA 90 bp AACTCCCCGGTGGCCCTTGTGTCTGCAGGAGCAGTGAGGTGCTGTCTTTCATATTGGGTACTATCTGGCTaGTTCTGGTTGCTTTGCTTT +
Preference number: 4 (lower is better)
Translates to: NSPVALVSAGAVRCCLSYWVLSG*FWLLCF
Trigger: AAAGCAAAGCAACCAGAAGCAGCCAGATAGTACCCA...ATATGAAAGACAGCACCTCACTGCTCCTGCAGACACAAGGGCCACCGGGGAGTT
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000081349.9
ENSMUST00000099576.9
ENSMUST00000102547.10
ENSMUST00000161731.5
CDS-3UTR GCA 90 bp ATCTCAATAGCTGATGCTCACTTCCAGCATCAAAACTTCTTCTCCAGATTAAGGAGGAGGAGGTGGGGGTaGAAGTCCTGGCGGAGGAGG +
Preference number: 4 (lower is better)
Translates to: ISIADAHFQHQNFFSRLRRRRWG*KSWRRR
Trigger: CCTCCTCCGCCAGGACTTGCACCCCCACCTCCTCCT...CCTTAATCTGGAGAAGAAGTTTTGATGCTGGAAGTGAGCATCAGCTATTGAGAT
51% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000099576.9
CDS-3UTR GCA 90 bp AACTCCCCGGTGGCCCTTGTGTCTGCAGGAGCAGTGAGGTGCTGTCTTTCATATCAGTTTGCTGACGGATaGCTGAGCCATTTTCAATCT +
Preference number: 4 (lower is better)
Translates to: NSPVALVSAGAVRCCLSYQFADG*LSHFQS
Trigger: AGATTGAAAATGGCTCAGGCATCCGTCAGCAAACTG...ATATGAAAGACAGCACCTCACTGCTCCTGCAGACACAAGGGCCACCGGGGAGTT
51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000081349.9
ENSMUST00000099576.9
ENSMUST00000102547.10
ENSMUST00000161731.5
CDS-3UTR GCA 90 bp GCCCTTGTGTCTGCAGGAGCAGTGAGGTGCTGTCTTTCATATTGTAACTTCCTTGGATGTTCGTTTGGCTaGTGGCTGAGGCTGGTGATG +
Preference number: 4 (lower is better)
Translates to: ALVSAGAVRCCLSYCNFLGCSFG*WLRLVM
Trigger: CATCACCAGCCTCAGCCAGCAGCCAAACGAACATCC...AAGGAAGTTACAATATGAAAGACAGCACCTCACTGCTCCTGCAGACACAAGGGC
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000099576.9
ENSMUST00000102547.10
ENSMUST00000161731.5
CDS-3UTR GCA 90 bp AGACTTCCCAAAGAAGGCACAGGGGACTTTCTGCAGATGGCCTCAGAAGGAGATGTTCTCTGCGCCAGTTaGCAGCACTCTGGAAATACT +
Preference number: 4 (lower is better)
Translates to: RLPKEGTGDFLQMASEGDVLCAS*QHSGNT
Trigger: AGTATTTCCAGAGTGCTGGCAACTGGCGCAGAGAAC...ATCTCCTTCTGAGGCCATCTGCAGAAAGTCCCCTGTGCCTTCTTTGGGAAGTCT
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000099576.9
ENSMUST00000102547.10
CDS-3UTR GCA 90 bp CTTGTGTCTGCAGGAGCAGTGAGGTGCTGTCTTTCATATTGTAACTTCCTTCTGGCTGCTCCACCTCTCTaGCCCTGCATGTTTCCCATG +
Preference number: 4 (lower is better)
Translates to: LVSAGAVRCCLSYCNFLLAAPPL*PCMFPM
Trigger: CATGGGAAACATGCAGGGGCAGAGAGGTGGAGCAGC...CAGAAGGAAGTTACAATATGAAAGACAGCACCTCACTGCTCCTGCAGACACAAG
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000099576.9
ENSMUST00000102547.10
ENSMUST00000161731.5
CDS-3UTR GCA 90 bp GCATTGTTCTTGTGGATTGACAAGAGACTTCCCAAAGAAGGCACAGGGGACTTTTTGACTTCCGAGTCCTaGTGCTCCACCTCTCTGCCC +
Preference number: 4 (lower is better)
Translates to: ALFLWIDKRLPKEGTGDFLTSES*CSTSLP
Trigger: GGGCAGAGAGGTGGAGCAGCAGGACTCGGAAGTCAA...AAAGTCCCCTGTGCCTTCTTTGGGAAGTCTCTTGTCAATCCACAAGAACAATGC
51% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000099576.9
ENSMUST00000102547.10
CDS-3UTR GCA 90 bp GCCCTTGTGTCTGCAGGAGCAGTGAGGTGCTGTCTTTCATATTGTAACTTCCTTTCAGGACCTACCGTGTaGGGCAGATCCAGAAGCAAG +
Preference number: 4 (lower is better)
Translates to: ALVSAGAVRCCLSYCNFLSGPTV*GRSRSK
Trigger: CTTGCTTCTGGATCTGCCGCACACGGTAGGTCCTGA...AAGGAAGTTACAATATGAAAGACAGCACCTCACTGCTCCTGCAGACACAAGGGC
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000099576.9
ENSMUST00000102547.10
ENSMUST00000161731.5
CDS-3UTR CCA 90 bp GCCCTTGTGTCTGCAGGAGCAGTGAGGTGCTGTCTTTCATATTGTAACTTCCTTGATCTGAGCCTTTGCTaGGATCACCTCGCTCAGGAG +
Preference number: 4 (lower is better)
Translates to: ALVSAGAVRCCLSYCNFLDLSLC*DHLAQE
Trigger: CTCCTGAGCGAGGTGATCCCAGCAAAGGCTCAGATC...AAGGAAGTTACAATATGAAAGACAGCACCTCACTGCTCCTGCAGACACAAGGGC
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000081349.9
CDS-3UTR CCA 90 bp CCGGTGGCCCTTGTGTCTGCAGGAGCAGTGAGGTGCTGTCTTTCATATTGTAACTCTTCTTCTGCCTCCTaGTCTCCATCTTCAGAGTCA +
Preference number: 4 (lower is better)
Translates to: PVALVSAGAVRCCLSYCNSSSAS*SPSSES
Trigger: TGACTCTGAAGATGGAGACCAGGAGGCAGAAGAAGA...GTTACAATATGAAAGACAGCACCTCACTGCTCCTGCAGACACAAGGGCCACCGG
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000081349.9
CDS-3UTR CCA 90 bp CTCTTGGGGATCACCATGTACCTCTTTTCTCATGACAAGGGTATATACTGGAAGAGGGCACCTACAGTCTaGTCTGTTGCTGCGGGTGGG +
Preference number: 4 (lower is better)
Translates to: LLGITMYLFSHDKGIYWKRAPTV*SVAAGG
Trigger: CCCACCCGCAGCAACAGACCAGACTGTAGGTGCCCT...CTTCCAGTATATACCCTTGTCATGAGAAAAGAGGTACATGGTGATCCCCAAGAG
51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000081349.9
CDS-3UTR CCA 90 bp CTCTTGGGGATCACCATGTACCTCTTTTCTCATGACAAGGGTATATACTGGAAGGGTGGCCAGACAGCTTaGAGTCTGCCTGGAGTCCTG +
Preference number: 4 (lower is better)
Translates to: LLGITMYLFSHDKGIYWKGGQTA*SLPGVL
Trigger: CAGGACTCCAGGCAGACTCCAAGCTGTCTGGCCACC...CTTCCAGTATATACCCTTGTCATGAGAAAAGAGGTACATGGTGATCCCCAAGAG
51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000081349.9
ENSMUST00000099576.9
ENSMUST00000102547.10
CDS-3UTR CCA 90 bp TCCCCGGTGGCCCTTGTGTCTGCAGGAGCAGTGAGGTGCTGTCTTTCATATTGTTGTAGGATAGCAGCCTaGTATTCTGCTTCAGTGTAC +
Preference number: 4 (lower is better)
Translates to: SPVALVSAGAVRCCLSYCCRIAA*YSASVY
Trigger: GTACACTGAAGCAGAATACCAGGCTGCTATCCTACA...ACAATATGAAAGACAGCACCTCACTGCTCCTGCAGACACAAGGGCCACCGGGGA
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000081349.9
ENSMUST00000099576.9
ENSMUST00000102547.10
CDS-3UTR CCA 90 bp TCCCCGGTGGCCCTTGTGTCTGCAGGAGCAGTGAGGTGCTGTCTTTCATATTGTCTATCTGGCTGCTTCTaGTTGCTTTGCTTTCAGCAT +
Preference number: 4 (lower is better)
Translates to: SPVALVSAGAVRCCLSYCLSGCF*LLCFQH
Trigger: ATGCTGAAAGCAAAGCAACCAGAAGCAGCCAGATAG...ACAATATGAAAGACAGCACCTCACTGCTCCTGCAGACACAAGGGCCACCGGGGA
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000081349.9
ENSMUST00000099576.9
ENSMUST00000102547.10
ENSMUST00000161731.5
CDS-3UTR CCA 90 bp TTCCCAAAGAAGGCACAGGGGACTTTCTGCAGATGGCCTCAGAAGGAGATGAGCTTTGAGGGAGAGAGCTaGGTTAAGGAGATAGTCAGC +
Preference number: 4 (lower is better)
Translates to: FPKKAQGTFCRWPQKEMSFEGES*VKEIVS
Trigger: GCTGACTATCTCCTTAACCCAGCTCTCTCCCTCAAA...GCTCATCTCCTTCTGAGGCCATCTGCAGAAAGTCCCCTGTGCCTTCTTTGGGAA
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000081349.9
ENSMUST00000099576.9
ENSMUST00000102547.10
CDS-3UTR CCA 90 bp CCGGTGGCCCTTGTGTCTGCAGGAGCAGTGAGGTGCTGTCTTTCATATTGTAACGTCTGGAATGGGGCGTaGATGTCTTTGCTGTCTTTT +
Preference number: 4 (lower is better)
Translates to: PVALVSAGAVRCCLSYCNVWNGA*MSLLSF
Trigger: AAAAGACAGCAAAGACATCCACGCCCCATTCCAGAC...GTTACAATATGAAAGACAGCACCTCACTGCTCCTGCAGACACAAGGGCCACCGG
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000081349.9
ENSMUST00000099576.9
ENSMUST00000102547.10
ENSMUST00000161731.5
CDS-3UTR CCA 90 bp CTTGTGTCTGCAGGAGCAGTGAGGTGCTGTCTTTCATATTGTAACTTCCTTCTGAGGAGGTGGTGGTGGTaGTGGTCCATCACTTGGAGG +
Preference number: 4 (lower is better)
Translates to: LVSAGAVRCCLSYCNFLLRRWWW*WSITWR
Trigger: CCTCCAAGTGATGGACCACCACCACCACCACCTCCT...CAGAAGGAAGTTACAATATGAAAGACAGCACCTCACTGCTCCTGCAGACACAAG
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000081349.9
ENSMUST00000099576.9
ENSMUST00000102547.10
ENSMUST00000161731.5
CDS-3UTR CCA 90 bp CAGGAACTCCCCGGTGGCCCTTGTGTCTGCAGGAGCAGTGAGGTGCTGTCTTTCGCAAAATTGGGAATCTaGGCTAACTCATGCAAAAAT +
Preference number: 4 (lower is better)
Translates to: QELPGGPCVCRSSEVLSFAKLGI*ANSCKN
Trigger: ATTTTTGCATGAGTTAGCCCAGATTCCCAATTTTGC...GAAAGACAGCACCTCACTGCTCCTGCAGACACAAGGGCCACCGGGGAGTTCCTG
51% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 4 transcripts:
ENSMUST00000081349.9
ENSMUST00000099576.9
ENSMUST00000102547.10
ENSMUST00000161731.5
CDS-3UTR CCA 90 bp CTTGTGTCTGCAGGAGCAGTGAGGTGCTGTCTTTCATATTGTAACTTCCTTCTGCTGCAGGTACTCCCTTaGGGACTCCTTGCACACCAG +
Preference number: 4 (lower is better)
Translates to: LVSAGAVRCCLSYCNFLLLQVLP*GLLAHQ
Trigger: CTGGTGTGCAAGGAGTCCCCAAGGGAGTACCTGCAG...CAGAAGGAAGTTACAATATGAAAGACAGCACCTCACTGCTCCTGCAGACACAAG
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000081349.9
ENSMUST00000099576.9
ENSMUST00000102547.10
ENSMUST00000161731.5
CDS-3UTR CCA 90 bp TCTTTCAGGAACTCCCCGGTGGCCCTTGTGTCTGCAGGAGCAGTGAGGTGCTGTCTTCTCTCCAGTCTTTaGCTTCATTCCAAAATATCC +
Preference number: 4 (lower is better)
Translates to: SFRNSPVALVSAGAVRCCLLSSL*LHSKIS
Trigger: GGATATTTTGGAATGAAGCCAAAGACTGGAGAGAAG...ACAGCACCTCACTGCTCCTGCAGACACAAGGGCCACCGGGGAGTTCCTGAAAGA
51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000081349.9
ENSMUST00000099576.9
ENSMUST00000102547.10
ENSMUST00000161731.5
CDS-3UTR CCA 90 bp CAGGAACTCCCCGGTGGCCCTTGTGTCTGCAGGAGCAGTGAGGTGCTGTCTTTCTATGGAAAGCGTTATTaGATCTGTCTAGAGTTACAG +
Preference number: 4 (lower is better)
Translates to: QELPGGPCVCRSSEVLSFYGKRY*ICLELQ
Trigger: CTGTAACTCTAGACAGATCCAATAACGCTTTCCATA...GAAAGACAGCACCTCACTGCTCCTGCAGACACAAGGGCCACCGGGGAGTTCCTG
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000099576.9
ENSMUST00000102547.10
ENSMUST00000161731.5
CDS-3UTR CCA 90 bp TGCCCCAATCCCAACACACAACATTATGGTCTACTTCGTGTCAACCTGCAGGATCTCAGTTTCACCTCCTaGGAGGGTGAGGAAGTCAGC +
Preference number: 4 (lower is better)
Translates to: CPNPNTQHYGLLRVNLQDLSFTS*EGEEVS
Trigger: GCTGACTTCCTCACCCTCCCAGGAGGTGAAACTGAG...ATCCTGCAGGTTGACACGAAGTAGACCATAATGTTGTGTGTTGGGATTGGGGCA
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000099576.9
CDS-3UTR CCA 90 bp ATGGCCTCAGAAGGAGATGAGCAAATGTCCCTAACTAGTCTTTCAGGAACTCCCTCCCTCACTAGGCAGTaGTGGGAGCAGAAGGATCCT +
Preference number: 4 (lower is better)
Translates to: MASEGDEQMSLTSLSGTPSLTRQ*WEQKDP
Trigger: AGGATCCTTCTGCTCCCACCACTGCCTAGTGAGGGA...GGGAGTTCCTGAAAGACTAGTTAGGGACATTTGCTCATCTCCTTCTGAGGCCAT
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000099576.9
ENSMUST00000102547.10
ENSMUST00000161731.5
CDS-3UTR CCA 90 bp ATGGCCTCAGAAGGAGATGAGCAAATGTCCCTAACTAGTCTTTCAGGAACTCCCCAACTGGTGCTGGGGTaGAGCTGTGATCTTCTCTGG +
Preference number: 4 (lower is better)
Translates to: MASEGDEQMSLTSLSGTPQLVLG*SCDLLW
Trigger: CCAGAGAAGATCACAGCTCCACCCCAGCACCAGTTG...GGGAGTTCCTGAAAGACTAGTTAGGGACATTTGCTCATCTCCTTCTGAGGCCAT
51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000099576.9
ENSMUST00000102547.10
ENSMUST00000161731.5
CDS-3UTR TCA 90 bp GCCCTTGTGTCTGCAGGAGCAGTGAGGTGCTGTCTTTCATATTGTAACTTCCTTTTACTCAGGATCGACTaGGCCATCTCAAGTCCGGCT +
Preference number: 4 (lower is better)
Translates to: ALVSAGAVRCCLSYCNFLLLRID*AISSPA
Trigger: AGCCGGACTTGAGATGGCTCAGTCGATCCTGAGTAA...AAGGAAGTTACAATATGAAAGACAGCACCTCACTGCTCCTGCAGACACAAGGGC
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000081349.9
CDS-3UTR TCA 90 bp GGATCACCATGTACCTCTTTTCTCATGACAAGGGTATATACTGGAAGGCTTAGAGTTCTTGCCTTCACCTaGCCACCCTGGACGTGGGCA +
Preference number: 4 (lower is better)
Translates to: GSPCTSFLMTRVYTGRLRVLAFT*PPWTWA
Trigger: TGCCCACGTCCAGGGTGGTCAGGTGAAGGCAAGAAC...TCTAAGCCTTCCAGTATATACCCTTGTCATGAGAAAAGAGGTACATGGTGATCC
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000081349.9
CDS-3UTR TCA 90 bp CCGGTGGCCCTTGTGTCTGCAGGAGCAGTGAGGTGCTGTCTTTCATATTGTAACGGATGTGAAATGTCTTaGGTTCAAACTGAGCCTGCA +
Preference number: 4 (lower is better)
Translates to: PVALVSAGAVRCCLSYCNGCEMS*VQTEPA
Trigger: TGCAGGCTCAGTTTGAACTCAAGACATTTCACATCC...GTTACAATATGAAAGACAGCACCTCACTGCTCCTGCAGACACAAGGGCCACCGG
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000081349.9
ENSMUST00000099576.9
ENSMUST00000102547.10
ENSMUST00000161731.5
CDS-3UTR TCA 90 bp GACTTCCCAAAGAAGGCACAGGGGACTTTCTGCAGATGGCCTCAGAAGGAGATGGGATGTGAAATGTCTTaGGTTCAAACTGAGCCTGCA +
Preference number: 4 (lower is better)
Translates to: DFPKKAQGTFCRWPQKEMGCEMS*VQTEPA
Trigger: TGCAGGCTCAGTTTGAACTCAAGACATTTCACATCC...CATCTCCTTCTGAGGCCATCTGCAGAAAGTCCCCTGTGCCTTCTTTGGGAAGTC
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000081349.9
ENSMUST00000099576.9
ENSMUST00000102547.10
CDS-3UTR TCA 90 bp TTCCCAAAGAAGGCACAGGGGACTTTCTGCAGATGGCCTCAGAAGGAGATGAGCGGATGTGAAATGTCTTaGGTTCAAACTGAGCCTGCA +
Preference number: 4 (lower is better)
Translates to: FPKKAQGTFCRWPQKEMSGCEMS*VQTEPA
Trigger: TGCAGGCTCAGTTTGAACTCAAGACATTTCACATCC...GCTCATCTCCTTCTGAGGCCATCTGCAGAAAGTCCCCTGTGCCTTCTTTGGGAA
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000081349.9
ENSMUST00000099576.9
ENSMUST00000102547.10
CDS-3UTR TCA 90 bp GCATTGTTCTTGTGGATTGACAAGAGACTTCCCAAAGAAGGCACAGGGGACTTTGGCTGGAAGAAGAGCTaGGTCCAAAGGACAGTCCAG +
Preference number: 4 (lower is better)
Translates to: ALFLWIDKRLPKEGTGDFGWKKS*VQRTVQ
Trigger: CTGGACTGTCCTTTGGACTCAGCTCTTCTTCCAGCC...AAAGTCCCCTGTGCCTTCTTTGGGAAGTCTCTTGTCAATCCACAAGAACAATGC
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000081349.9
ENSMUST00000099576.9
ENSMUST00000102547.10
CDS-3UTR TCA 90 bp AACTCCCCGGTGGCCCTTGTGTCTGCAGGAGCAGTGAGGTGCTGTCTTTCATATAAGATTCCCACAGTTTaGGATCGCTTTCCATCCAAT +
Preference number: 4 (lower is better)
Translates to: NSPVALVSAGAVRCCLSYKIPTV*DRFPSN
Trigger: ATTGGATGGAAAGCGATCTCAAACTGTGGGAATCTT...ATATGAAAGACAGCACCTCACTGCTCCTGCAGACACAAGGGCCACCGGGGAGTT
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000081349.9
ENSMUST00000099576.9
ENSMUST00000102547.10
ENSMUST00000161731.5
CDS-3UTR TCA 90 bp CTCCCCGGTGGCCCTTGTGTCTGCAGGAGCAGTGAGGTGCTGTCTTTCATATTGTTCGATGTAAGGATGTaGTACCCTCAGAAAATACAG +
Preference number: 4 (lower is better)
Translates to: LPGGPCVCRSSEVLSFILFDVRM*YPQKIQ
Trigger: CTGTATTTTCTGAGGGTATCACATCCTTACATCGAA...CAATATGAAAGACAGCACCTCACTGCTCCTGCAGACACAAGGGCCACCGGGGAG
50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000081349.9
ENSMUST00000099576.9
ENSMUST00000102547.10
ENSMUST00000161731.5
CDS-3UTR TCA 90 bp GCATTGTTCTTGTGGATTGACAAGAGACTTCCCAAAGAAGGCACAGGGGACTTTCCTCCAGTTTGTCCTTaGAAGGCTGCAGGTACTCCC +
Preference number: 4 (lower is better)
Translates to: ALFLWIDKRLPKEGTGDFPPVCP*KAAGTP
Trigger: GGGAGTACCTGCAGCCTTTCAAGGACAAACTGGAGG...AAAGTCCCCTGTGCCTTCTTTGGGAAGTCTCTTGTCAATCCACAAGAACAATGC
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000081349.9
ENSMUST00000099576.9
ENSMUST00000102547.10
CDS-3UTR TCA 90 bp CTTGTGTCTGCAGGAGCAGTGAGGTGCTGTCTTTCATATTGTAACTTCCTTCTGCCTCCAGTTTGTCCTTaGAAGGCTGCAGGTACTCCC +
Preference number: 4 (lower is better)
Translates to: LVSAGAVRCCLSYCNFLLPPVCP*KAAGTP
Trigger: GGGAGTACCTGCAGCCTTTCAAGGACAAACTGGAGG...CAGAAGGAAGTTACAATATGAAAGACAGCACCTCACTGCTCCTGCAGACACAAG
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000081349.9
ENSMUST00000099576.9
ENSMUST00000102547.10
ENSMUST00000161731.5
CDS-3UTR TCA 90 bp CCGGTGGCCCTTGTGTCTGCAGGAGCAGTGAGGTGCTGTCTTTCATATTGTAACGCTTCCAAATGGTCTTaGAGTCACTGCAGAACTCAA +
Preference number: 4 (lower is better)
Translates to: PVALVSAGAVRCCLSYCNASKWS*SHCRTQ
Trigger: TTGAGTTCTGCAGTGACTTCAAGACCATTTGGAAGC...GTTACAATATGAAAGACAGCACCTCACTGCTCCTGCAGACACAAGGGCCACCGG
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000081349.9
ENSMUST00000099576.9
ENSMUST00000102547.10
ENSMUST00000161731.5
CDS-3UTR TCA 90 bp AGACTTCCCAAAGAAGGCACAGGGGACTTTCTGCAGATGGCCTCAGAAGGAGATCTCCACTTTCTTCTCTaGTGTCAGTTTGCTGACGGA +
Preference number: 4 (lower is better)
Translates to: RLPKEGTGDFLQMASEGDLHFLL*CQFADG
Trigger: TCCGTCAGCAAACTGACATCAGAGAAGAAAGTGGAG...ATCTCCTTCTGAGGCCATCTGCAGAAAGTCCCCTGTGCCTTCTTTGGGAAGTCT
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000081349.9
ENSMUST00000099576.9
ENSMUST00000102547.10
CDS-3UTR TCA 90 bp AACTCCCCGGTGGCCCTTGTGTCTGCAGGAGCAGTGAGGTGCTGTCTTTCATATTTGGAAGATAGAAGCTaGTATAGCAGAGTTCGGCAA +
Preference number: 4 (lower is better)
Translates to: NSPVALVSAGAVRCCLSYLEDRS*YSRVRQ
Trigger: TTGCCGAACTCTGCTATATCAGCTTCTATCTTCCAA...ATATGAAAGACAGCACCTCACTGCTCCTGCAGACACAAGGGCCACCGGGGAGTT
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000099576.9
ENSMUST00000102547.10
ENSMUST00000161731.5
CDS-3UTR TCA 90 bp AACTCCCCGGTGGCCCTTGTGTCTGCAGGAGCAGTGAGGTGCTGTCTTTCATATTTGTGGGAGTCTGTTTaGAAAATATGTCGCCTGGAT +
Preference number: 4 (lower is better)
Translates to: NSPVALVSAGAVRCCLSYLWESV*KICRLD
Trigger: ATCCAGGCGACATATTTTTCAAACAGACTCCCACAA...ATATGAAAGACAGCACCTCACTGCTCCTGCAGACACAAGGGCCACCGGGGAGTT
50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000099576.9
ENSMUST00000102547.10
ENSMUST00000161731.5
CDS-3UTR TCA 90 bp CTTGTGTCTGCAGGAGCAGTGAGGTGCTGTCTTTCATATTGTAACTTCCTTCTGTGGTCCTTCCCCATCTaGAATGCTGACTCCTGGCAG +
Preference number: 4 (lower is better)
Translates to: LVSAGAVRCCLSYCNFLLWSFPI*NADSWQ
Trigger: CTGCCAGGAGTCAGCATTTCAGATGGGGAAGGACCA...CAGAAGGAAGTTACAATATGAAAGACAGCACCTCACTGCTCCTGCAGACACAAG
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000099576.9
ENSMUST00000102547.10
ENSMUST00000161731.5
CDS-3UTR TCA 90 bp GCCCTTGTGTCTGCAGGAGCAGTGAGGTGCTGTCTTTCATATTGTAACTTCCTTAGCCTCCCGGAACTATaGGTCTCAGTTTCACCTCCT +
Preference number: 4 (lower is better)
Translates to: ALVSAGAVRCCLSYCNFLSLPEL*VSVSPP
Trigger: AGGAGGTGAAACTGAGACTCATAGTTCCGGGAGGCT...AAGGAAGTTACAATATGAAAGACAGCACCTCACTGCTCCTGCAGACACAAGGGC
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000099576.9
ENSMUST00000102547.10
ENSMUST00000161731.5
CDS-3UTR TCA 90 bp GCAGCATCCCTCAAGCCAACACAGCTCAACTATGAATTGCCATATTCATGGTCTGGGTGGCCCTTGTGTTaGGAGAGAAGCCCAACCTTT +
Preference number: 4 (lower is better)
Translates to: AASLKPTQLNYELPYSWSGWPLC*ERSPTF
Trigger: AAAGGTTGGGCTTCTCTCTCAACACAAGGGCCACCC...AGACCATGAATATGGCAATTCATAGTTGAGCTGTGTTGGCTTGAGGGATGCTGC
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000099576.9
CDS-3UTR TCA 90 bp TCCCCGGTGGCCCTTGTGTCTGCAGGAGCAGTGAGGTGCTGTCTTTCATATTGTTTGTGTGCGCTGGACTaGGGCGATGAATTATTAAAT +
Preference number: 4 (lower is better)
Translates to: SPVALVSAGAVRCCLSYCLCALD*GDELLN
Trigger: ATTTAATAATTCATCGCCTCAGTCCAGCGCACACAA...ACAATATGAAAGACAGCACCTCACTGCTCCTGCAGACACAAGGGCCACCGGGGA
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000099576.9
ENSMUST00000102547.10
ENSMUST00000161731.5
CDS-3UTR TCA 90 bp GCCCTTGTGTCTGCAGGAGCAGTGAGGTGCTGTCTTTCATATTGTAACTTCCTTGACCTTCGTAGTAGATaGTGGCTCCAAGGTGTCAGC +
Preference number: 4 (lower is better)
Translates to: ALVSAGAVRCCLSYCNFLDLRSR*WLQGVS
Trigger: GCTGACACCTTGGAGCCATCATCTACTACGAAGGTC...AAGGAAGTTACAATATGAAAGACAGCACCTCACTGCTCCTGCAGACACAAGGGC
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000099576.9
ENSMUST00000102547.10
ENSMUST00000161731.5
CDS-3UTR GCA 90 bp GCCCTTGTGTCTGCAGGAGCAGTGAGGTGCTGTCTTTCATATTGTAACTTCCTTTTGTCCTTGAAAGGCTaGAGGTACTCCCTTGGGGAC +
Preference number: 4 (lower is better)
Translates to: ALVSAGAVRCCLSYCNFLLSLKG*RYSLGD
Trigger: GTCCCCAAGGGAGTACCTGCAGCCTTTCAAGGACAA...AAGGAAGTTACAATATGAAAGACAGCACCTCACTGCTCCTGCAGACACAAGGGC
50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000081349.9
ENSMUST00000099576.9
ENSMUST00000102547.10
ENSMUST00000161731.5
CDS-3UTR GCA 90 bp GTGGCCCTTGTGTCTGCAGGAGCAGTGAGGTGCTGTCTTTCATATTGTAACTTCATTACTGACAGCTCCTaGAACTTTCCCTCCTGGCTC +
Preference number: 4 (lower is better)
Translates to: VALVSAGAVRCCLSYCNFITDSS*NFPSWL
Trigger: GAGCCAGGAGGGAAAGTTGCAGGAGCTGTCAGTAAT...GAAGTTACAATATGAAAGACAGCACCTCACTGCTCCTGCAGACACAAGGGCCAC
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000099576.9
ENSMUST00000102547.10
ENSMUST00000161731.5
CDS-3UTR GCA 90 bp CCTTGCTTCCCTCTGTCTCAGAAGGTGGAGAGAAAACACTGCAAAGGTCTCATGAATTTATGGCCACTCTaGGGTAGCCCAGCCTTCCTT +
Preference number: 4 (lower is better)
Translates to: PCFPLSQKVERKHCKGLMNLWPL*GSPAFL
Trigger: AAGGAAGGCTGGGCTACCGCAGAGTGGCCATAAATT...CATGAGACCTTTGCAGTGTTTTCTCTCCACCTTCTGAGACAGAGGGAAGCAAGG
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000099576.9
CDS-3UTR GCA 90 bp GTGGCCCTTGTGTCTGCAGGAGCAGTGAGGTGCTGTCTTTCATATTGTAACTTCAATTTATGGCCACTCTaGGGTAGCCCAGCCTTCCTT +
Preference number: 4 (lower is better)
Translates to: VALVSAGAVRCCLSYCNFNLWPL*GSPAFL
Trigger: AAGGAAGGCTGGGCTACCGCAGAGTGGCCATAAATT...GAAGTTACAATATGAAAGACAGCACCTCACTGCTCCTGCAGACACAAGGGCCAC
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000099576.9
ENSMUST00000102547.10
ENSMUST00000161731.5
CDS-3UTR CCA 90 bp CTTGTGTCTGCAGGAGCAGTGAGGTGCTGTCTTTCATATTGTAACTTCCTTCTGTCTCTGGGGCTCTTGTaGCTCTCCTGGTCAGTACTG +
Preference number: 4 (lower is better)
Translates to: LVSAGAVRCCLSYCNFLLSLGLL*LSWSVL
Trigger: CAGTACTGACCAGGAGAGCCACAAGAGCCCCAGAGA...CAGAAGGAAGTTACAATATGAAAGACAGCACCTCACTGCTCCTGCAGACACAAG
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000081349.9
CDS-3UTR CCA 90 bp AACTCCCCGGTGGCCCTTGTGTCTGCAGGAGCAGTGAGGTGCTGTCTTTCATATAGCAGTCATCATCTGTaGAAATGCACACATCTCTCA +
Preference number: 4 (lower is better)
Translates to: NSPVALVSAGAVRCCLSYSSHHL*KCTHLS
Trigger: TGAGAGATGTGTGCATTTCCACAGATGATGACTGCT...ATATGAAAGACAGCACCTCACTGCTCCTGCAGACACAAGGGCCACCGGGGAGTT
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000081349.9
ENSMUST00000099576.9
ENSMUST00000102547.10
ENSMUST00000161731.5
CDS-3UTR CCA 90 bp TTCCCAAAGAAGGCACAGGGGACTTTCTGCAGATGGCCTCAGAAGGAGATGAGCTTCTTGGGTACTATCTaGCTGCTTCTGGTTGCTTTG +
Preference number: 4 (lower is better)
Translates to: FPKKAQGTFCRWPQKEMSFLGTI*LLLVAL
Trigger: CAAAGCAACCAGAAGCAGCCAGATAGTACCCAAGAA...GCTCATCTCCTTCTGAGGCCATCTGCAGAAAGTCCCCTGTGCCTTCTTTGGGAA
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000081349.9
ENSMUST00000099576.9
ENSMUST00000102547.10
CDS-3UTR CCA 90 bp GACTTCCCAAAGAAGGCACAGGGGACTTTCTGCAGATGGCCTCAGAAGGAGATGTTCTTGGGTACTATCTaGCTGCTTCTGGTTGCTTTG +
Preference number: 4 (lower is better)
Translates to: DFPKKAQGTFCRWPQKEMFLGTI*LLLVAL
Trigger: CAAAGCAACCAGAAGCAGCCAGATAGTACCCAAGAA...CATCTCCTTCTGAGGCCATCTGCAGAAAGTCCCCTGTGCCTTCTTTGGGAAGTC
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000081349.9
ENSMUST00000099576.9
ENSMUST00000102547.10
CDS-3UTR CCA 90 bp CTCTTGGGGATCACCATGTACCTCTTTTCTCATGACAAGGGTATATACTGGAAGCACAGGTGGTATGGGTaGTGCTGGAGGCAAAGGTCC +
Preference number: 4 (lower is better)
Translates to: LLGITMYLFSHDKGIYWKHRWYG*CWRQRS
Trigger: GGACCTTTGCCTCCAGCACCACCCATACCACCTGTG...CTTCCAGTATATACCCTTGTCATGAGAAAAGAGGTACATGGTGATCCCCAAGAG
50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000081349.9
ENSMUST00000099576.9
ENSMUST00000102547.10
CDS-3UTR CCA 90 bp CTCTTGGGGATCACCATGTACCTCTTTTCTCATGACAAGGGTATATACTGGAAGCACAGGACACACAGGTaGTATGGGTGGTGCTGGAGG +
Preference number: 4 (lower is better)
Translates to: LLGITMYLFSHDKGIYWKHRTHR*YGWCWR
Trigger: CCTCCAGCACCACCCATACCACCTGTGTGTCCTGTG...CTTCCAGTATATACCCTTGTCATGAGAAAAGAGGTACATGGTGATCCCCAAGAG
50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000081349.9
ENSMUST00000099576.9
ENSMUST00000102547.10
CDS-3UTR CCA 90 bp CTCTTGGGGATCACCATGTACCTCTTTTCTCATGACAAGGGTATATACTGGAAGTGGAGGAGGTGGTGGTaGTGGTGGTCCATCACTTGG +
Preference number: 4 (lower is better)
Translates to: LLGITMYLFSHDKGIYWKWRRWW*WWSITW
Trigger: CCAAGTGATGGACCACCACCACCACCACCTCCTCCA...CTTCCAGTATATACCCTTGTCATGAGAAAAGAGGTACATGGTGATCCCCAAGAG
50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000081349.9
ENSMUST00000099576.9
ENSMUST00000102547.10
CDS-3UTR CCA 90 bp TTCCCAAAGAAGGCACAGGGGACTTTCTGCAGATGGCCTCAGAAGGAGATGAGCCTGAAGATTATGCACTaGGCACGTTCGGCAAAATTG +
Preference number: 4 (lower is better)
Translates to: FPKKAQGTFCRWPQKEMSLKIMH*ARSAKL
Trigger: CAATTTTGCCGAACGTGCCCAGTGCATAATCTTCAG...GCTCATCTCCTTCTGAGGCCATCTGCAGAAAGTCCCCTGTGCCTTCTTTGGGAA
50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000081349.9
ENSMUST00000099576.9
ENSMUST00000102547.10
CDS-3UTR CCA 90 bp CTCTTGGGGATCACCATGTACCTCTTTTCTCATGACAAGGGTATATACTGGAAGAGTTGGTGGCCACGCTaGCTTCCTTCTGACGCAGTC +
Preference number: 4 (lower is better)
Translates to: LLGITMYLFSHDKGIYWKSWWPR*LPSDAV
Trigger: GACTGCGTCAGAAGGAAGCCAGCGTGGCCACCAACT...CTTCCAGTATATACCCTTGTCATGAGAAAAGAGGTACATGGTGATCCCCAAGAG
50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000081349.9
ENSMUST00000099576.9
ENSMUST00000102547.10
CDS-3UTR CCA 90 bp CTCTTGGGGATCACCATGTACCTCTTTTCTCATGACAAGGGTATATACTGGAAGGAGGCTGGTGATGTCTaGCCCCTCCCTGACTTGGTA +
Preference number: 4 (lower is better)
Translates to: LLGITMYLFSHDKGIYWKEAGDV*PLPDLV
Trigger: TACCAAGTCAGGGAGGGGCCAGACATCACCAGCCTC...CTTCCAGTATATACCCTTGTCATGAGAAAAGAGGTACATGGTGATCCCCAAGAG
50% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 2 transcripts:
ENSMUST00000099576.9
ENSMUST00000102547.10
CDS-3UTR CCA 90 bp GTGGCCCTTGTGTCTGCAGGAGCAGTGAGGTGCTGTCTTTCATATTGTAACTTCAAGAAAGGGAGCTACTaGAACAGACCTGGTCCTTCC +
Preference number: 4 (lower is better)
Translates to: VALVSAGAVRCCLSYCNFKKGSY*NRPGPS
Trigger: GGAAGGACCAGGTCTGTTCCAGTAGCTCCCTTTCTT...GAAGTTACAATATGAAAGACAGCACCTCACTGCTCCTGCAGACACAAGGGCCAC
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000099576.9
ENSMUST00000102547.10
ENSMUST00000161731.5
CDS-3UTR CCA 90 bp GTGGCCCTTGTGTCTGCAGGAGCAGTGAGGTGCTGTCTTTCATATTGTAACTTCGTTTCTGGGAAAGTGTaGGTGGCCCTTGTGTTGAGA +
Preference number: 4 (lower is better)
Translates to: VALVSAGAVRCCLSYCNFVSGKV*VALVLR
Trigger: TCTCAACACAAGGGCCACCCACACTTTCCCAGAAAC...GAAGTTACAATATGAAAGACAGCACCTCACTGCTCCTGCAGACACAAGGGCCAC
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000099576.9
ENSMUST00000102547.10
ENSMUST00000161731.5
CDS-3UTR CCA 90 bp CTTGTGTCTGCAGGAGCAGTGAGGTGCTGTCTTTCATATTGTAACTTCCTTCTGCAACTGGTGCTGGGGTaGAGCTGTGATCTTCTCTGG +
Preference number: 4 (lower is better)
Translates to: LVSAGAVRCCLSYCNFLLQLVLG*SCDLLW
Trigger: CCAGAGAAGATCACAGCTCCACCCCAGCACCAGTTG...CAGAAGGAAGTTACAATATGAAAGACAGCACCTCACTGCTCCTGCAGACACAAG
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000099576.9
ENSMUST00000102547.10
ENSMUST00000161731.5
CDS-3UTR CCA 90 bp AGGAAGAACCCAGACACATACAACTCTAGAACATCACGTTATTCTCTACGTGGCGGTGGCAACTGGTGCTaGGGTGGAGCTGTGATCTTC +
Preference number: 4 (lower is better)
Translates to: RKNPDTYNSRTSRYSLRGGGNWC*GGAVIF
Trigger: GAAGATCACAGCTCCACCCCAGCACCAGTTGCCACC...GCCACGTAGAGAATAACGTGATGTTCTAGAGTTGTATGTGTCTGGGTTCTTCCT
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000099576.9
3UTR CAA 72 bp AGGGACCACAGAGTAAAGGATGTCTGCAAGTGGAATTaGCCCTGCTGGTTAAGTCTCTTGCTCTTCCTCGAG +
Preference number: 4 (lower is better)
Translates to: RDHRVKDVCKWN*PCWLSLLLFLE
Trigger: CTCGAGGAAGAGCAAGAGACTTAACCAGCAGGGCAAATTCCACTTGCAGACATCCTTTACTCTGTGGTCCCT
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000099576.9
3UTR CAA 72 bp TATAAACTGATGTCTCAGGCAGAGATGGTAGGCTCTTaGCCCCCGCCCACCAGCCATCACAACCATTCAATT +
Preference number: 4 (lower is better)
Translates to: YKLMSQAEMVGS*PPPTSHHNHSI
Trigger: AATTGAATGGTTGTGATGGCTGGTGGGCGGGGGCAAAGAGCCTACCATCTCTGCCTGAGACATCAGTTTATA
50% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000099576.9
3UTR CAA 72 bp GCTGGAAGTTCCTCAGCTAAGCACAGGCCAGTGTCATaGGAATACCTGCTCTTGCAGGACAGAGTTACAACA +
Preference number: 4 (lower is better)
Translates to: AGSSSAKHRPVS*EYLLLQDRVTT
Trigger: TGTTGTAACTCTGTCCTGCAAGAGCAGGTATTCCAATGACACTGGCCTGTGCTTAGCTGAGGAACTTCCAGC
50% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000099576.9
CDS-3UTR TCA 90 bp CTCTTGGGGATCACCATGTACCTCTTTTCTCATGACAAGGGTATATACTGGAAGCAGCATCACAGGGCTTaGGGAAGGTCTCTCTGTCTG +
Preference number: 4 (lower is better)
Translates to: LLGITMYLFSHDKGIYWKQHHRA*GRSLCL
Trigger: CAGACAGAGAGACCTTCCTCAAGCCCTGTGATGCTG...CTTCCAGTATATACCCTTGTCATGAGAAAAGAGGTACATGGTGATCCCCAAGAG
49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000081349.9
ENSMUST00000099576.9
ENSMUST00000102547.10
CDS-3UTR TCA 90 bp AACTCCCCGGTGGCCCTTGTGTCTGCAGGAGCAGTGAGGTGCTGTCTTTCATATTTCGATGTAAGGATGTaGTACCCTCAGAAAATACAG +
Preference number: 4 (lower is better)
Translates to: NSPVALVSAGAVRCCLSYFDVRM*YPQKIQ
Trigger: CTGTATTTTCTGAGGGTATCACATCCTTACATCGAA...ATATGAAAGACAGCACCTCACTGCTCCTGCAGACACAAGGGCCACCGGGGAGTT
49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000081349.9
ENSMUST00000099576.9
ENSMUST00000102547.10
ENSMUST00000161731.5
CDS-3UTR TCA 90 bp CTCTTGGGGATCACCATGTACCTCTTTTCTCATGACAAGGGTATATACTGGAAGACACATAGCTGGGGGTaGCCTCCTTCTCTCCAGTCT +
Preference number: 4 (lower is better)
Translates to: LLGITMYLFSHDKGIYWKTHSWG*PPSLQS
Trigger: AGACTGGAGAGAAGGAGGTCACCCCCAGCTATGTGT...CTTCCAGTATATACCCTTGTCATGAGAAAAGAGGTACATGGTGATCCCCAAGAG
49% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 3 transcripts:
ENSMUST00000081349.9
ENSMUST00000099576.9
ENSMUST00000102547.10
CDS-3UTR TCA 90 bp AGACTTCCCAAAGAAGGCACAGGGGACTTTCTGCAGATGGCCTCAGAAGGAGATGCTTCCAAATGGTCTTaGAGTCACTGCAGAACTCAA +
Preference number: 4 (lower is better)
Translates to: RLPKEGTGDFLQMASEGDASKWS*SHCRTQ
Trigger: TTGAGTTCTGCAGTGACTTCAAGACCATTTGGAAGC...ATCTCCTTCTGAGGCCATCTGCAGAAAGTCCCCTGTGCCTTCTTTGGGAAGTCT
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000081349.9
ENSMUST00000099576.9
ENSMUST00000102547.10
CDS-3UTR TCA 90 bp TGGCTTCTACAGACACCAGGCACACAGGTGGTGCACATATATACACGTAGGCAACTCCACTTTCTTCTCTaGTGTCAGTTTGCTGACGGA +
Preference number: 4 (lower is better)
Translates to: WLLQTPGTQVVHIYTRRQLHFLL*CQFADG
Trigger: TCCGTCAGCAAACTGACATCAGAGAAGAAAGTGGAG...TTGCCTACGTGTATATATGTGCACCACCTGTGTGCCTGGTGTCTGTAGAAGCCA
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000099576.9
CDS-3UTR TCA 90 bp GCATTGTTCTTGTGGATTGACAAGAGACTTCCCAAAGAAGGCACAGGGGACTTTAGCCTCCCGGAACTATaGGTCTCAGTTTCACCTCCT +
Preference number: 4 (lower is better)
Translates to: ALFLWIDKRLPKEGTGDFSLPEL*VSVSPP
Trigger: AGGAGGTGAAACTGAGACTCATAGTTCCGGGAGGCT...AAAGTCCCCTGTGCCTTCTTTGGGAAGTCTCTTGTCAATCCACAAGAACAATGC
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000099576.9
ENSMUST00000102547.10
CDS-3UTR TCA 90 bp GCATTGTTCTTGTGGATTGACAAGAGACTTCCCAAAGAAGGCACAGGGGACTTTGACCTTCGTAGTAGATaGTGGCTCCAAGGTGTCAGC +
Preference number: 4 (lower is better)
Translates to: ALFLWIDKRLPKEGTGDFDLRSR*WLQGVS
Trigger: GCTGACACCTTGGAGCCATCATCTACTACGAAGGTC...AAAGTCCCCTGTGCCTTCTTTGGGAAGTCTCTTGTCAATCCACAAGAACAATGC
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000099576.9
ENSMUST00000102547.10
CDS-3UTR GCA 90 bp CCTTGCTTCCCTCTGTCTCAGAAGGTGGAGAGAAAACACTGCAAAGGTCTCATGCTGGCTGCTTCTGGTTaGTTTGCTTTCAGCATCACA +
Preference number: 4 (lower is better)
Translates to: PCFPLSQKVERKHCKGLMLAASG*FAFSIT
Trigger: TGTGATGCTGAAAGCAAAGCAACCAGAAGCAGCCAG...CATGAGACCTTTGCAGTGTTTTCTCTCCACCTTCTGAGACAGAGGGAAGCAAGG
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000099576.9
CDS-3UTR GCA 90 bp CTCCCCGGTGGCCCTTGTGTCTGCAGGAGCAGTGAGGTGCTGTCTTTCATATTGATCTGGGCTAACTCATaGAAAAATTGTTCAGGTTTG +
Preference number: 4 (lower is better)
Translates to: LPGGPCVCRSSEVLSFILIWANS*KNCSGL
Trigger: CAAACCTGAACAATTTTTGCATGAGTTAGCCCAGAT...CAATATGAAAGACAGCACCTCACTGCTCCTGCAGACACAAGGGCCACCGGGGAG
49% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 4 transcripts:
ENSMUST00000081349.9
ENSMUST00000099576.9
ENSMUST00000102547.10
ENSMUST00000161731.5
CDS-3UTR GCA 90 bp CTTGTGTCTGCAGGAGCAGTGAGGTGCTGTCTTTCATATTGTAACTTCCTTCTGTTGTCCTTGAAAGGCTaGAGGTACTCCCTTGGGGAC +
Preference number: 4 (lower is better)
Translates to: LVSAGAVRCCLSYCNFLLLSLKG*RYSLGD
Trigger: GTCCCCAAGGGAGTACCTGCAGCCTTTCAAGGACAA...CAGAAGGAAGTTACAATATGAAAGACAGCACCTCACTGCTCCTGCAGACACAAG
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000081349.9
ENSMUST00000099576.9
ENSMUST00000102547.10
ENSMUST00000161731.5
CDS-3UTR GCA 90 bp CTTAAGGTATCTGGCAAGTTCAAAGGTCCTGGAAAGTTGCTGAGGCAAGAGGTGGTTCTCTGCGCCAGTTaGCAGCACTCTGGAAATACT +
Preference number: 4 (lower is better)
Translates to: LKVSGKFKGPGKLLRQEVVLCAS*QHSGNT
Trigger: AGTATTTCCAGAGTGCTGGCAACTGGCGCAGAGAAC...CACCTCTTGCCTCAGCAACTTTCCAGGACCTTTGAACTTGCCAGATACCTTAAG
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000099576.9
CDS-3UTR GCA 90 bp AGGAAGAACCCAGACACATACAACTCTAGAACATCACGTTATTCTCTACGTGGCCCACCTCTCTGCCCCTaGATGTTTCCCATGGCTTTC +
Preference number: 4 (lower is better)
Translates to: RKNPDTYNSRTSRYSLRGPPLCP*MFPMAF
Trigger: GAAAGCCATGGGAAACATGCAGGGGCAGAGAGGTGG...GCCACGTAGAGAATAACGTGATGTTCTAGAGTTGTATGTGTCTGGGTTCTTCCT
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000099576.9
CDS-3UTR CCA 90 bp GACTTCCCAAAGAAGGCACAGGGGACTTTCTGCAGATGGCCTCAGAAGGAGATGATAAAACAACAGTGGTaGGCTTTTGGGTATCAAGGC +
Preference number: 4 (lower is better)
Translates to: DFPKKAQGTFCRWPQKEMIKQQW*AFGYQG
Trigger: GCCTTGATACCCAAAAGCCCACCACTGTTGTTTTAT...CATCTCCTTCTGAGGCCATCTGCAGAAAGTCCCCTGTGCCTTCTTTGGGAAGTC
49% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 1 transcripts:
ENSMUST00000081349.9
CDS-3UTR CCA 90 bp GGATCACCATGTACCTCTTTTCTCATGACAAGGGTATATACTGGAAGGCTTAGAAGCTTGGAGTCTGCCTaGAGTCCTGTCGTCCTGCTC +
Preference number: 4 (lower is better)
Translates to: GSPCTSFLMTRVYTGRLRSLESA*SPVVLL
Trigger: GAGCAGGACGACAGGACTCCAGGCAGACTCCAAGCT...TCTAAGCCTTCCAGTATATACCCTTGTCATGAGAAAAGAGGTACATGGTGATCC
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000081349.9
ENSMUST00000099576.9
ENSMUST00000102547.10
CDS-3UTR CCA 90 bp GCATTGTTCTTGTGGATTGACAAGAGACTTCCCAAAGAAGGCACAGGGGACTTTCTTTGTCTTTGGGGGTaGCCAGACAGCTTGGAGTCT +
Preference number: 4 (lower is better)
Translates to: ALFLWIDKRLPKEGTGDFLCLWG*PDSLES
Trigger: AGACTCCAAGCTGTCTGGCCACCCCCAAAGACAAAG...AAAGTCCCCTGTGCCTTCTTTGGGAAGTCTCTTGTCAATCCACAAGAACAATGC
49% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000081349.9
ENSMUST00000099576.9
ENSMUST00000102547.10
CDS-3UTR CCA 90 bp TTCCCAAAGAAGGCACAGGGGACTTTCTGCAGATGGCCTCAGAAGGAGATGAGCGTCTCTCTGTCTGTCTaGATGCACACATTTCTGAAA +
Preference number: 4 (lower is better)
Translates to: FPKKAQGTFCRWPQKEMSVSLSV*MHTFLK
Trigger: TTTCAGAAATGTGTGCATCCAGACAGACAGAGAGAC...GCTCATCTCCTTCTGAGGCCATCTGCAGAAAGTCCCCTGTGCCTTCTTTGGGAA
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000081349.9
ENSMUST00000099576.9
ENSMUST00000102547.10
CDS-3UTR CCA 90 bp AACTCCCCGGTGGCCCTTGTGTCTGCAGGAGCAGTGAGGTGCTGTCTTTCATATGTTGGTGCGGCGTCTTaGCTTTTATCATTTATTTGT +
Preference number: 4 (lower is better)
Translates to: NSPVALVSAGAVRCCLSYVGAAS*LLSFIC
Trigger: ACAAATAAATGATAAAAGCCAAGACGCCGCACCAAC...ATATGAAAGACAGCACCTCACTGCTCCTGCAGACACAAGGGCCACCGGGGAGTT
49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000081349.9
ENSMUST00000099576.9
ENSMUST00000102547.10
ENSMUST00000161731.5
CDS-3UTR CCA 90 bp TCCCCGGTGGCCCTTGTGTCTGCAGGAGCAGTGAGGTGCTGTCTTTCATATTGTGTTGGTGCGGCGTCTTaGCTTTTATCATTTATTTGT +
Preference number: 4 (lower is better)
Translates to: SPVALVSAGAVRCCLSYCVGAAS*LLSFIC
Trigger: ACAAATAAATGATAAAAGCCAAGACGCCGCACCAAC...ACAATATGAAAGACAGCACCTCACTGCTCCTGCAGACACAAGGGCCACCGGGGA
49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000081349.9
ENSMUST00000099576.9
ENSMUST00000102547.10
ENSMUST00000161731.5
CDS-3UTR CCA 90 bp AACTCCCCGGTGGCCCTTGTGTCTGCAGGAGCAGTGAGGTGCTGTCTTTCATATCTTCTCTCCAGTCTTTaGCTTCATTCCAAAATATCC +
Preference number: 4 (lower is better)
Translates to: NSPVALVSAGAVRCCLSYLLSSL*LHSKIS
Trigger: GGATATTTTGGAATGAAGCCAAAGACTGGAGAGAAG...ATATGAAAGACAGCACCTCACTGCTCCTGCAGACACAAGGGCCACCGGGGAGTT
49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000081349.9
ENSMUST00000099576.9
ENSMUST00000102547.10
ENSMUST00000161731.5
CDS-3UTR CCA 90 bp AAACCACGTGACAATAACTTTCCTTCAAACCACAGAAAGACAGCTAGCACCTGTAGTTGGTGGCCACGCTaGCTTCCTTCTGACGCAGTC +
Preference number: 4 (lower is better)
Translates to: KPRDNNFPSNHRKTASTCSWWPR*LPSDAV
Trigger: GACTGCGTCAGAAGGAAGCCAGCGTGGCCACCAACT...ACAGGTGCTAGCTGTCTTTCTGTGGTTTGAAGGAAAGTTATTGTCACGTGGTTT
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000099576.9
CDS-3UTR CCA 90 bp AGACTTCCCAAAGAAGGCACAGGGGACTTTCTGCAGATGGCCTCAGAAGGAGATGAAAAATATGTCGCCTaGATGTTCGTTTGGCTGCTG +
Preference number: 4 (lower is better)
Translates to: RLPKEGTGDFLQMASEGDEKYVA*MFVWLL
Trigger: CAGCAGCCAAACGAACATCCAGGCGACATATTTTTC...ATCTCCTTCTGAGGCCATCTGCAGAAAGTCCCCTGTGCCTTCTTTGGGAAGTCT
49% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000099576.9
ENSMUST00000102547.10
CDS-3UTR CCA 90 bp CTTAAGGTATCTGGCAAGTTCAAAGGTCCTGGAAAGTTGCTGAGGCAAGAGGTGAAGAAAGGGAGCTACTaGAACAGACCTGGTCCTTCC +
Preference number: 4 (lower is better)
Translates to: LKVSGKFKGPGKLLRQEVKKGSY*NRPGPS
Trigger: GGAAGGACCAGGTCTGTTCCAGTAGCTCCCTTTCTT...CACCTCTTGCCTCAGCAACTTTCCAGGACCTTTGAACTTGCCAGATACCTTAAG
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000099576.9
CDS-3UTR CCA 90 bp TTCCCAAAGAAGGCACAGGGGACTTTCTGCAGATGGCCTCAGAAGGAGATGAGCGAGGAAGTCAGCTTTTaGGATAAACTCAGTTTGGGT +
Preference number: 4 (lower is better)
Translates to: FPKKAQGTFCRWPQKEMSEEVSF*DKLSLG
Trigger: ACCCAAACTGAGTTTATCCCAAAAGCTGACTTCCTC...GCTCATCTCCTTCTGAGGCCATCTGCAGAAAGTCCCCTGTGCCTTCTTTGGGAA
49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000099576.9
ENSMUST00000102547.10
CDS-3UTR CCA 90 bp CTCTTGGGGATCACCATGTACCTCTTTTCTCATGACAAGGGTATATACTGGAAGCTCAGTTTCACCTCCTaGGAGGGTGAGGAAGTCAGC +
Preference number: 4 (lower is better)
Translates to: LLGITMYLFSHDKGIYWKLSFTS*EGEEVS
Trigger: GCTGACTTCCTCACCCTCCCAGGAGGTGAAACTGAG...CTTCCAGTATATACCCTTGTCATGAGAAAAGAGGTACATGGTGATCCCCAAGAG
49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000099576.9
ENSMUST00000102547.10
CDS-3UTR CCA 90 bp CTTGTGTCTGCAGGAGCAGTGAGGTGCTGTCTTTCATATTGTAACTTCCTTCTGCTCACTAGGCAGTGGTaGGAGCAGAAGGATCCTATG +
Preference number: 4 (lower is better)
Translates to: LVSAGAVRCCLSYCNFLLLTRQW*EQKDPM
Trigger: CATAGGATCCTTCTGCTCCCACCACTGCCTAGTGAG...CAGAAGGAAGTTACAATATGAAAGACAGCACCTCACTGCTCCTGCAGACACAAG
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000099576.9
ENSMUST00000102547.10
ENSMUST00000161731.5
CDS-3UTR CCA 90 bp ATGGCCTCAGAAGGAGATGAGCAAATGTCCCTAACTAGTCTTTCAGGAACTCCCTGTAGGATAGCAGCCTaGTATTCTGGTGGCAACTGG +
Preference number: 4 (lower is better)
Translates to: MASEGDEQMSLTSLSGTPCRIAA*YSGGNW
Trigger: CCAGTTGCCACCAGAATACCAGGCTGCTATCCTACA...GGGAGTTCCTGAAAGACTAGTTAGGGACATTTGCTCATCTCCTTCTGAGGCCAT
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000161731.5
CDS-3UTR TCA 90 bp CTCTTGGGGATCACCATGTACCTCTTTTCTCATGACAAGGGTATATACTGGAAGGCACATCTCTGCTGCTaGGAGAGTTACCAACCTCCT +
Preference number: 4 (lower is better)
Translates to: LLGITMYLFSHDKGIYWKAHLCC*ESYQPP
Trigger: AGGAGGTTGGTAACTCTCTCAGCAGCAGAGATGTGC...CTTCCAGTATATACCCTTGTCATGAGAAAAGAGGTACATGGTGATCCCCAAGAG
48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000081349.9
CDS-3UTR TCA 90 bp GGATCACCATGTACCTCTTTTCTCATGACAAGGGTATATACTGGAAGGCTTAGATCCCACGGACCCAAATaGCTTCCTCATTGTCCACGC +
Preference number: 4 (lower is better)
Translates to: GSPCTSFLMTRVYTGRLRSHGPK*LPHCPR
Trigger: GCGTGGACAATGAGGAAGTCATTTGGGTCCGTGGGA...TCTAAGCCTTCCAGTATATACCCTTGTCATGAGAAAAGAGGTACATGGTGATCC
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000081349.9
CDS-3UTR TCA 90 bp ATGGCCTCAGAAGGAGATGAGCAAATGTCCCTAACTAGTCTTTCAGGAACTCCCTGCTCACCCCGGATGTaGAATGTCTTGAGTTCAAAC +
Preference number: 4 (lower is better)
Translates to: MASEGDEQMSLTSLSGTPCSPRM*NVLSSN
Trigger: GTTTGAACTCAAGACATTTCACATCCGGGGTGAGCA...GGGAGTTCCTGAAAGACTAGTTAGGGACATTTGCTCATCTCCTTCTGAGGCCAT
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000081349.9
ENSMUST00000099576.9
ENSMUST00000102547.10
ENSMUST00000161731.5
CDS-3UTR TCA 90 bp GCATTGTTCTTGTGGATTGACAAGAGACTTCCCAAAGAAGGCACAGGGGACTTTGGGGATATCTTATGCTaGCTAGATGAGGAGGTGCCT +
Preference number: 4 (lower is better)
Translates to: ALFLWIDKRLPKEGTGDFGDILC*LDEEVP
Trigger: AGGCACCTCCTCATCTAGTCAGCATAAGATATCCCC...AAAGTCCCCTGTGCCTTCTTTGGGAAGTCTCTTGTCAATCCACAAGAACAATGC
48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000081349.9
ENSMUST00000099576.9
ENSMUST00000102547.10
CDS-3UTR TCA 90 bp CTTGTGTCTGCAGGAGCAGTGAGGTGCTGTCTTTCATATTGTAACTTCCTTCTGGGGGATATCTTATGCTaGCTAGATGAGGAGGTGCCT +
Preference number: 4 (lower is better)
Translates to: LVSAGAVRCCLSYCNFLLGDILC*LDEEVP
Trigger: AGGCACCTCCTCATCTAGTCAGCATAAGATATCCCC...CAGAAGGAAGTTACAATATGAAAGACAGCACCTCACTGCTCCTGCAGACACAAG
48% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 4 transcripts:
ENSMUST00000081349.9
ENSMUST00000099576.9
ENSMUST00000102547.10
ENSMUST00000161731.5
CDS-3UTR TCA 90 bp GGATCACCATGTACCTCTTTTCTCATGACAAGGGTATATACTGGAAGGCTTAGAGGCTGGAAGAAGAGCTaGGTCCAAAGGACAGTCCAG +
Preference number: 4 (lower is better)
Translates to: GSPCTSFLMTRVYTGRLRGWKKS*VQRTVQ
Trigger: CTGGACTGTCCTTTGGACTCAGCTCTTCTTCCAGCC...TCTAAGCCTTCCAGTATATACCCTTGTCATGAGAAAAGAGGTACATGGTGATCC
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000081349.9
ENSMUST00000099576.9
ENSMUST00000102547.10
CDS-3UTR TCA 90 bp ATGGCCTCAGAAGGAGATGAGCAAATGTCCCTAACTAGTCTTTCAGGAACTCCCCTCCACTTTCTTCTCTaGTGTCAGTTTGCTGACGGA +
Preference number: 4 (lower is better)
Translates to: MASEGDEQMSLTSLSGTPLHFLL*CQFADG
Trigger: TCCGTCAGCAAACTGACATCAGAGAAGAAAGTGGAG...GGGAGTTCCTGAAAGACTAGTTAGGGACATTTGCTCATCTCCTTCTGAGGCCAT
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000081349.9
ENSMUST00000099576.9
ENSMUST00000102547.10
ENSMUST00000161731.5
CDS-3UTR TCA 90 bp GGATCACCATGTACCTCTTTTCTCATGACAAGGGTATATACTGGAAGGCTTAGATGGTCCTTCCCCATCTaGAATGCTGACTCCTGGCAG +
Preference number: 4 (lower is better)
Translates to: GSPCTSFLMTRVYTGRLRWSFPI*NADSWQ
Trigger: CTGCCAGGAGTCAGCATTTCAGATGGGGAAGGACCA...TCTAAGCCTTCCAGTATATACCCTTGTCATGAGAAAAGAGGTACATGGTGATCC
48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000099576.9
ENSMUST00000102547.10
CDS-3UTR GCA 90 bp TTCCCAAAGAAGGCACAGGGGACTTTCTGCAGATGGCCTCAGAAGGAGATGAGCCGCTTTCCTAACTGTTaGTTGAGATTTTCAATGGCT +
Preference number: 4 (lower is better)
Translates to: FPKKAQGTFCRWPQKEMSRFPNC*LRFSMA
Trigger: AGCCATTGAAAATCTCAAGCAACAGTTAGGAAAGCG...GCTCATCTCCTTCTGAGGCCATCTGCAGAAAGTCCCCTGTGCCTTCTTTGGGAA
48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000081349.9
ENSMUST00000099576.9
ENSMUST00000102547.10
CDS-3UTR GCA 90 bp CCGGTGGCCCTTGTGTCTGCAGGAGCAGTGAGGTGCTGTCTTTCATATTGTAACCATCATCTGTGGAAATaGACACATCTCTCATCTCTT +
Preference number: 4 (lower is better)
Translates to: PVALVSAGAVRCCLSYCNHHLWK*THLSSL
Trigger: AAGAGATGAGAGATGTGTGCATTTCCACAGATGATG...GTTACAATATGAAAGACAGCACCTCACTGCTCCTGCAGACACAAGGGCCACCGG
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000081349.9
ENSMUST00000099576.9
ENSMUST00000102547.10
ENSMUST00000161731.5
CDS-3UTR GCA 90 bp AACTCCCCGGTGGCCCTTGTGTCTGCAGGAGCAGTGAGGTGCTGTCTTTCATATATCTGGGCTAACTCATaGAAAAATTGTTCAGGTTTG +
Preference number: 4 (lower is better)
Translates to: NSPVALVSAGAVRCCLSYIWANS*KNCSGL
Trigger: CAAACCTGAACAATTTTTGCATGAGTTAGCCCAGAT...ATATGAAAGACAGCACCTCACTGCTCCTGCAGACACAAGGGCCACCGGGGAGTT
48% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 4 transcripts:
ENSMUST00000081349.9
ENSMUST00000099576.9
ENSMUST00000102547.10
ENSMUST00000161731.5
CDS-3UTR GCA 90 bp CTCTTGGGGATCACCATGTACCTCTTTTCTCATGACAAGGGTATATACTGGAAGTTGTCCTTGAAAGGCTaGAGGTACTCCCTTGGGGAC +
Preference number: 4 (lower is better)
Translates to: LLGITMYLFSHDKGIYWKLSLKG*RYSLGD
Trigger: GTCCCCAAGGGAGTACCTGCAGCCTTTCAAGGACAA...CTTCCAGTATATACCCTTGTCATGAGAAAAGAGGTACATGGTGATCCCCAAGAG
48% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 3 transcripts:
ENSMUST00000081349.9
ENSMUST00000099576.9
ENSMUST00000102547.10
CDS-3UTR GCA 90 bp ATGAATTGCCATATTCATGGTCTTCTGATATTCTGCTCACTTATAACGTCCCCTACTTCCGAGTCCTGCTaGTCCACCTCTCTGCCCCTG +
Preference number: 4 (lower is better)
Translates to: MNCHIHGLLIFCSLITSPTSESC*STSLPL
Trigger: CAGGGGCAGAGAGGTGGAGCAGCAGGACTCGGAAGT...AGGGGACGTTATAAGTGAGCAGAATATCAGAAGACCATGAATATGGCAATTCAT
48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000099576.9
CDS-3UTR CCA 90 bp CTCTTGGGGATCACCATGTACCTCTTTTCTCATGACAAGGGTATATACTGGAAGGTCTGTTGCTGCGGGTaGGATTTGAGACCCTTCTTC +
Preference number: 4 (lower is better)
Translates to: LLGITMYLFSHDKGIYWKVCCCG*DLRPFF
Trigger: GAAGAAGGGTCTCAAATCCCACCCGCAGCAACAGAC...CTTCCAGTATATACCCTTGTCATGAGAAAAGAGGTACATGGTGATCCCCAAGAG
48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000081349.9
CDS-3UTR CCA 90 bp ATGGCCTCAGAAGGAGATGAGCAAATGTCCCTAACTAGTCTTTCAGGAACTCCCCTTCTGTTCGGTCCTTaGCATGTCAATGTTGAGCAG +
Preference number: 4 (lower is better)
Translates to: MASEGDEQMSLTSLSGTPLLFGP*HVNVEQ
Trigger: CTGCTCAACATTGACATGCCAAGGACCGAACAGAAG...GGGAGTTCCTGAAAGACTAGTTAGGGACATTTGCTCATCTCCTTCTGAGGCCAT
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000081349.9
CDS-3UTR CCA 90 bp CTCTTGGGGATCACCATGTACCTCTTTTCTCATGACAAGGGTATATACTGGAAGCTCCAAGGCAGTCTCTaGTGTTCTTGCCTTCACCTG +
Preference number: 4 (lower is better)
Translates to: LLGITMYLFSHDKGIYWKLQGSL*CSCLHL
Trigger: CAGGTGAAGGCAAGAACACCAGAGACTGCCTTGGAG...CTTCCAGTATATACCCTTGTCATGAGAAAAGAGGTACATGGTGATCCCCAAGAG
48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000081349.9
CDS-3UTR CCA 90 bp CTCTTGGGGATCACCATGTACCTCTTTTCTCATGACAAGGGTATATACTGGAAGTGTGTCCTTTGTCTTTaGGGGTGGCCAGACAGCTTG +
Preference number: 4 (lower is better)
Translates to: LLGITMYLFSHDKGIYWKCVLCL*GWPDSL
Trigger: CAAGCTGTCTGGCCACCCCCAAAGACAAAGGACACA...CTTCCAGTATATACCCTTGTCATGAGAAAAGAGGTACATGGTGATCCCCAAGAG
48% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 3 transcripts:
ENSMUST00000081349.9
ENSMUST00000099576.9
ENSMUST00000102547.10
CDS-3UTR CCA 90 bp ATGGCCTCAGAAGGAGATGAGCAAATGTCCCTAACTAGTCTTTCAGGAACTCCCTTTGAGGGAGAGAGCTaGGTTAAGGAGATAGTCAGC +
Preference number: 4 (lower is better)
Translates to: MASEGDEQMSLTSLSGTPFEGES*VKEIVS
Trigger: GCTGACTATCTCCTTAACCCAGCTCTCTCCCTCAAA...GGGAGTTCCTGAAAGACTAGTTAGGGACATTTGCTCATCTCCTTCTGAGGCCAT
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000081349.9
ENSMUST00000099576.9
ENSMUST00000102547.10
ENSMUST00000161731.5
CDS-3UTR CCA 90 bp ACAATTACATATTCCTGTAGTGTTCCCAAACATAACTTTGCATTGTTCTTGTGGAGGTCCAAGTCCAGGTaGGAGGGGCGGAGGTGGAGG +
Preference number: 4 (lower is better)
Translates to: TITYSCSVPKHNFALFLWRSKSR*EGRRWR
Trigger: CCTCCACCTCCGCCCCTCCCACCTGGACTTGGACCT...CCACAAGAACAATGCAAAGTTATGTTTGGGAACACTACAGGAATATGTAATTGT
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000081349.9
ENSMUST00000099576.9
ENSMUST00000102547.10
CDS-3UTR CCA 90 bp CCAACACAGCTCAACTATGAATTGCCATATTCATGGTCTTCTGATATTCTGCTCAGGTGGTGGTGGTGGTaGTCCATCACTTGGAGGCAC +
Preference number: 4 (lower is better)
Translates to: PTQLNYELPYSWSSDILLRWWWW*SITWRH
Trigger: GTGCCTCCAAGTGATGGACCACCACCACCACCACCT...GAGCAGAATATCAGAAGACCATGAATATGGCAATTCATAGTTGAGCTGTGTTGG
48% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000099576.9
CDS-3UTR CCA 90 bp TCCCCGGTGGCCCTTGTGTCTGCAGGAGCAGTGAGGTGCTGTCTTTCATATTGTTCTGACTTCCCCTTTTaGAAGATAGAAGCTGATATA +
Preference number: 4 (lower is better)
Translates to: SPVALVSAGAVRCCLSYCSDFPF*KIEADI
Trigger: TATATCAGCTTCTATCTTCCAAAAGGGGAAGTCAGA...ACAATATGAAAGACAGCACCTCACTGCTCCTGCAGACACAAGGGCCACCGGGGA
48% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 3 transcripts:
ENSMUST00000099576.9
ENSMUST00000102547.10
ENSMUST00000161731.5
CDS-3UTR CCA 90 bp CTTGTGTCTGCAGGAGCAGTGAGGTGCTGTCTTTCATATTGTAACTTCCTTCTGAAGAAAGGGAGCTACTaGAACAGACCTGGTCCTTCC +
Preference number: 4 (lower is better)
Translates to: LVSAGAVRCCLSYCNFLLKKGSY*NRPGPS
Trigger: GGAAGGACCAGGTCTGTTCCAGTAGCTCCCTTTCTT...CAGAAGGAAGTTACAATATGAAAGACAGCACCTCACTGCTCCTGCAGACACAAG
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000099576.9
ENSMUST00000102547.10
ENSMUST00000161731.5
CDS-3UTR CCA 90 bp GGATCACCATGTACCTCTTTTCTCATGACAAGGGTATATACTGGAAGGCTTAGACTCAGTTTGGGTCTCTaGGCCATAGGCAACCCTTCC +
Preference number: 4 (lower is better)
Translates to: GSPCTSFLMTRVYTGRLRLSLGL*AIGNPS
Trigger: GGAAGGGTTGCCTATGGCCCAGAGACCCAAACTGAG...TCTAAGCCTTCCAGTATATACCCTTGTCATGAGAAAAGAGGTACATGGTGATCC
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000099576.9
ENSMUST00000102547.10
CDS-3UTR CCA 90 bp CTTGTGTCTGCAGGAGCAGTGAGGTGCTGTCTTTCATATTGTAACTTCCTTCTGAGCCCAGCCTTCCTTTaGCTTCGAGTTTCTGGGAAA +
Preference number: 4 (lower is better)
Translates to: LVSAGAVRCCLSYCNFLLSPAFL*LRVSGK
Trigger: TTTCCCAGAAACTCGAAGCCAAAGGAAGGCTGGGCT...CAGAAGGAAGTTACAATATGAAAGACAGCACCTCACTGCTCCTGCAGACACAAG
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000099576.9
ENSMUST00000102547.10
ENSMUST00000161731.5
CDS-3UTR CCA 90 bp CTCTTGGGGATCACCATGTACCTCTTTTCTCATGACAAGGGTATATACTGGAAGCTCACTAGGCAGTGGTaGGAGCAGAAGGATCCTATG +
Preference number: 4 (lower is better)
Translates to: LLGITMYLFSHDKGIYWKLTRQW*EQKDPM
Trigger: CATAGGATCCTTCTGCTCCCACCACTGCCTAGTGAG...CTTCCAGTATATACCCTTGTCATGAGAAAAGAGGTACATGGTGATCCCCAAGAG
48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000099576.9
ENSMUST00000102547.10
CDS-3UTR CCA 90 bp CTTGTGTCTGCAGGAGCAGTGAGGTGCTGTCTTTCATATTGTAACTTCCTTCTGAGCTGTGATCTTCTCTaGCCCCAAGCCTTTTTCGGA +
Preference number: 4 (lower is better)
Translates to: LVSAGAVRCCLSYCNFLLSCDLL*PQAFFG
Trigger: TCCGAAAAAGGCTTGGGGCCAGAGAAGATCACAGCT...CAGAAGGAAGTTACAATATGAAAGACAGCACCTCACTGCTCCTGCAGACACAAG
48% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000099576.9
ENSMUST00000102547.10
ENSMUST00000161731.5
CDS-3UTR TCA 90 bp ATCTCAATAGCTGATGCTCACTTCCAGCATCAAAACTTCTTCTCCAGATTAAGGCAGCATCACAGGGCTTaGGGAAGGTCTCTCTGTCTG +
Preference number: 4 (lower is better)
Translates to: ISIADAHFQHQNFFSRLRQHHRA*GRSLCL
Trigger: CAGACAGAGAGACCTTCCTCAAGCCCTGTGATGCTG...CCTTAATCTGGAGAAGAAGTTTTGATGCTGGAAGTGAGCATCAGCTATTGAGAT
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000099576.9
CDS-3UTR TCA 90 bp CTCTTGGGGATCACCATGTACCTCTTTTCTCATGACAAGGGTATATACTGGAAGGGAGGTCTTCAAACTTaGCTTGAGAGGCCAGGAAGA +
Preference number: 4 (lower is better)
Translates to: LLGITMYLFSHDKGIYWKGGLQT*LERPGR
Trigger: TCTTCCTGGCCTCTCAAGTCAAGTTTGAAGACCTCC...CTTCCAGTATATACCCTTGTCATGAGAAAAGAGGTACATGGTGATCCCCAAGAG
47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000081349.9
ENSMUST00000099576.9
ENSMUST00000102547.10
CDS-3UTR TCA 90 bp ATGGCCTCAGAAGGAGATGAGCAAATGTCCCTAACTAGTCTTTCAGGAACTCCCTTGCTGACGGATGCCTaGGCCATTTTCAATCTTTCT +
Preference number: 4 (lower is better)
Translates to: MASEGDEQMSLTSLSGTPLLTDA*AIFNLS
Trigger: AGAAAGATTGAAAATGGCTCAGGCATCCGTCAGCAA...GGGAGTTCCTGAAAGACTAGTTAGGGACATTTGCTCATCTCCTTCTGAGGCCAT
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000081349.9
ENSMUST00000099576.9
ENSMUST00000102547.10
ENSMUST00000161731.5
CDS-3UTR TCA 90 bp TGGCTTCTACAGACACCAGGCACACAGGTGGTGCACATATATACACGTAGGCAATTGGAAGATAGAAGCTaGTATAGCAGAGTTCGGCAA +
Preference number: 4 (lower is better)
Translates to: WLLQTPGTQVVHIYTRRQLEDRS*YSRVRQ
Trigger: TTGCCGAACTCTGCTATATCAGCTTCTATCTTCCAA...TTGCCTACGTGTATATATGTGCACCACCTGTGTGCCTGGTGTCTGTAGAAGCCA
47% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000099576.9
CDS-3UTR TCA 90 bp CCAACACAGCTCAACTATGAATTGCCATATTCATGGTCTTCTGATATTCTGCTCTGTCTGGCCCCTCCCTaGCTTGGTAGCAGTTATGGA +
Preference number: 4 (lower is better)
Translates to: PTQLNYELPYSWSSDILLCLAPP*LGSSYG
Trigger: TCCATAACTGCTACCAAGTCAGGGAGGGGCCAGACA...GAGCAGAATATCAGAAGACCATGAATATGGCAATTCATAGTTGAGCTGTGTTGG
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000099576.9
CDS-3UTR TCA 90 bp CCTTGCTTCCCTCTGTCTCAGAAGGTGGAGAGAAAACACTGCAAAGGTCTCATGTTGTGGGAGTCTGTTTaGAAAATATGTCGCCTGGAT +
Preference number: 4 (lower is better)
Translates to: PCFPLSQKVERKHCKGLMLWESV*KICRLD
Trigger: ATCCAGGCGACATATTTTTCAAACAGACTCCCACAA...CATGAGACCTTTGCAGTGTTTTCTCTCCACCTTCTGAGACAGAGGGAAGCAAGG
47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000099576.9
CDS-3UTR GCA 90 bp CTCTTGGGGATCACCATGTACCTCTTTTCTCATGACAAGGGTATATACTGGAAGGGGCGTGGATGTCTTTaGTGTCTTTTGAGGGAGAGA +
Preference number: 4 (lower is better)
Translates to: LLGITMYLFSHDKGIYWKGRGCL*CLLRER
Trigger: TCTCTCCCTCAAAAGACAGCAAAGACATCCACGCCC...CTTCCAGTATATACCCTTGTCATGAGAAAAGAGGTACATGGTGATCCCCAAGAG
47% GC, longest homopolymer 4 nt, total homopolymer stretches 16 nt.
Matches the following 3 transcripts:
ENSMUST00000081349.9
ENSMUST00000099576.9
ENSMUST00000102547.10
CDS-3UTR GCA 90 bp ATGGCCTCAGAAGGAGATGAGCAAATGTCCCTAACTAGTCTTTCAGGAACTCCCCAGTTTGCTGACGGATaGCTGAGCCATTTTCAATCT +
Preference number: 4 (lower is better)
Translates to: MASEGDEQMSLTSLSGTPQFADG*LSHFQS
Trigger: AGATTGAAAATGGCTCAGGCATCCGTCAGCAAACTG...GGGAGTTCCTGAAAGACTAGTTAGGGACATTTGCTCATCTCCTTCTGAGGCCAT
47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000081349.9
ENSMUST00000099576.9
ENSMUST00000102547.10
ENSMUST00000161731.5
CDS-3UTR GCA 90 bp GCCCTTGTGTCTGCAGGAGCAGTGAGGTGCTGTCTTTCATATTGTAACTTCCTTCAGTTTGCTGACGGATaGCTGAGCCATTTTCAATCT +
Preference number: 4 (lower is better)
Translates to: ALVSAGAVRCCLSYCNFLQFADG*LSHFQS
Trigger: AGATTGAAAATGGCTCAGGCATCCGTCAGCAAACTG...AAGGAAGTTACAATATGAAAGACAGCACCTCACTGCTCCTGCAGACACAAGGGC
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000081349.9
ENSMUST00000099576.9
ENSMUST00000102547.10
ENSMUST00000161731.5
CDS-3UTR GCA 90 bp CTTGTGTCTGCAGGAGCAGTGAGGTGCTGTCTTTCATATTGTAACTTCCTTCTGCACTCTCTATCACCTTaGGGAGAACCTTGTTCACAG +
Preference number: 4 (lower is better)
Translates to: LVSAGAVRCCLSYCNFLLHSLSP*GEPCSQ
Trigger: CTGTGAACAAGGTTCTCCGCAAGGTGATAGAGAGTG...CAGAAGGAAGTTACAATATGAAAGACAGCACCTCACTGCTCCTGCAGACACAAG
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000099576.9
ENSMUST00000102547.10
ENSMUST00000161731.5
CDS-3UTR CCA 90 bp GGATCACCATGTACCTCTTTTCTCATGACAAGGGTATATACTGGAAGGCTTAGACTTTGTCTTTGGGGGTaGCCAGACAGCTTGGAGTCT +
Preference number: 4 (lower is better)
Translates to: GSPCTSFLMTRVYTGRLRLCLWG*PDSLES
Trigger: AGACTCCAAGCTGTCTGGCCACCCCCAAAGACAAAG...TCTAAGCCTTCCAGTATATACCCTTGTCATGAGAAAAGAGGTACATGGTGATCC
47% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000081349.9
ENSMUST00000099576.9
ENSMUST00000102547.10
CDS-3UTR CCA 90 bp GGATCACCATGTACCTCTTTTCTCATGACAAGGGTATATACTGGAAGGCTTAGATGTGTCCTTTGTCTTTaGGGGTGGCCAGACAGCTTG +
Preference number: 4 (lower is better)
Translates to: GSPCTSFLMTRVYTGRLRCVLCL*GWPDSL
Trigger: CAAGCTGTCTGGCCACCCCCAAAGACAAAGGACACA...TCTAAGCCTTCCAGTATATACCCTTGTCATGAGAAAAGAGGTACATGGTGATCC
47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000081349.9
ENSMUST00000099576.9
ENSMUST00000102547.10
CDS-3UTR CCA 90 bp TGGCTTCTACAGACACCAGGCACACAGGTGGTGCACATATATACACGTAGGCAAAGCAGTCATCATCTGTaGAAATGCACACATCTCTCA +
Preference number: 4 (lower is better)
Translates to: WLLQTPGTQVVHIYTRRQSSHHL*KCTHLS
Trigger: TGAGAGATGTGTGCATTTCCACAGATGATGACTGCT...TTGCCTACGTGTATATATGTGCACCACCTGTGTGCCTGGTGTCTGTAGAAGCCA
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000099576.9
CDS-3UTR CCA 90 bp CTTGTGTCTGCAGGAGCAGTGAGGTGCTGTCTTTCATATTGTAACTTCCTTCTGGTCTGGAATGGGGCGTaGATGTCTTTGCTGTCTTTT +
Preference number: 4 (lower is better)
Translates to: LVSAGAVRCCLSYCNFLLVWNGA*MSLLSF
Trigger: AAAAGACAGCAAAGACATCCACGCCCCATTCCAGAC...CAGAAGGAAGTTACAATATGAAAGACAGCACCTCACTGCTCCTGCAGACACAAG
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000081349.9
ENSMUST00000099576.9
ENSMUST00000102547.10
ENSMUST00000161731.5
CDS-3UTR CCA 90 bp TCCCCGGTGGCCCTTGTGTCTGCAGGAGCAGTGAGGTGCTGTCTTTCATATTGTTCAAGTCTTCTTCTTTaGATGTCTCATAGTACTTTC +
Preference number: 4 (lower is better)
Translates to: SPVALVSAGAVRCCLSYCSSLLL*MSHSTF
Trigger: GAAAGTACTATGAGACATCCAAAGAAGAAGACTTGA...ACAATATGAAAGACAGCACCTCACTGCTCCTGCAGACACAAGGGCCACCGGGGA
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000081349.9
ENSMUST00000099576.9
ENSMUST00000102547.10
ENSMUST00000161731.5
CDS-3UTR CCA 90 bp GACTTCCCAAAGAAGGCACAGGGGACTTTCTGCAGATGGCCTCAGAAGGAGATGGCAAAATTGGGAATCTaGGCTAACTCATGCAAAAAT +
Preference number: 4 (lower is better)
Translates to: DFPKKAQGTFCRWPQKEMAKLGI*ANSCKN
Trigger: ATTTTTGCATGAGTTAGCCCAGATTCCCAATTTTGC...CATCTCCTTCTGAGGCCATCTGCAGAAAGTCCCCTGTGCCTTCTTTGGGAAGTC
47% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 3 transcripts:
ENSMUST00000081349.9
ENSMUST00000099576.9
ENSMUST00000102547.10
CDS-3UTR CCA 90 bp ATGGCCTCAGAAGGAGATGAGCAAATGTCCCTAACTAGTCTTTCAGGAACTCCCCTGAAGATTATGCACTaGGCACGTTCGGCAAAATTG +
Preference number: 4 (lower is better)
Translates to: MASEGDEQMSLTSLSGTPLKIMH*ARSAKL
Trigger: CAATTTTGCCGAACGTGCCCAGTGCATAATCTTCAG...GGGAGTTCCTGAAAGACTAGTTAGGGACATTTGCTCATCTCCTTCTGAGGCCAT
47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000081349.9
ENSMUST00000099576.9
ENSMUST00000102547.10
ENSMUST00000161731.5
CDS-3UTR CCA 90 bp AGGAAGAACCCAGACACATACAACTCTAGAACATCACGTTATTCTCTACGTGGCCAGGAAGAAATCCTGTaGTTCAGGCAGCGGGAAAAC +
Preference number: 4 (lower is better)
Translates to: RKNPDTYNSRTSRYSLRGQEEIL*FRQREN
Trigger: GTTTTCCCGCTGCCTGAACCACAGGATTTCTTCCTG...GCCACGTAGAGAATAACGTGATGTTCTAGAGTTGTATGTGTCTGGGTTCTTCCT
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000099576.9
CDS-3UTR CCA 90 bp GCCCTTGTGTCTGCAGGAGCAGTGAGGTGCTGTCTTTCATATTGTAACTTCCTTTCTTGGCCACCACTTTaGAAACAGGTTTCTTACTGC +
Preference number: 4 (lower is better)
Translates to: ALVSAGAVRCCLSYCNFLSWPPL*KQVSYC
Trigger: GCAGTAAGAAACCTGTTTCCAAAGTGGTGGCCAAGA...AAGGAAGTTACAATATGAAAGACAGCACCTCACTGCTCCTGCAGACACAAGGGC
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000099576.9
ENSMUST00000102547.10
ENSMUST00000161731.5
CDS-3UTR CCA 90 bp CCAACACAGCTCAACTATGAATTGCCATATTCATGGTCTTCTGATATTCTGCTCCAACTGGTGCTGGGGTaGAGCTGTGATCTTCTCTGG +
Preference number: 4 (lower is better)
Translates to: PTQLNYELPYSWSSDILLQLVLG*SCDLLW
Trigger: CCAGAGAAGATCACAGCTCCACCCCAGCACCAGTTG...GAGCAGAATATCAGAAGACCATGAATATGGCAATTCATAGTTGAGCTGTGTTGG
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000099576.9
CDS-3UTR TCA 90 bp CTTGTGTCTGCAGGAGCAGTGAGGTGCTGTCTTTCATATTGTAACTTCCTTCTGTGTCTCCGCCCTTGCTaGCTTTCCATCATTTTTAAG +
Preference number: 4 (lower is better)
Translates to: LVSAGAVRCCLSYCNFLLCLRPC*LSIIFK
Trigger: CTTAAAAATGATGGAAAGTCAGCAAGGGCGGAGACA...CAGAAGGAAGTTACAATATGAAAGACAGCACCTCACTGCTCCTGCAGACACAAG
46% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000081349.9
CDS-3UTR TCA 90 bp ACAATTACATATTCCTGTAGTGTTCCCAAACATAACTTTGCATTGTTCTTGTGGGCTGCGGGTGGGATTTaGGACCCTTCTTCTGCAGCC +
Preference number: 4 (lower is better)
Translates to: TITYSCSVPKHNFALFLWAAGGI*DPSSAA
Trigger: GGCTGCAGAAGAAGGGTCTCAAATCCCACCCGCAGC...CCACAAGAACAATGCAAAGTTATGTTTGGGAACACTACAGGAATATGTAATTGT
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000081349.9
CDS-3UTR TCA 90 bp CTTGTGTCTGCAGGAGCAGTGAGGTGCTGTCTTTCATATTGTAACTTCCTTCTGGGATGTGAAATGTCTTaGGTTCAAACTGAGCCTGCA +
Preference number: 4 (lower is better)
Translates to: LVSAGAVRCCLSYCNFLLGCEMS*VQTEPA
Trigger: TGCAGGCTCAGTTTGAACTCAAGACATTTCACATCC...CAGAAGGAAGTTACAATATGAAAGACAGCACCTCACTGCTCCTGCAGACACAAG
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000081349.9
ENSMUST00000099576.9
ENSMUST00000102547.10
ENSMUST00000161731.5
CDS-3UTR TCA 90 bp CTCTTGGGGATCACCATGTACCTCTTTTCTCATGACAAGGGTATATACTGGAAGTGCTCACCCCGGATGTaGAATGTCTTGAGTTCAAAC +
Preference number: 4 (lower is better)
Translates to: LLGITMYLFSHDKGIYWKCSPRM*NVLSSN
Trigger: GTTTGAACTCAAGACATTTCACATCCGGGGTGAGCA...CTTCCAGTATATACCCTTGTCATGAGAAAAGAGGTACATGGTGATCCCCAAGAG
46% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 3 transcripts:
ENSMUST00000081349.9
ENSMUST00000099576.9
ENSMUST00000102547.10
CDS-3UTR TCA 90 bp GTGGCCCTTGTGTCTGCAGGAGCAGTGAGGTGCTGTCTTTCATATTGTAACTTCTTCGATGTAAGGATGTaGTACCCTCAGAAAATACAG +
Preference number: 4 (lower is better)
Translates to: VALVSAGAVRCCLSYCNFFDVRM*YPQKIQ
Trigger: CTGTATTTTCTGAGGGTATCACATCCTTACATCGAA...GAAGTTACAATATGAAAGACAGCACCTCACTGCTCCTGCAGACACAAGGGCCAC
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000081349.9
ENSMUST00000099576.9
ENSMUST00000102547.10
ENSMUST00000161731.5
CDS-3UTR TCA 90 bp GTGGCCCTTGTGTCTGCAGGAGCAGTGAGGTGCTGTCTTTCATATTGTAACTTCTTCCAAAAGCCAGAATaGGAGCTAAGATATCCTTCA +
Preference number: 4 (lower is better)
Translates to: VALVSAGAVRCCLSYCNFFQKPE*ELRYPS
Trigger: TGAAGGATATCTTAGCTCTCATTCTGGCTTTTGGAA...GAAGTTACAATATGAAAGACAGCACCTCACTGCTCCTGCAGACACAAGGGCCAC
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000081349.9
ENSMUST00000099576.9
ENSMUST00000102547.10
ENSMUST00000161731.5
CDS-3UTR TCA 90 bp CCTTGCTTCCCTCTGTCTCAGAAGGTGGAGAGAAAACACTGCAAAGGTCTCATGTTCCAAAAGCCAGAATaGGAGCTAAGATATCCTTCA +
Preference number: 4 (lower is better)
Translates to: PCFPLSQKVERKHCKGLMFQKPE*ELRYPS
Trigger: TGAAGGATATCTTAGCTCTCATTCTGGCTTTTGGAA...CATGAGACCTTTGCAGTGTTTTCTCTCCACCTTCTGAGACAGAGGGAAGCAAGG
46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000099576.9
CDS-3UTR TCA 90 bp CTTGTGTCTGCAGGAGCAGTGAGGTGCTGTCTTTCATATTGTAACTTCCTTCTGTTGCTGACGGATGCCTaGGCCATTTTCAATCTTTCT +
Preference number: 4 (lower is better)
Translates to: LVSAGAVRCCLSYCNFLLLLTDA*AIFNLS
Trigger: AGAAAGATTGAAAATGGCTCAGGCATCCGTCAGCAA...CAGAAGGAAGTTACAATATGAAAGACAGCACCTCACTGCTCCTGCAGACACAAG
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000081349.9
ENSMUST00000099576.9
ENSMUST00000102547.10
ENSMUST00000161731.5
CDS-3UTR TCA 90 bp GCCCTTGTGTCTGCAGGAGCAGTGAGGTGCTGTCTTTCATATTGTAACTTCCTTTTGTGTGCGCTGGACTaGGGCGATGAATTATTAAAT +
Preference number: 4 (lower is better)
Translates to: ALVSAGAVRCCLSYCNFLLCALD*GDELLN
Trigger: ATTTAATAATTCATCGCCTCAGTCCAGCGCACACAA...AAGGAAGTTACAATATGAAAGACAGCACCTCACTGCTCCTGCAGACACAAGGGC
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000099576.9
ENSMUST00000102547.10
ENSMUST00000161731.5
CDS-3UTR TCA 90 bp GGATCACCATGTACCTCTTTTCTCATGACAAGGGTATATACTGGAAGGCTTAGACTTGAGTTCCAGTCCTaGCTTCCTTTGGGGATGAAC +
Preference number: 4 (lower is better)
Translates to: GSPCTSFLMTRVYTGRLRLEFQS*LPLGMN
Trigger: GTTCATCCCCAAAGGAAGTCAGGACTGGAACTCAAG...TCTAAGCCTTCCAGTATATACCCTTGTCATGAGAAAAGAGGTACATGGTGATCC
46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000102547.10
CDS-3UTR GCA 90 bp TGGCTTCTACAGACACCAGGCACACAGGTGGTGCACATATATACACGTAGGCAACGCTTTCCTAACTGTTaGTTGAGATTTTCAATGGCT +
Preference number: 4 (lower is better)
Translates to: WLLQTPGTQVVHIYTRRQRFPNC*LRFSMA
Trigger: AGCCATTGAAAATCTCAAGCAACAGTTAGGAAAGCG...TTGCCTACGTGTATATATGTGCACCACCTGTGTGCCTGGTGTCTGTAGAAGCCA
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000099576.9
CDS-3UTR GCA 90 bp CTTGTGTCTGCAGGAGCAGTGAGGTGCTGTCTTTCATATTGTAACTTCCTTCTGCAGTTTGCTGACGGATaGCTGAGCCATTTTCAATCT +
Preference number: 4 (lower is better)
Translates to: LVSAGAVRCCLSYCNFLLQFADG*LSHFQS
Trigger: AGATTGAAAATGGCTCAGGCATCCGTCAGCAAACTG...CAGAAGGAAGTTACAATATGAAAGACAGCACCTCACTGCTCCTGCAGACACAAG
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000081349.9
ENSMUST00000099576.9
ENSMUST00000102547.10
ENSMUST00000161731.5
CDS-3UTR CCA 90 bp ACAATTACATATTCCTGTAGTGTTCCCAAACATAACTTTGCATTGTTCTTGTGGGGACGTGGGCATCTCTaGGGCTCTTGTGGCTCTCCT +
Preference number: 4 (lower is better)
Translates to: TITYSCSVPKHNFALFLWGRGHL*GSCGSP
Trigger: AGGAGAGCCACAAGAGCCCCAGAGATGCCCACGTCC...CCACAAGAACAATGCAAAGTTATGTTTGGGAACACTACAGGAATATGTAATTGT
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000081349.9
CDS-3UTR CCA 90 bp CTTGTGTCTGCAGGAGCAGTGAGGTGCTGTCTTTCATATTGTAACTTCCTTCTGTGTAGGATAGCAGCCTaGTATTCTGCTTCAGTGTAC +
Preference number: 4 (lower is better)
Translates to: LVSAGAVRCCLSYCNFLLCRIAA*YSASVY
Trigger: GTACACTGAAGCAGAATACCAGGCTGCTATCCTACA...CAGAAGGAAGTTACAATATGAAAGACAGCACCTCACTGCTCCTGCAGACACAAG
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000081349.9
ENSMUST00000099576.9
ENSMUST00000102547.10
CDS-3UTR CCA 90 bp CTTAAGGTATCTGGCAAGTTCAAAGGTCCTGGAAAGTTGCTGAGGCAAGAGGTGGTCTCTCTGTCTGTCTaGATGCACACATTTCTGAAA +
Preference number: 4 (lower is better)
Translates to: LKVSGKFKGPGKLLRQEVVSLSV*MHTFLK
Trigger: TTTCAGAAATGTGTGCATCCAGACAGACAGAGAGAC...CACCTCTTGCCTCAGCAACTTTCCAGGACCTTTGAACTTGCCAGATACCTTAAG
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000099576.9
CDS-3UTR CCA 90 bp CTTGTGTCTGCAGGAGCAGTGAGGTGCTGTCTTTCATATTGTAACTTCCTTCTGCTATCTGGCTGCTTCTaGTTGCTTTGCTTTCAGCAT +
Preference number: 4 (lower is better)
Translates to: LVSAGAVRCCLSYCNFLLLSGCF*LLCFQH
Trigger: ATGCTGAAAGCAAAGCAACCAGAAGCAGCCAGATAG...CAGAAGGAAGTTACAATATGAAAGACAGCACCTCACTGCTCCTGCAGACACAAG
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000081349.9
ENSMUST00000099576.9
ENSMUST00000102547.10
ENSMUST00000161731.5
CDS-3UTR CCA 90 bp GCATTGTTCTTGTGGATTGACAAGAGACTTCCCAAAGAAGGCACAGGGGACTTTTTCTTGGGTACTATCTaGCTGCTTCTGGTTGCTTTG +
Preference number: 4 (lower is better)
Translates to: ALFLWIDKRLPKEGTGDFFLGTI*LLLVAL
Trigger: CAAAGCAACCAGAAGCAGCCAGATAGTACCCAAGAA...AAAGTCCCCTGTGCCTTCTTTGGGAAGTCTCTTGTCAATCCACAAGAACAATGC
46% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000081349.9
ENSMUST00000099576.9
ENSMUST00000102547.10
CDS-3UTR CCA 90 bp CCGGTGGCCCTTGTGTCTGCAGGAGCAGTGAGGTGCTGTCTTTCATATTGTAACTCAAGTCTTCTTCTTTaGATGTCTCATAGTACTTTC +
Preference number: 4 (lower is better)
Translates to: PVALVSAGAVRCCLSYCNSSLLL*MSHSTF
Trigger: GAAAGTACTATGAGACATCCAAAGAAGAAGACTTGA...GTTACAATATGAAAGACAGCACCTCACTGCTCCTGCAGACACAAGGGCCACCGG
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000081349.9
ENSMUST00000099576.9
ENSMUST00000102547.10
ENSMUST00000161731.5
CDS-3UTR CCA 90 bp CTTGTGTCTGCAGGAGCAGTGAGGTGCTGTCTTTCATATTGTAACTTCCTTCTGCTGAAGATTATGCACTaGGCACGTTCGGCAAAATTG +
Preference number: 4 (lower is better)
Translates to: LVSAGAVRCCLSYCNFLLLKIMH*ARSAKL
Trigger: CAATTTTGCCGAACGTGCCCAGTGCATAATCTTCAG...CAGAAGGAAGTTACAATATGAAAGACAGCACCTCACTGCTCCTGCAGACACAAG
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000081349.9
ENSMUST00000099576.9
ENSMUST00000102547.10
ENSMUST00000161731.5
CDS-3UTR CCA 90 bp GGATCACCATGTACCTCTTTTCTCATGACAAGGGTATATACTGGAAGGCTTAGACAGGAAGAAATCCTGTaGTTCAGGCAGCGGGAAAAC +
Preference number: 4 (lower is better)
Translates to: GSPCTSFLMTRVYTGRLRQEEIL*FRQREN
Trigger: GTTTTCCCGCTGCCTGAACCACAGGATTTCTTCCTG...TCTAAGCCTTCCAGTATATACCCTTGTCATGAGAAAAGAGGTACATGGTGATCC
46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000081349.9
ENSMUST00000099576.9
ENSMUST00000102547.10
CDS-3UTR CCA 90 bp TGGCTTCTACAGACACCAGGCACACAGGTGGTGCACATATATACACGTAGGCAACTTCTCTCCAGTCTTTaGCTTCATTCCAAAATATCC +
Preference number: 4 (lower is better)
Translates to: WLLQTPGTQVVHIYTRRQLLSSL*LHSKIS
Trigger: GGATATTTTGGAATGAAGCCAAAGACTGGAGAGAAG...TTGCCTACGTGTATATATGTGCACCACCTGTGTGCCTGGTGTCTGTAGAAGCCA
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000099576.9
CDS-3UTR CCA 90 bp GTGGCCCTTGTGTCTGCAGGAGCAGTGAGGTGCTGTCTTTCATATTGTAACTTCCTTCTCTCCAGTCTTTaGCTTCATTCCAAAATATCC +
Preference number: 4 (lower is better)
Translates to: VALVSAGAVRCCLSYCNFLLSSL*LHSKIS
Trigger: GGATATTTTGGAATGAAGCCAAAGACTGGAGAGAAG...GAAGTTACAATATGAAAGACAGCACCTCACTGCTCCTGCAGACACAAGGGCCAC
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000081349.9
ENSMUST00000099576.9
ENSMUST00000102547.10
ENSMUST00000161731.5
CDS-3UTR CCA 90 bp AGACTTCCCAAAGAAGGCACAGGGGACTTTCTGCAGATGGCCTCAGAAGGAGATTATGGAAAGCGTTATTaGATCTGTCTAGAGTTACAG +
Preference number: 4 (lower is better)
Translates to: RLPKEGTGDFLQMASEGDYGKRY*ICLELQ
Trigger: CTGTAACTCTAGACAGATCCAATAACGCTTTCCATA...ATCTCCTTCTGAGGCCATCTGCAGAAAGTCCCCTGTGCCTTCTTTGGGAAGTCT
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000099576.9
ENSMUST00000102547.10
CDS-3UTR CCA 90 bp GCCCTTGTGTCTGCAGGAGCAGTGAGGTGCTGTCTTTCATATTGTAACTTCCTTGAGGAAGTCAGCTTTTaGGATAAACTCAGTTTGGGT +
Preference number: 4 (lower is better)
Translates to: ALVSAGAVRCCLSYCNFLEEVSF*DKLSLG
Trigger: ACCCAAACTGAGTTTATCCCAAAAGCTGACTTCCTC...AAGGAAGTTACAATATGAAAGACAGCACCTCACTGCTCCTGCAGACACAAGGGC
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000099576.9
ENSMUST00000102547.10
ENSMUST00000161731.5
CDS-3UTR CCA 90 bp CCAACACAGCTCAACTATGAATTGCCATATTCATGGTCTTCTGATATTCTGCTCTTCATGGAGCAGAAATaGACAGGGTGGTCCGGCTCT +
Preference number: 4 (lower is better)
Translates to: PTQLNYELPYSWSSDILLFMEQK*TGWSGS
Trigger: AGAGCCGGACCACCCTGTCCATTTCTGCTCCATGAA...GAGCAGAATATCAGAAGACCATGAATATGGCAATTCATAGTTGAGCTGTGTTGG
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000099576.9
3UTR CAA 72 bp TGGGATGTTCACTTCTGCCCAAGAATACTGACTCATTaGTGCTTTGGCAGCCCAGTGATATCACGTTTCACA +
Preference number: 4 (lower is better)
Translates to: WDVHFCPRILTH*CFGSPVISRFT
Trigger: TGTGAAACGTGATATCACTGGGCTGCCAAAGCACAAATGAGTCAGTATTCTTGGGCAGAAGTGAACATCCCA
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000099576.9
CDS-3UTR TCA 90 bp ACAATTACATATTCCTGTAGTGTTCCCAAACATAACTTTGCATTGTTCTTGTGGTGCCTGTGGCTGATCTaGGCCTTTGCTGGGATCACC +
Preference number: 4 (lower is better)
Translates to: TITYSCSVPKHNFALFLWCLWLI*AFAGIT
Trigger: GGTGATCCCAGCAAAGGCTCAGATCAGCCACAGGCA...CCACAAGAACAATGCAAAGTTATGTTTGGGAACACTACAGGAATATGTAATTGT
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000081349.9
CDS-3UTR TCA 90 bp GGATCACCATGTACCTCTTTTCTCATGACAAGGGTATATACTGGAAGGCTTAGATGCTCACCCCGGATGTaGAATGTCTTGAGTTCAAAC +
Preference number: 4 (lower is better)
Translates to: GSPCTSFLMTRVYTGRLRCSPRM*NVLSSN
Trigger: GTTTGAACTCAAGACATTTCACATCCGGGGTGAGCA...TCTAAGCCTTCCAGTATATACCCTTGTCATGAGAAAAGAGGTACATGGTGATCC
44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000081349.9
ENSMUST00000099576.9
ENSMUST00000102547.10
CDS-3UTR TCA 90 bp CTTGTGTCTGCAGGAGCAGTGAGGTGCTGTCTTTCATATTGTAACTTCCTTCTGAAGATTCCCACAGTTTaGGATCGCTTTCCATCCAAT +
Preference number: 4 (lower is better)
Translates to: LVSAGAVRCCLSYCNFLLKIPTV*DRFPSN
Trigger: ATTGGATGGAAAGCGATCTCAAACTGTGGGAATCTT...CAGAAGGAAGTTACAATATGAAAGACAGCACCTCACTGCTCCTGCAGACACAAG
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000081349.9
ENSMUST00000099576.9
ENSMUST00000102547.10
ENSMUST00000161731.5
CDS-3UTR TCA 90 bp GCAGCATCCCTCAAGCCAACACAGCTCAACTATGAATTGCCATATTCATGGTCTAAGATTCCCACAGTTTaGGATCGCTTTCCATCCAAT +
Preference number: 4 (lower is better)
Translates to: AASLKPTQLNYELPYSWSKIPTV*DRFPSN
Trigger: ATTGGATGGAAAGCGATCTCAAACTGTGGGAATCTT...AGACCATGAATATGGCAATTCATAGTTGAGCTGTGTTGGCTTGAGGGATGCTGC
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000099576.9
CDS-3UTR TCA 90 bp GCCCTTGTGTCTGCAGGAGCAGTGAGGTGCTGTCTTTCATATTGTAACTTCCTTTTCGATGTAAGGATGTaGTACCCTCAGAAAATACAG +
Preference number: 4 (lower is better)
Translates to: ALVSAGAVRCCLSYCNFLFDVRM*YPQKIQ
Trigger: CTGTATTTTCTGAGGGTATCACATCCTTACATCGAA...AAGGAAGTTACAATATGAAAGACAGCACCTCACTGCTCCTGCAGACACAAGGGC
44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000081349.9
ENSMUST00000099576.9
ENSMUST00000102547.10
ENSMUST00000161731.5
CDS-3UTR TCA 90 bp CTTGTGTCTGCAGGAGCAGTGAGGTGCTGTCTTTCATATTGTAACTTCCTTCTGTTGTGGGAGTCTGTTTaGAAAATATGTCGCCTGGAT +
Preference number: 4 (lower is better)
Translates to: LVSAGAVRCCLSYCNFLLLWESV*KICRLD
Trigger: ATCCAGGCGACATATTTTTCAAACAGACTCCCACAA...CAGAAGGAAGTTACAATATGAAAGACAGCACCTCACTGCTCCTGCAGACACAAG
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000099576.9
ENSMUST00000102547.10
ENSMUST00000161731.5
CDS-3UTR TCA 90 bp GGATCACCATGTACCTCTTTTCTCATGACAAGGGTATATACTGGAAGGCTTAGATCTCCTTCTCTGCTGTaGGCTTGTATAGCTCTGTCA +
Preference number: 4 (lower is better)
Translates to: GSPCTSFLMTRVYTGRLRSPSLL*ACIALS
Trigger: TGACAGAGCTATACAAGCTCACAGCAGAGAAGGAGA...TCTAAGCCTTCCAGTATATACCCTTGTCATGAGAAAAGAGGTACATGGTGATCC
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000099576.9
ENSMUST00000102547.10
CDS-3UTR TCA 90 bp ATCTCAATAGCTGATGCTCACTTCCAGCATCAAAACTTCTTCTCCAGATTAAGGAGTGGCAAGGATTACTaGCAGCTCCTGCAACTTTCC +
Preference number: 4 (lower is better)
Translates to: ISIADAHFQHQNFFSRLRSGKDY*QLLQLS
Trigger: GGAAAGTTGCAGGAGCTGTCAGTAATCCTTGCCACT...CCTTAATCTGGAGAAGAAGTTTTGATGCTGGAAGTGAGCATCAGCTATTGAGAT
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000099576.9
CDS-3UTR TCA 90 bp GCCCTTGTGTCTGCAGGAGCAGTGAGGTGCTGTCTTTCATATTGTAACTTCCTTTGTGGAAGTATAAGCTaGATAAATCCTTTCCTCTGC +
Preference number: 4 (lower is better)
Translates to: ALVSAGAVRCCLSYCNFLCGSIS*INPFLC
Trigger: GCAGAGGAAAGGATTTATTCAGCTTATACTTCCACA...AAGGAAGTTACAATATGAAAGACAGCACCTCACTGCTCCTGCAGACACAAGGGC
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000102547.10
CDS-3UTR GCA 90 bp ATGGCCTCAGAAGGAGATGAGCAAATGTCCCTAACTAGTCTTTCAGGAACTCCCCGCTTTCCTAACTGTTaGTTGAGATTTTCAATGGCT +
Preference number: 4 (lower is better)
Translates to: MASEGDEQMSLTSLSGTPRFPNC*LRFSMA
Trigger: AGCCATTGAAAATCTCAAGCAACAGTTAGGAAAGCG...GGGAGTTCCTGAAAGACTAGTTAGGGACATTTGCTCATCTCCTTCTGAGGCCAT
44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000081349.9
ENSMUST00000099576.9
ENSMUST00000102547.10
ENSMUST00000161731.5
CDS-3UTR GCA 90 bp GCCCTTGTGTCTGCAGGAGCAGTGAGGTGCTGTCTTTCATATTGTAACTTCCTTCATCATCTGTGGAAATaGACACATCTCTCATCTCTT +
Preference number: 4 (lower is better)
Translates to: ALVSAGAVRCCLSYCNFLHHLWK*THLSSL
Trigger: AAGAGATGAGAGATGTGTGCATTTCCACAGATGATG...AAGGAAGTTACAATATGAAAGACAGCACCTCACTGCTCCTGCAGACACAAGGGC
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000081349.9
ENSMUST00000099576.9
ENSMUST00000102547.10
ENSMUST00000161731.5
CDS-3UTR GCA 90 bp CTCTTGGGGATCACCATGTACCTCTTTTCTCATGACAAGGGTATATACTGGAAGTGGGTACTATCTGGCTaGTTCTGGTTGCTTTGCTTT +
Preference number: 4 (lower is better)
Translates to: LLGITMYLFSHDKGIYWKWVLSG*FWLLCF
Trigger: AAAGCAAAGCAACCAGAAGCAGCCAGATAGTACCCA...CTTCCAGTATATACCCTTGTCATGAGAAAAGAGGTACATGGTGATCCCCAAGAG
44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000081349.9
ENSMUST00000099576.9
ENSMUST00000102547.10
CDS-3UTR GCA 90 bp TGGCTTCTACAGACACCAGGCACACAGGTGGTGCACATATATACACGTAGGCAAATCTGGGCTAACTCATaGAAAAATTGTTCAGGTTTG +
Preference number: 4 (lower is better)
Translates to: WLLQTPGTQVVHIYTRRQIWANS*KNCSGL
Trigger: CAAACCTGAACAATTTTTGCATGAGTTAGCCCAGAT...TTGCCTACGTGTATATATGTGCACCACCTGTGTGCCTGGTGTCTGTAGAAGCCA
44% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000099576.9
CDS-3UTR GCA 90 bp ATGAATTGCCATATTCATGGTCTTCTGATATTCTGCTCACTTATAACGTCCCCTTTGTCCTTGAAAGGCTaGAGGTACTCCCTTGGGGAC +
Preference number: 4 (lower is better)
Translates to: MNCHIHGLLIFCSLITSPLSLKG*RYSLGD
Trigger: GTCCCCAAGGGAGTACCTGCAGCCTTTCAAGGACAA...AGGGGACGTTATAAGTGAGCAGAATATCAGAAGACCATGAATATGGCAATTCAT
44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000099576.9
CDS-3UTR CCA 90 bp GCATTGTTCTTGTGGATTGACAAGAGACTTCCCAAAGAAGGCACAGGGGACTTTGTCTCTCTGTCTGTCTaGATGCACACATTTCTGAAA +
Preference number: 4 (lower is better)
Translates to: ALFLWIDKRLPKEGTGDFVSLSV*MHTFLK
Trigger: TTTCAGAAATGTGTGCATCCAGACAGACAGAGAGAC...AAAGTCCCCTGTGCCTTCTTTGGGAAGTCTCTTGTCAATCCACAAGAACAATGC
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000081349.9
ENSMUST00000099576.9
ENSMUST00000102547.10
CDS-3UTR CCA 90 bp CTTGTGTCTGCAGGAGCAGTGAGGTGCTGTCTTTCATATTGTAACTTCCTTCTGGTCTCTCTGTCTGTCTaGATGCACACATTTCTGAAA +
Preference number: 4 (lower is better)
Translates to: LVSAGAVRCCLSYCNFLLVSLSV*MHTFLK
Trigger: TTTCAGAAATGTGTGCATCCAGACAGACAGAGAGAC...CAGAAGGAAGTTACAATATGAAAGACAGCACCTCACTGCTCCTGCAGACACAAG
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000081349.9
ENSMUST00000099576.9
ENSMUST00000102547.10
ENSMUST00000161731.5
CDS-3UTR CCA 90 bp ACAATTACATATTCCTGTAGTGTTCCCAAACATAACTTTGCATTGTTCTTGTGGTGGAGGAGGTGGTGGTaGTGGTGGTCCATCACTTGG +
Preference number: 4 (lower is better)
Translates to: TITYSCSVPKHNFALFLWWRRWW*WWSITW
Trigger: CCAAGTGATGGACCACCACCACCACCACCTCCTCCA...CCACAAGAACAATGCAAAGTTATGTTTGGGAACACTACAGGAATATGTAATTGT
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000081349.9
ENSMUST00000099576.9
ENSMUST00000102547.10
CDS-3UTR CCA 90 bp ACAATTACATATTCCTGTAGTGTTCCCAAACATAACTTTGCATTGTTCTTGTGGCTGCAGGTACTCCCTTaGGGACTCCTTGCACACCAG +
Preference number: 4 (lower is better)
Translates to: TITYSCSVPKHNFALFLWLQVLP*GLLAHQ
Trigger: CTGGTGTGCAAGGAGTCCCCAAGGGAGTACCTGCAG...CCACAAGAACAATGCAAAGTTATGTTTGGGAACACTACAGGAATATGTAATTGT
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000081349.9
ENSMUST00000099576.9
ENSMUST00000102547.10
CDS-3UTR CCA 90 bp ACAATTACATATTCCTGTAGTGTTCCCAAACATAACTTTGCATTGTTCTTGTGGCCTGAGGATGTTGGCTaGGCAGCTCTCTCTTCTCCG +
Preference number: 4 (lower is better)
Translates to: TITYSCSVPKHNFALFLWPEDVG*AALSSP
Trigger: CGGAGAAGAGAGAGCTGCCCAGCCAACATCCTCAGG...CCACAAGAACAATGCAAAGTTATGTTTGGGAACACTACAGGAATATGTAATTGT
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000099576.9
ENSMUST00000102547.10
CDS-3UTR CCA 90 bp ACAATTACATATTCCTGTAGTGTTCCCAAACATAACTTTGCATTGTTCTTGTGGCATCTCCTACCTCAGTaGGGCTGCTGTCAGGGGACA +
Preference number: 4 (lower is better)
Translates to: TITYSCSVPKHNFALFLWHLLPQ*GCCQGT
Trigger: TGTCCCCTGACAGCAGCCCCACTGAGGTAGGAGATG...CCACAAGAACAATGCAAAGTTATGTTTGGGAACACTACAGGAATATGTAATTGT
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000099576.9
ENSMUST00000102547.10
CDS-3UTR CCA 90 bp ATGAATTGCCATATTCATGGTCTTCTGATATTCTGCTCACTTATAACGTCCCCTAGACACATTTGGTTGTaGGGGCTCCTGCTGGTGAGA +
Preference number: 4 (lower is better)
Translates to: MNCHIHGLLIFCSLITSPRHIWL*GLLLVR
Trigger: TCTCACCAGCAGGAGCCCCCACAACCAAATGTGTCT...AGGGGACGTTATAAGTGAGCAGAATATCAGAAGACCATGAATATGGCAATTCAT
44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000099576.9
CDS-3UTR CCA 90 bp ATCTCAATAGCTGATGCTCACTTCCAGCATCAAAACTTCTTCTCCAGATTAAGGAGCCCAGCCTTCCTTTaGCTTCGAGTTTCTGGGAAA +
Preference number: 4 (lower is better)
Translates to: ISIADAHFQHQNFFSRLRSPAFL*LRVSGK
Trigger: TTTCCCAGAAACTCGAAGCCAAAGGAAGGCTGGGCT...CCTTAATCTGGAGAAGAAGTTTTGATGCTGGAAGTGAGCATCAGCTATTGAGAT
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000099576.9
3UTR CAA 72 bp GTGTTCCCAAACATAACTTTGCATTGTTCTTGTGGATaGACAAGAGACTTCCCAAAGAAGGCACAGGGGACT +
Preference number: 4 (lower is better)
Translates to: VFPNITLHCSCG*TRDFPKKAQGT
Trigger: AGTCCCCTGTGCCTTCTTTGGGAAGTCTCTTGTCAATCCACAAGAACAATGCAAAGTTATGTTTGGGAACAC
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000081349.9
ENSMUST00000099576.9
ENSMUST00000102547.10
3UTR CAA 72 bp GCAGCATCCCTCAAGCCAACACAGCTCAACTATGAATaGCCATATTCATGGTCTTCTGATATTCTGCTCACT +
Preference number: 4 (lower is better)
Translates to: AASLKPTQLNYE*PYSWSSDILLT
Trigger: AGTGAGCAGAATATCAGAAGACCATGAATATGGCAATTCATAGTTGAGCTGTGTTGGCTTGAGGGATGCTGC
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000099576.9
CDS-3UTR TCA 90 bp ATGGCCTCAGAAGGAGATGAGCAAATGTCCCTAACTAGTCTTTCAGGAACTCCCTTCCTAACTGTTGCTTaGGATTTTCAATGGCTTCTT +
Preference number: 4 (lower is better)
Translates to: MASEGDEQMSLTSLSGTPFLTVA*DFQWLL
Trigger: AAGAAGCCATTGAAAATCTCAAGCAACAGTTAGGAA...GGGAGTTCCTGAAAGACTAGTTAGGGACATTTGCTCATCTCCTTCTGAGGCCAT
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000081349.9
ENSMUST00000099576.9
ENSMUST00000102547.10
ENSMUST00000161731.5
CDS-3UTR TCA 90 bp AAACCACGTGACAATAACTTTCCTTCAAACCACAGAAAGACAGCTAGCACCTGTGCTTCCAAATGGTCTTaGAGTCACTGCAGAACTCAA +
Preference number: 4 (lower is better)
Translates to: KPRDNNFPSNHRKTASTCASKWS*SHCRTQ
Trigger: TTGAGTTCTGCAGTGACTTCAAGACCATTTGGAAGC...ACAGGTGCTAGCTGTCTTTCTGTGGTTTGAAGGAAAGTTATTGTCACGTGGTTT
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000099576.9
CDS-3UTR TCA 90 bp CCAACACAGCTCAACTATGAATTGCCATATTCATGGTCTTCTGATATTCTGCTCTCTCCTTCTCTGCTGTaGGCTTGTATAGCTCTGTCA +
Preference number: 4 (lower is better)
Translates to: PTQLNYELPYSWSSDILLSPSLL*ACIALS
Trigger: TGACAGAGCTATACAAGCTCACAGCAGAGAAGGAGA...GAGCAGAATATCAGAAGACCATGAATATGGCAATTCATAGTTGAGCTGTGTTGG
43% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000099576.9
CDS-3UTR GCA 90 bp GCATTGTTCTTGTGGATTGACAAGAGACTTCCCAAAGAAGGCACAGGGGACTTTAGTGACTCCTTCTCATaGTTCATCTTTCGCTTAAGA +
Preference number: 4 (lower is better)
Translates to: ALFLWIDKRLPKEGTGDFSDSFS*FIFRLR
Trigger: TCTTAAGCGAAAGATGAAGCATGAGAAGGAGTCACT...AAAGTCCCCTGTGCCTTCTTTGGGAAGTCTCTTGTCAATCCACAAGAACAATGC
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000081349.9
CDS-3UTR GCA 90 bp CTTGTGTCTGCAGGAGCAGTGAGGTGCTGTCTTTCATATTGTAACTTCCTTCTGCATCATCTGTGGAAATaGACACATCTCTCATCTCTT +
Preference number: 4 (lower is better)
Translates to: LVSAGAVRCCLSYCNFLLHHLWK*THLSSL
Trigger: AAGAGATGAGAGATGTGTGCATTTCCACAGATGATG...CAGAAGGAAGTTACAATATGAAAGACAGCACCTCACTGCTCCTGCAGACACAAG
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000081349.9
ENSMUST00000099576.9
ENSMUST00000102547.10
ENSMUST00000161731.5
CDS-3UTR GCA 90 bp AAACCACGTGACAATAACTTTCCTTCAAACCACAGAAAGACAGCTAGCACCTGTTGGGTACTATCTGGCTaGTTCTGGTTGCTTTGCTTT +
Preference number: 4 (lower is better)
Translates to: KPRDNNFPSNHRKTASTCWVLSG*FWLLCF
Trigger: AAAGCAAAGCAACCAGAAGCAGCCAGATAGTACCCA...ACAGGTGCTAGCTGTCTTTCTGTGGTTTGAAGGAAAGTTATTGTCACGTGGTTT
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000099576.9
CDS-3UTR CCA 90 bp GGATCACCATGTACCTCTTTTCTCATGACAAGGGTATATACTGGAAGGCTTAGACTATCTGGCTGCTTCTaGTTGCTTTGCTTTCAGCAT +
Preference number: 4 (lower is better)
Translates to: GSPCTSFLMTRVYTGRLRLSGCF*LLCFQH
Trigger: ATGCTGAAAGCAAAGCAACCAGAAGCAGCCAGATAG...TCTAAGCCTTCCAGTATATACCCTTGTCATGAGAAAAGAGGTACATGGTGATCC
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000081349.9
ENSMUST00000099576.9
ENSMUST00000102547.10
CDS-3UTR CCA 90 bp ATCTCAATAGCTGATGCTCACTTCCAGCATCAAAACTTCTTCTCCAGATTAAGGTTTGAGGGAGAGAGCTaGGTTAAGGAGATAGTCAGC +
Preference number: 4 (lower is better)
Translates to: ISIADAHFQHQNFFSRLRFEGES*VKEIVS
Trigger: GCTGACTATCTCCTTAACCCAGCTCTCTCCCTCAAA...CCTTAATCTGGAGAAGAAGTTTTGATGCTGGAAGTGAGCATCAGCTATTGAGAT
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000099576.9
CDS-3UTR CCA 90 bp CTTGTGTCTGCAGGAGCAGTGAGGTGCTGTCTTTCATATTGTAACTTCCTTCTGGTTGGTGCGGCGTCTTaGCTTTTATCATTTATTTGT +
Preference number: 4 (lower is better)
Translates to: LVSAGAVRCCLSYCNFLLVGAAS*LLSFIC
Trigger: ACAAATAAATGATAAAAGCCAAGACGCCGCACCAAC...CAGAAGGAAGTTACAATATGAAAGACAGCACCTCACTGCTCCTGCAGACACAAG
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000081349.9
ENSMUST00000099576.9
ENSMUST00000102547.10
ENSMUST00000161731.5
CDS-3UTR CCA 90 bp ATGGCCTCAGAAGGAGATGAGCAAATGTCCCTAACTAGTCTTTCAGGAACTCCCGCAAAATTGGGAATCTaGGCTAACTCATGCAAAAAT +
Preference number: 4 (lower is better)
Translates to: MASEGDEQMSLTSLSGTPAKLGI*ANSCKN
Trigger: ATTTTTGCATGAGTTAGCCCAGATTCCCAATTTTGC...GGGAGTTCCTGAAAGACTAGTTAGGGACATTTGCTCATCTCCTTCTGAGGCCAT
43% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 4 transcripts:
ENSMUST00000081349.9
ENSMUST00000099576.9
ENSMUST00000102547.10
ENSMUST00000161731.5
CDS-3UTR CCA 90 bp ATGGCCTCAGAAGGAGATGAGCAAATGTCCCTAACTAGTCTTTCAGGAACTCCCTCTGACTTCCCCTTTTaGAAGATAGAAGCTGATATA +
Preference number: 4 (lower is better)
Translates to: MASEGDEQMSLTSLSGTPSDFPF*KIEADI
Trigger: TATATCAGCTTCTATCTTCCAAAAGGGGAAGTCAGA...GGGAGTTCCTGAAAGACTAGTTAGGGACATTTGCTCATCTCCTTCTGAGGCCAT
43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000099576.9
ENSMUST00000102547.10
ENSMUST00000161731.5
3UTR CAA 72 bp CACATCCTTAATGTGCTAGAGCCTGTTTATTCCCTGTaGAATCCTTGGGATGTTCACTTCTGCCCAAGAATA +
Preference number: 4 (lower is better)
Translates to: HILNVLEPVYSL*NPWDVHFCPRI
Trigger: TATTCTTGGGCAGAAGTGAACATCCCAAGGATTCAACAGGGAATAAACAGGCTCTAGCACATTAAGGATGTG
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000099576.9
CDS-3UTR TCA 90 bp ACAATTACATATTCCTGTAGTGTTCCCAAACATAACTTTGCATTGTTCTTGTGGTGTCCCAGAGACTTCTaGACACGCTGGGTCAACTTG +
Preference number: 4 (lower is better)
Translates to: TITYSCSVPKHNFALFLWCPRDF*TRWVNL
Trigger: CAAGTTGACCCAGCGTGTTCAGAAGTCTCTGGGACA...CCACAAGAACAATGCAAAGTTATGTTTGGGAACACTACAGGAATATGTAATTGT
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000081349.9
CDS-3UTR TCA 90 bp GCATTGTTCTTGTGGATTGACAAGAGACTTCCCAAAGAAGGCACAGGGGACTTTTTCCTAACTGTTGCTTaGGATTTTCAATGGCTTCTT +
Preference number: 4 (lower is better)
Translates to: ALFLWIDKRLPKEGTGDFFLTVA*DFQWLL
Trigger: AAGAAGCCATTGAAAATCTCAAGCAACAGTTAGGAA...AAAGTCCCCTGTGCCTTCTTTGGGAAGTCTCTTGTCAATCCACAAGAACAATGC
42% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 3 transcripts:
ENSMUST00000081349.9
ENSMUST00000099576.9
ENSMUST00000102547.10
CDS-3UTR TCA 90 bp GGATCACCATGTACCTCTTTTCTCATGACAAGGGTATATACTGGAAGGCTTAGATTGTGTGCGCTGGACTaGGGCGATGAATTATTAAAT +
Preference number: 4 (lower is better)
Translates to: GSPCTSFLMTRVYTGRLRLCALD*GDELLN
Trigger: ATTTAATAATTCATCGCCTCAGTCCAGCGCACACAA...TCTAAGCCTTCCAGTATATACCCTTGTCATGAGAAAAGAGGTACATGGTGATCC
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000099576.9
ENSMUST00000102547.10
CDS-3UTR GCA 90 bp CTTGTGTCTGCAGGAGCAGTGAGGTGCTGTCTTTCATATTGTAACTTCCTTCTGATCTGGGCTAACTCATaGAAAAATTGTTCAGGTTTG +
Preference number: 4 (lower is better)
Translates to: LVSAGAVRCCLSYCNFLLIWANS*KNCSGL
Trigger: CAAACCTGAACAATTTTTGCATGAGTTAGCCCAGAT...CAGAAGGAAGTTACAATATGAAAGACAGCACCTCACTGCTCCTGCAGACACAAG
42% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 4 transcripts:
ENSMUST00000081349.9
ENSMUST00000099576.9
ENSMUST00000102547.10
ENSMUST00000161731.5
CDS-3UTR CCA 90 bp ACAATTACATATTCCTGTAGTGTTCCCAAACATAACTTTGCATTGTTCTTGTGGAGTCAGAATCACTGGTaGTGTGAACCAGGGTCCCAC +
Preference number: 4 (lower is better)
Translates to: TITYSCSVPKHNFALFLWSQNHW*CEPGSH
Trigger: GTGGGACCCTGGTTCACACCACCAGTGATTCTGACT...CCACAAGAACAATGCAAAGTTATGTTTGGGAACACTACAGGAATATGTAATTGT
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000081349.9
CDS-3UTR CCA 90 bp ACAATTACATATTCCTGTAGTGTTCCCAAACATAACTTTGCATTGTTCTTGTGGAGACACATTTGGTTGTaGGGGCTCCTGCTGGTGAGA +
Preference number: 4 (lower is better)
Translates to: TITYSCSVPKHNFALFLWRHIWL*GLLLVR
Trigger: TCTCACCAGCAGGAGCCCCCACAACCAAATGTGTCT...CCACAAGAACAATGCAAAGTTATGTTTGGGAACACTACAGGAATATGTAATTGT
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000099576.9
ENSMUST00000102547.10
CDS-3UTR CCA 90 bp ACAATTACATATTCCTGTAGTGTTCCCAAACATAACTTTGCATTGTTCTTGTGGTTCATGGAGCAGAAATaGACAGGGTGGTCCGGCTCT +
Preference number: 4 (lower is better)
Translates to: TITYSCSVPKHNFALFLWFMEQK*TGWSGS
Trigger: AGAGCCGGACCACCCTGTCCATTTCTGCTCCATGAA...CCACAAGAACAATGCAAAGTTATGTTTGGGAACACTACAGGAATATGTAATTGT
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000099576.9
ENSMUST00000102547.10
3UTR CAA 72 bp ACCCAGTCAGTGAGCTACCATGTTAATGTCTCCATGTaGACAAAGAACCTGTTAAGTATTCAAACTCCTCCA +
Preference number: 4 (lower is better)
Translates to: TQSVSYHVNVSM*TKNLLSIQTPP
Trigger: TGGAGGAGTTTGAATACTTAACAGGTTCTTTGTCAACATGGAGACATTAACATGGTAGCTCACTGACTGGGT
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000099576.9
CDS-3UTR TCA 90 bp ACAATTACATATTCCTGTAGTGTTCCCAAACATAACTTTGCATTGTTCTTGTGGGGAGGTCTTCAAACTTaGCTTGAGAGGCCAGGAAGA +
Preference number: 4 (lower is better)
Translates to: TITYSCSVPKHNFALFLWGGLQT*LERPGR
Trigger: TCTTCCTGGCCTCTCAAGTCAAGTTTGAAGACCTCC...CCACAAGAACAATGCAAAGTTATGTTTGGGAACACTACAGGAATATGTAATTGT
41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000081349.9
ENSMUST00000099576.9
ENSMUST00000102547.10
CDS-3UTR CCA 90 bp CTTGTGTCTGCAGGAGCAGTGAGGTGCTGTCTTTCATATTGTAACTTCCTTCTGTCAAGTCTTCTTCTTTaGATGTCTCATAGTACTTTC +
Preference number: 4 (lower is better)
Translates to: LVSAGAVRCCLSYCNFLLSSLLL*MSHSTF
Trigger: GAAAGTACTATGAGACATCCAAAGAAGAAGACTTGA...CAGAAGGAAGTTACAATATGAAAGACAGCACCTCACTGCTCCTGCAGACACAAG
41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000081349.9
ENSMUST00000099576.9
ENSMUST00000102547.10
ENSMUST00000161731.5
CDS-3UTR CCA 90 bp CTCTTGGGGATCACCATGTACCTCTTTTCTCATGACAAGGGTATATACTGGAAGTCTGACTTCCCCTTTTaGAAGATAGAAGCTGATATA +
Preference number: 4 (lower is better)
Translates to: LLGITMYLFSHDKGIYWKSDFPF*KIEADI
Trigger: TATATCAGCTTCTATCTTCCAAAAGGGGAAGTCAGA...CTTCCAGTATATACCCTTGTCATGAGAAAAGAGGTACATGGTGATCCCCAAGAG
41% GC, longest homopolymer 4 nt, total homopolymer stretches 16 nt.
Matches the following 2 transcripts:
ENSMUST00000099576.9
ENSMUST00000102547.10
CDS-3UTR CCA 90 bp AGGAAGAACCCAGACACATACAACTCTAGAACATCACGTTATTCTCTACGTGGCTATGGAAAGCGTTATTaGATCTGTCTAGAGTTACAG +
Preference number: 4 (lower is better)
Translates to: RKNPDTYNSRTSRYSLRGYGKRY*ICLELQ
Trigger: CTGTAACTCTAGACAGATCCAATAACGCTTTCCATA...GCCACGTAGAGAATAACGTGATGTTCTAGAGTTGTATGTGTCTGGGTTCTTCCT
41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000099576.9
CDS-3UTR TCA 90 bp GGATCACCATGTACCTCTTTTCTCATGACAAGGGTATATACTGGAAGGCTTAGATTCCTAACTGTTGCTTaGGATTTTCAATGGCTTCTT +
Preference number: 4 (lower is better)
Translates to: GSPCTSFLMTRVYTGRLRFLTVA*DFQWLL
Trigger: AAGAAGCCATTGAAAATCTCAAGCAACAGTTAGGAA...TCTAAGCCTTCCAGTATATACCCTTGTCATGAGAAAAGAGGTACATGGTGATCC
40% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000081349.9
ENSMUST00000099576.9
ENSMUST00000102547.10
CDS-3UTR CCA 90 bp ATGAATTGCCATATTCATGGTCTTCTGATATTCTGCTCACTTATAACGTCCCCTGAGGAAGTCAGCTTTTaGGATAAACTCAGTTTGGGT +
Preference number: 4 (lower is better)
Translates to: MNCHIHGLLIFCSLITSPEEVSF*DKLSLG
Trigger: ACCCAAACTGAGTTTATCCCAAAAGCTGACTTCCTC...AGGGGACGTTATAAGTGAGCAGAATATCAGAAGACCATGAATATGGCAATTCAT
40% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000099576.9
CDS-3UTR CCA 90 bp GGATCACCATGTACCTCTTTTCTCATGACAAGGGTATATACTGGAAGGCTTAGATCAAGTCTTCTTCTTTaGATGTCTCATAGTACTTTC +
Preference number: 4 (lower is better)
Translates to: GSPCTSFLMTRVYTGRLRSSLLL*MSHSTF
Trigger: GAAAGTACTATGAGACATCCAAAGAAGAAGACTTGA...TCTAAGCCTTCCAGTATATACCCTTGTCATGAGAAAAGAGGTACATGGTGATCC
39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000081349.9
ENSMUST00000099576.9
ENSMUST00000102547.10
CDS-3UTR CCA 90 bp ACAATTACATATTCCTGTAGTGTTCCCAAACATAACTTTGCATTGTTCTTGTGGCACGTTCGGCAAAATTaGGAATCTGGGCTAACTCAT +
Preference number: 4 (lower is better)
Translates to: TITYSCSVPKHNFALFLWHVRQN*ESGLTH
Trigger: ATGAGTTAGCCCAGATTCCCAATTTTGCCGAACGTG...CCACAAGAACAATGCAAAGTTATGTTTGGGAACACTACAGGAATATGTAATTGT
39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000081349.9
ENSMUST00000099576.9
ENSMUST00000102547.10
CDS-3UTR CCA 90 bp ACAATTACATATTCCTGTAGTGTTCCCAAACATAACTTTGCATTGTTCTTGTGGGAAAAATATGTCGCCTaGATGTTCGTTTGGCTGCTG +
Preference number: 4 (lower is better)
Translates to: TITYSCSVPKHNFALFLWEKYVA*MFVWLL
Trigger: CAGCAGCCAAACGAACATCCAGGCGACATATTTTTC...CCACAAGAACAATGCAAAGTTATGTTTGGGAACACTACAGGAATATGTAATTGT
39% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000099576.9
ENSMUST00000102547.10
CDS-3UTR TCA 90 bp ACAATTACATATTCCTGTAGTGTTCCCAAACATAACTTTGCATTGTTCTTGTGGCTGTCTTTGGGCTCTTaGGAAGGTTCACATAAAACA +
Preference number: 4 (lower is better)
Translates to: TITYSCSVPKHNFALFLWLSLGS*EGSHKT
Trigger: TGTTTTATGTGAACCTTCTCAAGAGCCCAAAGACAG...CCACAAGAACAATGCAAAGTTATGTTTGGGAACACTACAGGAATATGTAATTGT
38% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000081349.9
CDS-3UTR TCA 90 bp ACAATTACATATTCCTGTAGTGTTCCCAAACATAACTTTGCATTGTTCTTGTGGAAGATTCCCACAGTTTaGGATCGCTTTCCATCCAAT +
Preference number: 4 (lower is better)
Translates to: TITYSCSVPKHNFALFLWKIPTV*DRFPSN
Trigger: ATTGGATGGAAAGCGATCTCAAACTGTGGGAATCTT...CCACAAGAACAATGCAAAGTTATGTTTGGGAACACTACAGGAATATGTAATTGT
38% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000081349.9
ENSMUST00000099576.9
ENSMUST00000102547.10
CDS-3UTR CCA 90 bp ACAATTACATATTCCTGTAGTGTTCCCAAACATAACTTTGCATTGTTCTTGTGGAGCAGTCATCATCTGTaGAAATGCACACATCTCTCA +
Preference number: 4 (lower is better)
Translates to: TITYSCSVPKHNFALFLWSSHHL*KCTHLS
Trigger: TGAGAGATGTGTGCATTTCCACAGATGATGACTGCT...CCACAAGAACAATGCAAAGTTATGTTTGGGAACACTACAGGAATATGTAATTGT
38% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000081349.9
ENSMUST00000099576.9
ENSMUST00000102547.10
3UTR CAA 72 bp ACATATTCCTGTAGTGTTCCCAAACATAACTTTGCATaGTTCTTGTGGATTGACAAGAGACTTCCCAAAGAA +
Preference number: 4 (lower is better)
Translates to: TYSCSVPKHNFA*FLWIDKRLPKE
Trigger: TTCTTTGGGAAGTCTCTTGTCAATCCACAAGAACAATGCAAAGTTATGTTTGGGAACACTACAGGAATATGT
38% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000081349.9
ENSMUST00000099576.9
ENSMUST00000102547.10
3UTR CAA 72 bp CAATTACATATTCCTGTAGTGTTCCCAAACATAACTTaGCATTGTTCTTGTGGATTGACAAGAGACTTCCCA +
Preference number: 4 (lower is better)
Translates to: QLHIPVVFPNIT*HCSCGLTRDFP
Trigger: TGGGAAGTCTCTTGTCAATCCACAAGAACAATGCAAAGTTATGTTTGGGAACACTACAGGAATATGTAATTG
38% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000081349.9
ENSMUST00000099576.9
ENSMUST00000102547.10
CDS CCA 90 bp CGGAGGAGGTGGCGGTGGCGACACAGGACACACAGGTGGTATGGGTaGTGCTGGAGGCAAAGGTCCAAGTCCAGGTGGGAGGGGCGGAGG +
Preference number: 5 (lower is better)
Translates to: RRRWRWRHRTHRWYG*CWRQRSKSRWEGRR
Trigger: CCTCCGCCCCTCCCACCTGGACTTGGACCTTTGCCTCCAGCACCACCCATACCACCTGTGTGTCCTGTGTCGCCACCGCCACCTCCTCCG
67% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000081349.9
ENSMUST00000099576.9
ENSMUST00000102547.10
ENSMUST00000161731.5
ENSMUST00000238883.2
CDS GCA 90 bp AGGAGGTGGCGGTGGCGACACAGGACACACAGGTGGTATGGGTGGTaGTGGAGGCAAAGGTCCAAGTCCAGGTGGGAGGGGCGGAGGTGG +
Preference number: 5 (lower is better)
Translates to: RRWRWRHRTHRWYGW*WRQRSKSRWEGRRW
Trigger: CCACCTCCGCCCCTCCCACCTGGACTTGGACCTTTGCCTCCAGCACCACCCATACCACCTGTGTGTCCTGTGTCGCCACCGCCACCTCCT
66% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000081349.9
ENSMUST00000099576.9
ENSMUST00000102547.10
ENSMUST00000161731.5
ENSMUST00000238883.2
CDS GCA 90 bp AATGCTGACTCCTGGCAGCCACGCCCTTTCCTCCTGGTTCTCTTCTaGCGGAGCTCCTCCGGGCTCTCTCTCCTCCTGCCAGACCTCCGG +
Preference number: 5 (lower is better)
Translates to: NADSWQPRPFLLVLF*RSSSGLSLLLPDLR
Trigger: CCGGAGGTCTGGCAGGAGGAGAGAGAGCCCGGAGGAGCTCCGGCAGAAGAGAACCAGGAGGAAAGGGCGTGGCTGCCAGGAGTCAGCATT
64% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000099576.9
ENSMUST00000102547.10
ENSMUST00000161731.5
CDS CCA 90 bp GCCAGACAGCTTGGAGTCTGCCTGGAGTCCTGTCGTCCTGCTCTGTaGGGCTCTGGTCAGGGCTTTTGGGATCAGACGGGCTGTCTGCCG +
Preference number: 5 (lower is better)
Translates to: ARQLGVCLESCRPAL*GSGQGFWDQTGCLP
Trigger: CGGCAGACAGCCCGTCTGATCCCAAAAGCCCTGACCAGAGCCCCACAGAGCAGGACGACAGGACTCCAGGCAGACTCCAAGCTGTCTGGC
63% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000081349.9
CDS CCA 90 bp TCCCCATCTGAAATGCTGACTCCTGGCAGCCACGCCCTTTCCTCCTaGTTCTCTTCTGCCGGAGCTCCTCCGGGCTCTCTCTCCTCCTGC +
Preference number: 5 (lower is better)
Translates to: SPSEMLTPGSHALSS*FSSAGAPPGSLSSC
Trigger: GCAGGAGGAGAGAGAGCCCGGAGGAGCTCCGGCAGAAGAGAACCAGGAGGAAAGGGCGTGGCTGCCAGGAGTCAGCATTTCAGATGGGGA
62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000099576.9
ENSMUST00000102547.10
ENSMUST00000161731.5
CDS GCA 90 bp TACAGTCTGGTCTGTTGCTGCGGGTGGGATTTGAGACCCTTCTTCTaGAGCCTGGTCCTGCCTGGGGCTGTGCTCTGCCGGATGGCTACC +
Preference number: 5 (lower is better)
Translates to: YSLVCCCGWDLRPFF*SLVLPGAVLCRMAT
Trigger: GGTAGCCATCCGGCAGAGCACAGCCCCAGGCAGGACCAGGCTGCAGAAGAAGGGTCTCAAATCCCACCCGCAGCAACAGACCAGACTGTA
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000081349.9
CDS CCA 90 bp CTGCGGGTGGGATTTGAGACCCTTCTTCTGCAGCCTGGTCCTGCCTaGGGCTGTGCTCTGCCGGATGGCTACCATCACCACCAAGTTCCA +
Preference number: 5 (lower is better)
Translates to: LRVGFETLLLQPGPA*GCALPDGYHHHQVP
Trigger: TGGAACTTGGTGGTGATGGTAGCCATCCGGCAGAGCACAGCCCCAGGCAGGACCAGGCTGCAGAAGAAGGGTCTCAAATCCCACCCGCAG
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000081349.9
CDS-3UTR CAA 90 bp CAGGAACTCCCCGGTGGCCCTTGTGTCTGCAGGAGCAGTGAGGTGCTGTCTTTCGCTGCAGGTACTCCCTaGGGGACTCCTTGCACACCA +
Preference number: 5 (lower is better)
Translates to: QELPGGPCVCRSSEVLSFAAGTP*GTPCTP
Trigger: TGGTGTGCAAGGAGTCCCCAAGGGAGTACCTGCAGC...GAAAGACAGCACCTCACTGCTCCTGCAGACACAAGGGCCACCGGGGAGTTCCTG
61% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000081349.9
ENSMUST00000099576.9
ENSMUST00000102547.10
ENSMUST00000161731.5
CDS TCA 90 bp CCTGGGCTCTTCACTGTCTGTGGGCCTCCCTGTCCCAGAGACTTCTaGACACGCTGGGTCAACTTGAGCAAAGCCAGGTCCCCGTCCTTG +
Preference number: 5 (lower is better)
Translates to: PGLFTVCGPPCPRDF*TRWVNLSKARSPSL
Trigger: CAAGGACGGGGACCTGGCTTTGCTCAAGTTGACCCAGCGTGTTCAGAAGTCTCTGGGACAGGGAGGCCCACAGACAGTGAAGAGCCCAGG
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000081349.9
CDS CCA 90 bp CTGCTCCAGGAGAGTGGGAGTGGCCTTCGGATCAGTTGCTCTACCTaGGCTCTTCACTGTCTGTGGGCCTCCCTGTCCCAGAGACTTCTG +
Preference number: 5 (lower is better)
Translates to: LLQESGSGLRISCST*ALHCLWASLSQRLL
Trigger: CAGAAGTCTCTGGGACAGGGAGGCCCACAGACAGTGAAGAGCCCAGGTAGAGCAACTGATCCGAAGGCCACTCCCACTCTCCTGGAGCAG
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000081349.9
CDS CCA 90 bp TGTGTCCTTTGTCTTTGGGGGTGGCCAGACAGCTTGGAGTCTGCCTaGAGTCCTGTCGTCCTGCTCTGTGGGGCTCTGGTCAGGGTTGAG +
Preference number: 5 (lower is better)
Translates to: CVLCLWGWPDSLESA*SPVVLLCGALVRVE
Trigger: CTCAACCCTGACCAGAGCCCCACAGAGCAGGACGACAGGACTCCAGGCAGACTCCAAGCTGTCTGGCCACCCCCAAAGACAAAGGACACA
60% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000099576.9
ENSMUST00000102547.10
ENSMUST00000238883.2
CDS-3UTR CAA 90 bp TCTTTCAGGAACTCCCCGGTGGCCCTTGTGTCTGCAGGAGCAGTGAGGTGCTGTGTGGACTGGGACACCTaGGAGACAGAGGCGAGGGAA +
Preference number: 5 (lower is better)
Translates to: SFRNSPVALVSAGAVRCCVDWDT*ETEARE
Trigger: TTCCCTCGCCTCTGTCTCCAAGGTGTCCCAGTCCAC...ACAGCACCTCACTGCTCCTGCAGACACAAGGGCCACCGGGGAGTTCCTGAAAGA
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000099576.9
ENSMUST00000102547.10
ENSMUST00000161731.5
CDS TCA 90 bp AGGTTCTCCCAGAGTTTCCGAAGGCCAGGTCTGCATCCGGTGTCCTaGGGATGTTGGCTGGGCAGCTCTCTCTTCTCCGTAGCGAAGAGG +
Preference number: 5 (lower is better)
Translates to: RFSQSFRRPGLHPVS*GCWLGSSLFSVAKR
Trigger: CCTCTTCGCTACGGAGAAGAGAGAGCTGCCCAGCCAACATCCTCAGGACACCGGATGCAGACCTGGCCTTCGGAAACTCTGGGAGAACCT
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000099576.9
ENSMUST00000102547.10
ENSMUST00000161731.5
CDS TCA 90 bp GGAAGTCGGGCTGGCTCCTTTGGTCTCCGTGACCTTCGTAGTAGATaGTGGCTCCAAGGTGTCAGCAGAGGGGAACCCAGAGGAGACGTC +
Preference number: 5 (lower is better)
Translates to: GSRAGSFGLRDLRSR*WLQGVSRGEPRGDV
Trigger: GACGTCTCCTCTGGGTTCCCCTCTGCTGACACCTTGGAGCCATCATCTACTACGAAGGTCACGGAGACCAAAGGAGCCAGCCCGACTTCC
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000099576.9
ENSMUST00000102547.10
ENSMUST00000161731.5
CDS GCA 90 bp GGGGGTGGCCAGACAGCTTGGAGTCTGCCTGGAGTCCTGTCGTCCTaGTCTGTGGGGCTCTGGTCAGGGTTGAGATCCAAGTACAATTCA +
Preference number: 5 (lower is better)
Translates to: GGGQTAWSLPGVLSS*SVGLWSGLRSKYNS
Trigger: TGAATTGTACTTGGATCTCAACCCTGACCAGAGCCCCACAGAGCAGGACGACAGGACTCCAGGCAGACTCCAAGCTGTCTGGCCACCCCC
59% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000099576.9
ENSMUST00000102547.10
ENSMUST00000238883.2
CDS CCA 90 bp GGTCAGGGCTTTTGGGATCAGACGGGCTGTCTGCCGGCCGAGACTTaGACCTCTCGAACACAGCGCGTAGTGACTCCTTCTCATGCTTCA +
Preference number: 5 (lower is better)
Translates to: GQGFWDQTGCLPAET*TSRTQRVVTPSHAS
Trigger: TGAAGCATGAGAAGGAGTCACTACGCGCTGTGTTCGAGAGGTCCAAGTCTCGGCCGGCAGACAGCCCGTCTGATCCCAAAAGCCCTGACC
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000081349.9
CDS CCA 90 bp GGGCTCTCTCTCCTCCTGCCAGACCTCCGGGGCTTTTTGTTCTCTTaGGTGCTCCTCCTAATGAGAGAGCTCACAGGGAGTTCTCTGCGC +
Preference number: 5 (lower is better)
Translates to: GLSLLLPDLRGFLFS*VLLLMRELTGSSLR
Trigger: GCGCAGAGAACTCCCTGTGAGCTCTCTCATTAGGAGGAGCACCCAAGAGAACAAAAAGCCCCGGAGGTCTGGCAGGAGGAGAGAGAGCCC
59% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000099576.9
ENSMUST00000102547.10
ENSMUST00000161731.5
CDS CCA 90 bp GGCCCCAAGCCTTTTTCGGAAGCTTCCTCAGACACCAGCCAAGTTTaGCTTGCTCTGAGGGAAGTCGGGCTGGCTCCTTTGGTCTCCGTG +
Preference number: 5 (lower is better)
Translates to: GPKPFSEASSDTSQV*LALREVGLAPLVSV
Trigger: CACGGAGACCAAAGGAGCCAGCCCGACTTCCCTCAGAGCAAGCCAAACTTGGCTGGTGTCTGAGGAAGCTTCCGAAAAAGGCTTGGGGCC
59% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000099576.9
ENSMUST00000102547.10
ENSMUST00000161731.5
CDS-3UTR CAA 90 bp TCTTTCAGGAACTCCCCGGTGGCCCTTGTGTCTGCAGGAGCAGTGAGGTGCTGTCTCTGGTCAGGGCTTTaGGGATCAGACGGGCTGTCT +
Preference number: 5 (lower is better)
Translates to: SFRNSPVALVSAGAVRCCLWSGL*GSDGLS
Trigger: AGACAGCCCGTCTGATCCCAAAAGCCCTGACCAGAG...ACAGCACCTCACTGCTCCTGCAGACACAAGGGCCACCGGGGAGTTCCTGAAAGA
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000081349.9
CDS-3UTR CAA 90 bp CAGGAACTCCCCGGTGGCCCTTGTGTCTGCAGGAGCAGTGAGGTGCTGTCTTTCTGGCCCCTCCCTGACTaGGTAGCAGTTATGGAAAGC +
Preference number: 5 (lower is better)
Translates to: QELPGGPCVCRSSEVLSFWPLPD*VAVMES
Trigger: GCTTTCCATAACTGCTACCAAGTCAGGGAGGGGCCA...GAAAGACAGCACCTCACTGCTCCTGCAGACACAAGGGCCACCGGGGAGTTCCTG
59% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000099576.9
ENSMUST00000102547.10
ENSMUST00000161731.5
CDS-3UTR CAA 90 bp TCTTTCAGGAACTCCCCGGTGGCCCTTGTGTCTGCAGGAGCAGTGAGGTGCTGTGGTGTCCTGAGGATGTaGGCTGGGCAGCTCTCTCTT +
Preference number: 5 (lower is better)
Translates to: SFRNSPVALVSAGAVRCCGVLRM*AGQLSL
Trigger: AAGAGAGAGCTGCCCAGCCAACATCCTCAGGACACC...ACAGCACCTCACTGCTCCTGCAGACACAAGGGCCACCGGGGAGTTCCTGAAAGA
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000099576.9
ENSMUST00000102547.10
ENSMUST00000161731.5
CDS-3UTR CAA 90 bp CAGGAACTCCCCGGTGGCCCTTGTGTCTGCAGGAGCAGTGAGGTGCTGTCTTTCTTCAGACACATTTGGTaGTGGGGGCTCCTGCTGGTG +
Preference number: 5 (lower is better)
Translates to: QELPGGPCVCRSSEVLSFFRHIW*WGLLLV
Trigger: CACCAGCAGGAGCCCCCACAACCAAATGTGTCTGAA...GAAAGACAGCACCTCACTGCTCCTGCAGACACAAGGGCCACCGGGGAGTTCCTG
59% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000099576.9
ENSMUST00000102547.10
ENSMUST00000161731.5
CDS-3UTR CAA 90 bp CTCCCCGGTGGCCCTTGTGTCTGCAGGAGCAGTGAGGTGCTGTCTTTCATATTGGTGGACTGGGACACCTaGGAGACAGAGGCGAGGGAA +
Preference number: 5 (lower is better)
Translates to: LPGGPCVCRSSEVLSFILVDWDT*ETEARE
Trigger: TTCCCTCGCCTCTGTCTCCAAGGTGTCCCAGTCCAC...CAATATGAAAGACAGCACCTCACTGCTCCTGCAGACACAAGGGCCACCGGGGAG
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000099576.9
ENSMUST00000102547.10
ENSMUST00000161731.5
CDS TCA 90 bp ACTCGGGGTCCGCTTCCTTCTGTTCGGTCCTTGGCATGTCAATGTTaGGCAGCTGTGATAGCTGCTCCAGGAGAGTGGGAGTGGCCTTCG +
Preference number: 5 (lower is better)
Translates to: TRGPLPSVRSLACQC*AAVIAAPGEWEWPS
Trigger: CGAAGGCCACTCCCACTCTCCTGGAGCAGCTATCACAGCTGCTCAACATTGACATGCCAAGGACCGAACAGAAGGAAGCGGACCCCGAGT
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000081349.9
CDS TCA 90 bp AAGGGAGCTACTGGAACAGACCTGGTCCTTCCCCATCTGAAATGCTaGCTCCTGGCAGCCACGCCCTTTCCTCCTGGTTCTCTTCTGCCG +
Preference number: 5 (lower is better)
Translates to: KGATGTDLVLPHLKC*LLAATPFPPGSLLP
Trigger: CGGCAGAAGAGAACCAGGAGGAAAGGGCGTGGCTGCCAGGAGTCAGCATTTCAGATGGGGAAGGACCAGGTCTGTTCCAGTAGCTCCCTT
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000099576.9
ENSMUST00000102547.10
ENSMUST00000161731.5
CDS CCA 90 bp CCTTCTTCTGCAGCCTGGTCCTGCCTGGGGCTGTGCTCTGCCGGATaGCTACCATCACCACCAAGTTCCAGTTTGCTACTTGTCTCAGGT +
Preference number: 5 (lower is better)
Translates to: PSSAAWSCLGLCSAG*LPSPPSSSLLLVSG
Trigger: ACCTGAGACAAGTAGCAAACTGGAACTTGGTGGTGATGGTAGCCATCCGGCAGAGCACAGCCCCAGGCAGGACCAGGCTGCAGAAGAAGG
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000081349.9
CDS-3UTR CAA 90 bp CAGGAACTCCCCGGTGGCCCTTGTGTCTGCAGGAGCAGTGAGGTGCTGTCTTTCCTGCTTCTGGTTGCTTaGCTTTCAGCATCACAGGGC +
Preference number: 5 (lower is better)
Translates to: QELPGGPCVCRSSEVLSFLLLVA*LSASQG
Trigger: GCCCTGTGATGCTGAAAGCAAAGCAACCAGAAGCAG...GAAAGACAGCACCTCACTGCTCCTGCAGACACAAGGGCCACCGGGGAGTTCCTG
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000081349.9
ENSMUST00000099576.9
ENSMUST00000102547.10
ENSMUST00000161731.5
CDS-3UTR CAA 90 bp TCTTTCAGGAACTCCCCGGTGGCCCTTGTGTCTGCAGGAGCAGTGAGGTGCTGTTGGCCCCTCCCTGACTaGGTAGCAGTTATGGAAAGC +
Preference number: 5 (lower is better)
Translates to: SFRNSPVALVSAGAVRCCWPLPD*VAVMES
Trigger: GCTTTCCATAACTGCTACCAAGTCAGGGAGGGGCCA...ACAGCACCTCACTGCTCCTGCAGACACAAGGGCCACCGGGGAGTTCCTGAAAGA
58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000099576.9
ENSMUST00000102547.10
ENSMUST00000161731.5
CDS-3UTR CAA 90 bp CTCCCCGGTGGCCCTTGTGTCTGCAGGAGCAGTGAGGTGCTGTCTTTCATATTGGGTGTCCTGAGGATGTaGGCTGGGCAGCTCTCTCTT +
Preference number: 5 (lower is better)
Translates to: LPGGPCVCRSSEVLSFILGVLRM*AGQLSL
Trigger: AAGAGAGAGCTGCCCAGCCAACATCCTCAGGACACC...CAATATGAAAGACAGCACCTCACTGCTCCTGCAGACACAAGGGCCACCGGGGAG
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000099576.9
ENSMUST00000102547.10
ENSMUST00000161731.5
CDS-3UTR CAA 90 bp TCTTTCAGGAACTCCCCGGTGGCCCTTGTGTCTGCAGGAGCAGTGAGGTGCTGTTTCAGACACATTTGGTaGTGGGGGCTCCTGCTGGTG +
Preference number: 5 (lower is better)
Translates to: SFRNSPVALVSAGAVRCCFRHIW*WGLLLV
Trigger: CACCAGCAGGAGCCCCCACAACCAAATGTGTCTGAA...ACAGCACCTCACTGCTCCTGCAGACACAAGGGCCACCGGGGAGTTCCTGAAAGA
58% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000099576.9
ENSMUST00000102547.10
ENSMUST00000161731.5
CDS-3UTR CAA 90 bp AACTCCCCGGTGGCCCTTGTGTCTGCAGGAGCAGTGAGGTGCTGTCTTTCATATGTCGGGCTGGCTCCTTaGGTCTCCGTGACCTTCGTA +
Preference number: 5 (lower is better)
Translates to: NSPVALVSAGAVRCCLSYVGLAP*VSVTFV
Trigger: TACGAAGGTCACGGAGACCAAAGGAGCCAGCCCGAC...ATATGAAAGACAGCACCTCACTGCTCCTGCAGACACAAGGGCCACCGGGGAGTT
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000099576.9
ENSMUST00000102547.10
ENSMUST00000161731.5
CDS TCA 90 bp TGGGCTCAATGGCTGGTTTACGAGGATACTGGCTGGAAGAAGAGCTaGGTCCAAAGGACAGTCCAGGAGGAGGTGGGGGTGCAAGTCCTG +
Preference number: 5 (lower is better)
Translates to: WAQWLVYEDTGWKKS*VQRTVQEEVGVQVL
Trigger: CAGGACTTGCACCCCCACCTCCTCCTGGACTGTCCTTTGGACTCAGCTCTTCTTCCAGCCAGTATCCTCGTAAACCAGCCATTGAGCCCA
57% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 5 transcripts:
ENSMUST00000081349.9
ENSMUST00000099576.9
ENSMUST00000102547.10
ENSMUST00000161731.5
ENSMUST00000238883.2
CDS TCA 90 bp TTTCAGACACATTTGGTTGTGGGGGCTCCTGCTGGTGAGAACTCTTaGGCTGCCCTCCCACATCAGCATCTCCTACCTCAGTGGGGCTGC +
Preference number: 5 (lower is better)
Translates to: FQTHLVVGAPAGENS*AALPHQHLLPQWGC
Trigger: GCAGCCCCACTGAGGTAGGAGATGCTGATGTGGGAGGGCAGCTCAAGAGTTCTCACCAGCAGGAGCCCCCACAACCAAATGTGTCTGAAA
57% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000099576.9
ENSMUST00000102547.10
ENSMUST00000161731.5
CDS TCA 90 bp ACAACTTCTCCCTCACTAGGCAGTGGTGGGAGCAGAAGGATCCTATaGTGCTGCTGTGGACTGGGACACCTTGGAGACAGAGGCGAGGGA +
Preference number: 5 (lower is better)
Translates to: TTSPSLGSGGSRRIL*CCCGLGHLGDRGEG
Trigger: TCCCTCGCCTCTGTCTCCAAGGTGTCCCAGTCCACAGCAGCATCATAGGATCCTTCTGCTCCCACCACTGCCTAGTGAGGGAGAAGTTGT
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000099576.9
ENSMUST00000102547.10
ENSMUST00000161731.5
CDS GCA 90 bp CTTTGCTGGGATCACCTCGCTCAGGAGCGGGATCCCCCTCTAAACTaGGAAATGCCTTCAGCACAGCATCTTCCTCTTCAGGCTCCAAGG +
Preference number: 5 (lower is better)
Translates to: LCWDHLAQERDPPLN*EMPSAQHLPLQAPR
Trigger: CCTTGGAGCCTGAAGAGGAAGATGCTGTGCTGAAGGCATTTCGCAGTTTAGAGGGGGATCCCGCTCCTGAGCGAGGTGATCCCAGCAAAG
57% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000081349.9
CDS CCA 90 bp AGTGGCCTTCGGATCAGTTGCTCTACCTGGGCTCTTCACTGTCTGTaGGCCTCCCTGTCCCAGAGACTTCTGAACACGCTGGGTCAACTT +
Preference number: 5 (lower is better)
Translates to: SGLRISCSTWALHCL*ASLSQRLLNTLGQL
Trigger: AAGTTGACCCAGCGTGTTCAGAAGTCTCTGGGACAGGGAGGCCCACAGACAGTGAAGAGCCCAGGTAGAGCAACTGATCCGAAGGCCACT
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000081349.9
CDS-3UTR CAA 90 bp TCTTTCAGGAACTCCCCGGTGGCCCTTGTGTCTGCAGGAGCAGTGAGGTGCTGTCTGCTTCTGGTTGCTTaGCTTTCAGCATCACAGGGC +
Preference number: 5 (lower is better)
Translates to: SFRNSPVALVSAGAVRCCLLLVA*LSASQG
Trigger: GCCCTGTGATGCTGAAAGCAAAGCAACCAGAAGCAG...ACAGCACCTCACTGCTCCTGCAGACACAAGGGCCACCGGGGAGTTCCTGAAAGA
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000081349.9
ENSMUST00000099576.9
ENSMUST00000102547.10
ENSMUST00000161731.5
CDS-3UTR CAA 90 bp CAGGAACTCCCCGGTGGCCCTTGTGTCTGCAGGAGCAGTGAGGTGCTGTCTTTCTCTGGCTGCTTCTGGTaGCTTTGCTTTCAGCATCAC +
Preference number: 5 (lower is better)
Translates to: QELPGGPCVCRSSEVLSFSGCFW*LCFQHH
Trigger: GTGATGCTGAAAGCAAAGCAACCAGAAGCAGCCAGA...GAAAGACAGCACCTCACTGCTCCTGCAGACACAAGGGCCACCGGGGAGTTCCTG
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000081349.9
ENSMUST00000099576.9
ENSMUST00000102547.10
ENSMUST00000161731.5
CDS-3UTR CAA 90 bp AACTCCCCGGTGGCCCTTGTGTCTGCAGGAGCAGTGAGGTGCTGTCTTTCATATAGGAGGTGCCTTCTCTaGTCTGGAATGGGGCGTGGA +
Preference number: 5 (lower is better)
Translates to: NSPVALVSAGAVRCCLSYRRCLL*SGMGRG
Trigger: TCCACGCCCCATTCCAGACAAGAGAAGGCACCTCCT...ATATGAAAGACAGCACCTCACTGCTCCTGCAGACACAAGGGCCACCGGGGAGTT
57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000081349.9
ENSMUST00000099576.9
ENSMUST00000102547.10
ENSMUST00000161731.5
CDS-3UTR CAA 90 bp CTCCCCGGTGGCCCTTGTGTCTGCAGGAGCAGTGAGGTGCTGTCTTTCATATTGGGAAGAGCTAGGACATaGGGAAGTGGTGGTGGAGGA +
Preference number: 5 (lower is better)
Translates to: LPGGPCVCRSSEVLSFILGRART*GSGGGG
Trigger: TCCTCCACCACCACTTCCCAATGTCCTAGCTCTTCC...CAATATGAAAGACAGCACCTCACTGCTCCTGCAGACACAAGGGCCACCGGGGAG
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000081349.9
ENSMUST00000099576.9
ENSMUST00000102547.10
ENSMUST00000161731.5
CDS-3UTR CAA 90 bp CTCCCCGGTGGCCCTTGTGTCTGCAGGAGCAGTGAGGTGCTGTCTTTCATATTGTCCCTTGGGGACTCCTaGCACACCAGCTTCATCTGT +
Preference number: 5 (lower is better)
Translates to: LPGGPCVCRSSEVLSFILSLGDS*HTSFIC
Trigger: ACAGATGAAGCTGGTGTGCAAGGAGTCCCCAAGGGA...CAATATGAAAGACAGCACCTCACTGCTCCTGCAGACACAAGGGCCACCGGGGAG
57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000081349.9
ENSMUST00000099576.9
ENSMUST00000102547.10
ENSMUST00000161731.5
CDS-3UTR CAA 90 bp TTCCCAAAGAAGGCACAGGGGACTTTCTGCAGATGGCCTCAGAAGGAGATGAGCGCTGCAGGTACTCCCTaGGGGACTCCTTGCACACCA +
Preference number: 5 (lower is better)
Translates to: FPKKAQGTFCRWPQKEMSAAGTP*GTPCTP
Trigger: TGGTGTGCAAGGAGTCCCCAAGGGAGTACCTGCAGC...GCTCATCTCCTTCTGAGGCCATCTGCAGAAAGTCCCCTGTGCCTTCTTTGGGAA
57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000081349.9
ENSMUST00000099576.9
ENSMUST00000102547.10
CDS-3UTR CAA 90 bp CTCCCCGGTGGCCCTTGTGTCTGCAGGAGCAGTGAGGTGCTGTCTTTCATATTGTGGCCCCTCCCTGACTaGGTAGCAGTTATGGAAAGC +
Preference number: 5 (lower is better)
Translates to: LPGGPCVCRSSEVLSFILWPLPD*VAVMES
Trigger: GCTTTCCATAACTGCTACCAAGTCAGGGAGGGGCCA...CAATATGAAAGACAGCACCTCACTGCTCCTGCAGACACAAGGGCCACCGGGGAG
57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000099576.9
ENSMUST00000102547.10
ENSMUST00000161731.5
CDS-3UTR CAA 90 bp TCTTTCAGGAACTCCCCGGTGGCCCTTGTGTCTGCAGGAGCAGTGAGGTGCTGTTCCTCTCCAATGACTTaGACTTCCGAGTCCTGCTGC +
Preference number: 5 (lower is better)
Translates to: SFRNSPVALVSAGAVRCCSSPMT*TSESCC
Trigger: GCAGCAGGACTCGGAAGTCAAAGTCATTGGAGAGGA...ACAGCACCTCACTGCTCCTGCAGACACAAGGGCCACCGGGGAGTTCCTGAAAGA
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000099576.9
ENSMUST00000102547.10
ENSMUST00000161731.5
CDS TCA 90 bp CGAAAAGAAAGGGAGCTACTGGAACAGACCTGGTCCTTCCCCATCTaGAATGCTGACTCCTGGCAGCCACGCCCTTTCCTCCTGGTTCTC +
Preference number: 5 (lower is better)
Translates to: RKERELLEQTWSFPI*NADSWQPRPFLLVL
Trigger: GAGAACCAGGAGGAAAGGGCGTGGCTGCCAGGAGTCAGCATTTCAGATGGGGAAGGACCAGGTCTGTTCCAGTAGCTCCCTTTCTTTTCG
56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000099576.9
ENSMUST00000102547.10
ENSMUST00000161731.5
CDS GCA 90 bp TTTAGAAACAGTGCTCGCAAGGGCACCTACAGTCTGGTCTGTTGCTaGGGGTGGGATTTGAGACCCTTCTTCTGCAGCCTGGTCCTGCCT +
Preference number: 5 (lower is better)
Translates to: FRNSARKGTYSLVCC*GWDLRPFFCSLVLP
Trigger: AGGCAGGACCAGGCTGCAGAAGAAGGGTCTCAAATCCCACCCGCAGCAACAGACCAGACTGTAGGTGCCCTTGCGAGCACTGTTTCTAAA
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000081349.9
CDS GCA 90 bp CAAGCCTTTTTCGGAAGCTTCCTCAGACACCAGCCAAGTTTGGCTTaGTCTGAGGGAAGTCGGGCTGGCTCCTTTGGTCTCCGTGACCTT +
Preference number: 5 (lower is better)
Translates to: QAFFGSFLRHQPSLA*SEGSRAGSFGLRDL
Trigger: AAGGTCACGGAGACCAAAGGAGCCAGCCCGACTTCCCTCAGAGCAAGCCAAACTTGGCTGGTGTCTGAGGAAGCTTCCGAAAAAGGCTTG
56% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000099576.9
ENSMUST00000102547.10
ENSMUST00000161731.5
CDS CCA 90 bp GTCGCCTGGATGTTCGTTTGGCTGCTGGCTGAGGCTGGTGATGTCTaGCCCCTCCCTGACTTGGTAGCAGTTATGGAAAGCGTTATTGGA +
Preference number: 5 (lower is better)
Translates to: VAWMFVWLLAEAGDV*PLPDLVAVMESVIG
Trigger: TCCAATAACGCTTTCCATAACTGCTACCAAGTCAGGGAGGGGCCAGACATCACCAGCCTCAGCCAGCAGCCAAACGAACATCCAGGCGAC
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000099576.9
ENSMUST00000102547.10
ENSMUST00000161731.5
CDS CCA 90 bp GTTCTCTGCGCCAGTTGCCAGCACTCTGGAAATACTCATCCCCAGTaGCAAGGATTACTGACAGCTCCTGCAACTTTCCCTCCTGGCTCC +
Preference number: 5 (lower is better)
Translates to: VLCASCQHSGNTHPQ*QGLLTAPATFPPGS
Trigger: GGAGCCAGGAGGGAAAGTTGCAGGAGCTGTCAGTAATCCTTGCCACTGGGGATGAGTATTTCCAGAGTGCTGGCAACTGGCGCAGAGAAC
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000099576.9
ENSMUST00000102547.10
ENSMUST00000161731.5
CDS CCA 90 bp TGCGGTAGCCCAGCCTTCCTTTGGCTTCGAGTTTCTGGGAAAGTGTaGGTGGCCCTTGTGTTGAGAGAGAAGCCCAACCTTTTCCCCTCT +
Preference number: 5 (lower is better)
Translates to: CGSPAFLWLRVSGKV*VALVLREKPNLFPS
Trigger: AGAGGGGAAAAGGTTGGGCTTCTCTCTCAACACAAGGGCCACCCACACTTTCCCAGAAACTCGAAGCCAAAGGAAGGCTGGGCTACCGCA
56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000099576.9
ENSMUST00000102547.10
ENSMUST00000161731.5
CDS-3UTR CAA 90 bp AACTCCCCGGTGGCCCTTGTGTCTGCAGGAGCAGTGAGGTGCTGTCTTTCATATCTGTGTCCTTTGTCTTaGGGGGTGGCCAGACAGCTT +
Preference number: 5 (lower is better)
Translates to: NSPVALVSAGAVRCCLSYLCPLS*GVARQL
Trigger: AAGCTGTCTGGCCACCCCCAAAGACAAAGGACACAG...ATATGAAAGACAGCACCTCACTGCTCCTGCAGACACAAGGGCCACCGGGGAGTT
56% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000081349.9
ENSMUST00000099576.9
ENSMUST00000102547.10
CDS-3UTR CAA 90 bp AACTCCCCGGTGGCCCTTGTGTCTGCAGGAGCAGTGAGGTGCTGTCTTTCATATGGAAGAGCTAGGACATaGGGAAGTGGTGGTGGAGGA +
Preference number: 5 (lower is better)
Translates to: NSPVALVSAGAVRCCLSYGRART*GSGGGG
Trigger: TCCTCCACCACCACTTCCCAATGTCCTAGCTCTTCC...ATATGAAAGACAGCACCTCACTGCTCCTGCAGACACAAGGGCCACCGGGGAGTT
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000081349.9
ENSMUST00000099576.9
ENSMUST00000102547.10
ENSMUST00000161731.5
CDS-3UTR CAA 90 bp TCTTTCAGGAACTCCCCGGTGGCCCTTGTGTCTGCAGGAGCAGTGAGGTGCTGTGCACGTTCGGCAAAATaGGGAATCTGGGCTAACTCA +
Preference number: 5 (lower is better)
Translates to: SFRNSPVALVSAGAVRCCARSAK*GIWANS
Trigger: TGAGTTAGCCCAGATTCCCAATTTTGCCGAACGTGC...ACAGCACCTCACTGCTCCTGCAGACACAAGGGCCACCGGGGAGTTCCTGAAAGA
56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000081349.9
ENSMUST00000099576.9
ENSMUST00000102547.10
ENSMUST00000161731.5
CDS-3UTR CAA 90 bp CAACTGTTTGGAACGCCCGGCCCAGGAGATCTAACAGCCTCCTGCTGGCTTCTAAGTTCTCTGCGCCAGTaGCCAGCACTCTGGAAATAC +
Preference number: 5 (lower is better)
Translates to: QLFGTPGPGDLTASCWLLSSLRQ*PALWKY
Trigger: GTATTTCCAGAGTGCTGGCAACTGGCGCAGAGAACT...TAGAAGCCAGCAGGAGGCTGTTAGATCTCCTGGGCCGGGCGTTCCAAACAGTTG
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000099576.9
CDS-3UTR CAA 90 bp TCTTTCAGGAACTCCCCGGTGGCCCTTGTGTCTGCAGGAGCAGTGAGGTGCTGTGGGCTTTTTGTTCTCTaGGGTGCTCCTCCTAATGAG +
Preference number: 5 (lower is better)
Translates to: SFRNSPVALVSAGAVRCCGLFVL*GAPPNE
Trigger: CTCATTAGGAGGAGCACCCAAGAGAACAAAAAGCCC...ACAGCACCTCACTGCTCCTGCAGACACAAGGGCCACCGGGGAGTTCCTGAAAGA
56% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000099576.9
ENSMUST00000102547.10
ENSMUST00000161731.5
CDS-3UTR CAA 90 bp CCGGTGGCCCTTGTGTCTGCAGGAGCAGTGAGGTGCTGTCTTTCATATTGTAACGACCTCCGGGGCTTTTaGTTCTCTTGGGTGCTCCTC +
Preference number: 5 (lower is better)
Translates to: PVALVSAGAVRCCLSYCNDLRGF*FSWVLL
Trigger: GAGGAGCACCCAAGAGAACAAAAAGCCCCGGAGGTC...GTTACAATATGAAAGACAGCACCTCACTGCTCCTGCAGACACAAGGGCCACCGG
56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000099576.9
ENSMUST00000102547.10
ENSMUST00000161731.5
CDS-3UTR CAA 90 bp AGACTTCCCAAAGAAGGCACAGGGGACTTTCTGCAGATGGCCTCAGAAGGAGATGTCGGGCTGGCTCCTTaGGTCTCCGTGACCTTCGTA +
Preference number: 5 (lower is better)
Translates to: RLPKEGTGDFLQMASEGDVGLAP*VSVTFV
Trigger: TACGAAGGTCACGGAGACCAAAGGAGCCAGCCCGAC...ATCTCCTTCTGAGGCCATCTGCAGAAAGTCCCCTGTGCCTTCTTTGGGAAGTCT
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000099576.9
ENSMUST00000102547.10
CDS GCA 90 bp TCTTTTAGAAACAGTGCTCGCAAGGGCACCTACAGTCTGGTCTGTTaGTGCGGGTGGGATTTGAGACCCTTCTTCTGCAGCCTGGTCCTG +
Preference number: 5 (lower is better)
Translates to: SFRNSARKGTYSLVC*CGWDLRPFFCSLVL
Trigger: CAGGACCAGGCTGCAGAAGAAGGGTCTCAAATCCCACCCGCAGCAACAGACCAGACTGTAGGTGCCCTTGCGAGCACTGTTTCTAAAAGA
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000081349.9
CDS GCA 90 bp CCTACCGTGTGCGGCAGATCCAGAAGCAAGAATTTATGGCCACTCTaGGGTAGCCCAGCCTTCCTTTGGCTTCGAGTTTCTGGGAAAGTG +
Preference number: 5 (lower is better)
Translates to: PTVCGRSRSKNLWPL*GSPAFLWLRVSGKV
Trigger: CACTTTCCCAGAAACTCGAAGCCAAAGGAAGGCTGGGCTACCGCAGAGTGGCCATAAATTCTTGCTTCTGGATCTGCCGCACACGGTAGG
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000099576.9
ENSMUST00000102547.10
ENSMUST00000161731.5
CDS CCA 90 bp TGCGGTAGCCCCCTTCTTCAGCACACGGAGCCCACTGAAGAAAGCTaGAAGCTGGAAGGGCTTCTCTTCCGGAGCTTCTCTTTTAGAAAC +
Preference number: 5 (lower is better)
Translates to: CGSPLLQHTEPTEES*KLEGLLFRSFSFRN
Trigger: GTTTCTAAAAGAGAAGCTCCGGAAGAGAAGCCCTTCCAGCTTCCAGCTTTCTTCAGTGGGCTCCGTGTGCTGAAGAAGGGGGCTACCGCA
54% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000081349.9
CDS CCA 90 bp TTACTGAGCGCCTGTGTCGGCACTTCCAGACCTTGGGAACTGAAATaGGCTGCCCGTATCTTGGATTATAGCGGTAGCATGCACCCATGG +
Preference number: 5 (lower is better)
Translates to: LLSACVGTSRPWELK*AARILDYSGSMHPW
Trigger: CCATGGGTGCATGCTACCGCTATAATCCAAGATACGGGCAGCCCATTTCAGTTCCCAAGGTCTGGAAGTGCCGACACAGGCGCTCAGTAA
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000238883.2
CDS CCA 90 bp CTTCATCTGGGGTTACTGAGCGCCTGTGTCGGCACTTCCAGACCTTaGGAACTGAAATGGGCTGCCCGTATCTTGGATTATAGCGGTAGC +
Preference number: 5 (lower is better)
Translates to: LHLGLLSACVGTSRP*ELKWAARILDYSGS
Trigger: GCTACCGCTATAATCCAAGATACGGGCAGCCCATTTCAGTTCCCAAGGTCTGGAAGTGCCGACACAGGCGCTCAGTAACCCCAGATGAAG
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000238883.2
CDS-3UTR CAA 90 bp TCCCCGGTGGCCCTTGTGTCTGCAGGAGCAGTGAGGTGCTGTCTTTCATATTGTTCCCCGTCCTTGGGTTaGATTTCAGTGATGGTCTCC +
Preference number: 5 (lower is better)
Translates to: SPVALVSAGAVRCCLSYCSPSLG*ISVMVS
Trigger: GGAGACCATCACTGAAATCAAACCCAAGGACGGGGA...ACAATATGAAAGACAGCACCTCACTGCTCCTGCAGACACAAGGGCCACCGGGGA
54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000081349.9
CDS-3UTR CAA 90 bp AACTCCCCGGTGGCCCTTGTGTCTGCAGGAGCAGTGAGGTGCTGTCTTTCATATTCAGCATCACAGGGCTaGAGGAAGGTCTCTCTGTCT +
Preference number: 5 (lower is better)
Translates to: NSPVALVSAGAVRCCLSYSASQG*RKVSLS
Trigger: AGACAGAGAGACCTTCCTCAAGCCCTGTGATGCTGA...ATATGAAAGACAGCACCTCACTGCTCCTGCAGACACAAGGGCCACCGGGGAGTT
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000081349.9
ENSMUST00000099576.9
ENSMUST00000102547.10
ENSMUST00000161731.5
CDS-3UTR CAA 90 bp TCCCCGGTGGCCCTTGTGTCTGCAGGAGCAGTGAGGTGCTGTCTTTCATATTGTCTGCTTCTGGTTGCTTaGCTTTCAGCATCACAGGGC +
Preference number: 5 (lower is better)
Translates to: SPVALVSAGAVRCCLSYCLLLVA*LSASQG
Trigger: GCCCTGTGATGCTGAAAGCAAAGCAACCAGAAGCAG...ACAATATGAAAGACAGCACCTCACTGCTCCTGCAGACACAAGGGCCACCGGGGA
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000081349.9
ENSMUST00000099576.9
ENSMUST00000102547.10
ENSMUST00000161731.5
CDS-3UTR CAA 90 bp TCTTTCAGGAACTCCCCGGTGGCCCTTGTGTCTGCAGGAGCAGTGAGGTGCTGTTGTCTTTGCTGTCTTTaGAGGGAGAGAGCTGGGTTA +
Preference number: 5 (lower is better)
Translates to: SFRNSPVALVSAGAVRCCCLCCL*RERAGL
Trigger: TAACCCAGCTCTCTCCCTCAAAAGACAGCAAAGACA...ACAGCACCTCACTGCTCCTGCAGACACAAGGGCCACCGGGGAGTTCCTGAAAGA
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000081349.9
ENSMUST00000099576.9
ENSMUST00000102547.10
ENSMUST00000161731.5
CDS-3UTR CAA 90 bp GTGGCCCTTGTGTCTGCAGGAGCAGTGAGGTGCTGTCTTTCATATTGTAACTTCGAGGACCGCAATGACTaGATCCCTGGCTGCTCCTCC +
Preference number: 5 (lower is better)
Translates to: VALVSAGAVRCCLSYCNFEDRND*IPGCSS
Trigger: GGAGGAGCAGCCAGGGATCAAGTCATTGCGGTCCTC...GAAGTTACAATATGAAAGACAGCACCTCACTGCTCCTGCAGACACAAGGGCCAC
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000099576.9
ENSMUST00000102547.10
ENSMUST00000161731.5
CDS-3UTR CAA 90 bp GTGGCCCTTGTGTCTGCAGGAGCAGTGAGGTGCTGTCTTTCATATTGTAACTTCGTCGGGCTGGCTCCTTaGGTCTCCGTGACCTTCGTA +
Preference number: 5 (lower is better)
Translates to: VALVSAGAVRCCLSYCNFVGLAP*VSVTFV
Trigger: TACGAAGGTCACGGAGACCAAAGGAGCCAGCCCGAC...GAAGTTACAATATGAAAGACAGCACCTCACTGCTCCTGCAGACACAAGGGCCAC
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000099576.9
ENSMUST00000102547.10
ENSMUST00000161731.5
CDS-3UTR CAA 90 bp AACTCCCCGGTGGCCCTTGTGTCTGCAGGAGCAGTGAGGTGCTGTCTTTCATATAGCGGGAAAACACTCTaGTCTGTTCCAGCTTCCTGC +
Preference number: 5 (lower is better)
Translates to: NSPVALVSAGAVRCCLSYSGKTL*SVPASC
Trigger: GCAGGAAGCTGGAACAGACAAGAGTGTTTTCCCGCT...ATATGAAAGACAGCACCTCACTGCTCCTGCAGACACAAGGGCCACCGGGGAGTT
54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000102547.10
CDS GCA 90 bp TTCTGTTCGGTCCTTGGCATGTCAATGTTGAGCAGCTGTGATAGCTaGTCCAGGAGAGTGGGAGTGGCCTTCGGATCAGTTGCTCTACCT +
Preference number: 5 (lower is better)
Translates to: FCSVLGMSMLSSCDS*SRRVGVAFGSVALP
Trigger: AGGTAGAGCAACTGATCCGAAGGCCACTCCCACTCTCCTGGAGCAGCTATCACAGCTGCTCAACATTGACATGCCAAGGACCGAACAGAA
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000081349.9
CDS CCA 90 bp ACTCAGGATCGACTGAGCCATCTCAAGTCCGGCTTCGGATTTGTCTaGTTCCAGCACATCTCTGCTGCTGAGAGAGTTACCAACCTCCTC +
Preference number: 5 (lower is better)
Translates to: TQDRLSHLKSGFGFV*FQHISAAERVTNLL
Trigger: GAGGAGGTTGGTAACTCTCTCAGCAGCAGAGATGTGCTGGAACCAGACAAATCCGAAGCCGGACTTGAGATGGCTCAGTCGATCCTGAGT
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000081349.9
CDS CCA 90 bp GGTTTCATAGGACAGCTGGGCTCAATGGCTGGTTTACGAGGATACTaGCTGGAAGAAGAGCTGAGTCCAAAGGACAGTCCAGGAGGAGGT +
Preference number: 5 (lower is better)
Translates to: GFIGQLGSMAGLRGY*LEEELSPKDSPGGG
Trigger: ACCTCCTCCTGGACTGTCCTTTGGACTCAGCTCTTCTTCCAGCCAGTATCCTCGTAAACCAGCCATTGAGCCCAGCTGTCCTATGAAACC
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000081349.9
ENSMUST00000099576.9
ENSMUST00000102547.10
ENSMUST00000161731.5
ENSMUST00000238883.2
CDS CCA 90 bp GAATCAGGACCTACCGTGTGCGGCAGATCCAGAAGCAAGAATTTATaGCCACTCTGCGGTAGCCCAGCCTTCCTTTGGCTTCGAGTTTCT +
Preference number: 5 (lower is better)
Translates to: ESGPTVCGRSRSKNL*PLCGSPAFLWLRVS
Trigger: AGAAACTCGAAGCCAAAGGAAGGCTGGGCTACCGCAGAGTGGCCATAAATTCTTGCTTCTGGATCTGCCGCACACGGTAGGTCCTGATTC
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000099576.9
ENSMUST00000102547.10
ENSMUST00000161731.5
CDS-3UTR CAA 90 bp AACTCCCCGGTGGCCCTTGTGTCTGCAGGAGCAGTGAGGTGCTGTCTTTCATATCTTGGCATGTCAATGTaGAGCAGCTGTGATAGCTGC +
Preference number: 5 (lower is better)
Translates to: NSPVALVSAGAVRCCLSYLGMSM*SSCDSC
Trigger: GCAGCTATCACAGCTGCTCAACATTGACATGCCAAG...ATATGAAAGACAGCACCTCACTGCTCCTGCAGACACAAGGGCCACCGGGGAGTT
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000081349.9
CDS-3UTR CAA 90 bp CCGGTGGCCCTTGTGTCTGCAGGAGCAGTGAGGTGCTGTCTTTCATATTGTAACTCAGCATCACAGGGCTaGAGGAAGGTCTCTCTGTCT +
Preference number: 5 (lower is better)
Translates to: PVALVSAGAVRCCLSYCNSASQG*RKVSLS
Trigger: AGACAGAGAGACCTTCCTCAAGCCCTGTGATGCTGA...GTTACAATATGAAAGACAGCACCTCACTGCTCCTGCAGACACAAGGGCCACCGG
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000081349.9
ENSMUST00000099576.9
ENSMUST00000102547.10
ENSMUST00000161731.5
CDS-3UTR CAA 90 bp TCTTTCAGGAACTCCCCGGTGGCCCTTGTGTCTGCAGGAGCAGTGAGGTGCTGTCAAGATTCCCACAGTTaGAGATCGCTTTCCATCCAA +
Preference number: 5 (lower is better)
Translates to: SFRNSPVALVSAGAVRCCQDSHS*RSLSIQ
Trigger: TTGGATGGAAAGCGATCTCAAACTGTGGGAATCTTG...ACAGCACCTCACTGCTCCTGCAGACACAAGGGCCACCGGGGAGTTCCTGAAAGA
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000081349.9
ENSMUST00000099576.9
ENSMUST00000102547.10
ENSMUST00000161731.5
CDS-3UTR CAA 90 bp AACTCCCCGGTGGCCCTTGTGTCTGCAGGAGCAGTGAGGTGCTGTCTTTCATATCCATTGTCCCGACTTTaGACGTCTTTGAGTTTGGGC +
Preference number: 5 (lower is better)
Translates to: NSPVALVSAGAVRCCLSYPLSRL*TSLSLG
Trigger: GCCCAAACTCAAAGACGTCAAAAGTCGGGACAATGG...ATATGAAAGACAGCACCTCACTGCTCCTGCAGACACAAGGGCCACCGGGGAGTT
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000081349.9
ENSMUST00000099576.9
ENSMUST00000102547.10
ENSMUST00000161731.5
CDS-3UTR CAA 90 bp TCCCCGGTGGCCCTTGTGTCTGCAGGAGCAGTGAGGTGCTGTCTTTCATATTGTCCATTGTCCCGACTTTaGACGTCTTTGAGTTTGGGC +
Preference number: 5 (lower is better)
Translates to: SPVALVSAGAVRCCLSYCPLSRL*TSLSLG
Trigger: GCCCAAACTCAAAGACGTCAAAAGTCGGGACAATGG...ACAATATGAAAGACAGCACCTCACTGCTCCTGCAGACACAAGGGCCACCGGGGA
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000081349.9
ENSMUST00000099576.9
ENSMUST00000102547.10
ENSMUST00000161731.5
CDS-3UTR CAA 90 bp TCTTTCAGGAACTCCCCGGTGGCCCTTGTGTCTGCAGGAGCAGTGAGGTGCTGTTCATCTGTTGCTCACTaGCTTCTAGTTGACGCTTCA +
Preference number: 5 (lower is better)
Translates to: SFRNSPVALVSAGAVRCCSSVAH*LLVDAS
Trigger: TGAAGCGTCAACTAGAAGCAAGTGAGCAACAGATGA...ACAGCACCTCACTGCTCCTGCAGACACAAGGGCCACCGGGGAGTTCCTGAAAGA
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000081349.9
ENSMUST00000099576.9
ENSMUST00000102547.10
ENSMUST00000161731.5
CDS-3UTR CAA 90 bp TCCCCGGTGGCCCTTGTGTCTGCAGGAGCAGTGAGGTGCTGTCTTTCATATTGTAAGAACTCCTCCAGTTaGTCCTTGAAAGGCTGCAGG +
Preference number: 5 (lower is better)
Translates to: SPVALVSAGAVRCCLSYCKNSSS*SLKGCR
Trigger: CCTGCAGCCTTTCAAGGACAAACTGGAGGAGTTCTT...ACAATATGAAAGACAGCACCTCACTGCTCCTGCAGACACAAGGGCCACCGGGGA
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000081349.9
ENSMUST00000099576.9
ENSMUST00000102547.10
ENSMUST00000161731.5
CDS-3UTR CAA 90 bp TCTTTCAGGAACTCCCCGGTGGCCCTTGTGTCTGCAGGAGCAGTGAGGTGCTGTAGACTAGCGGTGGGATaGATTTTCTTTGTCTCCACT +
Preference number: 5 (lower is better)
Translates to: SFRNSPVALVSAGAVRCCRLAVG*IFFVST
Trigger: AGTGGAGACAAAGAAAATCAATCCCACCGCTAGTCT...ACAGCACCTCACTGCTCCTGCAGACACAAGGGCCACCGGGGAGTTCCTGAAAGA
53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000081349.9
ENSMUST00000099576.9
ENSMUST00000102547.10
ENSMUST00000161731.5
CDS-3UTR CAA 90 bp GCCTCTGTGATCCCAGGTGGTGCTAAGAAAAACCAAACCAAGCCAACCCATAAGGACCTCCGGGGCTTTTaGTTCTCTTGGGTGCTCCTC +
Preference number: 5 (lower is better)
Translates to: ASVIPGGAKKNQTKPTHKDLRGF*FSWVLL
Trigger: GAGGAGCACCCAAGAGAACAAAAAGCCCCGGAGGTC...CTTATGGGTTGGCTTGGTTTGGTTTTTCTTAGCACCACCTGGGATCACAGAGGC
53% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 1 transcripts:
ENSMUST00000099576.9
CDS-3UTR CAA 90 bp CAACTGTTTGGAACGCCCGGCCCAGGAGATCTAACAGCCTCCTGCTGGCTTCTATCACTCTCTATCACCTaGCGGAGAACCTTGTTCACA +
Preference number: 5 (lower is better)
Translates to: QLFGTPGPGDLTASCWLLSLSIT*RRTLFT
Trigger: TGTGAACAAGGTTCTCCGCAAGGTGATAGAGAGTGA...TAGAAGCCAGCAGGAGGCTGTTAGATCTCCTGGGCCGGGCGTTCCAAACAGTTG
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000099576.9
CDS TCA 90 bp GACAGAGGCGAGGGAACAGGTGACAGCCGTTTGTGTGCGCTGGACTaGGGCGATGAATTATTAAATACCATGCCAAGAGCTGTTGGAACC +
Preference number: 5 (lower is better)
Translates to: DRGEGTGDSRLCALD*GDELLNTMPRAVGT
Trigger: GGTTCCAACAGCTCTTGGCATGGTATTTAATAATTCATCGCCTCAGTCCAGCGCACACAAACGGCTGTCACCTGTTCCCTCGCCTCTGTC
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000099576.9
ENSMUST00000102547.10
ENSMUST00000161731.5
CDS GCA 90 bp CTCTGGAAATACTCATCCCCAGTGGCAAGGATTACTGACAGCTCCTaGAACTTTCCCTCCTGGCTCCCCATTGAAACACCGAGGATGTTG +
Preference number: 5 (lower is better)
Translates to: LWKYSSPVARITDSS*NFPSWLPIETPRML
Trigger: CAACATCCTCGGTGTTTCAATGGGGAGCCAGGAGGGAAAGTTGCAGGAGCTGTCAGTAATCCTTGCCACTGGGGATGAGTATTTCCAGAG
52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000099576.9
ENSMUST00000102547.10
ENSMUST00000161731.5
CDS GCA 90 bp TTCTTCTCATCGCATTTGGGTTGTGGGGAATCAGGACCTACCGTGTaGGGCAGATCCAGAAGCAAGAATTTATGGCCACTCTGCGGTAGC +
Preference number: 5 (lower is better)
Translates to: FFSSHLGCGESGPTV*GRSRSKNLWPLCGS
Trigger: GCTACCGCAGAGTGGCCATAAATTCTTGCTTCTGGATCTGCCGCACACGGTAGGTCCTGATTCCCCACAACCCAAATGCGATGAGAAGAA
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000099576.9
ENSMUST00000102547.10
ENSMUST00000161731.5
CDS GCA 90 bp GTAACCAGGGACCCAAACCCCTCCATCCTTATTGGGAAGGTCTTTTaGCGTCTGCTCTTTGAAGTTGTCACAGGGAAAGCCTTCAGAGGC +
Preference number: 5 (lower is better)
Translates to: VTRDPNPSILIGKVF*RLLFEVVTGKAFRG
Trigger: GCCTCTGAAGGCTTTCCCTGTGACAACTTCAAAGAGCAGACGGCAAAAGACCTTCCCAATAAGGATGGAGGGGTTTGGGTCCCTGGTTAC
52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000099576.9
ENSMUST00000102547.10
ENSMUST00000238883.2
CDS CCA 90 bp GAAGAACTCCTCCAGTTTGTCCTTGAAAGGCTGCAGGTACTCCCTTaGGGACTCCTTGCACACCAGCTTCATCTGTTGCTCACTTGCTTC +
Preference number: 5 (lower is better)
Translates to: EELLQFVLERLQVLP*GLLAHQLHLLLTCF
Trigger: GAAGCAAGTGAGCAACAGATGAAGCTGGTGTGCAAGGAGTCCCCAAGGGAGTACCTGCAGCCTTTCAAGGACAAACTGGAGGAGTTCTTC
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000081349.9
ENSMUST00000099576.9
ENSMUST00000102547.10
ENSMUST00000161731.5
ENSMUST00000238883.2
CDS-3UTR CAA 90 bp CCGGTGGCCCTTGTGTCTGCAGGAGCAGTGAGGTGCTGTCTTTCATATTGTAACTCTGGCTGCTTCTGGTaGCTTTGCTTTCAGCATCAC +
Preference number: 5 (lower is better)
Translates to: PVALVSAGAVRCCLSYCNSGCFW*LCFQHH
Trigger: GTGATGCTGAAAGCAAAGCAACCAGAAGCAGCCAGA...GTTACAATATGAAAGACAGCACCTCACTGCTCCTGCAGACACAAGGGCCACCGG
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000081349.9
ENSMUST00000099576.9
ENSMUST00000102547.10
ENSMUST00000161731.5
CDS-3UTR CAA 90 bp TCCCCGGTGGCCCTTGTGTCTGCAGGAGCAGTGAGGTGCTGTCTTTCATATTGTGAGATAGTCAGCTTCTaGGGTACTATCTGGCTGCTT +
Preference number: 5 (lower is better)
Translates to: SPVALVSAGAVRCCLSYCEIVSF*GTIWLL
Trigger: AAGCAGCCAGATAGTACCCAAGAAGCTGACTATCTC...ACAATATGAAAGACAGCACCTCACTGCTCCTGCAGACACAAGGGCCACCGGGGA
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000081349.9
ENSMUST00000099576.9
ENSMUST00000102547.10
ENSMUST00000161731.5
CDS-3UTR CAA 90 bp GCCCTTGTGTCTGCAGGAGCAGTGAGGTGCTGTCTTTCATATTGTAACTTCCTTAGGAGGTGCCTTCTCTaGTCTGGAATGGGGCGTGGA +
Preference number: 5 (lower is better)
Translates to: ALVSAGAVRCCLSYCNFLRRCLL*SGMGRG
Trigger: TCCACGCCCCATTCCAGACAAGAGAAGGCACCTCCT...AAGGAAGTTACAATATGAAAGACAGCACCTCACTGCTCCTGCAGACACAAGGGC
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000081349.9
ENSMUST00000099576.9
ENSMUST00000102547.10
ENSMUST00000161731.5
CDS-3UTR CAA 90 bp GTGGCCCTTGTGTCTGCAGGAGCAGTGAGGTGCTGTCTTTCATATTGTAACTTCGGAAGAGCTAGGACATaGGGAAGTGGTGGTGGAGGA +
Preference number: 5 (lower is better)
Translates to: VALVSAGAVRCCLSYCNFGRART*GSGGGG
Trigger: TCCTCCACCACCACTTCCCAATGTCCTAGCTCTTCC...GAAGTTACAATATGAAAGACAGCACCTCACTGCTCCTGCAGACACAAGGGCCAC
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000081349.9
ENSMUST00000099576.9
ENSMUST00000102547.10
ENSMUST00000161731.5
CDS-3UTR CAA 90 bp TCTTTCAGGAACTCCCCGGTGGCCCTTGTGTCTGCAGGAGCAGTGAGGTGCTGTCGACTTTTGACGTCTTaGAGTTTGGGCAGAATTTCT +
Preference number: 5 (lower is better)
Translates to: SFRNSPVALVSAGAVRCCRLLTS*SLGRIS
Trigger: AGAAATTCTGCCCAAACTCAAAGACGTCAAAAGTCG...ACAGCACCTCACTGCTCCTGCAGACACAAGGGCCACCGGGGAGTTCCTGAAAGA
52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000081349.9
ENSMUST00000099576.9
ENSMUST00000102547.10
ENSMUST00000161731.5
CDS-3UTR CAA 90 bp CCGGTGGCCCTTGTGTCTGCAGGAGCAGTGAGGTGCTGTCTTTCATATTGTAACCCATTGTCCCGACTTTaGACGTCTTTGAGTTTGGGC +
Preference number: 5 (lower is better)
Translates to: PVALVSAGAVRCCLSYCNPLSRL*TSLSLG
Trigger: GCCCAAACTCAAAGACGTCAAAAGTCGGGACAATGG...GTTACAATATGAAAGACAGCACCTCACTGCTCCTGCAGACACAAGGGCCACCGG
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000081349.9
ENSMUST00000099576.9
ENSMUST00000102547.10
ENSMUST00000161731.5
CDS-3UTR CAA 90 bp GCATTGTTCTTGTGGATTGACAAGAGACTTCCCAAAGAAGGCACAGGGGACTTTGCTGCAGGTACTCCCTaGGGGACTCCTTGCACACCA +
Preference number: 5 (lower is better)
Translates to: ALFLWIDKRLPKEGTGDFAAGTP*GTPCTP
Trigger: TGGTGTGCAAGGAGTCCCCAAGGGAGTACCTGCAGC...AAAGTCCCCTGTGCCTTCTTTGGGAAGTCTCTTGTCAATCCACAAGAACAATGC
52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000081349.9
ENSMUST00000099576.9
ENSMUST00000102547.10
CDS-3UTR CAA 90 bp CAGGAACTCCCCGGTGGCCCTTGTGTCTGCAGGAGCAGTGAGGTGCTGTCTTTCATCTTGTGCTCTTTTTaGGCTTTCTTGAAGAACTCC +
Preference number: 5 (lower is better)
Translates to: QELPGGPCVCRSSEVLSFILCSF*AFLKNS
Trigger: GGAGTTCTTCAAGAAAGCCAAAAAAGAGCACAAGAT...GAAAGACAGCACCTCACTGCTCCTGCAGACACAAGGGCCACCGGGGAGTTCCTG
52% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 4 transcripts:
ENSMUST00000081349.9
ENSMUST00000099576.9
ENSMUST00000102547.10
ENSMUST00000161731.5
CDS-3UTR CAA 90 bp TCTTTCAGGAACTCCCCGGTGGCCCTTGTGTCTGCAGGAGCAGTGAGGTGCTGTCCTTCTCTCCAGTCTTaGGCTTCATTCCAAAATATC +
Preference number: 5 (lower is better)
Translates to: SFRNSPVALVSAGAVRCCPSLQS*ASFQNI
Trigger: GATATTTTGGAATGAAGCCAAAGACTGGAGAGAAGG...ACAGCACCTCACTGCTCCTGCAGACACAAGGGCCACCGGGGAGTTCCTGAAAGA
52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000081349.9
ENSMUST00000099576.9
ENSMUST00000102547.10
ENSMUST00000161731.5
CDS-3UTR CAA 90 bp TCCCCGGTGGCCCTTGTGTCTGCAGGAGCAGTGAGGTGCTGTCTTTCATATTGTCGCTTCCAAATGGTCTaGAAGTCACTGCAGAACTCA +
Preference number: 5 (lower is better)
Translates to: SPVALVSAGAVRCCLSYCRFQMV*KSLQNS
Trigger: TGAGTTCTGCAGTGACTTCAAGACCATTTGGAAGCG...ACAATATGAAAGACAGCACCTCACTGCTCCTGCAGACACAAGGGCCACCGGGGA
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000081349.9
ENSMUST00000099576.9
ENSMUST00000102547.10
ENSMUST00000161731.5
CDS-3UTR CAA 90 bp AACTCCCCGGTGGCCCTTGTGTCTGCAGGAGCAGTGAGGTGCTGTCTTTCATATCGCTTCCAAATGGTCTaGAAGTCACTGCAGAACTCA +
Preference number: 5 (lower is better)
Translates to: NSPVALVSAGAVRCCLSYRFQMV*KSLQNS
Trigger: TGAGTTCTGCAGTGACTTCAAGACCATTTGGAAGCG...ATATGAAAGACAGCACCTCACTGCTCCTGCAGACACAAGGGCCACCGGGGAGTT
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000081349.9
ENSMUST00000099576.9
ENSMUST00000102547.10
ENSMUST00000161731.5
CDS-3UTR CAA 90 bp TCCCCGGTGGCCCTTGTGTCTGCAGGAGCAGTGAGGTGCTGTCTTTCATATTGTGTCTGCTCTTTGAAGTaGTCACAGGGAAAGCCTTCA +
Preference number: 5 (lower is better)
Translates to: SPVALVSAGAVRCCLSYCVCSLK*SQGKPS
Trigger: TGAAGGCTTTCCCTGTGACAACTTCAAAGAGCAGAC...ACAATATGAAAGACAGCACCTCACTGCTCCTGCAGACACAAGGGCCACCGGGGA
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000099576.9
ENSMUST00000102547.10
CDS-3UTR CAA 90 bp TCCCCGGTGGCCCTTGTGTCTGCAGGAGCAGTGAGGTGCTGTCTTTCATATTGTTTTGCCGTCTGCTCTTaGAAGTTGTCACAGGGAAAG +
Preference number: 5 (lower is better)
Translates to: SPVALVSAGAVRCCLSYCFAVCS*KLSQGK
Trigger: CTTTCCCTGTGACAACTTCAAAGAGCAGACGGCAAA...ACAATATGAAAGACAGCACCTCACTGCTCCTGCAGACACAAGGGCCACCGGGGA
52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000099576.9
ENSMUST00000102547.10
CDS-3UTR CAA 90 bp AACTCCCCGGTGGCCCTTGTGTCTGCAGGAGCAGTGAGGTGCTGTCTTTCATATTTTGCCGTCTGCTCTTaGAAGTTGTCACAGGGAAAG +
Preference number: 5 (lower is better)
Translates to: NSPVALVSAGAVRCCLSYFAVCS*KLSQGK
Trigger: CTTTCCCTGTGACAACTTCAAAGAGCAGACGGCAAA...ATATGAAAGACAGCACCTCACTGCTCCTGCAGACACAAGGGCCACCGGGGAGTT
52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000099576.9
ENSMUST00000102547.10
CDS GCA 90 bp GGCTGTGCTCTGCCGGATGGCTACCATCACCACCAAGTTCCAGTTTaGTACTTGTCTCAGGTAAAGTTCTCTGAGACTCTTCAGCACAGA +
Preference number: 5 (lower is better)
Translates to: GCALPDGYHHHQVPV*YLSQVKFSETLQHR
Trigger: TCTGTGCTGAAGAGTCTCAGAGAACTTTACCTGAGACAAGTAGCAAACTGGAACTTGGTGGTGATGGTAGCCATCCGGCAGAGCACAGCC
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000081349.9
CDS GCA 90 bp CGAGACTTGGACCTCTCGAACACAGCGCGTAGTGACTCCTTCTCATaGTTCATCTTTCGCTTAAGAGCTTCCAGCTCAGAAGTGTCAGCT +
Preference number: 5 (lower is better)
Translates to: RDLDLSNTARSDSFS*FIFRLRASSSEVSA
Trigger: AGCTGACACTTCTGAGCTGGAAGCTCTTAAGCGAAAGATGAAGCATGAGAAGGAGTCACTACGCGCTGTGTTCGAGAGGTCCAAGTCTCG
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000081349.9
CDS GCA 90 bp GGGACCCAAACCCCTCCATCCTTATTGGGAAGGTCTTTTGCCGTCTaGTCTTTGAAGTTGTCACAGGGAAAGCCTTCAGAGGCAATACCT +
Preference number: 5 (lower is better)
Translates to: GTQTPPSLLGRSFAV*SLKLSQGKPSEAIP
Trigger: AGGTATTGCCTCTGAAGGCTTTCCCTGTGACAACTTCAAAGAGCAGACGGCAAAAGACCTTCCCAATAAGGATGGAGGGGTTTGGGTCCC
51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000099576.9
ENSMUST00000102547.10
ENSMUST00000238883.2
CDS CCA 90 bp GGAGAGAGCTGGGTTAAGGAGATAGTCAGCTTCTTGGGTACTATCTaGCTGCTTCTGGTTGCTTTGCTTTCAGCATCACAGGGCTTGAGG +
Preference number: 5 (lower is better)
Translates to: GESWVKEIVSFLGTI*LLLVALLSASQGLR
Trigger: CCTCAAGCCCTGTGATGCTGAAAGCAAAGCAACCAGAAGCAGCCAGATAGTACCCAAGAAGCTGACTATCTCCTTAACCCAGCTCTCTCC
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000081349.9
ENSMUST00000099576.9
ENSMUST00000102547.10
ENSMUST00000161731.5
ENSMUST00000238883.2
CDS-3UTR CAA 90 bp GCCCTTGTGTCTGCAGGAGCAGTGAGGTGCTGTCTTTCATATTGTAACTTCCTTCAGTCTCTGGTGTTCTaGCCTTCACCTGACCACCCT +
Preference number: 5 (lower is better)
Translates to: ALVSAGAVRCCLSYCNFLQSLVF*PSPDHP
Trigger: AGGGTGGTCAGGTGAAGGCAAGAACACCAGAGACTG...AAGGAAGTTACAATATGAAAGACAGCACCTCACTGCTCCTGCAGACACAAGGGC
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000081349.9
CDS-3UTR CAA 90 bp CTCCCCGGTGGCCCTTGTGTCTGCAGGAGCAGTGAGGTGCTGTCTTTCATATTGGTTTCGATTTCTTCTTaGTGCTCCCTCTTCAGATGT +
Preference number: 5 (lower is better)
Translates to: LPGGPCVCRSSEVLSFILVSISS*CSLFRC
Trigger: ACATCTGAAGAGGGAGCACAAAGAAGAAATCGAAAC...CAATATGAAAGACAGCACCTCACTGCTCCTGCAGACACAAGGGCCACCGGGGAG
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000081349.9
ENSMUST00000099576.9
ENSMUST00000102547.10
ENSMUST00000161731.5
CDS-3UTR CAA 90 bp CAACTGTTTGGAACGCCCGGCCCAGGAGATCTAACAGCCTCCTGCTGGCTTCTAGTTTCGATTTCTTCTTaGTGCTCCCTCTTCAGATGT +
Preference number: 5 (lower is better)
Translates to: QLFGTPGPGDLTASCWLLVSISS*CSLFRC
Trigger: ACATCTGAAGAGGGAGCACAAAGAAGAAATCGAAAC...TAGAAGCCAGCAGGAGGCTGTTAGATCTCCTGGGCCGGGCGTTCCAAACAGTTG
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000099576.9
CDS-3UTR CAA 90 bp GTGGCCCTTGTGTCTGCAGGAGCAGTGAGGTGCTGTCTTTCATATTGTAACTTCTCAGCATCACAGGGCTaGAGGAAGGTCTCTCTGTCT +
Preference number: 5 (lower is better)
Translates to: VALVSAGAVRCCLSYCNFSASQG*RKVSLS
Trigger: AGACAGAGAGACCTTCCTCAAGCCCTGTGATGCTGA...GAAGTTACAATATGAAAGACAGCACCTCACTGCTCCTGCAGACACAAGGGCCAC
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000081349.9
ENSMUST00000099576.9
ENSMUST00000102547.10
ENSMUST00000161731.5
CDS-3UTR CAA 90 bp GCATTGTTCTTGTGGATTGACAAGAGACTTCCCAAAGAAGGCACAGGGGACTTTAGGAGGTGCCTTCTCTaGTCTGGAATGGGGCGTGGA +
Preference number: 5 (lower is better)
Translates to: ALFLWIDKRLPKEGTGDFRRCLL*SGMGRG
Trigger: TCCACGCCCCATTCCAGACAAGAGAAGGCACCTCCT...AAAGTCCCCTGTGCCTTCTTTGGGAAGTCTCTTGTCAATCCACAAGAACAATGC
51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000081349.9
ENSMUST00000099576.9
ENSMUST00000102547.10
CDS-3UTR CAA 90 bp GCCCTTGTGTCTGCAGGAGCAGTGAGGTGCTGTCTTTCATATTGTAACTTCCTTGGAAGAGCTAGGACATaGGGAAGTGGTGGTGGAGGA +
Preference number: 5 (lower is better)
Translates to: ALVSAGAVRCCLSYCNFLGRART*GSGGGG
Trigger: TCCTCCACCACCACTTCCCAATGTCCTAGCTCTTCC...AAGGAAGTTACAATATGAAAGACAGCACCTCACTGCTCCTGCAGACACAAGGGC
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000081349.9
ENSMUST00000099576.9
ENSMUST00000102547.10
ENSMUST00000161731.5
CDS-3UTR CAA 90 bp GTGGCCCTTGTGTCTGCAGGAGCAGTGAGGTGCTGTCTTTCATATTGTAACTTCAGGAGTCCCATAAAGTaGGTGCGGCGTCTTGGCTTT +
Preference number: 5 (lower is better)
Translates to: VALVSAGAVRCCLSYCNFRSPIK*VRRLGF
Trigger: AAAGCCAAGACGCCGCACCAACTTTATGGGACTCCT...GAAGTTACAATATGAAAGACAGCACCTCACTGCTCCTGCAGACACAAGGGCCAC
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000081349.9
ENSMUST00000099576.9
ENSMUST00000102547.10
ENSMUST00000161731.5
CDS-3UTR CAA 90 bp TCCCCGGTGGCCCTTGTGTCTGCAGGAGCAGTGAGGTGCTGTCTTTCATATTGTCAAGATTCCCACAGTTaGAGATCGCTTTCCATCCAA +
Preference number: 5 (lower is better)
Translates to: SPVALVSAGAVRCCLSYCQDSHS*RSLSIQ
Trigger: TTGGATGGAAAGCGATCTCAAACTGTGGGAATCTTG...ACAATATGAAAGACAGCACCTCACTGCTCCTGCAGACACAAGGGCCACCGGGGA
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000081349.9
ENSMUST00000099576.9
ENSMUST00000102547.10
ENSMUST00000161731.5
CDS-3UTR CAA 90 bp CAGGAACTCCCCGGTGGCCCTTGTGTCTGCAGGAGCAGTGAGGTGCTGTCTTTCAAAAATTGTTCAGGTTaGTCCAGCAGTTTCAAGTCT +
Preference number: 5 (lower is better)
Translates to: QELPGGPCVCRSSEVLSFKNCSG*SSSFKS
Trigger: AGACTTGAAACTGCTGGACAAACCTGAACAATTTTT...GAAAGACAGCACCTCACTGCTCCTGCAGACACAAGGGCCACCGGGGAGTTCCTG
51% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 4 transcripts:
ENSMUST00000081349.9
ENSMUST00000099576.9
ENSMUST00000102547.10
ENSMUST00000161731.5
CDS-3UTR CAA 90 bp GCCCTTGTGTCTGCAGGAGCAGTGAGGTGCTGTCTTTCATATTGTAACTTCCTTTCCCTTGGGGACTCCTaGCACACCAGCTTCATCTGT +
Preference number: 5 (lower is better)
Translates to: ALVSAGAVRCCLSYCNFLSLGDS*HTSFIC
Trigger: ACAGATGAAGCTGGTGTGCAAGGAGTCCCCAAGGGA...AAGGAAGTTACAATATGAAAGACAGCACCTCACTGCTCCTGCAGACACAAGGGC
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000081349.9
ENSMUST00000099576.9
ENSMUST00000102547.10
ENSMUST00000161731.5
CDS-3UTR CAA 90 bp CTCCCCGGTGGCCCTTGTGTCTGCAGGAGCAGTGAGGTGCTGTCTTTCATATTGCCTTCTCTCCAGTCTTaGGCTTCATTCCAAAATATC +
Preference number: 5 (lower is better)
Translates to: LPGGPCVCRSSEVLSFILPSLQS*ASFQNI
Trigger: GATATTTTGGAATGAAGCCAAAGACTGGAGAGAAGG...CAATATGAAAGACAGCACCTCACTGCTCCTGCAGACACAAGGGCCACCGGGGAG
51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000081349.9
ENSMUST00000099576.9
ENSMUST00000102547.10
ENSMUST00000161731.5
CDS-3UTR CAA 90 bp GACTTCCCAAAGAAGGCACAGGGGACTTTCTGCAGATGGCCTCAGAAGGAGATGCGCTTCCAAATGGTCTaGAAGTCACTGCAGAACTCA +
Preference number: 5 (lower is better)
Translates to: DFPKKAQGTFCRWPQKEMRFQMV*KSLQNS
Trigger: TGAGTTCTGCAGTGACTTCAAGACCATTTGGAAGCG...CATCTCCTTCTGAGGCCATCTGCAGAAAGTCCCCTGTGCCTTCTTTGGGAAGTC
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000081349.9
ENSMUST00000099576.9
ENSMUST00000102547.10
CDS-3UTR CAA 90 bp CTCCCCGGTGGCCCTTGTGTCTGCAGGAGCAGTGAGGTGCTGTCTTTCATATTGAGAGTTACAGTGCCCTaGTATGAAAATCCTCTGACT +
Preference number: 5 (lower is better)
Translates to: LPGGPCVCRSSEVLSFILRVTVP*YENPLT
Trigger: AGTCAGAGGATTTTCATACAAGGGCACTGTAACTCT...CAATATGAAAGACAGCACCTCACTGCTCCTGCAGACACAAGGGCCACCGGGGAG
51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000099576.9
ENSMUST00000102547.10
ENSMUST00000161731.5
CDS-3UTR CAA 90 bp GTGGCCCTTGTGTCTGCAGGAGCAGTGAGGTGCTGTCTTTCATATTGTAACTTCAGTTCTCTGCGCCAGTaGCCAGCACTCTGGAAATAC +
Preference number: 5 (lower is better)
Translates to: VALVSAGAVRCCLSYCNFSSLRQ*PALWKY
Trigger: GTATTTCCAGAGTGCTGGCAACTGGCGCAGAGAACT...GAAGTTACAATATGAAAGACAGCACCTCACTGCTCCTGCAGACACAAGGGCCAC
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000099576.9
ENSMUST00000102547.10
ENSMUST00000161731.5
CDS-3UTR CAA 90 bp CCGGTGGCCCTTGTGTCTGCAGGAGCAGTGAGGTGCTGTCTTTCATATTGTAACTCACTCTCTATCACCTaGCGGAGAACCTTGTTCACA +
Preference number: 5 (lower is better)
Translates to: PVALVSAGAVRCCLSYCNSLSIT*RRTLFT
Trigger: TGTGAACAAGGTTCTCCGCAAGGTGATAGAGAGTGA...GTTACAATATGAAAGACAGCACCTCACTGCTCCTGCAGACACAAGGGCCACCGG
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000099576.9
ENSMUST00000102547.10
ENSMUST00000161731.5
CDS-3UTR CAA 90 bp CTCTTGGGGATCACCATGTACCTCTTTTCTCATGACAAGGGTATATACTGGAAGGTGGACTGGGACACCTaGGAGACAGAGGCGAGGGAA +
Preference number: 5 (lower is better)
Translates to: LLGITMYLFSHDKGIYWKVDWDT*ETEARE
Trigger: TTCCCTCGCCTCTGTCTCCAAGGTGTCCCAGTCCAC...CTTCCAGTATATACCCTTGTCATGAGAAAAGAGGTACATGGTGATCCCCAAGAG
51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000099576.9
ENSMUST00000102547.10
CDS TCA 90 bp AAACCCCTCCATCCTTATTGGGAAGGTCTTTTGCCGTCTGCTCTTTaGAGTTGTCACAGGGAAAGCCTTCAGAGGCAATACCTGGTGGCA +
Preference number: 5 (lower is better)
Translates to: KPLHPYWEGLLPSAL*SCHRESLQRQYLVA
Trigger: TGCCACCAGGTATTGCCTCTGAAGGCTTTCCCTGTGACAACTTCAAAGAGCAGACGGCAAAAGACCTTCCCAATAAGGATGGAGGGGTTT
50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000099576.9
ENSMUST00000102547.10
CDS CCA 90 bp ACTAGGGTACTCATTAAAAACAACTTCTCCCTCACTAGGCAGTGGTaGGAGCAGAAGGATCCTATGATGCTGCTGTGGACTGGGACACCT +
Preference number: 5 (lower is better)
Translates to: TRVLIKNNFSLTRQW*EQKDPMMLLWTGTP
Trigger: AGGTGTCCCAGTCCACAGCAGCATCATAGGATCCTTCTGCTCCCACCACTGCCTAGTGAGGGAGAAGTTGTTTTTAATGAGTACCCTAGT
50% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000099576.9
ENSMUST00000102547.10
ENSMUST00000161731.5
CDS-3UTR CAA 90 bp AACTCCCCGGTGGCCCTTGTGTCTGCAGGAGCAGTGAGGTGCTGTCTTTCATATGTTCCAGTTTGCTACTaGTCTCAGGTAAAGTTCTCT +
Preference number: 5 (lower is better)
Translates to: NSPVALVSAGAVRCCLSYVPVCY*SQVKFS
Trigger: AGAGAACTTTACCTGAGACAAGTAGCAAACTGGAAC...ATATGAAAGACAGCACCTCACTGCTCCTGCAGACACAAGGGCCACCGGGGAGTT
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000081349.9
CDS-3UTR CAA 90 bp GCATTGTTCTTGTGGATTGACAAGAGACTTCCCAAAGAAGGCACAGGGGACTTTCTGTGTCCTTTGTCTTaGGGGGTGGCCAGACAGCTT +
Preference number: 5 (lower is better)
Translates to: ALFLWIDKRLPKEGTGDFLCPLS*GVARQL
Trigger: AAGCTGTCTGGCCACCCCCAAAGACAAAGGACACAG...AAAGTCCCCTGTGCCTTCTTTGGGAAGTCTCTTGTCAATCCACAAGAACAATGC
50% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000081349.9
ENSMUST00000099576.9
ENSMUST00000102547.10
CDS-3UTR CAA 90 bp CTTGTGTCTGCAGGAGCAGTGAGGTGCTGTCTTTCATATTGTAACTTCCTTCTGCTGTGTCCTTTGTCTTaGGGGGTGGCCAGACAGCTT +
Preference number: 5 (lower is better)
Translates to: LVSAGAVRCCLSYCNFLLLCPLS*GVARQL
Trigger: AAGCTGTCTGGCCACCCCCAAAGACAAAGGACACAG...CAGAAGGAAGTTACAATATGAAAGACAGCACCTCACTGCTCCTGCAGACACAAG
50% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000081349.9
ENSMUST00000099576.9
ENSMUST00000102547.10
CDS-3UTR CAA 90 bp ATGGCCTCAGAAGGAGATGAGCAAATGTCCCTAACTAGTCTTTCAGGAACTCCCTCAGCATCACAGGGCTaGAGGAAGGTCTCTCTGTCT +
Preference number: 5 (lower is better)
Translates to: MASEGDEQMSLTSLSGTPSASQG*RKVSLS
Trigger: AGACAGAGAGACCTTCCTCAAGCCCTGTGATGCTGA...GGGAGTTCCTGAAAGACTAGTTAGGGACATTTGCTCATCTCCTTCTGAGGCCAT
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000081349.9
ENSMUST00000099576.9
ENSMUST00000102547.10
ENSMUST00000161731.5
CDS-3UTR CAA 90 bp AACTCCCCGGTGGCCCTTGTGTCTGCAGGAGCAGTGAGGTGCTGTCTTTCATATAGTTGGTGCGGCGTCTaGGCTTTTATCATTTATTTG +
Preference number: 5 (lower is better)
Translates to: NSPVALVSAGAVRCCLSYSWCGV*AFIIYL
Trigger: CAAATAAATGATAAAAGCCAAGACGCCGCACCAACT...ATATGAAAGACAGCACCTCACTGCTCCTGCAGACACAAGGGCCACCGGGGAGTT
50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000081349.9
ENSMUST00000099576.9
ENSMUST00000102547.10
ENSMUST00000161731.5
CDS-3UTR CAA 90 bp ATGGCCTCAGAAGGAGATGAGCAAATGTCCCTAACTAGTCTTTCAGGAACTCCCAGGAGTCCCATAAAGTaGGTGCGGCGTCTTGGCTTT +
Preference number: 5 (lower is better)
Translates to: MASEGDEQMSLTSLSGTPRSPIK*VRRLGF
Trigger: AAAGCCAAGACGCCGCACCAACTTTATGGGACTCCT...GGGAGTTCCTGAAAGACTAGTTAGGGACATTTGCTCATCTCCTTCTGAGGCCAT
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000081349.9
ENSMUST00000099576.9
ENSMUST00000102547.10
ENSMUST00000161731.5
CDS-3UTR CAA 90 bp GTGGCCCTTGTGTCTGCAGGAGCAGTGAGGTGCTGTCTTTCATATTGTAACTTCGCACGTTCGGCAAAATaGGGAATCTGGGCTAACTCA +
Preference number: 5 (lower is better)
Translates to: VALVSAGAVRCCLSYCNFARSAK*GIWANS
Trigger: TGAGTTAGCCCAGATTCCCAATTTTGCCGAACGTGC...GAAGTTACAATATGAAAGACAGCACCTCACTGCTCCTGCAGACACAAGGGCCAC
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000081349.9
ENSMUST00000099576.9
ENSMUST00000102547.10
ENSMUST00000161731.5
CDS-3UTR CAA 90 bp CTTGTGTCTGCAGGAGCAGTGAGGTGCTGTCTTTCATATTGTAACTTCCTTCTGTCCCTTGGGGACTCCTaGCACACCAGCTTCATCTGT +
Preference number: 5 (lower is better)
Translates to: LVSAGAVRCCLSYCNFLLSLGDS*HTSFIC
Trigger: ACAGATGAAGCTGGTGTGCAAGGAGTCCCCAAGGGA...CAGAAGGAAGTTACAATATGAAAGACAGCACCTCACTGCTCCTGCAGACACAAG
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000081349.9
ENSMUST00000099576.9
ENSMUST00000102547.10
ENSMUST00000161731.5
CDS-3UTR CAA 90 bp GCATTGTTCTTGTGGATTGACAAGAGACTTCCCAAAGAAGGCACAGGGGACTTTTCCCTTGGGGACTCCTaGCACACCAGCTTCATCTGT +
Preference number: 5 (lower is better)
Translates to: ALFLWIDKRLPKEGTGDFSLGDS*HTSFIC
Trigger: ACAGATGAAGCTGGTGTGCAAGGAGTCCCCAAGGGA...AAAGTCCCCTGTGCCTTCTTTGGGAAGTCTCTTGTCAATCCACAAGAACAATGC
50% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 3 transcripts:
ENSMUST00000081349.9
ENSMUST00000099576.9
ENSMUST00000102547.10
CDS-3UTR CAA 90 bp GGATCACCATGTACCTCTTTTCTCATGACAAGGGTATATACTGGAAGGCTTAGAGCTGCAGGTACTCCCTaGGGGACTCCTTGCACACCA +
Preference number: 5 (lower is better)
Translates to: GSPCTSFLMTRVYTGRLRAAGTP*GTPCTP
Trigger: TGGTGTGCAAGGAGTCCCCAAGGGAGTACCTGCAGC...TCTAAGCCTTCCAGTATATACCCTTGTCATGAGAAAAGAGGTACATGGTGATCC
50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000081349.9
ENSMUST00000099576.9
ENSMUST00000102547.10
CDS-3UTR CAA 90 bp AACTCCCCGGTGGCCCTTGTGTCTGCAGGAGCAGTGAGGTGCTGTCTTTCATATTTTGTGGGAGTCTGTTaGAAAAATATGTCGCCTGGA +
Preference number: 5 (lower is better)
Translates to: NSPVALVSAGAVRCCLSYFVGVC*KNMSPG
Trigger: TCCAGGCGACATATTTTTCAAACAGACTCCCACAAA...ATATGAAAGACAGCACCTCACTGCTCCTGCAGACACAAGGGCCACCGGGGAGTT
50% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 3 transcripts:
ENSMUST00000099576.9
ENSMUST00000102547.10
ENSMUST00000161731.5
CDS-3UTR CAA 90 bp GCCTCTGTGATCCCAGGTGGTGCTAAGAAAAACCAAACCAAGCCAACCCATAAGGGGCTTTTTGTTCTCTaGGGTGCTCCTCCTAATGAG +
Preference number: 5 (lower is better)
Translates to: ASVIPGGAKKNQTKPTHKGLFVL*GAPPNE
Trigger: CTCATTAGGAGGAGCACCCAAGAGAACAAAAAGCCC...CTTATGGGTTGGCTTGGTTTGGTTTTTCTTAGCACCACCTGGGATCACAGAGGC
50% GC, longest homopolymer 5 nt, total homopolymer stretches 14 nt.
Matches the following 1 transcripts:
ENSMUST00000099576.9
CDS-3UTR CAA 90 bp CTCTTGGGGATCACCATGTACCTCTTTTCTCATGACAAGGGTATATACTGGAAGGGTGTCCTGAGGATGTaGGCTGGGCAGCTCTCTCTT +
Preference number: 5 (lower is better)
Translates to: LLGITMYLFSHDKGIYWKGVLRM*AGQLSL
Trigger: AAGAGAGAGCTGCCCAGCCAACATCCTCAGGACACC...CTTCCAGTATATACCCTTGTCATGAGAAAAGAGGTACATGGTGATCCCCAAGAG
50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000099576.9
ENSMUST00000102547.10
CDS-3UTR CAA 90 bp GCCCTTGTGTCTGCAGGAGCAGTGAGGTGCTGTCTTTCATATTGTAACTTCCTTTCCTCTCCAATGACTTaGACTTCCGAGTCCTGCTGC +
Preference number: 5 (lower is better)
Translates to: ALVSAGAVRCCLSYCNFLSSPMT*TSESCC
Trigger: GCAGCAGGACTCGGAAGTCAAAGTCATTGGAGAGGA...AAGGAAGTTACAATATGAAAGACAGCACCTCACTGCTCCTGCAGACACAAGGGC
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000099576.9
ENSMUST00000102547.10
ENSMUST00000161731.5
CDS GCA 90 bp AACAACAGTGGTGGGCTTTTGGGTATCAAGGCTACTTTCTTCTTCTaGCTCCTGGTCTCCATCTTCAGAGTCAGAATCACTGGTGGTGTG +
Preference number: 5 (lower is better)
Translates to: NNSGGLLGIKATFFF*LLVSIFRVRITGGV
Trigger: CACACCACCAGTGATTCTGACTCTGAAGATGGAGACCAGGAGGCAGAAGAAGAAAGTAGCCTTGATACCCAAAAGCCCACCACTGTTGTT
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000081349.9
CDS GCA 90 bp TTTTTGGCTTTCTTGAAGAACTCCTCCAGTTTGTCCTTGAAAGGCTaGAGGTACTCCCTTGGGGACTCCTTGCACACCAGCTTCATCTGT +
Preference number: 5 (lower is better)
Translates to: FLAFLKNSSSLSLKG*RYSLGDSLHTSFIC
Trigger: ACAGATGAAGCTGGTGTGCAAGGAGTCCCCAAGGGAGTACCTGCAGCCTTTCAAGGACAAACTGGAGGAGTTCTTCAAGAAAGCCAAAAA
49% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 5 transcripts:
ENSMUST00000081349.9
ENSMUST00000099576.9
ENSMUST00000102547.10
ENSMUST00000161731.5
ENSMUST00000238883.2
CDS CCA 90 bp TCTGGTCCAATACAAAGGTTTCATAGGACAGCTGGGCTCAATGGCTaGTTTACGAGGATACTGGCTGGAAGAAGAGCTGAGTCCAAAGGA +
Preference number: 5 (lower is better)
Translates to: SGPIQRFHRTAGLNG*FTRILAGRRAESKG
Trigger: TCCTTTGGACTCAGCTCTTCTTCCAGCCAGTATCCTCGTAAACCAGCCATTGAGCCCAGCTGTCCTATGAAACCTTTGTATTGGACCAGA
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000081349.9
ENSMUST00000099576.9
ENSMUST00000102547.10
ENSMUST00000161731.5
ENSMUST00000238883.2
CDS CCA 90 bp TCTACTAGGGTACTCATTAAAAACAACTTCTCCCTCACTAGGCAGTaGTGGGAGCAGAAGGATCCTATGATGCTGCTGTGGACTGGGACA +
Preference number: 5 (lower is better)
Translates to: STRVLIKNNFSLTRQ*WEQKDPMMLLWTGT
Trigger: TGTCCCAGTCCACAGCAGCATCATAGGATCCTTCTGCTCCCACCACTGCCTAGTGAGGGAGAAGTTGTTTTTAATGAGTACCCTAGTAGA
49% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000099576.9
ENSMUST00000102547.10
ENSMUST00000161731.5
CDS-3UTR CAA 90 bp CTCTTGGGGATCACCATGTACCTCTTTTCTCATGACAAGGGTATATACTGGAAGCAGGGGAAGAGGTGTTaGATCTGCCTTTCCCCTGAC +
Preference number: 5 (lower is better)
Translates to: LLGITMYLFSHDKGIYWKQGKRC*ICLSPD
Trigger: GTCAGGGGAAAGGCAGATCAAACACCTCTTCCCCTG...CTTCCAGTATATACCCTTGTCATGAGAAAAGAGGTACATGGTGATCCCCAAGAG
49% GC, longest homopolymer 4 nt, total homopolymer stretches 16 nt.
Matches the following 1 transcripts:
ENSMUST00000081349.9
CDS-3UTR CAA 90 bp AGACTTCCCAAAGAAGGCACAGGGGACTTTCTGCAGATGGCCTCAGAAGGAGATCCACCAAGTTCCAGTTaGCTACTTGTCTCAGGTAAA +
Preference number: 5 (lower is better)
Translates to: RLPKEGTGDFLQMASEGDPPSSS*LLVSGK
Trigger: TTTACCTGAGACAAGTAGCAAACTGGAACTTGGTGG...ATCTCCTTCTGAGGCCATCTGCAGAAAGTCCCCTGTGCCTTCTTTGGGAAGTCT
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000081349.9
CDS-3UTR CAA 90 bp GCAGCATCCCTCAAGCCAACACAGCTCAACTATGAATTGCCATATTCATGGTCTCTGCTTCTGGTTGCTTaGCTTTCAGCATCACAGGGC +
Preference number: 5 (lower is better)
Translates to: AASLKPTQLNYELPYSWSLLLVA*LSASQG
Trigger: GCCCTGTGATGCTGAAAGCAAAGCAACCAGAAGCAG...AGACCATGAATATGGCAATTCATAGTTGAGCTGTGTTGGCTTGAGGGATGCTGC
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000099576.9
CDS-3UTR CAA 90 bp TGGCTTCTACAGACACCAGGCACACAGGTGGTGCACATATATACACGTAGGCAAGAGATAGTCAGCTTCTaGGGTACTATCTGGCTGCTT +
Preference number: 5 (lower is better)
Translates to: WLLQTPGTQVVHIYTRRQEIVSF*GTIWLL
Trigger: AAGCAGCCAGATAGTACCCAAGAAGCTGACTATCTC...TTGCCTACGTGTATATATGTGCACCACCTGTGTGCCTGGTGTCTGTAGAAGCCA
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000099576.9
CDS-3UTR CAA 90 bp AAACCACGTGACAATAACTTTCCTTCAAACCACAGAAAGACAGCTAGCACCTGTAGGAGGTGCCTTCTCTaGTCTGGAATGGGGCGTGGA +
Preference number: 5 (lower is better)
Translates to: KPRDNNFPSNHRKTASTCRRCLL*SGMGRG
Trigger: TCCACGCCCCATTCCAGACAAGAGAAGGCACCTCCT...ACAGGTGCTAGCTGTCTTTCTGTGGTTTGAAGGAAAGTTATTGTCACGTGGTTT
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000099576.9
CDS-3UTR CAA 90 bp TTCCCAAAGAAGGCACAGGGGACTTTCTGCAGATGGCCTCAGAAGGAGATGAGCCGACTTTTGACGTCTTaGAGTTTGGGCAGAATTTCT +
Preference number: 5 (lower is better)
Translates to: FPKKAQGTFCRWPQKEMSRLLTS*SLGRIS
Trigger: AGAAATTCTGCCCAAACTCAAAGACGTCAAAAGTCG...GCTCATCTCCTTCTGAGGCCATCTGCAGAAAGTCCCCTGTGCCTTCTTTGGGAA
49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000081349.9
ENSMUST00000099576.9
ENSMUST00000102547.10
CDS-3UTR CAA 90 bp ATGGCCTCAGAAGGAGATGAGCAAATGTCCCTAACTAGTCTTTCAGGAACTCCCCCATTGTCCCGACTTTaGACGTCTTTGAGTTTGGGC +
Preference number: 5 (lower is better)
Translates to: MASEGDEQMSLTSLSGTPPLSRL*TSLSLG
Trigger: GCCCAAACTCAAAGACGTCAAAAGTCGGGACAATGG...GGGAGTTCCTGAAAGACTAGTTAGGGACATTTGCTCATCTCCTTCTGAGGCCAT
49% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 4 transcripts:
ENSMUST00000081349.9
ENSMUST00000099576.9
ENSMUST00000102547.10
ENSMUST00000161731.5
CDS-3UTR CAA 90 bp AGACTTCCCAAAGAAGGCACAGGGGACTTTCTGCAGATGGCCTCAGAAGGAGATAGACTAGCGGTGGGATaGATTTTCTTTGTCTCCACT +
Preference number: 5 (lower is better)
Translates to: RLPKEGTGDFLQMASEGDRLAVG*IFFVST
Trigger: AGTGGAGACAAAGAAAATCAATCCCACCGCTAGTCT...ATCTCCTTCTGAGGCCATCTGCAGAAAGTCCCCTGTGCCTTCTTTGGGAAGTCT
49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000081349.9
ENSMUST00000099576.9
ENSMUST00000102547.10
CDS-3UTR CAA 90 bp CCGGTGGCCCTTGTGTCTGCAGGAGCAGTGAGGTGCTGTCTTTCATATTGTAACAGAGTTACAGTGCCCTaGTATGAAAATCCTCTGACT +
Preference number: 5 (lower is better)
Translates to: PVALVSAGAVRCCLSYCNRVTVP*YENPLT
Trigger: AGTCAGAGGATTTTCATACAAGGGCACTGTAACTCT...GTTACAATATGAAAGACAGCACCTCACTGCTCCTGCAGACACAAGGGCCACCGG
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000099576.9
ENSMUST00000102547.10
ENSMUST00000161731.5
CDS-3UTR CAA 90 bp CTCCCCGGTGGCCCTTGTGTCTGCAGGAGCAGTGAGGTGCTGTCTTTCATATTGTTATGGAAAGCGTTATaGGATCTGTCTAGAGTTACA +
Preference number: 5 (lower is better)
Translates to: LPGGPCVCRSSEVLSFILLWKAL*DLSRVT
Trigger: TGTAACTCTAGACAGATCCAATAACGCTTTCCATAA...CAATATGAAAGACAGCACCTCACTGCTCCTGCAGACACAAGGGCCACCGGGGAG
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000099576.9
ENSMUST00000102547.10
ENSMUST00000161731.5
CDS-3UTR CAA 90 bp CTTGTGTCTGCAGGAGCAGTGAGGTGCTGTCTTTCATATTGTAACTTCCTTCTGAGTTCTCTGCGCCAGTaGCCAGCACTCTGGAAATAC +
Preference number: 5 (lower is better)
Translates to: LVSAGAVRCCLSYCNFLLSSLRQ*PALWKY
Trigger: GTATTTCCAGAGTGCTGGCAACTGGCGCAGAGAACT...CAGAAGGAAGTTACAATATGAAAGACAGCACCTCACTGCTCCTGCAGACACAAG
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000099576.9
ENSMUST00000102547.10
ENSMUST00000161731.5
CDS-3UTR CAA 90 bp GCCCTTGTGTCTGCAGGAGCAGTGAGGTGCTGTCTTTCATATTGTAACTTCCTTGGGCTTTTTGTTCTCTaGGGTGCTCCTCCTAATGAG +
Preference number: 5 (lower is better)
Translates to: ALVSAGAVRCCLSYCNFLGLFVL*GAPPNE
Trigger: CTCATTAGGAGGAGCACCCAAGAGAACAAAAAGCCC...AAGGAAGTTACAATATGAAAGACAGCACCTCACTGCTCCTGCAGACACAAGGGC
49% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000099576.9
ENSMUST00000102547.10
ENSMUST00000161731.5
CDS-3UTR CAA 90 bp CTTGTGTCTGCAGGAGCAGTGAGGTGCTGTCTTTCATATTGTAACTTCCTTCTGTCCTCTCCAATGACTTaGACTTCCGAGTCCTGCTGC +
Preference number: 5 (lower is better)
Translates to: LVSAGAVRCCLSYCNFLLSSPMT*TSESCC
Trigger: GCAGCAGGACTCGGAAGTCAAAGTCATTGGAGAGGA...CAGAAGGAAGTTACAATATGAAAGACAGCACCTCACTGCTCCTGCAGACACAAG
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000099576.9
ENSMUST00000102547.10
ENSMUST00000161731.5
CDS-3UTR CAA 90 bp CCAACACAGCTCAACTATGAATTGCCATATTCATGGTCTTCTGATATTCTGCTCGAGGACCGCAATGACTaGATCCCTGGCTGCTCCTCC +
Preference number: 5 (lower is better)
Translates to: PTQLNYELPYSWSSDILLEDRND*IPGCSS
Trigger: GGAGGAGCAGCCAGGGATCAAGTCATTGCGGTCCTC...GAGCAGAATATCAGAAGACCATGAATATGGCAATTCATAGTTGAGCTGTGTTGG
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000099576.9
CDS CCA 90 bp CTTGCCGTCATGATGCGCCCTAACTATTCGTTTTACTGGGGCAGATaGTTCCTGAATCTTGGCCACCACTTTGGAAACAGGTTTCTTACT +
Preference number: 5 (lower is better)
Translates to: LAVMMRPNYSFYWGR*FLNLGHHFGNRFLT
Trigger: AGTAAGAAACCTGTTTCCAAAGTGGTGGCCAAGATTCAGGAACCATCTGCCCCAGTAAAACGAATAGTTAGGGCGCATCATGACGGCAAG
48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000099576.9
ENSMUST00000102547.10
ENSMUST00000161731.5
CDS-3UTR CAA 90 bp CTTGTGTCTGCAGGAGCAGTGAGGTGCTGTCTTTCATATTGTAACTTCCTTCTGTCTGGCTGCTTCTGGTaGCTTTGCTTTCAGCATCAC +
Preference number: 5 (lower is better)
Translates to: LVSAGAVRCCLSYCNFLLSGCFW*LCFQHH
Trigger: GTGATGCTGAAAGCAAAGCAACCAGAAGCAGCCAGA...CAGAAGGAAGTTACAATATGAAAGACAGCACCTCACTGCTCCTGCAGACACAAG
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000081349.9
ENSMUST00000099576.9
ENSMUST00000102547.10
ENSMUST00000161731.5
CDS-3UTR CAA 90 bp ATGGCCTCAGAAGGAGATGAGCAAATGTCCCTAACTAGTCTTTCAGGAACTCCCGAGATAGTCAGCTTCTaGGGTACTATCTGGCTGCTT +
Preference number: 5 (lower is better)
Translates to: MASEGDEQMSLTSLSGTPEIVSF*GTIWLL
Trigger: AAGCAGCCAGATAGTACCCAAGAAGCTGACTATCTC...GGGAGTTCCTGAAAGACTAGTTAGGGACATTTGCTCATCTCCTTCTGAGGCCAT
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000081349.9
ENSMUST00000099576.9
ENSMUST00000102547.10
ENSMUST00000161731.5
CDS-3UTR CAA 90 bp ATGGCCTCAGAAGGAGATGAGCAAATGTCCCTAACTAGTCTTTCAGGAACTCCCTGTCTTTGCTGTCTTTaGAGGGAGAGAGCTGGGTTA +
Preference number: 5 (lower is better)
Translates to: MASEGDEQMSLTSLSGTPCLCCL*RERAGL
Trigger: TAACCCAGCTCTCTCCCTCAAAAGACAGCAAAGACA...GGGAGTTCCTGAAAGACTAGTTAGGGACATTTGCTCATCTCCTTCTGAGGCCAT
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000081349.9
ENSMUST00000099576.9
ENSMUST00000102547.10
ENSMUST00000161731.5
CDS-3UTR CAA 90 bp AGACTTCCCAAAGAAGGCACAGGGGACTTTCTGCAGATGGCCTCAGAAGGAGATAGTTGGTGCGGCGTCTaGGCTTTTATCATTTATTTG +
Preference number: 5 (lower is better)
Translates to: RLPKEGTGDFLQMASEGDSWCGV*AFIIYL
Trigger: CAAATAAATGATAAAAGCCAAGACGCCGCACCAACT...ATCTCCTTCTGAGGCCATCTGCAGAAAGTCCCCTGTGCCTTCTTTGGGAAGTCT
48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000081349.9
ENSMUST00000099576.9
ENSMUST00000102547.10
CDS-3UTR CAA 90 bp GTGGCCCTTGTGTCTGCAGGAGCAGTGAGGTGCTGTCTTTCATATTGTAACTTCCAAGATTCCCACAGTTaGAGATCGCTTTCCATCCAA +
Preference number: 5 (lower is better)
Translates to: VALVSAGAVRCCLSYCNFQDSHS*RSLSIQ
Trigger: TTGGATGGAAAGCGATCTCAAACTGTGGGAATCTTG...GAAGTTACAATATGAAAGACAGCACCTCACTGCTCCTGCAGACACAAGGGCCAC
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000081349.9
ENSMUST00000099576.9
ENSMUST00000102547.10
ENSMUST00000161731.5
CDS-3UTR CAA 90 bp AACTCCCCGGTGGCCCTTGTGTCTGCAGGAGCAGTGAGGTGCTGTCTTTCATATAAAAATTGTTCAGGTTaGTCCAGCAGTTTCAAGTCT +
Preference number: 5 (lower is better)
Translates to: NSPVALVSAGAVRCCLSYKNCSG*SSSFKS
Trigger: AGACTTGAAACTGCTGGACAAACCTGAACAATTTTT...ATATGAAAGACAGCACCTCACTGCTCCTGCAGACACAAGGGCCACCGGGGAGTT
48% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 4 transcripts:
ENSMUST00000081349.9
ENSMUST00000099576.9
ENSMUST00000102547.10
ENSMUST00000161731.5
CDS-3UTR CAA 90 bp GCATTGTTCTTGTGGATTGACAAGAGACTTCCCAAAGAAGGCACAGGGGACTTTGCACGTTCGGCAAAATaGGGAATCTGGGCTAACTCA +
Preference number: 5 (lower is better)
Translates to: ALFLWIDKRLPKEGTGDFARSAK*GIWANS
Trigger: TGAGTTAGCCCAGATTCCCAATTTTGCCGAACGTGC...AAAGTCCCCTGTGCCTTCTTTGGGAAGTCTCTTGTCAATCCACAAGAACAATGC
48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000081349.9
ENSMUST00000099576.9
ENSMUST00000102547.10
CDS-3UTR CAA 90 bp AACTCCCCGGTGGCCCTTGTGTCTGCAGGAGCAGTGAGGTGCTGTCTTTCATATTTGACGTCTTTGAGTTaGGGCAGAATTTCTAAACTA +
Preference number: 5 (lower is better)
Translates to: NSPVALVSAGAVRCCLSYLTSLS*GRISKL
Trigger: TAGTTTAGAAATTCTGCCCAAACTCAAAGACGTCAA...ATATGAAAGACAGCACCTCACTGCTCCTGCAGACACAAGGGCCACCGGGGAGTT
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000081349.9
ENSMUST00000099576.9
ENSMUST00000102547.10
ENSMUST00000161731.5
CDS-3UTR CAA 90 bp CTTGTGTCTGCAGGAGCAGTGAGGTGCTGTCTTTCATATTGTAACTTCCTTCTGAAGAACTCCTCCAGTTaGTCCTTGAAAGGCTGCAGG +
Preference number: 5 (lower is better)
Translates to: LVSAGAVRCCLSYCNFLLKNSSS*SLKGCR
Trigger: CCTGCAGCCTTTCAAGGACAAACTGGAGGAGTTCTT...CAGAAGGAAGTTACAATATGAAAGACAGCACCTCACTGCTCCTGCAGACACAAG
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000081349.9
ENSMUST00000099576.9
ENSMUST00000102547.10
ENSMUST00000161731.5
CDS-3UTR CAA 90 bp GCCTCTGTGATCCCAGGTGGTGCTAAGAAAAACCAAACCAAGCCAACCCATAAGAGACTAGCGGTGGGATaGATTTTCTTTGTCTCCACT +
Preference number: 5 (lower is better)
Translates to: ASVIPGGAKKNQTKPTHKRLAVG*IFFVST
Trigger: AGTGGAGACAAAGAAAATCAATCCCACCGCTAGTCT...CTTATGGGTTGGCTTGGTTTGGTTTTTCTTAGCACCACCTGGGATCACAGAGGC
48% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000099576.9
CDS TCA 90 bp GTCTTGCTGTTACTAATGCGTGCTCACCCCGGATGTGAAATGTCTTaGGTTCAAACTGAGCCTGCAGGGTTTCGATTTCTTCTTTGTGCT +
Preference number: 5 (lower is better)
Translates to: VLLLLMRAHPGCEMS*VQTEPAGFRFLLCA
Trigger: AGCACAAAGAAGAAATCGAAACCCTGCAGGCTCAGTTTGAACTCAAGACATTTCACATCCGGGGTGAGCACGCATTAGTAACAGCAAGAC
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000081349.9
ENSMUST00000099576.9
ENSMUST00000102547.10
ENSMUST00000161731.5
ENSMUST00000238883.2
CDS GCA 90 bp CCAAAAGCCAGAATGAGAGCTAAGATATCCTTCACACTCTTCATGTaGAACAAGCCCTTCGAGGCCCGTGTGACAATCTCTACTTTTCGA +
Preference number: 5 (lower is better)
Translates to: PKARMRAKISFTLFM*NKPFEARVTISTFR
Trigger: TCGAAAAGTAGAGATTGTCACACGGGCCTCGAAGGGCTTGTTGCACATGAAGAGTGTGAAGGATATCTTAGCTCTCATTCTGGCTTTTGG
47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 5 transcripts:
ENSMUST00000081349.9
ENSMUST00000099576.9
ENSMUST00000102547.10
ENSMUST00000161731.5
ENSMUST00000238883.2
CDS CCA 90 bp CTCTGTCTTTGGGCTCTTGAGAAGGTTCACATAAAACAACAGTGGTaGGCTTTTGGGTATCAAGGCTACTTTCTTCTTCTGCCTCCTGGT +
Preference number: 5 (lower is better)
Translates to: LCLWALEKVHIKQQW*AFGYQGYFLLLPPG
Trigger: ACCAGGAGGCAGAAGAAGAAAGTAGCCTTGATACCCAAAAGCCCACCACTGTTGTTTTATGTGAACCTTCTCAAGAGCCCAAAGACAGAG
47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000081349.9
CDS CCA 90 bp CTGCTCTGTCTTTGGGCTCTTGAGAAGGTTCACATAAAACAACAGTaGTGGGCTTTTGGGTATCAAGGCTACTTTCTTCTTCTGCCTCCT +
Preference number: 5 (lower is better)
Translates to: LLCLWALEKVHIKQQ*WAFGYQGYFLLLPP
Trigger: AGGAGGCAGAAGAAGAAAGTAGCCTTGATACCCAAAAGCCCACCACTGTTGTTTTATGTGAACCTTCTCAAGAGCCCAAAGACAGAGCAG
47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000081349.9
CDS CCA 90 bp GAAGGTCTCTCTGTCTGTCTGGATGCACACATTTCTGAAAGCCTTTaGAGAGCAGTCATCATCTGTGGAAATGCACACATCTCTCATCTC +
Preference number: 5 (lower is better)
Translates to: EGLSVCLDAHISESL*RAVIICGNAHISHL
Trigger: GAGATGAGAGATGTGTGCATTTCCACAGATGATGACTGCTCTCCAAAGGCTTTCAGAAATGTGTGCATCCAGACAGACAGAGAGACCTTC
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000081349.9
ENSMUST00000099576.9
ENSMUST00000102547.10
ENSMUST00000161731.5
ENSMUST00000238883.2
CDS CCA 90 bp GCCCTGAAGATTATGCACTGGGCACGTTCGGCAAAATTGGGAATCTaGGCTAACTCATGCAAAAATTGTTCAGGTTTGTCCAGCAGTTTC +
Preference number: 5 (lower is better)
Translates to: ALKIMHWARSAKLGI*ANSCKNCSGLSSSF
Trigger: GAAACTGCTGGACAAACCTGAACAATTTTTGCATGAGTTAGCCCAGATTCCCAATTTTGCCGAACGTGCCCAGTGCATAATCTTCAGGGC
47% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 5 transcripts:
ENSMUST00000081349.9
ENSMUST00000099576.9
ENSMUST00000102547.10
ENSMUST00000161731.5
ENSMUST00000238883.2
CDS-3UTR CAA 90 bp CCGGTGGCCCTTGTGTCTGCAGGAGCAGTGAGGTGCTGTCTTTCATATTGTAACTTTCCTAACTGTTGCTaGAGATTTTCAATGGCTTCT +
Preference number: 5 (lower is better)
Translates to: PVALVSAGAVRCCLSYCNFPNCC*RFSMAS
Trigger: AGAAGCCATTGAAAATCTCAAGCAACAGTTAGGAAA...GTTACAATATGAAAGACAGCACCTCACTGCTCCTGCAGACACAAGGGCCACCGG
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000081349.9
ENSMUST00000099576.9
ENSMUST00000102547.10
ENSMUST00000161731.5
CDS-3UTR CAA 90 bp CTCTTGGGGATCACCATGTACCTCTTTTCTCATGACAAGGGTATATACTGGAAGTCTGGCTGCTTCTGGTaGCTTTGCTTTCAGCATCAC +
Preference number: 5 (lower is better)
Translates to: LLGITMYLFSHDKGIYWKSGCFW*LCFQHH
Trigger: GTGATGCTGAAAGCAAAGCAACCAGAAGCAGCCAGA...CTTCCAGTATATACCCTTGTCATGAGAAAAGAGGTACATGGTGATCCCCAAGAG
47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000081349.9
ENSMUST00000099576.9
ENSMUST00000102547.10
CDS-3UTR CAA 90 bp CTTGTGTCTGCAGGAGCAGTGAGGTGCTGTCTTTCATATTGTAACTTCCTTCTGGAGATAGTCAGCTTCTaGGGTACTATCTGGCTGCTT +
Preference number: 5 (lower is better)
Translates to: LVSAGAVRCCLSYCNFLLEIVSF*GTIWLL
Trigger: AAGCAGCCAGATAGTACCCAAGAAGCTGACTATCTC...CAGAAGGAAGTTACAATATGAAAGACAGCACCTCACTGCTCCTGCAGACACAAG
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000081349.9
ENSMUST00000099576.9
ENSMUST00000102547.10
ENSMUST00000161731.5
CDS-3UTR CAA 90 bp GGATCACCATGTACCTCTTTTCTCATGACAAGGGTATATACTGGAAGGCTTAGAAGGAGTCCCATAAAGTaGGTGCGGCGTCTTGGCTTT +
Preference number: 5 (lower is better)
Translates to: GSPCTSFLMTRVYTGRLRRSPIK*VRRLGF
Trigger: AAAGCCAAGACGCCGCACCAACTTTATGGGACTCCT...TCTAAGCCTTCCAGTATATACCCTTGTCATGAGAAAAGAGGTACATGGTGATCC
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000081349.9
ENSMUST00000099576.9
ENSMUST00000102547.10
CDS-3UTR CAA 90 bp TTCCCAAAGAAGGCACAGGGGACTTTCTGCAGATGGCCTCAGAAGGAGATGAGCTTGACGTCTTTGAGTTaGGGCAGAATTTCTAAACTA +
Preference number: 5 (lower is better)
Translates to: FPKKAQGTFCRWPQKEMSLTSLS*GRISKL
Trigger: TAGTTTAGAAATTCTGCCCAAACTCAAAGACGTCAA...GCTCATCTCCTTCTGAGGCCATCTGCAGAAAGTCCCCTGTGCCTTCTTTGGGAA
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000081349.9
ENSMUST00000099576.9
ENSMUST00000102547.10
CDS-3UTR CAA 90 bp GCCCTTGTGTCTGCAGGAGCAGTGAGGTGCTGTCTTTCATATTGTAACTTCCTTAGACTAGCGGTGGGATaGATTTTCTTTGTCTCCACT +
Preference number: 5 (lower is better)
Translates to: ALVSAGAVRCCLSYCNFLRLAVG*IFFVST
Trigger: AGTGGAGACAAAGAAAATCAATCCCACCGCTAGTCT...AAGGAAGTTACAATATGAAAGACAGCACCTCACTGCTCCTGCAGACACAAGGGC
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000081349.9
ENSMUST00000099576.9
ENSMUST00000102547.10
ENSMUST00000161731.5
CDS-3UTR CAA 90 bp GACTTCCCAAAGAAGGCACAGGGGACTTTCTGCAGATGGCCTCAGAAGGAGATGTTATGGAAAGCGTTATaGGATCTGTCTAGAGTTACA +
Preference number: 5 (lower is better)
Translates to: DFPKKAQGTFCRWPQKEMLWKAL*DLSRVT
Trigger: TGTAACTCTAGACAGATCCAATAACGCTTTCCATAA...CATCTCCTTCTGAGGCCATCTGCAGAAAGTCCCCTGTGCCTTCTTTGGGAAGTC
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000099576.9
ENSMUST00000102547.10
CDS TCA 90 bp GTAAATCCAAACAGGGATTTCATAGAGAATTTACTCAGGATCGACTaGGCCATCTCAAGTCCGGCTTCGGATTTGTCTGGTTCCAGCACA +
Preference number: 5 (lower is better)
Translates to: VNPNRDFIENLLRID*AISSPASDLSGSST
Trigger: TGTGCTGGAACCAGACAAATCCGAAGCCGGACTTGAGATGGCTCAGTCGATCCTGAGTAAATTCTCTATGAAATCCCTGTTTGGATTTAC
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000081349.9
CDS-3UTR CAA 90 bp ATGGCCTCAGAAGGAGATGAGCAAATGTCCCTAACTAGTCTTTCAGGAACTCCCGTTTCGATTTCTTCTTaGTGCTCCCTCTTCAGATGT +
Preference number: 5 (lower is better)
Translates to: MASEGDEQMSLTSLSGTPVSISS*CSLFRC
Trigger: ACATCTGAAGAGGGAGCACAAAGAAGAAATCGAAAC...GGGAGTTCCTGAAAGACTAGTTAGGGACATTTGCTCATCTCCTTCTGAGGCCAT
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000081349.9
ENSMUST00000099576.9
ENSMUST00000102547.10
ENSMUST00000161731.5
CDS-3UTR CAA 90 bp AGACTTCCCAAAGAAGGCACAGGGGACTTTCTGCAGATGGCCTCAGAAGGAGATTTTCCTAACTGTTGCTaGAGATTTTCAATGGCTTCT +
Preference number: 5 (lower is better)
Translates to: RLPKEGTGDFLQMASEGDFPNCC*RFSMAS
Trigger: AGAAGCCATTGAAAATCTCAAGCAACAGTTAGGAAA...ATCTCCTTCTGAGGCCATCTGCAGAAAGTCCCCTGTGCCTTCTTTGGGAAGTCT
46% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 3 transcripts:
ENSMUST00000081349.9
ENSMUST00000099576.9
ENSMUST00000102547.10
CDS-3UTR CAA 90 bp ATGGCCTCAGAAGGAGATGAGCAAATGTCCCTAACTAGTCTTTCAGGAACTCCCAGTTGGTGCGGCGTCTaGGCTTTTATCATTTATTTG +
Preference number: 5 (lower is better)
Translates to: MASEGDEQMSLTSLSGTPSWCGV*AFIIYL
Trigger: CAAATAAATGATAAAAGCCAAGACGCCGCACCAACT...GGGAGTTCCTGAAAGACTAGTTAGGGACATTTGCTCATCTCCTTCTGAGGCCAT
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000081349.9
ENSMUST00000099576.9
ENSMUST00000102547.10
ENSMUST00000161731.5
CDS-3UTR CAA 90 bp GCCCTTGTGTCTGCAGGAGCAGTGAGGTGCTGTCTTTCATATTGTAACTTCCTTCGACTTTTGACGTCTTaGAGTTTGGGCAGAATTTCT +
Preference number: 5 (lower is better)
Translates to: ALVSAGAVRCCLSYCNFLRLLTS*SLGRIS
Trigger: AGAAATTCTGCCCAAACTCAAAGACGTCAAAAGTCG...AAGGAAGTTACAATATGAAAGACAGCACCTCACTGCTCCTGCAGACACAAGGGC
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000081349.9
ENSMUST00000099576.9
ENSMUST00000102547.10
ENSMUST00000161731.5
CDS-3UTR CAA 90 bp GCATTGTTCTTGTGGATTGACAAGAGACTTCCCAAAGAAGGCACAGGGGACTTTTCATCTGTTGCTCACTaGCTTCTAGTTGACGCTTCA +
Preference number: 5 (lower is better)
Translates to: ALFLWIDKRLPKEGTGDFSSVAH*LLVDAS
Trigger: TGAAGCGTCAACTAGAAGCAAGTGAGCAACAGATGA...AAAGTCCCCTGTGCCTTCTTTGGGAAGTCTCTTGTCAATCCACAAGAACAATGC
46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000081349.9
ENSMUST00000099576.9
ENSMUST00000102547.10
CDS-3UTR CAA 90 bp CTTAAGGTATCTGGCAAGTTCAAAGGTCCTGGAAAGTTGCTGAGGCAAGAGGTGCCTTCTCTCCAGTCTTaGGCTTCATTCCAAAATATC +
Preference number: 5 (lower is better)
Translates to: LKVSGKFKGPGKLLRQEVPSLQS*ASFQNI
Trigger: GATATTTTGGAATGAAGCCAAAGACTGGAGAGAAGG...CACCTCTTGCCTCAGCAACTTTCCAGGACCTTTGAACTTGCCAGATACCTTAAG
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000099576.9
CDS-3UTR CAA 90 bp GCCCTTGTGTCTGCAGGAGCAGTGAGGTGCTGTCTTTCATATTGTAACTTCCTTTTTGTGGGAGTCTGTTaGAAAAATATGTCGCCTGGA +
Preference number: 5 (lower is better)
Translates to: ALVSAGAVRCCLSYCNFLFVGVC*KNMSPG
Trigger: TCCAGGCGACATATTTTTCAAACAGACTCCCACAAA...AAGGAAGTTACAATATGAAAGACAGCACCTCACTGCTCCTGCAGACACAAGGGC
46% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 3 transcripts:
ENSMUST00000099576.9
ENSMUST00000102547.10
ENSMUST00000161731.5
CDS-3UTR CAA 90 bp GGATCACCATGTACCTCTTTTCTCATGACAAGGGTATATACTGGAAGGCTTAGACAAATGACTTCCTCATaGTCCACGCTCACTGTAGCA +
Preference number: 5 (lower is better)
Translates to: GSPCTSFLMTRVYTGRLRQMTSS*STLTVA
Trigger: TGCTACAGTGAGCGTGGACAATGAGGAAGTCATTTG...TCTAAGCCTTCCAGTATATACCCTTGTCATGAGAAAAGAGGTACATGGTGATCC
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000081349.9
CDS-3UTR CAA 90 bp CTTGTGTCTGCAGGAGCAGTGAGGTGCTGTCTTTCATATTGTAACTTCCTTCTGGTTTCGATTTCTTCTTaGTGCTCCCTCTTCAGATGT +
Preference number: 5 (lower is better)
Translates to: LVSAGAVRCCLSYCNFLLVSISS*CSLFRC
Trigger: ACATCTGAAGAGGGAGCACAAAGAAGAAATCGAAAC...CAGAAGGAAGTTACAATATGAAAGACAGCACCTCACTGCTCCTGCAGACACAAG
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000081349.9
ENSMUST00000099576.9
ENSMUST00000102547.10
ENSMUST00000161731.5
CDS-3UTR CAA 90 bp GTGGCCCTTGTGTCTGCAGGAGCAGTGAGGTGCTGTCTTTCATATTGTAACTTCTTTCCTAACTGTTGCTaGAGATTTTCAATGGCTTCT +
Preference number: 5 (lower is better)
Translates to: VALVSAGAVRCCLSYCNFFPNCC*RFSMAS
Trigger: AGAAGCCATTGAAAATCTCAAGCAACAGTTAGGAAA...GAAGTTACAATATGAAAGACAGCACCTCACTGCTCCTGCAGACACAAGGGCCAC
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000081349.9
ENSMUST00000099576.9
ENSMUST00000102547.10
ENSMUST00000161731.5
CDS-3UTR CAA 90 bp ATGGCCTCAGAAGGAGATGAGCAAATGTCCCTAACTAGTCTTTCAGGAACTCCCATCTTGTGCTCTTTTTaGGCTTTCTTGAAGAACTCC +
Preference number: 5 (lower is better)
Translates to: MASEGDEQMSLTSLSGTPILCSF*AFLKNS
Trigger: GGAGTTCTTCAAGAAAGCCAAAAAAGAGCACAAGAT...GGGAGTTCCTGAAAGACTAGTTAGGGACATTTGCTCATCTCCTTCTGAGGCCAT
44% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 4 transcripts:
ENSMUST00000081349.9
ENSMUST00000099576.9
ENSMUST00000102547.10
ENSMUST00000161731.5
CDS-3UTR CAA 90 bp GCCCTTGTGTCTGCAGGAGCAGTGAGGTGCTGTCTTTCATATTGTAACTTCCTTATCTTGTGCTCTTTTTaGGCTTTCTTGAAGAACTCC +
Preference number: 5 (lower is better)
Translates to: ALVSAGAVRCCLSYCNFLILCSF*AFLKNS
Trigger: GGAGTTCTTCAAGAAAGCCAAAAAAGAGCACAAGAT...AAGGAAGTTACAATATGAAAGACAGCACCTCACTGCTCCTGCAGACACAAGGGC
44% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 4 transcripts:
ENSMUST00000081349.9
ENSMUST00000099576.9
ENSMUST00000102547.10
ENSMUST00000161731.5
CDS-3UTR CAA 90 bp GGATCACCATGTACCTCTTTTCTCATGACAAGGGTATATACTGGAAGGCTTAGACGCTTCCAAATGGTCTaGAAGTCACTGCAGAACTCA +
Preference number: 5 (lower is better)
Translates to: GSPCTSFLMTRVYTGRLRRFQMV*KSLQNS
Trigger: TGAGTTCTGCAGTGACTTCAAGACCATTTGGAAGCG...TCTAAGCCTTCCAGTATATACCCTTGTCATGAGAAAAGAGGTACATGGTGATCC
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000081349.9
ENSMUST00000099576.9
ENSMUST00000102547.10
CDS-3UTR CAA 90 bp ACAATTACATATTCCTGTAGTGTTCCCAAACATAACTTTGCATTGTTCTTGTGGGACCTCCGGGGCTTTTaGTTCTCTTGGGTGCTCCTC +
Preference number: 5 (lower is better)
Translates to: TITYSCSVPKHNFALFLWDLRGF*FSWVLL
Trigger: GAGGAGCACCCAAGAGAACAAAAAGCCCCGGAGGTC...CCACAAGAACAATGCAAAGTTATGTTTGGGAACACTACAGGAATATGTAATTGT
44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000099576.9
ENSMUST00000102547.10
CDS TCA 90 bp GTGTCCTTGGAGAATAAATATTCAAATTCACTTGTGTCCCTAATATaGGGCTCTTCTAAGGAGTCCCATAAAGTTGGTGCGGCGTCTTGG +
Preference number: 5 (lower is better)
Translates to: VSLENKYSNSLVSLI*GSSKESHKVGAASW
Trigger: CCAAGACGCCGCACCAACTTTATGGGACTCCTTAGAAGAGCCTCATATTAGGGACACAAGTGAATTTGAATATTTATTCTCCAAGGACAC
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000081349.9
ENSMUST00000099576.9
ENSMUST00000102547.10
ENSMUST00000161731.5
ENSMUST00000238883.2
CDS-3UTR CAA 90 bp ATGGCCTCAGAAGGAGATGAGCAAATGTCCCTAACTAGTCTTTCAGGAACTCCCTTTCCTAACTGTTGCTaGAGATTTTCAATGGCTTCT +
Preference number: 5 (lower is better)
Translates to: MASEGDEQMSLTSLSGTPFPNCC*RFSMAS
Trigger: AGAAGCCATTGAAAATCTCAAGCAACAGTTAGGAAA...GGGAGTTCCTGAAAGACTAGTTAGGGACATTTGCTCATCTCCTTCTGAGGCCAT
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000081349.9
ENSMUST00000099576.9
ENSMUST00000102547.10
ENSMUST00000161731.5
CDS-3UTR CAA 90 bp AAACCACGTGACAATAACTTTCCTTCAAACCACAGAAAGACAGCTAGCACCTGTTCATCTGTTGCTCACTaGCTTCTAGTTGACGCTTCA +
Preference number: 5 (lower is better)
Translates to: KPRDNNFPSNHRKTASTCSSVAH*LLVDAS
Trigger: TGAAGCGTCAACTAGAAGCAAGTGAGCAACAGATGA...ACAGGTGCTAGCTGTCTTTCTGTGGTTTGAAGGAAAGTTATTGTCACGTGGTTT
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000099576.9
CDS-3UTR CAA 90 bp GGATCACCATGTACCTCTTTTCTCATGACAAGGGTATATACTGGAAGGCTTAGATCATCTGTTGCTCACTaGCTTCTAGTTGACGCTTCA +
Preference number: 5 (lower is better)
Translates to: GSPCTSFLMTRVYTGRLRSSVAH*LLVDAS
Trigger: TGAAGCGTCAACTAGAAGCAAGTGAGCAACAGATGA...TCTAAGCCTTCCAGTATATACCCTTGTCATGAGAAAAGAGGTACATGGTGATCC
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000081349.9
ENSMUST00000099576.9
ENSMUST00000102547.10
CDS-3UTR CAA 90 bp CTTGTGTCTGCAGGAGCAGTGAGGTGCTGTCTTTCATATTGTAACTTCCTTCTGATCTTGTGCTCTTTTTaGGCTTTCTTGAAGAACTCC +
Preference number: 5 (lower is better)
Translates to: LVSAGAVRCCLSYCNFLLILCSF*AFLKNS
Trigger: GGAGTTCTTCAAGAAAGCCAAAAAAGAGCACAAGAT...CAGAAGGAAGTTACAATATGAAAGACAGCACCTCACTGCTCCTGCAGACACAAG
43% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 4 transcripts:
ENSMUST00000081349.9
ENSMUST00000099576.9
ENSMUST00000102547.10
ENSMUST00000161731.5
CDS-3UTR CAA 90 bp CTCTTGGGGATCACCATGTACCTCTTTTCTCATGACAAGGGTATATACTGGAAGCCTTCTCTCCAGTCTTaGGCTTCATTCCAAAATATC +
Preference number: 5 (lower is better)
Translates to: LLGITMYLFSHDKGIYWKPSLQS*ASFQNI
Trigger: GATATTTTGGAATGAAGCCAAAGACTGGAGAGAAGG...CTTCCAGTATATACCCTTGTCATGAGAAAAGAGGTACATGGTGATCCCCAAGAG
43% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 3 transcripts:
ENSMUST00000081349.9
ENSMUST00000099576.9
ENSMUST00000102547.10
CDS-3UTR CAA 90 bp ATCTCAATAGCTGATGCTCACTTCCAGCATCAAAACTTCTTCTCCAGATTAAGGGTCTGCTCTTTGAAGTaGTCACAGGGAAAGCCTTCA +
Preference number: 5 (lower is better)
Translates to: ISIADAHFQHQNFFSRLRVCSLK*SQGKPS
Trigger: TGAAGGCTTTCCCTGTGACAACTTCAAAGAGCAGAC...CCTTAATCTGGAGAAGAAGTTTTGATGCTGGAAGTGAGCATCAGCTATTGAGAT
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000099576.9
CDS-3UTR CAA 90 bp ACAATTACATATTCCTGTAGTGTTCCCAAACATAACTTTGCATTGTTCTTGTGGAGGAGTCCCATAAAGTaGGTGCGGCGTCTTGGCTTT +
Preference number: 5 (lower is better)
Translates to: TITYSCSVPKHNFALFLWRSPIK*VRRLGF
Trigger: AAAGCCAAGACGCCGCACCAACTTTATGGGACTCCT...CCACAAGAACAATGCAAAGTTATGTTTGGGAACACTACAGGAATATGTAATTGT
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000081349.9
ENSMUST00000099576.9
ENSMUST00000102547.10
CDS-3UTR CAA 90 bp CTTGTGTCTGCAGGAGCAGTGAGGTGCTGTCTTTCATATTGTAACTTCCTTCTGAAAAATTGTTCAGGTTaGTCCAGCAGTTTCAAGTCT +
Preference number: 5 (lower is better)
Translates to: LVSAGAVRCCLSYCNFLLKNCSG*SSSFKS
Trigger: AGACTTGAAACTGCTGGACAAACCTGAACAATTTTT...CAGAAGGAAGTTACAATATGAAAGACAGCACCTCACTGCTCCTGCAGACACAAG
42% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 4 transcripts:
ENSMUST00000081349.9
ENSMUST00000099576.9
ENSMUST00000102547.10
ENSMUST00000161731.5
CDS-3UTR CAA 90 bp GCATTGTTCTTGTGGATTGACAAGAGACTTCCCAAAGAAGGCACAGGGGACTTTTTATGGAAAGCGTTATaGGATCTGTCTAGAGTTACA +
Preference number: 5 (lower is better)
Translates to: ALFLWIDKRLPKEGTGDFLWKAL*DLSRVT
Trigger: TGTAACTCTAGACAGATCCAATAACGCTTTCCATAA...AAAGTCCCCTGTGCCTTCTTTGGGAAGTCTCTTGTCAATCCACAAGAACAATGC
42% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000099576.9
ENSMUST00000102547.10
CDS-3UTR CAA 90 bp CCAACACAGCTCAACTATGAATTGCCATATTCATGGTCTTCTGATATTCTGCTCAGTTGGTGCGGCGTCTaGGCTTTTATCATTTATTTG +
Preference number: 5 (lower is better)
Translates to: PTQLNYELPYSWSSDILLSWCGV*AFIIYL
Trigger: CAAATAAATGATAAAAGCCAAGACGCCGCACCAACT...GAGCAGAATATCAGAAGACCATGAATATGGCAATTCATAGTTGAGCTGTGTTGG
41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000099576.9
CDS-3UTR CAA 90 bp ACAATTACATATTCCTGTAGTGTTCCCAAACATAACTTTGCATTGTTCTTGTGGGCACGTTCGGCAAAATaGGGAATCTGGGCTAACTCA +
Preference number: 5 (lower is better)
Translates to: TITYSCSVPKHNFALFLWARSAK*GIWANS
Trigger: TGAGTTAGCCCAGATTCCCAATTTTGCCGAACGTGC...CCACAAGAACAATGCAAAGTTATGTTTGGGAACACTACAGGAATATGTAATTGT
41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000081349.9
ENSMUST00000099576.9
ENSMUST00000102547.10
CDS-3UTR CAA 90 bp ACAATTACATATTCCTGTAGTGTTCCCAAACATAACTTTGCATTGTTCTTGTGGAAGAACTCCTCCAGTTaGTCCTTGAAAGGCTGCAGG +
Preference number: 5 (lower is better)
Translates to: TITYSCSVPKHNFALFLWKNSSS*SLKGCR
Trigger: CCTGCAGCCTTTCAAGGACAAACTGGAGGAGTTCTT...CCACAAGAACAATGCAAAGTTATGTTTGGGAACACTACAGGAATATGTAATTGT
41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000081349.9
ENSMUST00000099576.9
ENSMUST00000102547.10
CDS TCA 90 bp GTCTCCAGGTCAACCACGGAGTCATCCACAGTAAATATGGCCTGTTaGATATCTTTCATTTCTAGATGTAAACTAGATATCAAGATTCCC +
Preference number: 5 (lower is better)
Translates to: VSRSTTESSTVNMAC*ISFISRCKLDIKIP
Trigger: GGGAATCTTGATATCTAGTTTACATCTAGAAATGAAAGATATTCAACAGGCCATATTTACTGTGGATGACTCCGTGGTTGACCTGGAGAC
40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000081349.9
ENSMUST00000099576.9
ENSMUST00000102547.10
ENSMUST00000161731.5
ENSMUST00000238883.2
CDS-3UTR CAA 90 bp GGATCACCATGTACCTCTTTTCTCATGACAAGGGTATATACTGGAAGGCTTAGATTGACGTCTTTGAGTTaGGGCAGAATTTCTAAACTA +
Preference number: 5 (lower is better)
Translates to: GSPCTSFLMTRVYTGRLRLTSLS*GRISKL
Trigger: TAGTTTAGAAATTCTGCCCAAACTCAAAGACGTCAA...TCTAAGCCTTCCAGTATATACCCTTGTCATGAGAAAAGAGGTACATGGTGATCC
40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000081349.9
ENSMUST00000099576.9
ENSMUST00000102547.10
CDS-3UTR CAA 90 bp ACAATTACATATTCCTGTAGTGTTCCCAAACATAACTTTGCATTGTTCTTGTGGAGAGTTACAGTGCCCTaGTATGAAAATCCTCTGACT +
Preference number: 5 (lower is better)
Translates to: TITYSCSVPKHNFALFLWRVTVP*YENPLT
Trigger: AGTCAGAGGATTTTCATACAAGGGCACTGTAACTCT...CCACAAGAACAATGCAAAGTTATGTTTGGGAACACTACAGGAATATGTAATTGT
38% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000099576.9
ENSMUST00000102547.10
CDS-3UTR CAA 90 bp ACAATTACATATTCCTGTAGTGTTCCCAAACATAACTTTGCATTGTTCTTGTGGAAAAATTGTTCAGGTTaGTCCAGCAGTTTCAAGTCT +
Preference number: 5 (lower is better)
Translates to: TITYSCSVPKHNFALFLWKNCSG*SSSFKS
Trigger: AGACTTGAAACTGCTGGACAAACCTGAACAATTTTT...CCACAAGAACAATGCAAAGTTATGTTTGGGAACACTACAGGAATATGTAATTGT
36% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000081349.9
ENSMUST00000099576.9
ENSMUST00000102547.10
CDS-3UTR CAA 90 bp ACAATTACATATTCCTGTAGTGTTCCCAAACATAACTTTGCATTGTTCTTGTGGTTGACGTCTTTGAGTTaGGGCAGAATTTCTAAACTA +
Preference number: 5 (lower is better)
Translates to: TITYSCSVPKHNFALFLWLTSLS*GRISKL
Trigger: TAGTTTAGAAATTCTGCCCAAACTCAAAGACGTCAA...CCACAAGAACAATGCAAAGTTATGTTTGGGAACACTACAGGAATATGTAATTGT
36% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000081349.9
ENSMUST00000099576.9
ENSMUST00000102547.10
CDS CAA 72 bp GTGGTGGTGGTGGTCCATCACTTGGAGGCACGGGAGTaGGAGGAGGAGGCGGAGGAGGTGGCGGTGGCGACA +
Preference number: 6 (lower is better)
Translates to: VVVVVHHLEARE*EEEAEEVAVAT
Trigger: TGTCGCCACCGCCACCTCCTCCGCCTCCTCCTCCAACTCCCGTGCCTCCAAGTGATGGACCACCACCACCAC
67% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000081349.9
ENSMUST00000099576.9
ENSMUST00000102547.10
ENSMUST00000161731.5
ENSMUST00000238883.2
CDS GCA 72 bp CGGTGGCGACACAGGACACACAGGTGGTATGGGTGGTaGTGGAGGCAAAGGTCCAAGTCCAGGTGGGAGGGG +
Preference number: 6 (lower is better)
Translates to: RWRHRTHRWYGW*WRQRSKSRWEG
Trigger: CCCCTCCCACCTGGACTTGGACCTTTGCCTCCAGCACCACCCATACCACCTGTGTGTCCTGTGTCGCCACCG
64% GC, longest homopolymer 4 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000081349.9
ENSMUST00000099576.9
ENSMUST00000102547.10
ENSMUST00000161731.5
ENSMUST00000238883.2
CDS GCA 72 bp GAACTGGAGCCTCTGCCTGTGGCTGATCTGAGCCTTTaGTGGGATCACCTCGCTCAGGAGCGGGATCCCCCT +
Preference number: 6 (lower is better)
Translates to: ELEPLPVADLSL*WDHLAQERDPP
Trigger: AGGGGGATCCCGCTCCTGAGCGAGGTGATCCCAGCAAAGGCTCAGATCAGCCACAGGCAGAGGCTCCAGTTC
62% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000081349.9
CDS CCA 72 bp GAAATGCTGACTCCTGGCAGCCACGCCCTTTCCTCCTaGTTCTCTTCTGCCGGAGCTCCTCCGGGCTCTCTC +
Preference number: 6 (lower is better)
Translates to: EMLTPGSHALSS*FSSAGAPPGSL
Trigger: GAGAGAGCCCGGAGGAGCTCCGGCAGAAGAGAACCAGGAGGAAAGGGCGTGGCTGCCAGGAGTCAGCATTTC
62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000099576.9
ENSMUST00000102547.10
ENSMUST00000161731.5
CDS GCA 72 bp CTGCTCCAGGAGAGTGGGAGTGGCCTTCGGATCAGTTaGTCTACCTGGGCTCTTCACTGTCTGTGGGCCTCC +
Preference number: 6 (lower is better)
Translates to: LLQESGSGLRIS*STWALHCLWAS
Trigger: GGAGGCCCACAGACAGTGAAGAGCCCAGGTAGAGCAACTGATCCGAAGGCCACTCCCACTCTCCTGGAGCAG
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000081349.9
CDS CAA 72 bp CCGAAGGCCAGGTCTGCATCCGGTGTCCTGAGGATGTaGGCTGGGCAGCTCTCTCTTCTCCGTAGCGAAGAG +
Preference number: 6 (lower is better)
Translates to: PKARSASGVLRM*AGQLSLLRSEE
Trigger: CTCTTCGCTACGGAGAAGAGAGAGCTGCCCAGCCAACATCCTCAGGACACCGGATGCAGACCTGGCCTTCGG
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000099576.9
ENSMUST00000102547.10
ENSMUST00000161731.5
CDS CAA 90 bp GCTGTGATAGCTGCTCCAGGAGAGTGGGAGTGGCCTTCGGATCAGTaGCTCTACCTGGGCTCTTCACTGTCTGTGGGCCTCCCTGTCCCA +
Preference number: 6 (lower is better)
Translates to: AVIAAPGEWEWPSDQ*LYLGSSLSVGLPVP
Trigger: TGGGACAGGGAGGCCCACAGACAGTGAAGAGCCCAGGTAGAGCAACTGATCCGAAGGCCACTCCCACTCTCCTGGAGCAGCTATCACAGC
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000081349.9
CDS GCA 72 bp CAGACAGCTTGGAGTCTGCCTGGAGTCCTGTCGTCCTaGTCTGTGGGGCTCTGGTCAGGGCTTTTGGGATCA +
Preference number: 6 (lower is better)
Translates to: QTAWSLPGVLSS*SVGLWSGLLGS
Trigger: TGATCCCAAAAGCCCTGACCAGAGCCCCACAGAGCAGGACGACAGGACTCCAGGCAGACTCCAAGCTGTCTG
60% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000081349.9
CDS GCA 72 bp CAGACAGCTTGGAGTCTGCCTGGAGTCCTGTCGTCCTaGTCTGTGGGGCTCTGGTCAGGGTTGAGATCCAAG +
Preference number: 6 (lower is better)
Translates to: QTAWSLPGVLSS*SVGLWSGLRSK
Trigger: CTTGGATCTCAACCCTGACCAGAGCCCCACAGAGCAGGACGACAGGACTCCAGGCAGACTCCAAGCTGTCTG
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000099576.9
ENSMUST00000102547.10
ENSMUST00000238883.2
CDS CCA 72 bp GCAGCCTGGTCCTGCCTGGGGCTGTGCTCTGCCGGATaGCTACCATCACCACCAAGTTCCAGTTTGCTACTT +
Preference number: 6 (lower is better)
Translates to: AAWSCLGLCSAG*LPSPPSSSLLL
Trigger: AAGTAGCAAACTGGAACTTGGTGGTGATGGTAGCCATCCGGCAGAGCACAGCCCCAGGCAGGACCAGGCTGC
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000081349.9
CDS CCA 72 bp CGCAAGGGCACCTACAGTCTGGTCTGTTGCTGCGGGTaGGATTTGAGACCCTTCTTCTGCAGCCTGGTCCTG +
Preference number: 6 (lower is better)
Translates to: RKGTYSLVCCCG*DLRPFFCSLVL
Trigger: CAGGACCAGGCTGCAGAAGAAGGGTCTCAAATCCCACCCGCAGCAACAGACCAGACTGTAGGTGCCCTTGCG
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000081349.9
CDS CAA 90 bp TGGTCAGGGCTTTTGGGATCAGACGGGCTGTCTGCCGGCCGAGACTaGGACCTCTCGAACACAGCGCGTAGTGACTCCTTCTCATGCTTC +
Preference number: 6 (lower is better)
Translates to: WSGLLGSDGLSAGRD*DLSNTARSDSFSCF
Trigger: GAAGCATGAGAAGGAGTCACTACGCGCTGTGTTCGAGAGGTCCAAGTCTCGGCCGGCAGACAGCCCGTCTGATCCCAAAAGCCCTGACCA
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000081349.9
CDS CAA 90 bp CGGGCTCTCTCTCCTCCTGCCAGACCTCCGGGGCTTTTTGTTCTCTaGGGTGCTCCTCCTAATGAGAGAGCTCACAGGGAGTTCTCTGCG +
Preference number: 6 (lower is better)
Translates to: RALSPPARPPGLFVL*GAPPNERAHREFSA
Trigger: CGCAGAGAACTCCCTGTGAGCTCTCTCATTAGGAGGAGCACCCAAGAGAACAAAAAGCCCCGGAGGTCTGGCAGGAGGAGAGAGAGCCCG
59% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000099576.9
ENSMUST00000102547.10
ENSMUST00000161731.5
CDS CAA 90 bp GTGGGAGCAGAAGGATCCTATGATGCTGCTGTGGACTGGGACACCTaGGAGACAGAGGCGAGGGAACAGGTGACAGCCGTTTGTGTGCGC +
Preference number: 6 (lower is better)
Translates to: VGAEGSYDAAVDWDT*ETEAREQVTAVCVR
Trigger: GCGCACACAAACGGCTGTCACCTGTTCCCTCGCCTCTGTCTCCAAGGTGTCCCAGTCCACAGCAGCATCATAGGATCCTTCTGCTCCCAC
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000099576.9
ENSMUST00000102547.10
ENSMUST00000161731.5
CDS CAA 90 bp CCAGAGTTTCCGAAGGCCAGGTCTGCATCCGGTGTCCTGAGGATGTaGGCTGGGCAGCTCTCTCTTCTCCGTAGCGAAGAGGTAAGCGTT +
Preference number: 6 (lower is better)
Translates to: PEFPKARSASGVLRM*AGQLSLLRSEEVSV
Trigger: AACGCTTACCTCTTCGCTACGGAGAAGAGAGAGCTGCCCAGCCAACATCCTCAGGACACCGGATGCAGACCTGGCCTTCGGAAACTCTGG
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000099576.9
ENSMUST00000102547.10
ENSMUST00000161731.5
CDS CAA 90 bp TGGCCCCAAGCCTTTTTCGGAAGCTTCCTCAGACACCAGCCAAGTTaGGCTTGCTCTGAGGGAAGTCGGGCTGGCTCCTTTGGTCTCCGT +
Preference number: 6 (lower is better)
Translates to: WPQAFFGSFLRHQPS*ACSEGSRAGSFGLR
Trigger: ACGGAGACCAAAGGAGCCAGCCCGACTTCCCTCAGAGCAAGCCAAACTTGGCTGGTGTCTGAGGAAGCTTCCGAAAAAGGCTTGGGGCCA
58% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000099576.9
ENSMUST00000102547.10
ENSMUST00000161731.5
CDS TCA 72 bp AGGGAGCTACTGGAACAGACCTGGTCCTTCCCCATCTaGAATGCTGACTCCTGGCAGCCACGCCCTTTCCTC +
Preference number: 6 (lower is better)
Translates to: RELLEQTWSFPI*NADSWQPRPFL
Trigger: GAGGAAAGGGCGTGGCTGCCAGGAGTCAGCATTTCAGATGGGGAAGGACCAGGTCTGTTCCAGTAGCTCCCT
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000099576.9
ENSMUST00000102547.10
ENSMUST00000161731.5
CDS TCA 72 bp CAGAGTTTCCGAAGGCCAGGTCTGCATCCGGTGTCCTaGGGATGTTGGCTGGGCAGCTCTCTCTTCTCCGTA +
Preference number: 6 (lower is better)
Translates to: QSFRRPGLHPVS*GCWLGSSLFSV
Trigger: TACGGAGAAGAGAGAGCTGCCCAGCCAACATCCTCAGGACACCGGATGCAGACCTGGCCTTCGGAAACTCTG
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000099576.9
ENSMUST00000102547.10
ENSMUST00000161731.5
CDS GCA 72 bp TTCTTCTGCAGCCTGGTCCTGCCTGGGGCTGTGCTCTaGCGGATGGCTACCATCACCACCAAGTTCCAGTTT +
Preference number: 6 (lower is better)
Translates to: FFCSLVLPGAVL*RMATITTKFQF
Trigger: AAACTGGAACTTGGTGGTGATGGTAGCCATCCGGCAGAGCACAGCCCCAGGCAGGACCAGGCTGCAGAAGAA
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000081349.9
CDS GCA 72 bp AGTGCTCGCAAGGGCACCTACAGTCTGGTCTGTTGCTaGGGGTGGGATTTGAGACCCTTCTTCTGCAGCCTG +
Preference number: 6 (lower is better)
Translates to: SARKGTYSLVCC*GWDLRPFFCSL
Trigger: CAGGCTGCAGAAGAAGGGTCTCAAATCCCACCCGCAGCAACAGACCAGACTGTAGGTGCCCTTGCGAGCACT
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000081349.9
CDS GCA 72 bp GCCCTCCCACATCAGCATCTCCTACCTCAGTGGGGCTaGTGTCAGGGGACAGAGGTCCTTCAAGATCAGTGT +
Preference number: 6 (lower is better)
Translates to: ALPHQHLLPQWG*CQGTEVLQDQC
Trigger: ACACTGATCTTGAAGGACCTCTGTCCCCTGACAGCAGCCCCACTGAGGTAGGAGATGCTGATGTGGGAGGGC
58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000099576.9
ENSMUST00000102547.10
ENSMUST00000161731.5
CDS CCA 72 bp CGGATCAGTTGCTCTACCTGGGCTCTTCACTGTCTGTaGGCCTCCCTGTCCCAGAGACTTCTGAACACGCTG +
Preference number: 6 (lower is better)
Translates to: RISCSTWALHCL*ASLSQRLLNTL
Trigger: CAGCGTGTTCAGAAGTCTCTGGGACAGGGAGGCCCACAGACAGTGAAGAGCCCAGGTAGAGCAACTGATCCG
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000081349.9
CDS CCA 72 bp TTGCCTTCACCTGACCACCCTGGACGTGGGCATCTCTaGGGCTCTTGTGGCTCTCCTGGTCAGTACTGTAAC +
Preference number: 6 (lower is better)
Translates to: LPSPDHPGRGHL*GSCGSPGQYCN
Trigger: GTTACAGTACTGACCAGGAGAGCCACAAGAGCCCCAGAGATGCCCACGTCCAGGGTGGTCAGGTGAAGGCAA
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000081349.9
CDS CCA 72 bp CAGTGGTGGGAGCAGAAGGATCCTATGATGCTGCTGTaGACTGGGACACCTTGGAGACAGAGGCGAGGGAAC +
Preference number: 6 (lower is better)
Translates to: QWWEQKDPMMLL*TGTPWRQRRGN
Trigger: GTTCCCTCGCCTCTGTCTCCAAGGTGTCCCAGTCCACAGCAGCATCATAGGATCCTTCTGCTCCCACCACTG
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000099576.9
ENSMUST00000102547.10
ENSMUST00000161731.5
CDS CAA 72 bp GGAGGAGGACCTCCACTGTTAGGAAGAGCTAGGACATaGGGAAGTGGTGGTGGAGGAGGTGGTGGTGGTGGT +
Preference number: 6 (lower is better)
Translates to: GGGPPLLGRART*GSGGGGGGGGG
Trigger: ACCACCACCACCACCTCCTCCACCACCACTTCCCAATGTCCTAGCTCTTCCTAACAGTGGAGGTCCTCCTCC
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000081349.9
ENSMUST00000099576.9
ENSMUST00000102547.10
ENSMUST00000161731.5
ENSMUST00000238883.2
CDS CAA 90 bp AACTCGGGGTCCGCTTCCTTCTGTTCGGTCCTTGGCATGTCAATGTaGAGCAGCTGTGATAGCTGCTCCAGGAGAGTGGGAGTGGCCTTC +
Preference number: 6 (lower is better)
Translates to: NSGSASFCSVLGMSM*SSCDSCSRRVGVAF
Trigger: GAAGGCCACTCCCACTCTCCTGGAGCAGCTATCACAGCTGCTCAACATTGACATGCCAAGGACCGAACAGAAGGAAGCGGACCCCGAGTT
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000081349.9
CDS CAA 90 bp TTGCGGAGAACCTTGTTCACAGCGGCCTCGGTGCTGGCTGGTTCTTaGGTAATGGAGGCTCTTTCTGGGGCTGAGGACCGCAATGACTTG +
Preference number: 6 (lower is better)
Translates to: LRRTLFTAASVLAGS*VMEALSGAEDRNDL
Trigger: CAAGTCATTGCGGTCCTCAGCCCCAGAAAGAGCCTCCATTACCAAAGAACCAGCCAGCACCGAGGCCGCTGTGAACAAGGTTCTCCGCAA
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000099576.9
ENSMUST00000102547.10
ENSMUST00000161731.5
CDS TCA 72 bp TGGCTGGTTTACGAGGATACTGGCTGGAAGAAGAGCTaGGTCCAAAGGACAGTCCAGGAGGAGGTGGGGGTG +
Preference number: 6 (lower is better)
Translates to: WLVYEDTGWKKS*VQRTVQEEVGV
Trigger: CACCCCCACCTCCTCCTGGACTGTCCTTTGGACTCAGCTCTTCTTCCAGCCAGTATCCTCGTAAACCAGCCA
57% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 5 transcripts:
ENSMUST00000081349.9
ENSMUST00000099576.9
ENSMUST00000102547.10
ENSMUST00000161731.5
ENSMUST00000238883.2
CDS TCA 72 bp CATTTGGTTGTGGGGGCTCCTGCTGGTGAGAACTCTTaGGCTGCCCTCCCACATCAGCATCTCCTACCTCAG +
Preference number: 6 (lower is better)
Translates to: HLVVGAPAGENS*AALPHQHLLPQ
Trigger: CTGAGGTAGGAGATGCTGATGTGGGAGGGCAGCTCAAGAGTTCTCACCAGCAGGAGCCCCCACAACCAAATG
57% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000099576.9
ENSMUST00000102547.10
ENSMUST00000161731.5
CDS TCA 72 bp CCCTCACTAGGCAGTGGTGGGAGCAGAAGGATCCTATaGTGCTGCTGTGGACTGGGACACCTTGGAGACAGA +
Preference number: 6 (lower is better)
Translates to: PSLGSGGSRRIL*CCCGLGHLGDR
Trigger: TCTGTCTCCAAGGTGTCCCAGTCCACAGCAGCATCATAGGATCCTTCTGCTCCCACCACTGCCTAGTGAGGG
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000099576.9
ENSMUST00000102547.10
ENSMUST00000161731.5
CDS TCA 72 bp GCTGGCTCCTTTGGTCTCCGTGACCTTCGTAGTAGATaGTGGCTCCAAGGTGTCAGCAGAGGGGAACCCAGA +
Preference number: 6 (lower is better)
Translates to: AGSFGLRDLRSR*WLQGVSRGEPR
Trigger: TCTGGGTTCCCCTCTGCTGACACCTTGGAGCCATCATCTACTACGAAGGTCACGGAGACCAAAGGAGCCAGC
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000099576.9
ENSMUST00000102547.10
ENSMUST00000161731.5
CDS GCA 72 bp AACAGTGCTCGCAAGGGCACCTACAGTCTGGTCTGTTaGTGCGGGTGGGATTTGAGACCCTTCTTCTGCAGC +
Preference number: 6 (lower is better)
Translates to: NSARKGTYSLVC*CGWDLRPFFCS
Trigger: GCTGCAGAAGAAGGGTCTCAAATCCCACCCGCAGCAACAGACCAGACTGTAGGTGCCCTTGCGAGCACTGTT
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000081349.9
CDS GCA 72 bp TTCGGAAGCTTCCTCAGACACCAGCCAAGTTTGGCTTaGTCTGAGGGAAGTCGGGCTGGCTCCTTTGGTCTC +
Preference number: 6 (lower is better)
Translates to: FGSFLRHQPSLA*SEGSRAGSFGL
Trigger: GAGACCAAAGGAGCCAGCCCGACTTCCCTCAGAGCAAGCCAAACTTGGCTGGTGTCTGAGGAAGCTTCCGAA
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000099576.9
ENSMUST00000102547.10
ENSMUST00000161731.5
CDS CCA 72 bp CCCCTTCTTCAGCACACGGAGCCCACTGAAGAAAGCTaGAAGCTGGAAGGGCTTCTCTTCCGGAGCTTCTCT +
Preference number: 6 (lower is better)
Translates to: PLLQHTEPTEES*KLEGLLFRSFS
Trigger: AGAGAAGCTCCGGAAGAGAAGCCCTTCCAGCTTCCAGCTTTCTTCAGTGGGCTCCGTGTGCTGAAGAAGGGG
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000081349.9
CDS CCA 72 bp CTCCTCCTGCCAGACCTCCGGGGCTTTTTGTTCTCTTaGGTGCTCCTCCTAATGAGAGAGCTCACAGGGAGT +
Preference number: 6 (lower is better)
Translates to: LLLPDLRGFLFS*VLLLMRELTGS
Trigger: ACTCCCTGTGAGCTCTCTCATTAGGAGGAGCACCCAAGAGAACAAAAAGCCCCGGAGGTCTGGCAGGAGGAG
57% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000099576.9
ENSMUST00000102547.10
ENSMUST00000161731.5
CDS CCA 72 bp AGATGTAGGATAGCAGCCTGGTATTCTGGTGGCAACTaGTGCTGGGGTGGAGCTGTGATCTTCTCTGGCCCC +
Preference number: 6 (lower is better)
Translates to: RCRIAAWYSGGN*CWGGAVIFSGP
Trigger: GGGGCCAGAGAAGATCACAGCTCCACCCCAGCACCAGTTGCCACCAGAATACCAGGCTGCTATCCTACATCT
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000161731.5
CDS CAA 72 bp CGCTGGGTCAACTTGAGCAAAGCCAGGTCCCCGTCCTaGGGTTTGATTTCAGTGATGGTCTCCCCTGCCTCT +
Preference number: 6 (lower is better)
Translates to: RWVNLSKARSPS*GLISVMVSPAS
Trigger: AGAGGCAGGGGAGACCATCACTGAAATCAAACCCAAGGACGGGGACCTGGCTTTGCTCAAGTTGACCCAGCG
57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000081349.9
CDS CAA 72 bp TTTCCCTCCTGGCTCCCCATTGAAACACCGAGGATGTaGTCTGACCTCAGCAGACTGTCCAGCAGCCTCTCC +
Preference number: 6 (lower is better)
Translates to: FPSWLPIETPRM*SDLSRLSSSLS
Trigger: GGAGAGGCTGCTGGACAGTCTGCTGAGGTCAGACAACATCCTCGGTGTTTCAATGGGGAGCCAGGAGGGAAA
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000099576.9
ENSMUST00000102547.10
ENSMUST00000161731.5
CDS CAA 72 bp GAAGGATCCTATGATGCTGCTGTGGACTGGGACACCTaGGAGACAGAGGCGAGGGAACAGGTGACAGCCGTT +
Preference number: 6 (lower is better)
Translates to: EGSYDAAVDWDT*ETEAREQVTAV
Trigger: AACGGCTGTCACCTGTTCCCTCGCCTCTGTCTCCAAGGTGTCCCAGTCCACAGCAGCATCATAGGATCCTTC
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000099576.9
ENSMUST00000102547.10
ENSMUST00000161731.5
CDS CAA 72 bp GTTTGGCTTGCTCTGAGGGAAGTCGGGCTGGCTCCTTaGGTCTCCGTGACCTTCGTAGTAGATGATGGCTCC +
Preference number: 6 (lower is better)
Translates to: VWLALREVGLAP*VSVTFVVDDGS
Trigger: GGAGCCATCATCTACTACGAAGGTCACGGAGACCAAAGGAGCCAGCCCGACTTCCCTCAGAGCAAGCCAAAC
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000099576.9
ENSMUST00000102547.10
ENSMUST00000161731.5
CDS CAA 90 bp TCCTGCAACTTTCCCTCCTGGCTCCCCATTGAAACACCGAGGATGTaGTCTGACCTCAGCAGACTGTCCAGCAGCCTCTCCTTCTCTGCT +
Preference number: 6 (lower is better)
Translates to: SCNFPSWLPIETPRM*SDLSRLSSSLSFSA
Trigger: AGCAGAGAAGGAGAGGCTGCTGGACAGTCTGCTGAGGTCAGACAACATCCTCGGTGTTTCAATGGGGAGCCAGGAGGGAAAGTTGCAGGA
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000099576.9
ENSMUST00000102547.10
ENSMUST00000161731.5
CDS CAA 90 bp ACCAGCCAAGTTTGGCTTGCTCTGAGGGAAGTCGGGCTGGCTCCTTaGGTCTCCGTGACCTTCGTAGTAGATGATGGCTCCAAGGTGTCA +
Preference number: 6 (lower is better)
Translates to: TSQVWLALREVGLAP*VSVTFVVDDGSKVS
Trigger: TGACACCTTGGAGCCATCATCTACTACGAAGGTCACGGAGACCAAAGGAGCCAGCCCGACTTCCCTCAGAGCAAGCCAAACTTGGCTGGT
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000099576.9
ENSMUST00000102547.10
ENSMUST00000161731.5
CDS TCA 72 bp TTAAGATCAGGTGGAACTGGAGCCTCTGCCTGTGGCTaGTCTGAGCCTTTGCTGGGATCACCTCGCTCAGGA +
Preference number: 6 (lower is better)
Translates to: LRSGGTGASACG*SEPLLGSPRSG
Trigger: TCCTGAGCGAGGTGATCCCAGCAAAGGCTCAGATCAGCCACAGGCAGAGGCTCCAGTTCCACCTGATCTTAA
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000081349.9
CDS TCA 72 bp CCGCTTCCTTCTGTTCGGTCCTTGGCATGTCAATGTTaGGCAGCTGTGATAGCTGCTCCAGGAGAGTGGGAG +
Preference number: 6 (lower is better)
Translates to: PLPSVRSLACQC*AAVIAAPGEWE
Trigger: CTCCCACTCTCCTGGAGCAGCTATCACAGCTGCTCAACATTGACATGCCAAGGACCGAACAGAAGGAAGCGG
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000081349.9
CDS GCA 72 bp AAGTCCTCTCCAATGACTTTGACTTCCGAGTCCTGCTaGTCCACCTCTCTGCCCCTGCATGTTTCCCATGGC +
Preference number: 6 (lower is better)
Translates to: KSSPMTLTSESC*STSLPLHVSHG
Trigger: GCCATGGGAAACATGCAGGGGCAGAGAGGTGGAGCAGCAGGACTCGGAAGTCAAAGTCATTGGAGAGGACTT
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000099576.9
ENSMUST00000102547.10
ENSMUST00000161731.5
CDS CCA 72 bp CCTACCGTGTGCGGCAGATCCAGAAGCAAGAATTTATaGCCACTCTGCGGTAGCCCAGCCTTCCTTTGGCTT +
Preference number: 6 (lower is better)
Translates to: PTVCGRSRSKNL*PLCGSPAFLWL
Trigger: AAGCCAAAGGAAGGCTGGGCTACCGCAGAGTGGCCATAAATTCTTGCTTCTGGATCTGCCGCACACGGTAGG
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000099576.9
ENSMUST00000102547.10
ENSMUST00000161731.5
CDS CCA 72 bp CCTTTTTCGGAAGCTTCCTCAGACACCAGCCAAGTTTaGCTTGCTCTGAGGGAAGTCGGGCTGGCTCCTTTG +
Preference number: 6 (lower is better)
Translates to: PFSEASSDTSQV*LALREVGLAPL
Trigger: CAAAGGAGCCAGCCCGACTTCCCTCAGAGCAAGCCAAACTTGGCTGGTGTCTGAGGAAGCTTCCGAAAAAGG
56% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000099576.9
ENSMUST00000102547.10
ENSMUST00000161731.5
CDS CAA 72 bp AAACAGTGCTCGCAAGGGCACCTACAGTCTGGTCTGTaGCTGCGGGTGGGATTTGAGACCCTTCTTCTGCAG +
Preference number: 6 (lower is better)
Translates to: KQCSQGHLQSGL*LRVGFETLLLQ
Trigger: CTGCAGAAGAAGGGTCTCAAATCCCACCCGCAGCAACAGACCAGACTGTAGGTGCCCTTGCGAGCACTGTTT
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000081349.9
CDS CAA 72 bp GTCAACTTGAGCAAAGCCAGGTCCCCGTCCTTGGGTTaGATTTCAGTGATGGTCTCCCCTGCCTCTGCGGTA +
Preference number: 6 (lower is better)
Translates to: VNLSKARSPSLG*ISVMVSPASAV
Trigger: TACCGCAGAGGCAGGGGAGACCATCACTGAAATCAAACCCAAGGACGGGGACCTGGCTTTGCTCAAGTTGAC
56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000081349.9
CDS CAA 72 bp GCCTTTTTCGGAAGCTTCCTCAGACACCAGCCAAGTTaGGCTTGCTCTGAGGGAAGTCGGGCTGGCTCCTTT +
Preference number: 6 (lower is better)
Translates to: AFFGSFLRHQPS*ACSEGSRAGSF
Trigger: AAAGGAGCCAGCCCGACTTCCCTCAGAGCAAGCCAAACTTGGCTGGTGTCTGAGGAAGCTTCCGAAAAAGGC
56% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000099576.9
ENSMUST00000102547.10
ENSMUST00000161731.5
CDS CAA 72 bp GGGGTTACTGAGCGCCTGTGTCGGCACTTCCAGACCTaGGGAACTGAAATGGGCTGCCCGTATCTTGGATTA +
Preference number: 6 (lower is better)
Translates to: GVTERLCRHFQT*GTEMGCPYLGL
Trigger: TAATCCAAGATACGGGCAGCCCATTTCAGTTCCCAAGGTCTGGAAGTGCCGACACAGGCGCTCAGTAACCCC
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000238883.2
CDS CAA 90 bp ACCTCCTGGGAGGGTGAGGAAGTCAGCTTTTGGGATAAACTCAGTTaGGGTCTCTGGGCCATAGGCAACCCTTCCCTTGCCGTCATGATG +
Preference number: 6 (lower is better)
Translates to: TSWEGEEVSFWDKLS*GLWAIGNPSLAVMM
Trigger: CATCATGACGGCAAGGGAAGGGTTGCCTATGGCCCAGAGACCCAAACTGAGTTTATCCCAAAAGCTGACTTCCTCACCCTCCCAGGAGGT
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000099576.9
ENSMUST00000102547.10
ENSMUST00000161731.5
CDS TCA 72 bp AAAGCCTTCAGAGGCAATACCTTCATCTGGGGTTACTaGGCGCCTGTGTCGGCACTTCCAGACCTTGGGAAC +
Preference number: 6 (lower is better)
Translates to: KAFRGNTFIWGY*APVSALPDLGN
Trigger: GTTCCCAAGGTCTGGAAGTGCCGACACAGGCGCTCAGTAACCCCAGATGAAGGTATTGCCTCTGAAGGCTTT
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000238883.2
CDS GCA 72 bp GTCCTTGGCATGTCAATGTTGAGCAGCTGTGATAGCTaGTCCAGGAGAGTGGGAGTGGCCTTCGGATCAGTT +
Preference number: 6 (lower is better)
Translates to: VLGMSMLSSCDS*SRRVGVAFGSV
Trigger: AACTGATCCGAAGGCCACTCCCACTCTCCTGGAGCAGCTATCACAGCTGCTCAACATTGACATGCCAAGGAC
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000081349.9
CDS GCA 72 bp TACTCATCCCCAGTGGCAAGGATTACTGACAGCTCCTaGAACTTTCCCTCCTGGCTCCCCATTGAAACACCG +
Preference number: 6 (lower is better)
Translates to: YSSPVARITDSS*NFPSWLPIETP
Trigger: CGGTGTTTCAATGGGGAGCCAGGAGGGAAAGTTGCAGGAGCTGTCAGTAATCCTTGCCACTGGGGATGAGTA
54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000099576.9
ENSMUST00000102547.10
ENSMUST00000161731.5
CDS GCA 72 bp TGCAAGTCCTCTCCAATGACTTTGACTTCCGAGTCCTaGTGCTCCACCTCTCTGCCCCTGCATGTTTCCCAT +
Preference number: 6 (lower is better)
Translates to: CKSSPMTLTSES*CSTSLPLHVSH
Trigger: ATGGGAAACATGCAGGGGCAGAGAGGTGGAGCAGCAGGACTCGGAAGTCAAAGTCATTGGAGAGGACTTGCA
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000099576.9
ENSMUST00000102547.10
ENSMUST00000161731.5
CDS CCA 72 bp CGACTGAGCCATCTCAAGTCCGGCTTCGGATTTGTCTaGTTCCAGCACATCTCTGCTGCTGAGAGAGTTACC +
Preference number: 6 (lower is better)
Translates to: RLSHLKSGFGFV*FQHISAAERVT
Trigger: GGTAACTCTCTCAGCAGCAGAGATGTGCTGGAACCAGACAAATCCGAAGCCGGACTTGAGATGGCTCAGTCG
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000081349.9
CDS CCA 72 bp GATGAGGAGGTGCCTTCTCTTGTCTGGAATGGGGCGTaGATGTCTTTGCTGTCTTTTGAGGGAGAGAGCTGG +
Preference number: 6 (lower is better)
Translates to: DEEVPSLVWNGA*MSLLSFEGESW
Trigger: CCAGCTCTCTCCCTCAAAAGACAGCAAAGACATCCACGCCCCATTCCAGACAAGAGAAGGCACCTCCTCATC
54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 5 transcripts:
ENSMUST00000081349.9
ENSMUST00000099576.9
ENSMUST00000102547.10
ENSMUST00000161731.5
ENSMUST00000238883.2
CDS CCA 72 bp GGACAGCTGGGCTCAATGGCTGGTTTACGAGGATACTaGCTGGAAGAAGAGCTGAGTCCAAAGGACAGTCCA +
Preference number: 6 (lower is better)
Translates to: GQLGSMAGLRGY*LEEELSPKDSP
Trigger: TGGACTGTCCTTTGGACTCAGCTCTTCTTCCAGCCAGTATCCTCGTAAACCAGCCATTGAGCCCAGCTGTCC
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000081349.9
ENSMUST00000099576.9
ENSMUST00000102547.10
ENSMUST00000161731.5
ENSMUST00000238883.2
CDS CCA 72 bp CTCACAGGGAGTTCTCTGCGCCAGTTGCCAGCACTCTaGAAATACTCATCCCCAGTGGCAAGGATTACTGAC +
Preference number: 6 (lower is better)
Translates to: LTGSSLRQLPAL*KYSSPVARITD
Trigger: GTCAGTAATCCTTGCCACTGGGGATGAGTATTTCCAGAGTGCTGGCAACTGGCGCAGAGAACTCCCTGTGAG
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000099576.9
ENSMUST00000102547.10
ENSMUST00000161731.5
CDS CCA 72 bp TGCATGTTTCCCATGGCTTTCAGACACATTTGGTTGTaGGGGCTCCTGCTGGTGAGAACTCTTGAGCTGCCC +
Preference number: 6 (lower is better)
Translates to: CMFPMAFRHIWL*GLLLVRTLELP
Trigger: GGGCAGCTCAAGAGTTCTCACCAGCAGGAGCCCCCACAACCAAATGTGTCTGAAAGCCATGGGAAACATGCA
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000099576.9
ENSMUST00000102547.10
ENSMUST00000161731.5
CDS CCA 72 bp CCAGCCTTCCTTTGGCTTCGAGTTTCTGGGAAAGTGTaGGTGGCCCTTGTGTTGAGAGAGAAGCCCAACCTT +
Preference number: 6 (lower is better)
Translates to: PAFLWLRVSGKV*VALVLREKPNL
Trigger: AAGGTTGGGCTTCTCTCTCAACACAAGGGCCACCCACACTTTCCCAGAAACTCGAAGCCAAAGGAAGGCTGG
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000099576.9
ENSMUST00000102547.10
ENSMUST00000161731.5
CDS CCA 72 bp CTGCCTGGAGTCCTGTCGTCCTGCTCTGTGGGGCTCTaGTCAGGGTTGAGATCCAAGTACAATTCACTTCTA +
Preference number: 6 (lower is better)
Translates to: LPGVLSSCSVGL*SGLRSKYNSLL
Trigger: TAGAAGTGAATTGTACTTGGATCTCAACCCTGACCAGAGCCCCACAGAGCAGGACGACAGGACTCCAGGCAG
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000099576.9
ENSMUST00000102547.10
ENSMUST00000238883.2
CDS CCA 72 bp GCCTGTGTCGGCACTTCCAGACCTTGGGAACTGAAATaGGCTGCCCGTATCTTGGATTATAGCGGTAGCATG +
Preference number: 6 (lower is better)
Translates to: ACVGTSRPWELK*AARILDYSGSM
Trigger: CATGCTACCGCTATAATCCAAGATACGGGCAGCCCATTTCAGTTCCCAAGGTCTGGAAGTGCCGACACAGGC
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000238883.2
CDS CCA 72 bp GGGTTACTGAGCGCCTGTGTCGGCACTTCCAGACCTTaGGAACTGAAATGGGCTGCCCGTATCTTGGATTAT +
Preference number: 6 (lower is better)
Translates to: GLLSACVGTSRP*ELKWAARILDY
Trigger: ATAATCCAAGATACGGGCAGCCCATTTCAGTTCCCAAGGTCTGGAAGTGCCGACACAGGCGCTCAGTAACCC
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000238883.2
CDS CAA 72 bp TCCGCTTCCTTCTGTTCGGTCCTTGGCATGTCAATGTaGAGCAGCTGTGATAGCTGCTCCAGGAGAGTGGGA +
Preference number: 6 (lower is better)
Translates to: SASFCSVLGMSM*SSCDSCSRRVG
Trigger: TCCCACTCTCCTGGAGCAGCTATCACAGCTGCTCAACATTGACATGCCAAGGACCGAACAGAAGGAAGCGGA
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000081349.9
CDS CAA 72 bp CTGGCTGAGGCTGGTGATGTCTGGCCCCTCCCTGACTaGGTAGCAGTTATGGAAAGCGTTATTGGATCTGTC +
Preference number: 6 (lower is better)
Translates to: LAEAGDVWPLPD*VAVMESVIGSV
Trigger: GACAGATCCAATAACGCTTTCCATAACTGCTACCAAGTCAGGGAGGGGCCAGACATCACCAGCCTCAGCCAG
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000099576.9
ENSMUST00000102547.10
ENSMUST00000161731.5
CDS CAA 72 bp CTAATGAGAGAGCTCACAGGGAGTTCTCTGCGCCAGTaGCCAGCACTCTGGAAATACTCATCCCCAGTGGCA +
Preference number: 6 (lower is better)
Translates to: LMRELTGSSLRQ*PALWKYSSPVA
Trigger: TGCCACTGGGGATGAGTATTTCCAGAGTGCTGGCAACTGGCGCAGAGAACTCCCTGTGAGCTCTCTCATTAG
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000099576.9
ENSMUST00000102547.10
ENSMUST00000161731.5
CDS CAA 72 bp CCCTGCATGTTTCCCATGGCTTTCAGACACATTTGGTaGTGGGGGCTCCTGCTGGTGAGAACTCTTGAGCTG +
Preference number: 6 (lower is better)
Translates to: PCMFPMAFRHIW*WGLLLVRTLEL
Trigger: CAGCTCAAGAGTTCTCACCAGCAGGAGCCCCCACAACCAAATGTGTCTGAAAGCCATGGGAAACATGCAGGG
54% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000099576.9
ENSMUST00000102547.10
ENSMUST00000161731.5
CDS CAA 72 bp GAGGGTGAGGAAGTCAGCTTTTGGGATAAACTCAGTTaGGGTCTCTGGGCCATAGGCAACCCTTCCCTTGCC +
Preference number: 6 (lower is better)
Translates to: EGEEVSFWDKLS*GLWAIGNPSLA
Trigger: GGCAAGGGAAGGGTTGCCTATGGCCCAGAGACCCAAACTGAGTTTATCCCAAAAGCTGACTTCCTCACCCTC
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000099576.9
ENSMUST00000102547.10
ENSMUST00000161731.5
CDS CAA 90 bp CAAGGATTACTGACAGCTCCTGCAACTTTCCCTCCTGGCTCCCCATaGAAACACCGAGGATGTTGTCTGACCTCAGCAGACTGTCCAGCA +
Preference number: 6 (lower is better)
Translates to: QGLLTAPATFPPGSP*KHRGCCLTSADCPA
Trigger: TGCTGGACAGTCTGCTGAGGTCAGACAACATCCTCGGTGTTTCAATGGGGAGCCAGGAGGGAAAGTTGCAGGAGCTGTCAGTAATCCTTG
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000099576.9
ENSMUST00000102547.10
ENSMUST00000161731.5
CDS CAA 90 bp GTGCTCCTCCTAATGAGAGAGCTCACAGGGAGTTCTCTGCGCCAGTaGCCAGCACTCTGGAAATACTCATCCCCAGTGGCAAGGATTACT +
Preference number: 6 (lower is better)
Translates to: VLLLMRELTGSSLRQ*PALWKYSSPVARIT
Trigger: AGTAATCCTTGCCACTGGGGATGAGTATTTCCAGAGTGCTGGCAACTGGCGCAGAGAACTCCCTGTGAGCTCTCTCATTAGGAGGAGCAC
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000099576.9
ENSMUST00000102547.10
ENSMUST00000161731.5
CDS CAA 90 bp CTTTTCCCCTCTGTAGCTTCGTCTAACTTCTCACTCTCTATCACCTaGCGGAGAACCTTGTTCACAGCGGCCTCGGTGCTGGCTGGTTCT +
Preference number: 6 (lower is better)
Translates to: LFPSVASSNFSLSIT*RRTLFTAASVLAGS
Trigger: AGAACCAGCCAGCACCGAGGCCGCTGTGAACAAGGTTCTCCGCAAGGTGATAGAGAGTGAGAAGTTAGACGAAGCTACAGAGGGGAAAAG
53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000099576.9
ENSMUST00000102547.10
ENSMUST00000161731.5
CDS TCA 72 bp ACTCTGGAAATACTCATCCCCAGTGGCAAGGATTACTaGCAGCTCCTGCAACTTTCCCTCCTGGCTCCCCAT +
Preference number: 6 (lower is better)
Translates to: TLEILIPSGKDY*QLLQLSLLAPH
Trigger: ATGGGGAGCCAGGAGGGAAAGTTGCAGGAGCTGTCAGTAATCCTTGCCACTGGGGATGAGTATTTCCAGAGT
53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000099576.9
ENSMUST00000102547.10
ENSMUST00000161731.5
CDS GCA 72 bp TTCTTGAAGAACTCCTCCAGTTTGTCCTTGAAAGGCTaGAGGTACTCCCTTGGGGACTCCTTGCACACCAGC +
Preference number: 6 (lower is better)
Translates to: FLKNSSSLSLKG*RYSLGDSLHTS
Trigger: GCTGGTGTGCAAGGAGTCCCCAAGGGAGTACCTGCAGCCTTTCAAGGACAAACTGGAGGAGTTCTTCAAGAA
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000081349.9
ENSMUST00000099576.9
ENSMUST00000102547.10
ENSMUST00000161731.5
ENSMUST00000238883.2
CDS GCA 72 bp TGCGGCAGATCCAGAAGCAAGAATTTATGGCCACTCTaGGGTAGCCCAGCCTTCCTTTGGCTTCGAGTTTCT +
Preference number: 6 (lower is better)
Translates to: CGRSRSKNLWPL*GSPAFLWLRVS
Trigger: AGAAACTCGAAGCCAAAGGAAGGCTGGGCTACCGCAGAGTGGCCATAAATTCTTGCTTCTGGATCTGCCGCA
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000099576.9
ENSMUST00000102547.10
ENSMUST00000161731.5
CDS CCA 72 bp GCCAGTTGCCAGCACTCTGGAAATACTCATCCCCAGTaGCAAGGATTACTGACAGCTCCTGCAACTTTCCCT +
Preference number: 6 (lower is better)
Translates to: ASCQHSGNTHPQ*QGLLTAPATFP
Trigger: AGGGAAAGTTGCAGGAGCTGTCAGTAATCCTTGCCACTGGGGATGAGTATTTCCAGAGTGCTGGCAACTGGC
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000099576.9
ENSMUST00000102547.10
ENSMUST00000161731.5
CDS CCA 72 bp AGTTTCACCTCCTGGGAGGGTGAGGAAGTCAGCTTTTaGGATAAACTCAGTTTGGGTCTCTGGGCCATAGGC +
Preference number: 6 (lower is better)
Translates to: SFTSWEGEEVSF*DKLSLGLWAIG
Trigger: GCCTATGGCCCAGAGACCCAAACTGAGTTTATCCCAAAAGCTGACTTCCTCACCCTCCCAGGAGGTGAAACT
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000099576.9
ENSMUST00000102547.10
ENSMUST00000161731.5
CDS CAA 72 bp GTGCCTTCTCTTGTCTGGAATGGGGCGTGGATGTCTTaGCTGTCTTTTGAGGGAGAGAGCTGGGTTAAGGAG +
Preference number: 6 (lower is better)
Translates to: VPSLVWNGAWMS*LSFEGESWVKE
Trigger: CTCCTTAACCCAGCTCTCTCCCTCAAAAGACAGCAAAGACATCCACGCCCCATTCCAGACAAGAGAAGGCAC
53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 5 transcripts:
ENSMUST00000081349.9
ENSMUST00000099576.9
ENSMUST00000102547.10
ENSMUST00000161731.5
ENSMUST00000238883.2
CDS CAA 72 bp TCTAACTTCTCACTCTCTATCACCTTGCGGAGAACCTaGTTCACAGCGGCCTCGGTGCTGGCTGGTTCTTTG +
Preference number: 6 (lower is better)
Translates to: SNFSLSITLRRT*FTAASVLAGSL
Trigger: CAAAGAACCAGCCAGCACCGAGGCCGCTGTGAACAAGGTTCTCCGCAAGGTGATAGAGAGTGAGAAGTTAGA
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000099576.9
ENSMUST00000102547.10
ENSMUST00000161731.5
CDS CAA 72 bp CTTCGAGTTTCTGGGAAAGTGTGGGTGGCCCTTGTGTaGAGAGAGAAGCCCAACCTTTTCCCCTCTGTAGCT +
Preference number: 6 (lower is better)
Translates to: LRVSGKVWVALV*REKPNLFPSVA
Trigger: AGCTACAGAGGGGAAAAGGTTGGGCTTCTCTCTCAACACAAGGGCCACCCACACTTTCCCAGAAACTCGAAG
53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000099576.9
ENSMUST00000102547.10
ENSMUST00000161731.5
CDS CAA 90 bp CTTCAGTGTACTTCAGTCCCACTTTTTCTTCTGTGTCCTTTGTCTTaGGGGGTGGCCAGACAGCTTGGAGTCTGCCTGGAGTCCTGTCGT +
Preference number: 6 (lower is better)
Translates to: LQCTSVPLFLLCPLS*GVARQLGVCLESCR
Trigger: ACGACAGGACTCCAGGCAGACTCCAAGCTGTCTGGCCACCCCCAAAGACAAAGGACACAGAAGAAAAAGTGGGACTGAAGTACACTGAAG
52% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 4 transcripts:
ENSMUST00000081349.9
ENSMUST00000099576.9
ENSMUST00000102547.10
ENSMUST00000238883.2
CDS CAA 90 bp GTAGCTTCGTCTAACTTCTCACTCTCTATCACCTTGCGGAGAACCTaGTTCACAGCGGCCTCGGTGCTGGCTGGTTCTTTGGTAATGGAG +
Preference number: 6 (lower is better)
Translates to: VASSNFSLSITLRRT*FTAASVLAGSLVME
Trigger: CTCCATTACCAAAGAACCAGCCAGCACCGAGGCCGCTGTGAACAAGGTTCTCCGCAAGGTGATAGAGAGTGAGAAGTTAGACGAAGCTAC
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000099576.9
ENSMUST00000102547.10
ENSMUST00000161731.5
CDS CAA 90 bp TTCCTTTGGCTTCGAGTTTCTGGGAAAGTGTGGGTGGCCCTTGTGTaGAGAGAGAAGCCCAACCTTTTCCCCTCTGTAGCTTCGTCTAAC +
Preference number: 6 (lower is better)
Translates to: FLWLRVSGKVWVALV*REKPNLFPSVASSN
Trigger: GTTAGACGAAGCTACAGAGGGGAAAAGGTTGGGCTTCTCTCTCAACACAAGGGCCACCCACACTTTCCCAGAAACTCGAAGCCAAAGGAA
51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000099576.9
ENSMUST00000102547.10
ENSMUST00000161731.5
CDS CAA 90 bp CCTCCATCCTTATTGGGAAGGTCTTTTGCCGTCTGCTCTTTGAAGTaGTCACAGGGAAAGCCTTCAGAGGCAATACCTGGTGGCAACTGG +
Preference number: 6 (lower is better)
Translates to: PPSLLGRSFAVCSLK*SQGKPSEAIPGGNW
Trigger: CCAGTTGCCACCAGGTATTGCCTCTGAAGGCTTTCCCTGTGACAACTTCAAAGAGCAGACGGCAAAAGACCTTCCCAATAAGGATGGAGG
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000099576.9
ENSMUST00000102547.10
CDS CAA 90 bp CAAACCCCTCCATCCTTATTGGGAAGGTCTTTTGCCGTCTGCTCTTaGAAGTTGTCACAGGGAAAGCCTTCAGAGGCAATACCTGGTGGC +
Preference number: 6 (lower is better)
Translates to: QTPPSLLGRSFAVCS*KLSQGKPSEAIPGG
Trigger: GCCACCAGGTATTGCCTCTGAAGGCTTTCCCTGTGACAACTTCAAAGAGCAGACGGCAAAAGACCTTCCCAATAAGGATGGAGGGGTTTG
51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000099576.9
ENSMUST00000102547.10
CDS GCA 72 bp TGCCTTCTCTTGTCTGGAATGGGGCGTGGATGTCTTTaGTGTCTTTTGAGGGAGAGAGCTGGGTTAAGGAGA +
Preference number: 6 (lower is better)
Translates to: CLLLSGMGRGCL*CLLRERAGLRR
Trigger: TCTCCTTAACCCAGCTCTCTCCCTCAAAAGACAGCAAAGACATCCACGCCCCATTCCAGACAAGAGAAGGCA
51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 5 transcripts:
ENSMUST00000081349.9
ENSMUST00000099576.9
ENSMUST00000102547.10
ENSMUST00000161731.5
ENSMUST00000238883.2
CDS GCA 72 bp GACCCAAACCCCTCCATCCTTATTGGGAAGGTCTTTTaGCGTCTGCTCTTTGAAGTTGTCACAGGGAAAGCC +
Preference number: 6 (lower is better)
Translates to: DPNPSILIGKVF*RLLFEVVTGKA
Trigger: GGCTTTCCCTGTGACAACTTCAAAGAGCAGACGGCAAAAGACCTTCCCAATAAGGATGGAGGGGTTTGGGTC
51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000099576.9
ENSMUST00000102547.10
ENSMUST00000238883.2
CDS CAA 72 bp GTCCTGTCGTCCTGCTCTGTGGGGCTCTGGTCAGGGTaGAGATCCAAGTACAATTCACTTCTACTTGTCTTC +
Preference number: 6 (lower is better)
Translates to: VLSSCSVGLWSG*RSKYNSLLLVF
Trigger: GAAGACAAGTAGAAGTGAATTGTACTTGGATCTCAACCCTGACCAGAGCCCCACAGAGCAGGACGACAGGAC
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000099576.9
ENSMUST00000102547.10
ENSMUST00000238883.2
CDS CAA 90 bp GCTCTGCCGGATGGCTACCATCACCACCAAGTTCCAGTTTGCTACTaGTCTCAGGTAAAGTTCTCTGAGACTCTTCAGCACAGAGTTCTG +
Preference number: 6 (lower is better)
Translates to: ALPDGYHHHQVPVCY*SQVKFSETLQHRVL
Trigger: CAGAACTCTGTGCTGAAGAGTCTCAGAGAACTTTACCTGAGACAAGTAGCAAACTGGAACTTGGTGGTGATGGTAGCCATCCGGCAGAGC
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000081349.9
CDS CAA 90 bp GAGATAGTCAGCTTCTTGGGTACTATCTGGCTGCTTCTGGTTGCTTaGCTTTCAGCATCACAGGGCTTGAGGAAGGTCTCTCTGTCTGTC +
Preference number: 6 (lower is better)
Translates to: EIVSFLGTIWLLLVA*LSASQGLRKVSLSV
Trigger: GACAGACAGAGAGACCTTCCTCAAGCCCTGTGATGCTGAAAGCAAAGCAACCAGAAGCAGCCAGATAGTACCCAAGAAGCTGACTATCTC
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000081349.9
ENSMUST00000099576.9
ENSMUST00000102547.10
ENSMUST00000161731.5
ENSMUST00000238883.2
CDS CAA 90 bp ACTCCCTTGGGGACTCCTTGCACACCAGCTTCATCTGTTGCTCACTaGCTTCTAGTTGACGCTTCAGCTTCCTCAAATCCTTTAGGAGGT +
Preference number: 6 (lower is better)
Translates to: TPLGTPCTPASSVAH*LLVDASASSNPLGG
Trigger: ACCTCCTAAAGGATTTGAGGAAGCTGAAGCGTCAACTAGAAGCAAGTGAGCAACAGATGAAGCTGGTGTGCAAGGAGTCCCCAAGGGAGT
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000081349.9
ENSMUST00000099576.9
ENSMUST00000102547.10
ENSMUST00000161731.5
ENSMUST00000238883.2
CDS TCA 72 bp GAGGGAACAGGTGACAGCCGTTTGTGTGCGCTGGACTaGGGCGATGAATTATTAAATACCATGCCAAGAGCT +
Preference number: 6 (lower is better)
Translates to: EGTGDSRLCALD*GDELLNTMPRA
Trigger: AGCTCTTGGCATGGTATTTAATAATTCATCGCCTCAGTCCAGCGCACACAAACGGCTGTCACCTGTTCCCTC
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000099576.9
ENSMUST00000102547.10
ENSMUST00000161731.5
CDS TCA 72 bp TCCTGTCGTCCTGCTCTGTGGGGCTCTGGTCAGGGTTaGGATCCAAGTACAATTCACTTCTACTTGTCTTCT +
Preference number: 6 (lower is better)
Translates to: SCRPALWGSGQG*DPSTIHFYLSS
Trigger: AGAAGACAAGTAGAAGTGAATTGTACTTGGATCTCAACCCTGACCAGAGCCCCACAGAGCAGGACGACAGGA
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000099576.9
ENSMUST00000102547.10
ENSMUST00000238883.2
CDS GCA 72 bp GACCTCTCGAACACAGCGCGTAGTGACTCCTTCTCATaGTTCATCTTTCGCTTAAGAGCTTCCAGCTCAGAA +
Preference number: 6 (lower is better)
Translates to: DLSNTARSDSFS*FIFRLRASSSE
Trigger: TTCTGAGCTGGAAGCTCTTAAGCGAAAGATGAAGCATGAGAAGGAGTCACTACGCGCTGTGTTCGAGAGGTC
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000081349.9
CDS GCA 72 bp AGTCAGCTTCTTGGGTACTATCTGGCTGCTTCTGGTTaGTTTGCTTTCAGCATCACAGGGCTTGAGGAAGGT +
Preference number: 6 (lower is better)
Translates to: SQLLGYYLAASG*FAFSITGLEEG
Trigger: ACCTTCCTCAAGCCCTGTGATGCTGAAAGCAAAGCAACCAGAAGCAGCCAGATAGTACCCAAGAAGCTGACT
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000081349.9
ENSMUST00000099576.9
ENSMUST00000102547.10
ENSMUST00000161731.5
ENSMUST00000238883.2
CDS CAA 72 bp AGCTTCTTGGGTACTATCTGGCTGCTTCTGGTTGCTTaGCTTTCAGCATCACAGGGCTTGAGGAAGGTCTCT +
Preference number: 6 (lower is better)
Translates to: SFLGTIWLLLVA*LSASQGLRKVS
Trigger: AGAGACCTTCCTCAAGCCCTGTGATGCTGAAAGCAAAGCAACCAGAAGCAGCCAGATAGTACCCAAGAAGCT
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000081349.9
ENSMUST00000099576.9
ENSMUST00000102547.10
ENSMUST00000161731.5
ENSMUST00000238883.2
CDS CAA 72 bp GAGGGAGAGAGCTGGGTTAAGGAGATAGTCAGCTTCTaGGGTACTATCTGGCTGCTTCTGGTTGCTTTGCTT +
Preference number: 6 (lower is better)
Translates to: EGESWVKEIVSF*GTIWLLLVALL
Trigger: AAGCAAAGCAACCAGAAGCAGCCAGATAGTACCCAAGAAGCTGACTATCTCCTTAACCCAGCTCTCTCCCTC
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000081349.9
ENSMUST00000099576.9
ENSMUST00000102547.10
ENSMUST00000161731.5
ENSMUST00000238883.2
CDS TCA 72 bp CTTGTCTGTTCCAGCTTCCTGCTTGAGTTCCAGTCCTaGCTTCCTTTGGGGATGAACAGCAATGTGGAAGTA +
Preference number: 6 (lower is better)
Translates to: LVCSSFLLEFQS*LPLGMNSNVEV
Trigger: TACTTCCACATTGCTGTTCATCCCCAAAGGAAGTCAGGACTGGAACTCAAGCAGGAAGCTGGAACAGACAAG
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000102547.10
CDS GCA 72 bp CTGCCGGATGGCTACCATCACCACCAAGTTCCAGTTTaGTACTTGTCTCAGGTAAAGTTCTCTGAGACTCTT +
Preference number: 6 (lower is better)
Translates to: LPDGYHHHQVPV*YLSQVKFSETL
Trigger: AAGAGTCTCAGAGAACTTTACCTGAGACAAGTAGCAAACTGGAACTTGGTGGTGATGGTAGCCATCCGGCAG
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000081349.9
CDS CCA 72 bp ATACAAAGGTTTCATAGGACAGCTGGGCTCAATGGCTaGTTTACGAGGATACTGGCTGGAAGAAGAGCTGAG +
Preference number: 6 (lower is better)
Translates to: IQRFHRTAGLNG*FTRILAGRRAE
Trigger: CTCAGCTCTTCTTCCAGCCAGTATCCTCGTAAACCAGCCATTGAGCCCAGCTGTCCTATGAAACCTTTGTAT
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000081349.9
ENSMUST00000099576.9
ENSMUST00000102547.10
ENSMUST00000161731.5
ENSMUST00000238883.2
CDS CAA 72 bp TTTTTGGCTTTCTTGAAGAACTCCTCCAGTTTGTCCTaGAAAGGCTGCAGGTACTCCCTTGGGGACTCCTTG +
Preference number: 6 (lower is better)
Translates to: FLAFLKNSSSLS*KGCRYSLGDSL
Trigger: CAAGGAGTCCCCAAGGGAGTACCTGCAGCCTTTCAAGGACAAACTGGAGGAGTTCTTCAAGAAAGCCAAAAA
49% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 5 transcripts:
ENSMUST00000081349.9
ENSMUST00000099576.9
ENSMUST00000102547.10
ENSMUST00000161731.5
ENSMUST00000238883.2
CDS TCA 72 bp CATCCTTATTGGGAAGGTCTTTTGCCGTCTGCTCTTTaGAGTTGTCACAGGGAAAGCCTTCAGAGGCAATAC +
Preference number: 6 (lower is better)
Translates to: HPYWEGLLPSAL*SCHRESLQRQY
Trigger: GTATTGCCTCTGAAGGCTTTCCCTGTGACAACTTCAAAGAGCAGACGGCAAAAGACCTTCCCAATAAGGATG
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000099576.9
ENSMUST00000102547.10
ENSMUST00000238883.2
CDS GCA 72 bp AGAATGAGAGCTAAGATATCCTTCACACTCTTCATGTaGAACAAGCCCTTCGAGGCCCGTGTGACAATCTCT +
Preference number: 6 (lower is better)
Translates to: RMRAKISFTLFM*NKPFEARVTIS
Trigger: AGAGATTGTCACACGGGCCTCGAAGGGCTTGTTGCACATGAAGAGTGTGAAGGATATCTTAGCTCTCATTCT
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000081349.9
ENSMUST00000099576.9
ENSMUST00000102547.10
ENSMUST00000161731.5
ENSMUST00000238883.2
CDS GCA 72 bp GAATCTTGGCCACCACTTTGGAAACAGGTTTCTTACTaGAAGTCCTCTCCAATGACTTTGACTTCCGAGTCC +
Preference number: 6 (lower is better)
Translates to: ESWPPLWKQVSY*KSSPMTLTSES
Trigger: GGACTCGGAAGTCAAAGTCATTGGAGAGGACTTGCAGTAAGAAACCTGTTTCCAAAGTGGTGGCCAAGATTC
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000099576.9
ENSMUST00000102547.10
ENSMUST00000161731.5
CDS CCA 72 bp TGGGTTAAGGAGATAGTCAGCTTCTTGGGTACTATCTaGCTGCTTCTGGTTGCTTTGCTTTCAGCATCACAG +
Preference number: 6 (lower is better)
Translates to: WVKEIVSFLGTI*LLLVALLSASQ
Trigger: CTGTGATGCTGAAAGCAAAGCAACCAGAAGCAGCCAGATAGTACCCAAGAAGCTGACTATCTCCTTAACCCA
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000081349.9
ENSMUST00000099576.9
ENSMUST00000102547.10
ENSMUST00000161731.5
ENSMUST00000238883.2
CDS CAA 72 bp CCATCCTTATTGGGAAGGTCTTTTGCCGTCTGCTCTTaGAAGTTGTCACAGGGAAAGCCTTCAGAGGCAATA +
Preference number: 6 (lower is better)
Translates to: PSLLGRSFAVCS*KLSQGKPSEAI
Trigger: TATTGCCTCTGAAGGCTTTCCCTGTGACAACTTCAAAGAGCAGACGGCAAAAGACCTTCCCAATAAGGATGG
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000099576.9
ENSMUST00000102547.10
ENSMUST00000238883.2
CDS TCA 72 bp AACAGGGATTTCATAGAGAATTTACTCAGGATCGACTaGGCCATCTCAAGTCCGGCTTCGGATTTGTCTGGT +
Preference number: 6 (lower is better)
Translates to: NRDFIENLLRID*AISSPASDLSG
Trigger: ACCAGACAAATCCGAAGCCGGACTTGAGATGGCTCAGTCGATCCTGAGTAAATTCTCTATGAAATCCCTGTT
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000081349.9
CDS TCA 72 bp TTACTAATGCGTGCTCACCCCGGATGTGAAATGTCTTaGGTTCAAACTGAGCCTGCAGGGTTTCGATTTCTT +
Preference number: 6 (lower is better)
Translates to: LLMRAHPGCEMS*VQTEPAGFRFL
Trigger: AAGAAATCGAAACCCTGCAGGCTCAGTTTGAACTCAAGACATTTCACATCCGGGGTGAGCACGCATTAGTAA
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000081349.9
ENSMUST00000099576.9
ENSMUST00000102547.10
ENSMUST00000161731.5
ENSMUST00000238883.2
CDS TCA 72 bp GCCCTAACTATTCGTTTTACTGGGGCAGATGGTTCCTaGATCTTGGCCACCACTTTGGAAACAGGTTTCTTA +
Preference number: 6 (lower is better)
Translates to: ALTIRFTGADGS*ILATTLETGFL
Trigger: TAAGAAACCTGTTTCCAAAGTGGTGGCCAAGATTCAGGAACCATCTGCCCCAGTAAAACGAATAGTTAGGGC
46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000099576.9
ENSMUST00000102547.10
ENSMUST00000161731.5
CDS CCA 72 bp TCTGTCTGTCTGGATGCACACATTTCTGAAAGCCTTTaGAGAGCAGTCATCATCTGTGGAAATGCACACATC +
Preference number: 6 (lower is better)
Translates to: SVCLDAHISESL*RAVIICGNAHI
Trigger: GATGTGTGCATTTCCACAGATGATGACTGCTCTCCAAAGGCTTTCAGAAATGTGTGCATCCAGACAGACAGA
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000081349.9
ENSMUST00000099576.9
ENSMUST00000102547.10
ENSMUST00000161731.5
ENSMUST00000238883.2
CDS CCA 72 bp GAATTATTAAATACCATGCCAAGAGCTGTTGGAACCTaGGGGGTTGGCTTCTTCTCATCGCATTTGGGTTGT +
Preference number: 6 (lower is better)
Translates to: ELLNTMPRAVGT*GVGFFSSHLGC
Trigger: ACAACCCAAATGCGATGAGAAGAAGCCAACCCCCCAGGTTCCAACAGCTCTTGGCATGGTATTTAATAATTC
46% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000099576.9
ENSMUST00000102547.10
ENSMUST00000161731.5
CDS CAA 72 bp GCCCTGAAGATTATGCACTGGGCACGTTCGGCAAAATaGGGAATCTGGGCTAACTCATGCAAAAATTGTTCA +
Preference number: 6 (lower is better)
Translates to: ALKIMHWARSAK*GIWANSCKNCS
Trigger: TGAACAATTTTTGCATGAGTTAGCCCAGATTCCCAATTTTGCCGAACGTGCCCAGTGCATAATCTTCAGGGC
46% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 5 transcripts:
ENSMUST00000081349.9
ENSMUST00000099576.9
ENSMUST00000102547.10
ENSMUST00000161731.5
ENSMUST00000238883.2
CDS TCA 72 bp TCCTGCTTGAGTTCCAGTCCTGACTTCCTTTGGGGATaGACAGCAATGTGGAAGTATAAGCTGAATAAATCC +
Preference number: 6 (lower is better)
Translates to: SCLSSSPDFLWG*TAMWKYKLNKS
Trigger: GGATTTATTCAGCTTATACTTCCACATTGCTGTTCATCCCCAAAGGAAGTCAGGACTGGAACTCAAGCAGGA
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000102547.10
CDS CCA 72 bp ATTATGCACTGGGCACGTTCGGCAAAATTGGGAATCTaGGCTAACTCATGCAAAAATTGTTCAGGTTTGTCC +
Preference number: 6 (lower is better)
Translates to: IMHWARSAKLGI*ANSCKNCSGLS
Trigger: GGACAAACCTGAACAATTTTTGCATGAGTTAGCCCAGATTCCCAATTTTGCCGAACGTGCCCAGTGCATAAT
44% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 5 transcripts:
ENSMUST00000081349.9
ENSMUST00000099576.9
ENSMUST00000102547.10
ENSMUST00000161731.5
ENSMUST00000238883.2
CDS GCA 72 bp CCTTTCCTCTGCAACTTGCTTCTTGGTCATGATGTTTaGACTGATCATAGTATCGCAGGTAGTACTTCACAA +
Preference number: 6 (lower is better)
Translates to: PFLCNLLLGHDV*TDHSIAGSTSQ
Trigger: TTGTGAAGTACTACCTGCGATACTATGATCAGTGCAAACATCATGACCAAGAAGCAAGTTGCAGAGGAAAGG
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000102547.10
CDS CCA 72 bp CTTTGGGCTCTTGAGAAGGTTCACATAAAACAACAGTaGTGGGCTTTTGGGTATCAAGGCTACTTTCTTCTT +
Preference number: 6 (lower is better)
Translates to: LWALEKVHIKQQ*WAFGYQGYFLL
Trigger: AAGAAGAAAGTAGCCTTGATACCCAAAAGCCCACCACTGTTGTTTTATGTGAACCTTCTCAAGAGCCCAAAG
43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000081349.9
CDS TCA 72 bp TCCTTTGGGGATGAACAGCAATGTGGAAGTATAAGCTaGATAAATCCTTTCCTCTGCAACTTGCTTCTTGGT +
Preference number: 6 (lower is better)
Translates to: SFGDEQQCGSIS*INPFLCNLLLG
Trigger: ACCAAGAAGCAAGTTGCAGAGGAAAGGATTTATTCAGCTTATACTTCCACATTGCTGTTCATCCCCAAAGGA
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000102547.10
CDS TCA 72 bp GAGAATAAATATTCAAATTCACTTGTGTCCCTAATATaGGGCTCTTCTAAGGAGTCCCATAAAGTTGGTGCG +
Preference number: 6 (lower is better)
Translates to: ENKYSNSLVSLI*GSSKESHKVGA
Trigger: CGCACCAACTTTATGGGACTCCTTAGAAGAGCCTCATATTAGGGACACAAGTGAATTTGAATATTTATTCTC
39% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000081349.9
ENSMUST00000099576.9
ENSMUST00000102547.10
ENSMUST00000161731.5
ENSMUST00000238883.2
CDS TCA 72 bp TCTAGATGTAAACTAGATATCAAGATTCCCACAGTTTaGGATCGCTTTCCATCCAATAACTTGATGATCTTT +
Preference number: 6 (lower is better)
Translates to: SRCKLDIKIPTV*DRFPSNNLMIF
Trigger: AAAGATCATCAAGTTATTGGATGGAAAGCGATCTCAAACTGTGGGAATCTTGATATCTAGTTTACATCTAGA
35% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000081349.9
ENSMUST00000099576.9
ENSMUST00000102547.10
ENSMUST00000161731.5
ENSMUST00000238883.2