Pregenerated sensors for FMC1 (Mus musculus)
Ensembl gene IDs: ENSMUSG00000019689Ensembl transcript IDs: ENSMUST00000019833.5
Found 23 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
Type | Sensor | Details |
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CDS-3UTR TCA 90 bp | ATATTGTTAGAAATGGTTAAACTCTTGAATGAAGGAACATCTGAGGACTCTCTGCCCTTCCCTCCAGGCTaGCGGGGCAACTGGAGGCCC | + |
Preference number: 4 (lower is better) Translates to: ILLEMVKLLNEGTSEDSLPFPPG*RGNWRP Trigger: GGGCCTCCAGTTGCCCCGTCAGCCTGGAGGGAAGGG...CAGAGAGTCCTCAGATGTTCCTTCATTCAAGAGTTTAACCATTTCTAACAATAT 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000019833.5 |
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CDS-3UTR CCA 90 bp | ATATTGTTAGAAATGGTTAAACTCTTGAATGAAGGAACATCTGAGGACTCTCTGCGCTGTGTCGCGATATaGCCGCCCGGTGGCCGCGTT | + |
Preference number: 4 (lower is better) Translates to: ILLEMVKLLNEGTSEDSLRCVAI*PPGGRV Trigger: AACGCGGCCACCGGGCGGCCATATCGCGACACAGCG...CAGAGAGTCCTCAGATGTTCCTTCATTCAAGAGTTTAACCATTTCTAACAATAT 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000019833.5 |
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CDS-3UTR CCA 90 bp | ATATTGTTAGAAATGGTTAAACTCTTGAATGAAGGAACATCTGAGGACTCTCTGGATATGGCCGCCCGGTaGCCGCGTTCAGGTAGCGCA | + |
Preference number: 4 (lower is better) Translates to: ILLEMVKLLNEGTSEDSLDMAAR*PRSGSA Trigger: TGCGCTACCTGAACGCGGCCACCGGGCGGCCATATC...CAGAGAGTCCTCAGATGTTCCTTCATTCAAGAGTTTAACCATTTCTAACAATAT 48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000019833.5 |
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CDS-3UTR TCA 90 bp | ATATTGTTAGAAATGGTTAAACTCTTGAATGAAGGAACATCTGAGGACTCTCTGAGCAGACTCCTCCACTaGACGCTCACCCTTGCCATG | + |
Preference number: 4 (lower is better) Translates to: ILLEMVKLLNEGTSEDSLSRLLH*TLTLAM Trigger: CATGGCAAGGGTGAGCGTTCAGTGGAGGAGTCTGCT...CAGAGAGTCCTCAGATGTTCCTTCATTCAAGAGTTTAACCATTTCTAACAATAT 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000019833.5 |
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CDS-3UTR TCA 90 bp | ATATTGTTAGAAATGGTTAAACTCTTGAATGAAGGAACATCTGAGGACTCTCTGGTGGCAGCTTGGAAGTaGAGTTCGTGTTGGGCTCTA | + |
Preference number: 4 (lower is better) Translates to: ILLEMVKLLNEGTSEDSLVAAWK*SSCWAL Trigger: TAGAGCCCAACACGAACTTCACTTCCAAGCTGCCAC...CAGAGAGTCCTCAGATGTTCCTTCATTCAAGAGTTTAACCATTTCTAACAATAT 42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000019833.5 |
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CDS-3UTR GCA 90 bp | ATATTGTTAGAAATGGTTAAACTCTTGAATGAAGGAACATCTGAGGACTCTCTGCTACATGTTGCCGGATaGTACTCAAAAGGCAGAGAT | + |
Preference number: 4 (lower is better) Translates to: ILLEMVKLLNEGTSEDSLLHVAG*YSKGRD Trigger: ATCTCTGCCTTTTGAGTAGCATCCGGCAACATGTAG...CAGAGAGTCCTCAGATGTTCCTTCATTCAAGAGTTTAACCATTTCTAACAATAT 39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000019833.5 |
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CDS-3UTR GCA 90 bp | ATATTGTTAGAAATGGTTAAACTCTTGAATGAAGGAACATCTGAGGACTCTCTGCTGAACGCTCACCCTTaGCATGAAATTCCTGATGAA | + |
Preference number: 4 (lower is better) Translates to: ILLEMVKLLNEGTSEDSLLNAHP*HEIPDE Trigger: TTCATCAGGAATTTCATGGCAAGGGTGAGCGTTCAG...CAGAGAGTCCTCAGATGTTCCTTCATTCAAGAGTTTAACCATTTCTAACAATAT 39% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000019833.5 |
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CDS-3UTR CCA 90 bp | ATATTGTTAGAAATGGTTAAACTCTTGAATGAAGGAACATCTGAGGACTCTCTGAAAGGCAGAGATAGGTaGCAGCTTGGAAGTGAAGTT | + |
Preference number: 4 (lower is better) Translates to: ILLEMVKLLNEGTSEDSLKGRDR*QLGSEV Trigger: AACTTCACTTCCAAGCTGCCACCTATCTCTGCCTTT...CAGAGAGTCCTCAGATGTTCCTTCATTCAAGAGTTTAACCATTTCTAACAATAT 39% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000019833.5 |
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CDS CCA 90 bp | TCGGAAAGCCTTAACGAGGTACCGGTAGGCCGCTGTGTCGCGATATaGCCGCCCGGTGGCCGCGTTCAGGTAGCGCAGCTCCCTCAGAAG | + |
Preference number: 5 (lower is better) Translates to: SESLNEVPVGRCVAI*PPGGRVQVAQLPQK Trigger: CTTCTGAGGGAGCTGCGCTACCTGAACGCGGCCACCGGGCGGCCATATCGCGACACAGCGGCCTACCGGTACCTCGTTAAGGCTTTCCGA 64% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000019833.5 |
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CDS GCA 90 bp | GGAGGCCCACTAAACCAGCAGACTCCTCCACTGAACGCTCACCCTTaGCATGAAATTCCTGATGAAGGGCTACATGTTGCCGGATGCTAC | + |
Preference number: 5 (lower is better) Translates to: GGPLNQQTPPLNAHP*HEIPDEGLHVAGCY Trigger: GTAGCATCCGGCAACATGTAGCCCTTCATCAGGAATTTCATGGCAAGGGTGAGCGTTCAGTGGAGGAGTCTGCTGGTTTAGTGGGCCTCC 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000019833.5 |
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CDS CCA 90 bp | GAAGGGCTACATGTTGCCGGATGCTACTCAAAAGGCAGAGATAGGTaGCAGCTTGGAAGTGAAGTTCGTGTTGGGCTCTACACAACTTCT | + |
Preference number: 5 (lower is better) Translates to: EGLHVAGCYSKGRDR*QLGSEVRVGLYTTS Trigger: AGAAGTTGTGTAGAGCCCAACACGAACTTCACTTCCAAGCTGCCACCTATCTCTGCCTTTTGAGTAGCATCCGGCAACATGTAGCCCTTC 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000019833.5 |
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CDS GCA 90 bp | CACCCTTGCCATGAAATTCCTGATGAAGGGCTACATGTTGCCGGATaGTACTCAAAAGGCAGAGATAGGTGGCAGCTTGGAAGTGAAGTT | + |
Preference number: 5 (lower is better) Translates to: HPCHEIPDEGLHVAG*YSKGRDRWQLGSEV Trigger: AACTTCACTTCCAAGCTGCCACCTATCTCTGCCTTTTGAGTAGCATCCGGCAACATGTAGCCCTTCATCAGGAATTTCATGGCAAGGGTG 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000019833.5 |
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CDS-3UTR CAA 90 bp | ATATTGTTAGAAATGGTTAAACTCTTGAATGAAGGAACATCTGAGGACTCTCTGGAGATAGGTGGCAGCTaGGAAGTGAAGTTCGTGTTG | + |
Preference number: 5 (lower is better) Translates to: ILLEMVKLLNEGTSEDSLEIGGS*EVKFVL Trigger: CAACACGAACTTCACTTCCAAGCTGCCACCTATCTC...CAGAGAGTCCTCAGATGTTCCTTCATTCAAGAGTTTAACCATTTCTAACAATAT 41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000019833.5 |
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CDS-3UTR CAA 90 bp | ATATTGTTAGAAATGGTTAAACTCTTGAATGAAGGAACATCTGAGGACTCTCTGATGAAGGGCTACATGTaGCCGGATGCTACTCAAAAG | + |
Preference number: 5 (lower is better) Translates to: ILLEMVKLLNEGTSEDSLMKGYM*PDATQK Trigger: CTTTTGAGTAGCATCCGGCAACATGTAGCCCTTCAT...CAGAGAGTCCTCAGATGTTCCTTCATTCAAGAGTTTAACCATTTCTAACAATAT 40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000019833.5 |
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CDS CCA 72 bp | ACCGGTAGGCCGCTGTGTCGCGATATGGCCGCCCGGTaGCCGCGTTCAGGTAGCGCAGCTCCCTCAGAAGGC | + |
Preference number: 6 (lower is better) Translates to: TGRPLCRDMAAR*PRSGSAAPSEG Trigger: GCCTTCTGAGGGAGCTGCGCTACCTGAACGCGGCCACCGGGCGGCCATATCGCGACACAGCGGCCTACCGGT 69% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000019833.5 |
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CDS CCA 72 bp | CTTAACGAGGTACCGGTAGGCCGCTGTGTCGCGATATaGCCGCCCGGTGGCCGCGTTCAGGTAGCGCAGCTC | + |
Preference number: 6 (lower is better) Translates to: LNEVPVGRCVAI*PPGGRVQVAQL Trigger: GAGCTGCGCTACCTGAACGCGGCCACCGGGCGGCCATATCGCGACACAGCGGCCTACCGGTACCTCGTTAAG 67% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000019833.5 |
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CDS GCA 72 bp | TTGGGCTCTACACAACTTCTCACTGGTAACCCGATGTaGTCGGAAAGCCTTAACGAGGTACCGGTAGGCCGC | + |
Preference number: 6 (lower is better) Translates to: LGSTQLLTGNPM*SESLNEVPVGR Trigger: GCGGCCTACCGGTACCTCGTTAAGGCTTTCCGAGCACATCGGGTTACCAGTGAGAAGTTGTGTAGAGCCCAA 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000019833.5 |
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CDS CCA 72 bp | CATGTTGCCGGATGCTACTCAAAAGGCAGAGATAGGTaGCAGCTTGGAAGTGAAGTTCGTGTTGGGCTCTAC | + |
Preference number: 6 (lower is better) Translates to: HVAGCYSKGRDR*QLGSEVRVGLY Trigger: GTAGAGCCCAACACGAACTTCACTTCCAAGCTGCCACCTATCTCTGCCTTTTGAGTAGCATCCGGCAACATG 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000019833.5 |
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CDS CAA 72 bp | GCAGAGATAGGTGGCAGCTTGGAAGTGAAGTTCGTGTaGGGCTCTACACAACTTCTCACTGGTAACCCGATG | + |
Preference number: 6 (lower is better) Translates to: AEIGGSLEVKFV*GSTQLLTGNPM Trigger: CATCGGGTTACCAGTGAGAAGTTGTGTAGAGCCCAACACGAACTTCACTTCCAAGCTGCCACCTATCTCTGC 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000019833.5 |
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CDS CAA 90 bp | ACTCAAAAGGCAGAGATAGGTGGCAGCTTGGAAGTGAAGTTCGTGTaGGGCTCTACACAACTTCTCACTGGTAACCCGATGTGCTCGGAA | + |
Preference number: 6 (lower is better) Translates to: TQKAEIGGSLEVKFV*GSTQLLTGNPMCSE Trigger: TTCCGAGCACATCGGGTTACCAGTGAGAAGTTGTGTAGAGCCCAACACGAACTTCACTTCCAAGCTGCCACCTATCTCTGCCTTTTGAGT 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000019833.5 |
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CDS CAA 72 bp | ACCCTTGCCATGAAATTCCTGATGAAGGGCTACATGTaGCCGGATGCTACTCAAAAGGCAGAGATAGGTGGC | + |
Preference number: 6 (lower is better) Translates to: TLAMKFLMKGYM*PDATQKAEIGG Trigger: GCCACCTATCTCTGCCTTTTGAGTAGCATCCGGCAACATGTAGCCCTTCATCAGGAATTTCATGGCAAGGGT 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000019833.5 |
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CDS CAA 90 bp | TACATGTTGCCGGATGCTACTCAAAAGGCAGAGATAGGTGGCAGCTaGGAAGTGAAGTTCGTGTTGGGCTCTACACAACTTCTCACTGGT | + |
Preference number: 6 (lower is better) Translates to: YMLPDATQKAEIGGS*EVKFVLGSTQLLTG Trigger: ACCAGTGAGAAGTTGTGTAGAGCCCAACACGAACTTCACTTCCAAGCTGCCACCTATCTCTGCCTTTTGAGTAGCATCCGGCAACATGTA 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000019833.5 |
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CDS GCA 72 bp | CATGAAATTCCTGATGAAGGGCTACATGTTGCCGGATaGTACTCAAAAGGCAGAGATAGGTGGCAGCTTGGA | + |
Preference number: 6 (lower is better) Translates to: HEIPDEGLHVAG*YSKGRDRWQLG Trigger: TCCAAGCTGCCACCTATCTCTGCCTTTTGAGTAGCATCCGGCAACATGTAGCCCTTCATCAGGAATTTCATG 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000019833.5 |