RADAR | Search for sensor designs | Human genes | Mouse genes | Code

Pregenerated sensors for FLT1 (Mus musculus)

Ensembl gene IDs: ENSMUSG00000029648

Ensembl transcript IDs: ENSMUST00000031653.12, ENSMUST00000110529.6

Found 324 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).

Type Sensor Details
3UTR CCA 90 bp GAGCTAATGGGCTTACTGCCTCTAGTCCCACAGCTGCAGGGAGGGTaGGTGGGGCCATGGCCGGTGGGCGGGGCGGTCGCCAGAGGCACC +
Preference number: 1 (lower is better)
Translates to: ELMGLLPLVPQLQGG*VGPWPVGGAVARGT
Trigger: GGTGCCTCTGGCGACCGCCCCGCCCACCGGCCATGGCCCCACCCACCCTCCCTGCAGCTGTGGGACTAGAGGCAGTAAGCCCATTAGCTC
70% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000031653.12
3UTR TCA 90 bp TTGGAAGGGGGCCCGAAACAGCGGAGGCCAGGAGTGAGAAGTCACTaGAGTGGCATAGCGGAGCCCCCTCCTGCACGGGCTCCACAGGAC +
Preference number: 1 (lower is better)
Translates to: LEGGPKQRRPGVRSH*SGIAEPPPARAPQD
Trigger: GTCCTGTGGAGCCCGTGCAGGAGGGGGCTCCGCTATGCCACTTCAGTGACTTCTCACTCCTGGCCTCCGCTGTTTCGGGCCCCCTTCCAA
64% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 1 transcripts:
ENSMUST00000031653.12
3UTR GCA 90 bp GAAGAAACCAGGCTGGTGAGTTCCCAGGCTCGAGGGCTGCCATGCTaGCACCGCCACAACACAGAACTGCCCAGCCATGTGCTTCTCAAG +
Preference number: 1 (lower is better)
Translates to: EETRLVSSQARGLPC*HRHNTELPSHVLLK
Trigger: CTTGAGAAGCACATGGCTGGGCAGTTCTGTGTTGTGGCGGTGGCAGCATGGCAGCCCTCGAGCCTGGGAACTCACCAGCCTGGTTTCTTC
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000110529.6
3UTR GCA 90 bp GAAGAAGAAACCAGGCTGGTGAGTTCCCAGGCTCGAGGGCTGCCATaGTGCCACCGCCACAACACAGAACTGCCCAGCCATGTGCTTCTC +
Preference number: 1 (lower is better)
Translates to: EEETRLVSSQARGLP*CHRHNTELPSHVLL
Trigger: GAGAAGCACATGGCTGGGCAGTTCTGTGTTGTGGCGGTGGCAGCATGGCAGCCCTCGAGCCTGGGAACTCACCAGCCTGGTTTCTTCTTC
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000110529.6
3UTR TCA 90 bp CCAGTGTGGCTAGAAGCCCTTTCCTACTTGTCTAGTCCTGGCTGGTaGGTGCACCAAGAGCCACAGTGGGCTGCAGGCTGTCTCAGTGGG +
Preference number: 1 (lower is better)
Translates to: PVWLEALSYLSSPGW*VHQEPQWAAGCLSG
Trigger: CCCACTGAGACAGCCTGCAGCCCACTGTGGCTCTTGGTGCACTCACCAGCCAGGACTAGACAAGTAGGAAAGGGCTTCTAGCCACACTGG
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000031653.12
3UTR GCA 90 bp GGCTGCCATGCTGCCACCGCCACAACACAGAACTGCCCAGCCATGTaGTTCTCAAGCCCCACTATTTTGGTCATTATTGCTGGCTTCCCC +
Preference number: 1 (lower is better)
Translates to: GCHAATATTQNCPAM*FSSPTILVIIAGFP
Trigger: GGGGAAGCCAGCAATAATGACCAAAATAGTGGGGCTTGAGAAGCACATGGCTGGGCAGTTCTGTGTTGTGGCGGTGGCAGCATGGCAGCC
57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000110529.6
3UTR CCA 90 bp CTGGTGAGTGCACCAAGAGCCACAGTGGGCTGCAGGCTGTCTCAGTaGGGATTGCACTGGGCCTCCAGTCTCATCAGACAGAAAACCTTA +
Preference number: 1 (lower is better)
Translates to: LVSAPRATVGCRLSQ*GLHWASSLIRQKTL
Trigger: TAAGGTTTTCTGTCTGATGAGACTGGAGGCCCAGTGCAATCCCCACTGAGACAGCCTGCAGCCCACTGTGGCTCTTGGTGCACTCACCAG
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000031653.12
3UTR TCA 90 bp CCTTTCCTCCATAAGAGAGACAGAGCAGGTCAGTGCATGCAGCCATaGGCTAATGGGCTTACTGCCTCTAGTCCCACAGCTGCAGGGAGG +
Preference number: 1 (lower is better)
Translates to: PFLHKRDRAGQCMQP*ANGLTASSPTAAGR
Trigger: CCTCCCTGCAGCTGTGGGACTAGAGGCAGTAAGCCCATTAGCTCATGGCTGCATGCACTGACCTGCTCTGTCTCTCTTATGGAGGAAAGG
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000031653.12
3UTR GCA 90 bp ATGCACAAAACATACAGATACACACACACAAACACGTACAGTTCCTaGCACCGTGGGTCAAGGGTGCCCTGCCCTCTCCCTGCACTGAGT +
Preference number: 1 (lower is better)
Translates to: MHKTYRYTHTNTYSS*HRGSRVPCPLPALS
Trigger: ACTCAGTGCAGGGAGAGGGCAGGGCACCCTTGACCCACGGTGGCAGGAACTGTACGTGTTTGTGTGTGTGTATCTGTATGTTTTGTGCAT
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000031653.12
3UTR CCA 90 bp AGGCTAATGCAGACTTGCCTGACCTTCAGCTCCCTAGTCACACACTaGCGATCTCACACACTGGGAGAAATGTCTGTTCTTCCTCAGTGC +
Preference number: 1 (lower is better)
Translates to: RLMQTCLTFSSLVTH*RSHTLGEMSVLPQC
Trigger: GCACTGAGGAAGAACAGACATTTCTCCCAGTGTGTGAGATCGCCAGTGTGTGACTAGGGAGCTGAAGGTCAGGCAAGTCTGCATTAGCCT
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000031653.12
3UTR CCA 90 bp CTGAGGCCCCTGAAAGTTCCTACCGGTGCTGAGGTATTGTTTCCCTaGAGGAAGACATTGCCTCAGAATGAACAAAGAGGCCAAAGAGCC +
Preference number: 1 (lower is better)
Translates to: LRPLKVPTGAEVLFP*RKTLPQNEQRGQRA
Trigger: GGCTCTTTGGCCTCTTTGTTCATTCTGAGGCAATGTCTTCCTCCAGGGAAACAATACCTCAGCACCGGTAGGAACTTTCAGGGGCCTCAG
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000110529.6
3UTR CCA 90 bp TCACACACTGGGAGAAATGTCTGTTCTTCCTCAGTGCCATCTACTTaGGCCTTGAATGGCAAACGGTTTGAATGCCACTGTCCAGGCTCT +
Preference number: 1 (lower is better)
Translates to: SHTGRNVCSSSVPST*ALNGKRFECHCPGS
Trigger: AGAGCCTGGACAGTGGCATTCAAACCGTTTGCCATTCAAGGCCCAAGTAGATGGCACTGAGGAAGAACAGACATTTCTCCCAGTGTGTGA
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000031653.12
3UTR TCA 90 bp GAACTGATGATGGCTCTGGCCTCAGAAGCCAAGCGCCACCCCCACTaGCACATGTTAAATATGCTTTGGATGGTAAACAGACAACAGAAG +
Preference number: 1 (lower is better)
Translates to: ELMMALASEAKRHPH*HMLNMLWMVNRQQK
Trigger: CTTCTGTTGTCTGTTTACCATCCAAAGCATATTTAACATGTGTCAGTGGGGGTGGCGCTTGGCTTCTGAGGCCAGAGCCATCATCAGTTC
49% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000031653.12
3UTR TCA 90 bp CTGGACCTTCATAATTCACATTGGGACATAGCTTTACTCTCGGAATaGCATCAACATCTTGAGCCCCTGGGACCCATCTTAGAACCCTCC +
Preference number: 1 (lower is better)
Translates to: LDLHNSHWDIALLSE*HQHLEPLGPILEPS
Trigger: GGAGGGTTCTAAGATGGGTCCCAGGGGCTCAAGATGTTGATGTCATTCCGAGAGTAAAGCTATGTCCCAATGTGAATTATGAAGGTCCAG
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000110529.6
3UTR TCA 90 bp GTGAGTACAGTGTCTCAGTTTAATGGAGTAGTTATTCAGTCCTGCTaGCGTGTATACATTCTAGTGAGGTGGCCTCAAGCCCAAGGGAGA +
Preference number: 1 (lower is better)
Translates to: VSTVSQFNGVVIQSC*RVYILVRWPQAQGR
Trigger: TCTCCCTTGGGCTTGAGGCCACCTCACTAGAATGTATACACGTCAGCAGGACTGAATAACTACTCCATTAAACTGAGACACTGTACTCAC
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000110529.6
3UTR CCA 90 bp GGGAAAAGATTTAAGATTAACTGTGGTTCCCGAGAACATGTGCCCTaGTCTAGGAAACGTCCCTCATGTTCTGCTCTGATACCTCTTGGA +
Preference number: 1 (lower is better)
Translates to: GKRFKINCGSREHVP*SRKRPSCSALIPLG
Trigger: TCCAAGAGGTATCAGAGCAGAACATGAGGGACGTTTCCTAGACCAGGGCACATGTTCTCGGGAACCACAGTTAATCTTAAATCTTTTCCC
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000031653.12
3UTR TCA 90 bp TCACCTGCTGTGCCAAGGAGCATAAAGTGCTTAATAAATATGGGCTaGTACTCTTTAGCTCCTCTCAGACTGCCTTGGGATGGTGAAATC +
Preference number: 1 (lower is better)
Translates to: SPAVPRSIKCLINMG*YSLAPLRLPWDGEI
Trigger: GATTTCACCATCCCAAGGCAGTCTGAGAGGAGCTAAAGAGTATCAGCCCATATTTATTAAGCACTTTATGCTCCTTGGCACAGCAGGTGA
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000031653.12
3UTR TCA 90 bp TCTTGGTATCCCTTACATATTCTGCACCCTTGTCTGAGCTTTCTCTaGACAGATTTGGTTCCTCATCTTAGGACATTAACAAGGGGAGAG +
Preference number: 1 (lower is better)
Translates to: SWYPLHILHPCLSFL*TDLVPHLRTLTRGE
Trigger: CTCTCCCCTTGTTAATGTCCTAAGATGAGGAACCAAATCTGTTCAGAGAAAGCTCAGACAAGGGTGCAGAATATGTAAGGGATACCAAGA
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000110529.6
3UTR GCA 90 bp ATATATATATATCAAAAGAGGTTGGCATCAGAGTGGAAGAAAAGATaGGTCCCAGGTTGCTGCTATGAAGCAGAAGACAGAAGAGCAGAC +
Preference number: 1 (lower is better)
Translates to: IYIYQKRLASEWKKR*VPGCCYEAEDRRAD
Trigger: GTCTGCTCTTCTGTCTTCTGCTTCATAGCAGCAACCTGGGACGCATCTTTTCTTCCACTCTGATGCCAACCTCTTTTGATATATATATAT
42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000110529.6
3UTR TCA 90 bp TTCCTGCAGGAAAACTCTCAGGATCAGCATTTGTTAAGGCCATTTTaGCATCCCAAGTTAAGAAGAATTATCATCACTCAGCAGGGTTAC +
Preference number: 1 (lower is better)
Translates to: FLQENSQDQHLLRPF*HPKLRRIIITQQGY
Trigger: GTAACCCTGCTGAGTGATGATAATTCTTCTTAACTTGGGATGTCAAAATGGCCTTAACAAATGCTGATCCTGAGAGTTTTCCTGCAGGAA
41% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000110529.6
3UTR CCA 90 bp AGGACTGATTATACAACAATGAATGGAATTCTTAAAATTGTCTCTTaGGATGCACACCTTCCCCTACTCACAGGGAAGGAATGGACTTTG +
Preference number: 1 (lower is better)
Translates to: RTDYTTMNGILKIVS*DAHLPLLTGKEWTL
Trigger: CAAAGTCCATTCCTTCCCTGTGAGTAGGGGAAGGTGTGCATCCCAAGAGACAATTTTAAGAATTCCATTCATTGTTGTATAATCAGTCCT
41% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000110529.6
3UTR TCA 90 bp TTTCTTTCTTTCTTGAATATTCTGGAAGGACTGATTATACAACAATaGATGGAATTCTTAAAATTGTCTCTTGGGATGCACACCTTCCCC +
Preference number: 1 (lower is better)
Translates to: FLSFLNILEGLIIQQ*MEFLKLSLGMHTFP
Trigger: GGGGAAGGTGTGCATCCCAAGAGACAATTTTAAGAATTCCATTCATTGTTGTATAATCAGTCCTTCCAGAATATTCAAGAAAGAAAGAAA
36% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000110529.6
3UTR-3UTR GCA 90 bp AGTGGCATAGCGGAGCCCCCTCCTGCACGGGCTCCACAGGACGGACGCATCCCAGTCGCCAGAGGCACCTaGTCCTTCCTGTCCAGGTTA +
Preference number: 2 (lower is better)
Translates to: SGIAEPPPARAPQDGRIPVARGT*SFLSRL
Trigger: TAACCTGGACAGGAAGGAGCAGGTGCCTCTGGCGAC...TGGGATGCGTCCGTCCTGTGGAGCCCGTGCAGGAGGGGGCTCCGCTATGCCACT
64% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000031653.12
3UTR-3UTR TCA 90 bp TTCCTGCCACCGTGGGTCAAGGGTGCCCTGCCCTCTCCCTGCACTGAGTCCCGTAGCGGAGGCCAGGAGTaGGAAGTCACTGAAGTGGCA +
Preference number: 2 (lower is better)
Translates to: FLPPWVKGALPSPCTESRSGGQE*EVTEVA
Trigger: TGCCACTTCAGTGACTTCTCACTCCTGGCCTCCGCT...ACGGGACTCAGTGCAGGGAGAGGGCAGGGCACCCTTGACCCACGGTGGCAGGAA
63% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000031653.12
3UTR-3UTR GCA 90 bp TTCCTGCCACCGTGGGTCAAGGGTGCCCTGCCCTCTCCCTGCACTGAGTCCCGTTGCGAAGGTCAGGCCTaGAAGCTTGGGTATGACCTC +
Preference number: 2 (lower is better)
Translates to: FLPPWVKGALPSPCTESRCEGQA*KLGYDL
Trigger: GAGGTCATACCCAAGCTTGCAGGCCTGACCTTCGCA...ACGGGACTCAGTGCAGGGAGAGGGCAGGGCACCCTTGACCCACGGTGGCAGGAA
62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000031653.12
3UTR-3UTR CCA 90 bp TTCCTGCCACCGTGGGTCAAGGGTGCCCTGCCCTCTCCCTGCACTGAGTCCCGTCGAGAACATGTGCCCTaGTCTAGGAAACGTCCCTCA +
Preference number: 2 (lower is better)
Translates to: FLPPWVKGALPSPCTESRREHVP*SRKRPS
Trigger: TGAGGGACGTTTCCTAGACCAGGGCACATGTTCTCG...ACGGGACTCAGTGCAGGGAGAGGGCAGGGCACCCTTGACCCACGGTGGCAGGAA
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000031653.12
3UTR-3UTR CCA 90 bp GTGCACCAAGAGCCACAGTGGGCTGCAGGCTGTCTCAGTGGGGATTGCACTGGGACCACTCTGCCTCTCTaGGTCTTGGTCCAACCAGCC +
Preference number: 2 (lower is better)
Translates to: VHQEPQWAAGCLSGDCTGTTLPL*VLVQPA
Trigger: GGCTGGTTGGACCAAGACCCAGAGAGGCAGAGTGGT...CCCAGTGCAATCCCCACTGAGACAGCCTGCAGCCCACTGTGGCTCTTGGTGCAC
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000031653.12
3UTR-3UTR GCA 90 bp CCTACAAGTGATGCTGTGGCCCGGATTCCATGTCCCCTGCAGGAGTCTGCGGCGTGCTGCACTTTTGCCTaGAGTCAGGGGCTGTCAGTC +
Preference number: 2 (lower is better)
Translates to: PTSDAVARIPCPLQESAACCTFA*SQGLSV
Trigger: GACTGACAGCCCCTGACTGCAGGCAAAAGTGCAGCA...CGCCGCAGACTCCTGCAGGGGACATGGAATCCGGGCCACAGCATCACTTGTAGG
60% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 1 transcripts:
ENSMUST00000110529.6
3UTR-3UTR GCA 90 bp TTCCTGCCACCGTGGGTCAAGGGTGCCCTGCCCTCTCCCTGCACTGAGTCCCGTGCCGACAAGAGCTTTTaGGAATGGACAAAGATGTCT +
Preference number: 2 (lower is better)
Translates to: FLPPWVKGALPSPCTESRADKSF*EWTKMS
Trigger: AGACATCTTTGTCCATTCGCAAAAGCTCTTGTCGGC...ACGGGACTCAGTGCAGGGAGAGGGCAGGGCACCCTTGACCCACGGTGGCAGGAA
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000031653.12
3UTR-3UTR GCA 90 bp CTGCCCTCTCCCTGCACTGAGTCCCGTGCAACAGGCTTTGAACAGCACTGCCCCATTAAGTGGCTAGCATaGTCTGCTCTCCCAAAGCAG +
Preference number: 2 (lower is better)
Translates to: LPSPCTESRATGFEQHCPIKWLA*SALPKQ
Trigger: CTGCTTTGGGAGAGCAGAGCATGCTAGCCACTTAAT...GGGGCAGTGCTGTTCAAAGCCTGTTGCACGGGACTCAGTGCAGGGAGAGGGCAG
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000031653.12
3UTR-3UTR CCA 90 bp GTTCCCAGGCTCGAGGGCTGCCATGCTGCCACCGCCACAACACAGAACTGCCCAGTGGAGCAGACCTGCTaGACCTTCATAATTCACATT +
Preference number: 2 (lower is better)
Translates to: VPRLEGCHAATATTQNCPVEQTC*TFIIHI
Trigger: AATGTGAATTATGAAGGTCCAGCAGGTCTGCTCCAC...TGGGCAGTTCTGTGTTGTGGCGGTGGCAGCATGGCAGCCCTCGAGCCTGGGAAC
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000110529.6
3UTR-3UTR GCA 90 bp CCTACAAGTGATGCTGTGGCCCGGATTCCATGTCCCCTGCAGGAGTCTGCGGCGTATTTTGGTCATTATTaGTGGCTTCCCCCAGCCATG +
Preference number: 2 (lower is better)
Translates to: PTSDAVARIPCPLQESAAYFGHY*WLPPAM
Trigger: CATGGCTGGGGGAAGCCAGCAATAATGACCAAAATA...CGCCGCAGACTCCTGCAGGGGACATGGAATCCGGGCCACAGCATCACTTGTAGG
56% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 1 transcripts:
ENSMUST00000110529.6
3UTR-3UTR TCA 90 bp CCTACAAGTGATGCTGTGGCCCGGATTCCATGTCCCCTGCAGGAGTCTGCGGCGTATTTTTGCTGGTCATaGGTAGCTAAAGACAGCCAC +
Preference number: 2 (lower is better)
Translates to: PTSDAVARIPCPLQESAAYFCWS*VAKDSH
Trigger: GTGGCTGTCTTTAGCTACTCATGACCAGCAAAAATA...CGCCGCAGACTCCTGCAGGGGACATGGAATCCGGGCCACAGCATCACTTGTAGG
54% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000110529.6
3UTR-3UTR GCA 90 bp ATGGAATTCTTAAAATTGTCTCTTGGGATGCACACCTTCCCCTACTCACAGGGACCCAGGCTCGAGGGCTaGCATGCTGCCACCGCCACA +
Preference number: 2 (lower is better)
Translates to: MEFLKLSLGMHTFPYSQGPRLEG*HAATAT
Trigger: TGTGGCGGTGGCAGCATGGCAGCCCTCGAGCCTGGG...TCCCTGTGAGTAGGGGAAGGTGTGCATCCCAAGAGACAATTTTAAGAATTCCAT
54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000110529.6
3UTR-3UTR GCA 90 bp TCACACACTGGGAGAAATGTCTGTTCTTCCTCAGTGCCATCTACTTGGGCCTTGCTGGGACAACCACTCTaGCTCTCTGGGTCTTGGTCC +
Preference number: 2 (lower is better)
Translates to: SHTGRNVCSSSVPSTWALLGQPL*LSGSWS
Trigger: GGACCAAGACCCAGAGAGGCAGAGTGGTTGTCCCAG...CAAGGCCCAAGTAGATGGCACTGAGGAAGAACAGACATTTCTCCCAGTGTGTGA
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000031653.12
3UTR-3UTR CCA 90 bp CTGCCCTCTCCCTGCACTGAGTCCCGTGCAACAGGCTTTGAACAGCACTGCCCCTCACACGTCACTAACTaGGGTTACATTCTTGTTAGT +
Preference number: 2 (lower is better)
Translates to: LPSPCTESRATGFEQHCPSHVTN*GYILVS
Trigger: ACTAACAAGAATGTAACCCCAGTTAGTGACGTGTGA...GGGGCAGTGCTGTTCAAAGCCTGTTGCACGGGACTCAGTGCAGGGAGAGGGCAG
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000031653.12
3UTR-3UTR CCA 90 bp AGTCTTTCCTCTGGGCTGACAACTTCCAGGCTGCTGATTGTTCTCACAGCATTTGTGGACAGAGGAGGGTaGAGCAGACCTGCTGGACCT +
Preference number: 2 (lower is better)
Translates to: SLSSGLTTSRLLIVLTAFVDRGG*SRPAGP
Trigger: AGGTCCAGCAGGTCTGCTCCACCCTCCTCTGTCCAC...AAATGCTGTGAGAACAATCAGCAGCCTGGAAGTTGTCAGCCCAGAGGAAAGACT
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000110529.6
3UTR-3UTR GCA 90 bp TATGACCCCAGGGTTGCTGGCCTGGTTTCCAGGTCTCTAATGATGTGGGATGTGTGCGTCCCAGGTTGCTaGTATGAAGCAGAAGACAGA +
Preference number: 2 (lower is better)
Translates to: YDPRVAGLVSRSLMMWDVCVPGC*YEAEDR
Trigger: TCTGTCTTCTGCTTCATAGCAGCAACCTGGGACGCA...CACATCCCACATCATTAGAGACCTGGAAACCAGGCCAGCAACCCTGGGGTCATA
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000110529.6
3UTR-3UTR CCA 90 bp CCTAGTCACACACTGGCGATCTCACACACTGGGAGAAATGTCTGTTCTTCCTCAAATACTGTCAGGGGCTaGTTGTCGGGGCTGGTGAGA +
Preference number: 2 (lower is better)
Translates to: PSHTLAISHTGRNVCSSSNTVRG*LSGLVR
Trigger: TCTCACCAGCCCCGACAACCAGCCCCTGACAGTATT...TGAGGAAGAACAGACATTTCTCCCAGTGTGTGAGATCGCCAGTGTGTGACTAGG
52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000031653.12
3UTR CAA 90 bp TCTTGGGATGCACACCTTCCCCTACTCACAGGGAAGGAATGGACTTaGCATGCTCAGTTCAGTTCAGGTTTTGTTCTGAGGAGGCTCCCT +
Preference number: 2 (lower is better)
Translates to: SWDAHLPLLTGKEWT*HAQFSSGFVLRRLP
Trigger: AGGGAGCCTCCTCAGAACAAAACCTGAACTGAACTGAGCATGCAAAGTCCATTCCTTCCCTGTGAGTAGGGGAAGGTGTGCATCCCAAGA
51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000110529.6
3UTR-3UTR TCA 90 bp GTTTCCATTTTTCTTCCTACCCTAAAAACTCAGAAGGAACCGTCTTCCTTCTTTTCGTCTGCCCAGCTGTaGCCGGCTCCGGCAGGTGTG +
Preference number: 2 (lower is better)
Translates to: VSIFLPTLKTQKEPSSFFSSAQL*PAPAGV
Trigger: CACACCTGCCGGAGCCGGTCACAGCTGGGCAGACGA...AAAGAAGGAAGACGGTTCCTTCTGAGTTTTTAGGGTAGGAAGAAAAATGGAAAC
51% GC, longest homopolymer 5 nt, total homopolymer stretches 14 nt.
Matches the following 1 transcripts:
ENSMUST00000031653.12
3UTR-3UTR CCA 90 bp TATGACCCCAGGGTTGCTGGCCTGGTTTCCAGGTCTCTAATGATGTGGGATGTGAGGTTGGCATCAGAGTaGAAGAAAAGATGCGTCCCA +
Preference number: 2 (lower is better)
Translates to: YDPRVAGLVSRSLMMWDVRLASE*KKRCVP
Trigger: TGGGACGCATCTTTTCTTCCACTCTGATGCCAACCT...CACATCCCACATCATTAGAGACCTGGAAACCAGGCCAGCAACCCTGGGGTCATA
51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000110529.6
3UTR CAA 90 bp AGTTTAGTAACTATAGCTGGGACAACCACTCTGCCTCTCTGGGTCTaGGTCCAACCAGCCCGATTTGGGTACAGAGAAACCCCTTTTCTA +
Preference number: 2 (lower is better)
Translates to: SLVTIAGTTTLPLWV*VQPARFGYRETPFL
Trigger: TAGAAAAGGGGTTTCTCTGTACCCAAATCGGGCTGGTTGGACCAAGACCCAGAGAGGCAGAGTGGTTGTCCCAGCTATAGTTACTAAACT
49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000031653.12
3UTR-3UTR GCA 90 bp CATCTAATCACAGCAGGAAACACACGTGTAATTACCTGGGTGGACAGAGGAGGGGAGTGGAAGAAAAGATaGGTCCCAGGTTGCTGCTAT +
Preference number: 2 (lower is better)
Translates to: HLITAGNTRVITWVDRGGEWKKR*VPGCCY
Trigger: ATAGCAGCAACCTGGGACGCATCTTTTCTTCCACTC...CCCTCCTCTGTCCACCCAGGTAATTACACGTGTGTTTCCTGCTGTGATTAGATG
49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000110529.6
3UTR-3UTR GCA 90 bp TCTCGTCTTTCGGCTCCTGCCTACAAGAGTGCTCAACCTAAGAATCATACTTTGGCCACAACACAGAACTaGCCAGCCATGTGCTTCTCA +
Preference number: 2 (lower is better)
Translates to: SRLSAPAYKSAQPKNHTLATTQN*PAMCFS
Trigger: TGAGAAGCACATGGCTGGGCAGTTCTGTGTTGTGGC...CAAAGTATGATTCTTAGGTTGAGCACTCTTGTAGGCAGGAGCCGAAAGACGAGA
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000110529.6
3UTR-3UTR CCA 90 bp CATCTAATCACAGCAGGAAACACACGTGTAATTACCTGGGTGGACAGAGGAGGGTGTCCAAACTCATTTTaGGAGGAGCGTTTCCTCTGG +
Preference number: 2 (lower is better)
Translates to: HLITAGNTRVITWVDRGGCPNSF*EERFLW
Trigger: CCAGAGGAAACGCTCCTCCCAAAATGAGTTTGGACA...CCCTCCTCTGTCCACCCAGGTAATTACACGTGTGTTTCCTGCTGTGATTAGATG
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000110529.6
3UTR-3UTR TCA 90 bp ATGGAATTCTTAAAATTGTCTCTTGGGATGCACACCTTCCCCTACTCACAGGGACCCAGGTTGCTGCTATaGAGCAGAAGACAGAAGAGC +
Preference number: 2 (lower is better)
Translates to: MEFLKLSLGMHTFPYSQGPRLLL*SRRQKS
Trigger: GCTCTTCTGTCTTCTGCTTCATAGCAGCAACCTGGG...TCCCTGTGAGTAGGGGAAGGTGTGCATCCCAAGAGACAATTTTAAGAATTCCAT
48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000110529.6
3UTR-3UTR CCA 90 bp GGGAGCTTGCATAAATTACACATCACCTGCTGTGCCAAGGAGCATAAAGTGCTTCCAACCAGCCCGATTTaGGTACAGAGAAACCCCTTT +
Preference number: 2 (lower is better)
Translates to: GSLHKLHITCCAKEHKVLPTSPI*VQRNPF
Trigger: AAAGGGGTTTCTCTGTACCCAAATCGGGCTGGTTGG...AAGCACTTTATGCTCCTTGGCACAGCAGGTGATGTGTAATTTATGCAAGCTCCC
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000031653.12
3UTR-3UTR CCA 90 bp GTTTCCATTTTTCTTCCTACCCTAAAAACTCAGAAGGAACCGTCTTCCTTCTTTTGCAGGCTGTCTCAGTaGGGATTGCACTGGGCCTCC +
Preference number: 2 (lower is better)
Translates to: VSIFLPTLKTQKEPSSFFCRLSQ*GLHWAS
Trigger: GGAGGCCCAGTGCAATCCCCACTGAGACAGCCTGCA...AAAGAAGGAAGACGGTTCCTTCTGAGTTTTTAGGGTAGGAAGAAAAATGGAAAC
48% GC, longest homopolymer 5 nt, total homopolymer stretches 14 nt.
Matches the following 1 transcripts:
ENSMUST00000031653.12
3UTR-3UTR CCA 90 bp CCTAGTCACACACTGGCGATCTCACACACTGGGAGAAATGTCTGTTCTTCCTCAGGACAAAGATGTCTTTaGCCAGCCCTACCTGATTTT +
Preference number: 2 (lower is better)
Translates to: PSHTLAISHTGRNVCSSSGQRCL*PALPDF
Trigger: AAAATCAGGTAGGGCTGGCCAAAGACATCTTTGTCC...TGAGGAAGAACAGACATTTCTCCCAGTGTGTGAGATCGCCAGTGTGTGACTAGG
48% GC, longest homopolymer 4 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000031653.12
3UTR CAA 90 bp GAGGGCACTGGGCTTTCTTATTACGTTATCATGTCCAAACTCATTTaGGGAGGAGCGTTTCCTCTGGGCCTGAAAGTTAGCAACAGTAAC +
Preference number: 2 (lower is better)
Translates to: EGTGLSYYVIMSKLI*GGAFPLGLKVSNSN
Trigger: GTTACTGTTGCTAACTTTCAGGCCCAGAGGAAACGCTCCTCCCAAAATGAGTTTGGACATGATAACGTAATAAGAAAGCCCAGTGCCCTC
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000110529.6
3UTR-3UTR TCA 90 bp TCTCGTCTTTCGGCTCCTGCCTACAAGAGTGCTCAACCTAAGAATCATACTTTGGACATTGCCTCAGAATaGACAAAGAGGCCAAAGAGC +
Preference number: 2 (lower is better)
Translates to: SRLSAPAYKSAQPKNHTLDIASE*TKRPKS
Trigger: GCTCTTTGGCCTCTTTGTTCATTCTGAGGCAATGTC...CAAAGTATGATTCTTAGGTTGAGCACTCTTGTAGGCAGGAGCCGAAAGACGAGA
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000110529.6
3UTR-3UTR CCA 90 bp GCCATCGTCATTAGACCCCAGACAAGGTATGAAACAGATGAAAATAAGATGGTTAGCAGCTGGCTCCTGTaGAGCGGAATAGGTGTAAAC +
Preference number: 2 (lower is better)
Translates to: AIVIRPQTRYETDENKMVSSWLL*SGIGVN
Trigger: GTTTACACCTATTCCGCTCCACAGGAGCCAGCTGCT...AACCATCTTATTTTCATCTGTTTCATACCTTGTCTGGGGTCTAATGACGATGGC
46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000031653.12
3UTR-3UTR CCA 90 bp GTTTCCATTTTTCTTCCTACCCTAAAAACTCAGAAGGAACCGTCTTCCTTCTTTTGCCTCTCTGGGTCTTaGTCCAACCAGCCCGATTTG +
Preference number: 2 (lower is better)
Translates to: VSIFLPTLKTQKEPSSFFCLSGS*SNQPDL
Trigger: CAAATCGGGCTGGTTGGACCAAGACCCAGAGAGGCA...AAAGAAGGAAGACGGTTCCTTCTGAGTTTTTAGGGTAGGAAGAAAAATGGAAAC
46% GC, longest homopolymer 5 nt, total homopolymer stretches 14 nt.
Matches the following 1 transcripts:
ENSMUST00000031653.12
3UTR-3UTR TCA 90 bp TCACACACTGGGAGAAATGTCTGTTCTTCCTCAGTGCCATCTACTTGGGCCTTGTTAATAAATATGGGCTaGTACTCTTTAGCTCCTCTC +
Preference number: 2 (lower is better)
Translates to: SHTGRNVCSSSVPSTWALLINMG*YSLAPL
Trigger: GAGAGGAGCTAAAGAGTATCAGCCCATATTTATTAA...CAAGGCCCAAGTAGATGGCACTGAGGAAGAACAGACATTTCTCCCAGTGTGTGA
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000031653.12
3UTR-3UTR GCA 90 bp AGTCTTTCCTCTGGGCTGACAACTTCCAGGCTGCTGATTGTTCTCACAGCATTTTTTATAATGAAGGCTTaGTGCACTTTTGCCTGCAGT +
Preference number: 2 (lower is better)
Translates to: SLSSGLTTSRLLIVLTAFFIMKA*CTFACS
Trigger: ACTGCAGGCAAAAGTGCAGCAAGCCTTCATTATAAA...AAATGCTGTGAGAACAATCAGCAGCCTGGAAGTTGTCAGCCCAGAGGAAAGACT
44% GC, longest homopolymer 6 nt, total homopolymer stretches 10 nt.
Matches the following 1 transcripts:
ENSMUST00000110529.6
3UTR-3UTR TCA 90 bp CAGAAGAGCAGACACACAAAAGAAACAGAGTACAGGGATCTTCAAATCCAAACACGTTTCCTCTGGGCCTaGAAGTTAGCAACAGTAACA +
Preference number: 2 (lower is better)
Translates to: QKSRHTKETEYRDLQIQTRFLWA*KLATVT
Trigger: TGTTACTGTTGCTAACTTTCAGGCCCAGAGGAAACG...TGTTTGGATTTGAAGATCCCTGTACTCTGTTTCTTTTGTGTGTCTGCTCTTCTG
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000110529.6
3UTR-3UTR TCA 90 bp TTTTGGTCATTATTGCTGGCTTCCCCCAGCCATGTAGTTCACATACAAAGATCAGGTTGTGGACATCTTTaGATGCCATCAAAGCTTGGT +
Preference number: 2 (lower is better)
Translates to: FWSLLLASPSHVVHIQRSGCGHL*MPSKLG
Trigger: ACCAAGCTTTGATGGCATTCAAAGATGTCCACAACC...TGATCTTTGTATGTGAACTACATGGCTGGGGGAAGCCAGCAATAATGACCAAAA
43% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000110529.6
3UTR-3UTR CCA 90 bp AGTCTTTCCTCTGGGCTGACAACTTCCAGGCTGCTGATTGTTCTCACAGCATTTTATATCCTGGATACATaGGTTGTGGACATCTTTGAA +
Preference number: 2 (lower is better)
Translates to: SLSSGLTTSRLLIVLTAFYILDT*VVDIFE
Trigger: TTCAAAGATGTCCACAACCCATGTATCCAGGATATA...AAATGCTGTGAGAACAATCAGCAGCCTGGAAGTTGTCAGCCCAGAGGAAAGACT
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000110529.6
3UTR-3UTR GCA 90 bp ATGGTTAGCTTTAACCCAAATCTTGCAAAGAACACCCAAAAGGGGCTAGTTGTACCTGGAGGAAGACATTaGCTCAGAATGAACAAAGAG +
Preference number: 2 (lower is better)
Translates to: MVSFNPNLAKNTQKGLVVPGGRH*LRMNKE
Trigger: CTCTTTGTTCATTCTGAGGCAATGTCTTCCTCCAGG...TACAACTAGCCCCTTTTGGGTGTTCTTTGCAAGATTTGGGTTAAAGCTAACCAT
42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000110529.6
3UTR-3UTR GCA 90 bp ATGCAATACATTATAATATTAAAAATACCACACAGGAACGGCAGTACCCTCCAGGGAGAAAAACAGAATTaGCTAAGGCCTCTCCCCTGC +
Preference number: 2 (lower is better)
Translates to: MQYIIILKIPHRNGSTLQGEKQN*LRPLPC
Trigger: GCAGGGGAGAGGCCTTAGGCAATTCTGTTTTTCTCC...CTGGAGGGTACTGCCGTTCCTGTGTGGTATTTTTAATATTATAATGTATTGCAT
42% GC, longest homopolymer 5 nt, total homopolymer stretches 14 nt.
Matches the following 1 transcripts:
ENSMUST00000110529.6
3UTR-3UTR CCA 90 bp TTTTGGTCATTATTGCTGGCTTCCCCCAGCCATGTAGTTCACATACAAAGATCAATTCATGTCCGTCTTTaGCAGAAACCAGCATTTGCT +
Preference number: 2 (lower is better)
Translates to: FWSLLLASPSHVVHIQRSIHVRL*QKPAFA
Trigger: AGCAAATGCTGGTTTCTGCCAAAGACGGACATGAAT...TGATCTTTGTATGTGAACTACATGGCTGGGGGAAGCCAGCAATAATGACCAAAA
42% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000110529.6
3UTR-3UTR CCA 90 bp ATGGTTAGCTTTAACCCAAATCTTGCAAAGAACACCCAAAAGGGGCTAGTTGTACGTAAAACGGGCACTTaGGGGGAAATGCTATTGTTT +
Preference number: 2 (lower is better)
Translates to: MVSFNPNLAKNTQKGLVVRKTGT*GEMLLF
Trigger: AAACAATAGCATTTCCCCCCAAGTGCCCGTTTTACG...TACAACTAGCCCCTTTTGGGTGTTCTTTGCAAGATTTGGGTTAAAGCTAACCAT
42% GC, longest homopolymer 5 nt, total homopolymer stretches 17 nt.
Matches the following 1 transcripts:
ENSMUST00000110529.6
3UTR-3UTR TCA 90 bp TTGAAATCACAGCCCGCAGAAAACTTTTCAATCTATAATGACTTGTGCATGCATCAACTTCCAGGCTGCTaGTTGTTCTCACAGCATTTG +
Preference number: 2 (lower is better)
Translates to: LKSQPAENFSIYNDLCMHQLPGC*LFSQHL
Trigger: CAAATGCTGTGAGAACAATCAGCAGCCTGGAAGTTG...ATGCATGCACAAGTCATTATAGATTGAAAAGTTTTCTGCGGGCTGTGATTTCAA
41% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000110529.6
3UTR-3UTR GCA 90 bp GTTTCCATTTTTCTTCCTACCCTAAAAACTCAGAAGGAACCGTCTTCCTTCTTTGCTGGAGAGGGAGCTTaGATAAATTACACATCACCT +
Preference number: 2 (lower is better)
Translates to: VSIFLPTLKTQKEPSSFFAGEGA*INYTSP
Trigger: AGGTGATGTGTAATTTATGCAAGCTCCCTCTCCAGC...AAAGAAGGAAGACGGTTCCTTCTGAGTTTTTAGGGTAGGAAGAAAAATGGAAAC
41% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 1 transcripts:
ENSMUST00000031653.12
3UTR CAA 90 bp ATTCCTGCAGGAAAACTCTCAGGATCAGCATTTGTTAAGGCCATTTaGACATCCCAAGTTAAGAAGAATTATCATCACTCAGCAGGGTTA +
Preference number: 2 (lower is better)
Translates to: IPAGKLSGSAFVKAI*TSQVKKNYHHSAGL
Trigger: TAACCCTGCTGAGTGATGATAATTCTTCTTAACTTGGGATGTCAAAATGGCCTTAACAAATGCTGATCCTGAGAGTTTTCCTGCAGGAAT
40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000110529.6
3UTR-3UTR TCA 90 bp TTGAAATCACAGCCCGCAGAAAACTTTTCAATCTATAATGACTTGTGCATGCATCTCATAGGCCTTAAATaGCTTTTGGATACAGGGCCT +
Preference number: 2 (lower is better)
Translates to: LKSQPAENFSIYNDLCMHLIGLK*LLDTGP
Trigger: AGGCCCTGTATCCAAAAGTCATTTAAGGCCTATGAG...ATGCATGCACAAGTCATTATAGATTGAAAAGTTTTCTGCGGGCTGTGATTTCAA
40% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 1 transcripts:
ENSMUST00000110529.6
3UTR-3UTR GCA 90 bp TTGAAATCACAGCCCGCAGAAAACTTTTCAATCTATAATGACTTGTGCATGCATATAATGAAGGCTTGCTaGACTTTTGCCTGCAGTCAG +
Preference number: 2 (lower is better)
Translates to: LKSQPAENFSIYNDLCMHIMKAC*TFACSQ
Trigger: CTGACTGCAGGCAAAAGTGCAGCAAGCCTTCATTAT...ATGCATGCACAAGTCATTATAGATTGAAAAGTTTTCTGCGGGCTGTGATTTCAA
40% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 1 transcripts:
ENSMUST00000110529.6
3UTR-3UTR CCA 90 bp TTGAAATCACAGCCCGCAGAAAACTTTTCAATCTATAATGACTTGTGCATGCATCAAGCCCCACTATTTTaGTCATTATTGCTGGCTTCC +
Preference number: 2 (lower is better)
Translates to: LKSQPAENFSIYNDLCMHQAPLF*SLLLAS
Trigger: GGAAGCCAGCAATAATGACCAAAATAGTGGGGCTTG...ATGCATGCACAAGTCATTATAGATTGAAAAGTTTTCTGCGGGCTGTGATTTCAA
40% GC, longest homopolymer 4 nt, total homopolymer stretches 16 nt.
Matches the following 1 transcripts:
ENSMUST00000110529.6
3UTR-3UTR CCA 90 bp TTGAAATCACAGCCCGCAGAAAACTTTTCAATCTATAATGACTTGTGCATGCATATAGCCTTTATATCCTaGATACATGGGTTGTGGACA +
Preference number: 2 (lower is better)
Translates to: LKSQPAENFSIYNDLCMHIAFIS*IHGLWT
Trigger: TGTCCACAACCCATGTATCCAGGATATAAAGGCTAT...ATGCATGCACAAGTCATTATAGATTGAAAAGTTTTCTGCGGGCTGTGATTTCAA
38% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000110529.6
3UTR-3UTR CAA 90 bp TTCCTGCCACCGTGGGTCAAGGGTGCCCTGCCCTCTCCCTGCACTGAGTCCCGTACTGTCAGGGGCTGGTaGTCGGGGCTGGTGAGAAGC +
Preference number: 3 (lower is better)
Translates to: FLPPWVKGALPSPCTESRTVRGW*SGLVRS
Trigger: GCTTCTCACCAGCCCCGACAACCAGCCCCTGACAGT...ACGGGACTCAGTGCAGGGAGAGGGCAGGGCACCCTTGACCCACGGTGGCAGGAA
66% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000031653.12
3UTR GCA 72 bp CTGCCACCGTGGGTCAAGGGTGCCCTGCCCTCTCCCTaGACTGAGTCCCGTGCAACAGGCTTTGAACAGCAC +
Preference number: 3 (lower is better)
Translates to: LPPWVKGALPSP*TESRATGFEQH
Trigger: GTGCTGTTCAAAGCCTGTTGCACGGGACTCAGTGCAGGGAGAGGGCAGGGCACCCTTGACCCACGGTGGCAG
64% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000031653.12
3UTR GCA 72 bp AGGCTGGTGAGTTCCCAGGCTCGAGGGCTGCCATGCTaGCACCGCCACAACACAGAACTGCCCAGCCATGTG +
Preference number: 3 (lower is better)
Translates to: RLVSSQARGLPC*HRHNTELPSHV
Trigger: CACATGGCTGGGCAGTTCTGTGTTGTGGCGGTGGCAGCATGGCAGCCCTCGAGCCTGGGAACTCACCAGCCT
64% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000110529.6
3UTR GCA 72 bp ACCAGGCTGGTGAGTTCCCAGGCTCGAGGGCTGCCATaGTGCCACCGCCACAACACAGAACTGCCCAGCCAT +
Preference number: 3 (lower is better)
Translates to: TRLVSSQARGLP*CHRHNTELPSH
Trigger: ATGGCTGGGCAGTTCTGTGTTGTGGCGGTGGCAGCATGGCAGCCCTCGAGCCTGGGAACTCACCAGCCTGGT
64% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000110529.6
3UTR-3UTR CAA 90 bp TTCCTGCCACCGTGGGTCAAGGGTGCCCTGCCCTCTCCCTGCACTGAGTCCCGTCCCATGTCTACCCTGTaGCCATCGTCATTAGACCCC +
Preference number: 3 (lower is better)
Translates to: FLPPWVKGALPSPCTESRPMSTL*PSSLDP
Trigger: GGGGTCTAATGACGATGGCAACAGGGTAGACATGGG...ACGGGACTCAGTGCAGGGAGAGGGCAGGGCACCCTTGACCCACGGTGGCAGGAA
62% GC, longest homopolymer 4 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000031653.12
3UTR CCA 72 bp GAAACAGCGGAGGCCAGGAGTGAGAAGTCACTGAAGTaGCATAGCGGAGCCCCCTCCTGCACGGGCTCCACA +
Preference number: 3 (lower is better)
Translates to: ETAEARSEKSLK*HSGAPSCTGST
Trigger: TGTGGAGCCCGTGCAGGAGGGGGCTCCGCTATGCCACTTCAGTGACTTCTCACTCCTGGCCTCCGCTGTTTC
62% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000031653.12
3UTR-3UTR CAA 90 bp GTGCACCAAGAGCCACAGTGGGCTGCAGGCTGTCTCAGTGGGGATTGCACTGGGCTGCCTCTCTGGGTCTaGGTCCAACCAGCCCGATTT +
Preference number: 3 (lower is better)
Translates to: VHQEPQWAAGCLSGDCTGLPLWV*VQPARF
Trigger: AAATCGGGCTGGTTGGACCAAGACCCAGAGAGGCAG...CCCAGTGCAATCCCCACTGAGACAGCCTGCAGCCCACTGTGGCTCTTGGTGCAC
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000031653.12
3UTR CCA 72 bp GCACCAAGAGCCACAGTGGGCTGCAGGCTGTCTCAGTaGGGATTGCACTGGGCCTCCAGTCTCATCAGACAG +
Preference number: 3 (lower is better)
Translates to: APRATVGCRLSQ*GLHWASSLIRQ
Trigger: CTGTCTGATGAGACTGGAGGCCCAGTGCAATCCCCACTGAGACAGCCTGCAGCCCACTGTGGCTCTTGGTGC
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000031653.12
3UTR TCA 72 bp TGCCCTGGTCTAGGAAACGTCCCTCATGTTCTGCTCTaGTACCTCTTGGAAGGGGGCCCGAAACAGCGGAGG +
Preference number: 3 (lower is better)
Translates to: CPGLGNVPHVLL*YLLEGGPKQRR
Trigger: CCTCCGCTGTTTCGGGCCCCCTTCCAAGAGGTATCAGAGCAGAACATGAGGGACGTTTCCTAGACCAGGGCA
58% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000031653.12
3UTR GCA 72 bp GAGCCACAGTGGGCTGCAGGCTGTCTCAGTGGGGATTaGACTGGGCCTCCAGTCTCATCAGACAGAAAACCT +
Preference number: 3 (lower is better)
Translates to: EPQWAAGCLSGD*TGPPVSSDRKP
Trigger: AGGTTTTCTGTCTGATGAGACTGGAGGCCCAGTGCAATCCCCACTGAGACAGCCTGCAGCCCACTGTGGCTC
58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000031653.12
3UTR CCA 72 bp GGCAGCTTAGGAATGGTTACCCTACAAGTGATGCTGTaGCCCGGATTCCATGTCCCCTGCAGGAGTCTGCGG +
Preference number: 3 (lower is better)
Translates to: GSLGMVTLQVML*PGFHVPCRSLR
Trigger: CCGCAGACTCCTGCAGGGGACATGGAATCCGGGCCACAGCATCACTTGTAGGGTAACCATTCCTAAGCTGCC
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000110529.6
3UTR-3UTR CAA 90 bp GTGCACCAAGAGCCACAGTGGGCTGCAGGCTGTCTCAGTGGGGATTGCACTGGGTTTAAAATGTGGCTTTaGAGCCCATCAGTAGGCAAC +
Preference number: 3 (lower is better)
Translates to: VHQEPQWAAGCLSGDCTGFKMWL*SPSVGN
Trigger: GTTGCCTACTGATGGGCTCAAAAGCCACATTTTAAA...CCCAGTGCAATCCCCACTGAGACAGCCTGCAGCCCACTGTGGCTCTTGGTGCAC
54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000031653.12
3UTR-3UTR CAA 90 bp TTCCTGCCACCGTGGGTCAAGGGTGCCCTGCCCTCTCCCTGCACTGAGTCCCGTAGCTTTTCTTTACTTTaGTGGGAAAGGGACATTTAC +
Preference number: 3 (lower is better)
Translates to: FLPPWVKGALPSPCTESRSFSLL*WERDIY
Trigger: GTAAATGTCCCTTTCCCACAAAAGTAAAGAAAAGCT...ACGGGACTCAGTGCAGGGAGAGGGCAGGGCACCCTTGACCCACGGTGGCAGGAA
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000031653.12
3UTR TCA 72 bp CCTGCAGTCAGGGGCTGTCAGTCCAGCCAAGGACAATaGGGAACAGCATCTAATCACAGCAGGAAACACACG +
Preference number: 3 (lower is better)
Translates to: PAVRGCQSSQGQ*GTASNHSRKHT
Trigger: CGTGTGTTTCCTGCTGTGATTAGATGCTGTTCCTCATTGTCCTTGGCTGGACTGACAGCCCCTGACTGCAGG
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000110529.6
3UTR TCA 72 bp CATAAGAGAGACAGAGCAGGTCAGTGCATGCAGCCATaGGCTAATGGGCTTACTGCCTCTAGTCCCACAGCT +
Preference number: 3 (lower is better)
Translates to: HKRDRAGQCMQP*ANGLTASSPTA
Trigger: AGCTGTGGGACTAGAGGCAGTAAGCCCATTAGCTCATGGCTGCATGCACTGACCTGCTCTGTCTCTCTTATG
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000031653.12
3UTR GCA 72 bp TCGCCTGACTTACACACTGCAGCCGACAAGAGCTTTTaGGAATGGACAAAGATGTCTTTGGCCAGCCCTACC +
Preference number: 3 (lower is better)
Translates to: SPDLHTAADKSF*EWTKMSLASPT
Trigger: GGTAGGGCTGGCCAAAGACATCTTTGTCCATTCGCAAAAGCTCTTGTCGGCTGCAGTGTGTAAGTCAGGCGA
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000031653.12
3UTR GCA 72 bp GCCATGAGTGTTTATAATGAAGGCTTGCTGCACTTTTaGCTGCAGTCAGGGGCTGTCAGTCCAGCCAAGGAC +
Preference number: 3 (lower is better)
Translates to: AMSVYNEGLLHF*LQSGAVSPAKD
Trigger: GTCCTTGGCTGGACTGACAGCCCCTGACTGCAGGCAAAAGTGCAGCAAGCCTTCATTATAAACACTCATGGC
53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000110529.6
3UTR GCA 72 bp GCTGCCACCGCCACAACACAGAACTGCCCAGCCATGTaGTTCTCAAGCCCCACTATTTTGGTCATTATTGCT +
Preference number: 3 (lower is better)
Translates to: AATATTQNCPAM*FSSPTILVIIA
Trigger: AGCAATAATGACCAAAATAGTGGGGCTTGAGAAGCACATGGCTGGGCAGTTCTGTGTTGTGGCGGTGGCAGC
53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000110529.6
3UTR-3UTR CAA 90 bp TCACACACTGGGAGAAATGTCTGTTCTTCCTCAGTGCCATCTACTTGGGCCTTGTCCTGTGCCTCCTGTTaGCTCTGTTCTCCCTTTCCT +
Preference number: 3 (lower is better)
Translates to: SHTGRNVCSSSVPSTWALSCASC*LCSPFP
Trigger: AGGAAAGGGAGAACAGAGCAAACAGGAGGCACAGGA...CAAGGCCCAAGTAGATGGCACTGAGGAAGAACAGACATTTCTCCCAGTGTGTGA
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000031653.12
3UTR GCA 72 bp CTTTCCTCCATAAGAGAGACAGAGCAGGTCAGTGCATaGAGCCATGAGCTAATGGGCTTACTGCCTCTAGTC +
Preference number: 3 (lower is better)
Translates to: LSSIRETEQVSA*SHELMGLLPLV
Trigger: GACTAGAGGCAGTAAGCCCATTAGCTCATGGCTGCATGCACTGACCTGCTCTGTCTCTCTTATGGAGGAAAG
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000031653.12
3UTR CCA 72 bp CAGACTTGCCTGACCTTCAGCTCCCTAGTCACACACTaGCGATCTCACACACTGGGAGAAATGTCTGTTCTT +
Preference number: 3 (lower is better)
Translates to: QTCLTFSSLVTH*RSHTLGEMSVL
Trigger: AAGAACAGACATTTCTCCCAGTGTGTGAGATCGCCAGTGTGTGACTAGGGAGCTGAAGGTCAGGCAAGTCTG
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000031653.12
3UTR-3UTR CAA 90 bp CATCTAATCACAGCAGGAAACACACGTGTAATTACCTGGGTGGACAGAGGAGGGAATGACATCAACATCTaGAGCCCCTGGGACCCATCT +
Preference number: 3 (lower is better)
Translates to: HLITAGNTRVITWVDRGGNDINI*SPWDPS
Trigger: AGATGGGTCCCAGGGGCTCAAGATGTTGATGTCATT...CCCTCCTCTGTCCACCCAGGTAATTACACGTGTGTTTCCTGCTGTGATTAGATG
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000110529.6
3UTR TCA 72 bp GGGTTGTGGACATCTTTGAATGCCATCAAAGCTTGGTaGAGGGCTTTAAAACAGTGCCCAGGGGCCATGAGT +
Preference number: 3 (lower is better)
Translates to: GLWTSLNAIKAW*RALKQCPGAMS
Trigger: ACTCATGGCCCCTGGGCACTGTTTTAAAGCCCTTCACCAAGCTTTGATGGCATTCAAAGATGTCCACAACCC
50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000110529.6
3UTR GCA 72 bp CCTTCCCCTACTCACAGGGAAGGAATGGACTTTGCATaGTCAGTTCAGTTCAGGTTTTGTTCTGAGGAGGCT +
Preference number: 3 (lower is better)
Translates to: PSPTHREGMDFA*SVQFRFCSEEA
Trigger: AGCCTCCTCAGAACAAAACCTGAACTGAACTGAGCATGCAAAGTCCATTCCTTCCCTGTGAGTAGGGGAAGG
50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000110529.6
3UTR-3UTR CAA 90 bp CATCTAATCACAGCAGGAAACACACGTGTAATTACCTGGGTGGACAGAGGAGGGATGTCCAAACTCATTTaGGGAGGAGCGTTTCCTCTG +
Preference number: 3 (lower is better)
Translates to: HLITAGNTRVITWVDRGGMSKLI*GGAFPL
Trigger: CAGAGGAAACGCTCCTCCCAAAATGAGTTTGGACAT...CCCTCCTCTGTCCACCCAGGTAATTACACGTGTGTTTCCTGCTGTGATTAGATG
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000110529.6
3UTR GCA 72 bp GCATCAGAGTGGAAGAAAAGATGCGTCCCAGGTTGCTaGTATGAAGCAGAAGACAGAAGAGCAGACACACAA +
Preference number: 3 (lower is better)
Translates to: ASEWKKRCVPGC*YEAEDRRADTQ
Trigger: TTGTGTGTCTGCTCTTCTGTCTTCTGCTTCATAGCAGCAACCTGGGACGCATCTTTTCTTCCACTCTGATGC
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000110529.6
3UTR GCA 72 bp TTGGCATCAGAGTGGAAGAAAAGATGCGTCCCAGGTTaGTGCTATGAAGCAGAAGACAGAAGAGCAGACACA +
Preference number: 3 (lower is better)
Translates to: LASEWKKRCVPG*CYEAEDRRADT
Trigger: TGTGTCTGCTCTTCTGTCTTCTGCTTCATAGCAGCAACCTGGGACGCATCTTTTCTTCCACTCTGATGCCAA
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000110529.6
3UTR CCA 72 bp GGGAGAAATGTCTGTTCTTCCTCAGTGCCATCTACTTaGGCCTTGAATGGCAAACGGTTTGAATGCCACTGT +
Preference number: 3 (lower is better)
Translates to: GRNVCSSSVPST*ALNGKRFECHC
Trigger: ACAGTGGCATTCAAACCGTTTGCCATTCAAGGCCCAAGTAGATGGCACTGAGGAAGAACAGACATTTCTCCC
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000031653.12
3UTR CCA 72 bp TGGGATGCACACCTTCCCCTACTCACAGGGAAGGAATaGACTTTGCATGCTCAGTTCAGTTCAGGTTTTGTT +
Preference number: 3 (lower is better)
Translates to: WDAHLPLLTGKE*TLHAQFSSGFV
Trigger: AACAAAACCTGAACTGAACTGAGCATGCAAAGTCCATTCCTTCCCTGTGAGTAGGGGAAGGTGTGCATCCCA
49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000110529.6
3UTR-3UTR CAA 90 bp AGTCTTTCCTCTGGGCTGACAACTTCCAGGCTGCTGATTGTTCTCACAGCATTTGGGTTGTGGACATCTTaGAATGCCATCAAAGCTTGG +
Preference number: 3 (lower is better)
Translates to: SLSSGLTTSRLLIVLTAFGLWTS*NAIKAW
Trigger: CCAAGCTTTGATGGCATTCAAAGATGTCCACAACCC...AAATGCTGTGAGAACAATCAGCAGCCTGGAAGTTGTCAGCCCAGAGGAAAGACT
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000110529.6
3UTR-3UTR CAA 90 bp AGTCTTTCCTCTGGGCTGACAACTTCCAGGCTGCTGATTGTTCTCACAGCATTTTCAAGCCCCACTATTTaGGTCATTATTGCTGGCTTC +
Preference number: 3 (lower is better)
Translates to: SLSSGLTTSRLLIVLTAFSSPTI*VIIAGF
Trigger: GAAGCCAGCAATAATGACCAAAATAGTGGGGCTTGA...AAATGCTGTGAGAACAATCAGCAGCCTGGAAGTTGTCAGCCCAGAGGAAAGACT
47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000110529.6
3UTR TCA 72 bp TGCGAATGGACAAAGATGTCTTTGGCCAGCCCTACCTaGTTTTCTTTTTCTCCAGTGTGGCTAGAAGCCCTT +
Preference number: 3 (lower is better)
Translates to: CEWTKMSLASPT*FSFSPVWLEAL
Trigger: AAGGGCTTCTAGCCACACTGGAGAAAAAGAAAATCAGGTAGGGCTGGCCAAAGACATCTTTGTCCATTCGCA
47% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000031653.12
3UTR CCA 72 bp CATTTGCAAATCCTAGGGCAGAAATCCAGAGGGTCTTaGTATCCCTTACATATTCTGCACCCTTGTCTGAGC +
Preference number: 3 (lower is better)
Translates to: HLQILGQKSRGS*YPLHILHPCLS
Trigger: GCTCAGACAAGGGTGCAGAATATGTAAGGGATACCAAGACCCTCTGGATTTCTGCCCTAGGATTTGCAAATG
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000110529.6
3UTR TCA 72 bp GTGTCTCAGTTTAATGGAGTAGTTATTCAGTCCTGCTaGCGTGTATACATTCTAGTGAGGTGGCCTCAAGCC +
Preference number: 3 (lower is better)
Translates to: VSQFNGVVIQSC*RVYILVRWPQA
Trigger: GGCTTGAGGCCACCTCACTAGAATGTATACACGTCAGCAGGACTGAATAACTACTCCATTAAACTGAGACAC
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000110529.6
3UTR GCA 72 bp AAAGATTTAAGATTAACTGTGGTTCCCGAGAACATGTaGCCTGGTCTAGGAAACGTCCCTCATGTTCTGCTC +
Preference number: 3 (lower is better)
Translates to: KDLRLTVVPENM*PGLGNVPHVLL
Trigger: GAGCAGAACATGAGGGACGTTTCCTAGACCAGGGCACATGTTCTCGGGAACCACAGTTAATCTTAAATCTTT
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000031653.12
3UTR CCA 72 bp TTTAAGATTAACTGTGGTTCCCGAGAACATGTGCCCTaGTCTAGGAAACGTCCCTCATGTTCTGCTCTGATA +
Preference number: 3 (lower is better)
Translates to: FKINCGSREHVP*SRKRPSCSALI
Trigger: TATCAGAGCAGAACATGAGGGACGTTTCCTAGACCAGGGCACATGTTCTCGGGAACCACAGTTAATCTTAAA
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000031653.12
3UTR-3UTR CAA 90 bp TCTCGTCTTTCGGCTCCTGCCTACAAGAGTGCTCAACCTAAGAATCATACTTTGGAATGCCATCAAAGCTaGGTGAAGGGCTTTAAAACA +
Preference number: 3 (lower is better)
Translates to: SRLSAPAYKSAQPKNHTLECHQS*VKGFKT
Trigger: TGTTTTAAAGCCCTTCACCAAGCTTTGATGGCATTC...CAAAGTATGATTCTTAGGTTGAGCACTCTTGTAGGCAGGAGCCGAAAGACGAGA
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000110529.6
3UTR TCA 72 bp GTGCCAAGGAGCATAAAGTGCTTAATAAATATGGGCTaGTACTCTTTAGCTCCTCTCAGACTGCCTTGGGAT +
Preference number: 3 (lower is better)
Translates to: VPRSIKCLINMG*YSLAPLRLPWD
Trigger: ATCCCAAGGCAGTCTGAGAGGAGCTAAAGAGTATCAGCCCATATTTATTAAGCACTTTATGCTCCTTGGCAC
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000031653.12
3UTR-3UTR CAA 90 bp GGGAGCTTGCATAAATTACACATCACCTGCTGTGCCAAGGAGCATAAAGTGCTTACTGGGGTTACATTCTaGTTAGTCAAAACAGCAACA +
Preference number: 3 (lower is better)
Translates to: GSLHKLHITCCAKEHKVLTGVTF*LVKTAT
Trigger: TGTTGCTGTTTTGACTAACAAGAATGTAACCCCAGT...AAGCACTTTATGCTCCTTGGCACAGCAGGTGATGTGTAATTTATGCAAGCTCCC
43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000031653.12
3UTR-3UTR CAA 90 bp ATGGTTAGCTTTAACCCAAATCTTGCAAAGAACACCCAAAAGGGGCTAGTTGTACTATTTTGGTCATTATaGCTGGCTTCCCCCAGCCAT +
Preference number: 3 (lower is better)
Translates to: MVSFNPNLAKNTQKGLVVLFWSL*LASPSH
Trigger: ATGGCTGGGGGAAGCCAGCAATAATGACCAAAATAG...TACAACTAGCCCCTTTTGGGTGTTCTTTGCAAGATTTGGGTTAAAGCTAACCAT
43% GC, longest homopolymer 5 nt, total homopolymer stretches 17 nt.
Matches the following 1 transcripts:
ENSMUST00000110529.6
3UTR TCA 72 bp GGTCTTGGTATCCCTTACATATTCTGCACCCTTGTCTaGGCTTTCTCTGAACAGATTTGGTTCCTCATCTTA +
Preference number: 3 (lower is better)
Translates to: GLGIPYIFCTLV*AFSEQIWFLIL
Trigger: TAAGATGAGGAACCAAATCTGTTCAGAGAAAGCTCAGACAAGGGTGCAGAATATGTAAGGGATACCAAGACC
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000110529.6
3UTR GCA 72 bp TATATCCTGGATACATGGGTTGTGGACATCTTTGAATaGCATCAAAGCTTGGTGAAGGGCTTTAAAACAGTG +
Preference number: 3 (lower is better)
Translates to: YILDTWVVDIFE*HQSLVKGFKTV
Trigger: CACTGTTTTAAAGCCCTTCACCAAGCTTTGATGGCATTCAAAGATGTCCACAACCCATGTATCCAGGATATA
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000110529.6
3UTR CCA 72 bp TGCATTAAATCTCCACTCACAATAGCCTTTATATCCTaGATACATGGGTTGTGGACATCTTTGAATGCCATC +
Preference number: 3 (lower is better)
Translates to: CIKSPLTIAFIS*IHGLWTSLNAI
Trigger: GATGGCATTCAAAGATGTCCACAACCCATGTATCCAGGATATAAAGGCTATTGTGAGTGGAGATTTAATGCA
40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000110529.6
3UTR-3UTR CAA 90 bp TTGAAATCACAGCCCGCAGAAAACTTTTCAATCTATAATGACTTGTGCATGCATATCCCCATAAAACATTaGCATATAGAGAAGGTGGAC +
Preference number: 3 (lower is better)
Translates to: LKSQPAENFSIYNDLCMHIPIKH*HIEKVD
Trigger: GTCCACCTTCTCTATATGCAAATGTTTTATGGGGAT...ATGCATGCACAAGTCATTATAGATTGAAAAGTTTTCTGCGGGCTGTGATTTCAA
38% GC, longest homopolymer 4 nt, total homopolymer stretches 16 nt.
Matches the following 1 transcripts:
ENSMUST00000110529.6
3UTR TCA 72 bp CAGAACAATGTATCACCACTACTCATAGGCCTTAAATaGCTTTTGGATACAGGGCCTATAAAACACGAATTA +
Preference number: 3 (lower is better)
Translates to: QNNVSPLLIGLK*LLDTGPIKHEL
Trigger: TAATTCGTGTTTTATAGGCCCTGTATCCAAAAGTCATTTAAGGCCTATGAGTAGTGGTGATACATTGTTCTG
38% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000110529.6
3UTR GCA 72 bp CAGCCCGCAGAAAACTTTTCAATCTATAATGACTTGTaGATGCATGCTCATTACAATGTTGACATCTTTACA +
Preference number: 3 (lower is better)
Translates to: QPAENFSIYNDL*MHAHYNVDIFT
Trigger: TGTAAAGATGTCAACATTGTAATGAGCATGCATGCACAAGTCATTATAGATTGAAAAGTTTTCTGCGGGCTG
38% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000110529.6
3UTR CCA 72 bp AATATATATATATATCAAAAGAGGTTGGCATCAGAGTaGAAGAAAAGATGCGTCCCAGGTTGCTGCTATGAA +
Preference number: 3 (lower is better)
Translates to: NIYIYQKRLASE*KKRCVPGCCYE
Trigger: TTCATAGCAGCAACCTGGGACGCATCTTTTCTTCCACTCTGATGCCAACCTCTTTTGATATATATATATATT
38% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000110529.6
CDS-3UTR CCA 90 bp AGTGGCATAGCGGAGCCCCCTCCTGCACGGGCTCCACAGGACGGACGCATCCCATGCACGGGCCTGATGTaGCCACAGCTGGAGAAGCAG +
Preference number: 4 (lower is better)
Translates to: SGIAEPPPARAPQDGRIPCTGLM*PQLEKQ
Trigger: CTGCTTCTCCAGCTGTGGCCACATCAGGCCCGTGCA...TGGGATGCGTCCGTCCTGTGGAGCCCGTGCAGGAGGGGGCTCCGCTATGCCACT
66% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000031653.12
CDS-3UTR TCA 90 bp AGTGGCATAGCGGAGCCCCCTCCTGCACGGGCTCCACAGGACGGACGCATCCCAGCTGCCAGGTCCCGATaGATGCACTTTCTGGAGGAC +
Preference number: 4 (lower is better)
Translates to: SGIAEPPPARAPQDGRIPAARSR*MHFLED
Trigger: GTCCTCCAGAAAGTGCATTCATCGGGACCTGGCAGC...TGGGATGCGTCCGTCCTGTGGAGCCCGTGCAGGAGGGGGCTCCGCTATGCCACT
64% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000031653.12
CDS-3UTR CCA 90 bp AGTGGCATAGCGGAGCCCCCTCCTGCACGGGCTCCACAGGACGGACGCATCCCACCCCCTTCTGGTTGGTaGCTCGGCACCTATAGACAC +
Preference number: 4 (lower is better)
Translates to: SGIAEPPPARAPQDGRIPPPSGW*LGTYRH
Trigger: GTGTCTATAGGTGCCGAGCCACCAACCAGAAGGGGG...TGGGATGCGTCCGTCCTGTGGAGCCCGTGCAGGAGGGGGCTCCGCTATGCCACT
64% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 1 transcripts:
ENSMUST00000031653.12
CDS-3UTR TCA 90 bp CGGGCTCCACAGGACGGACGCATCCCAAAGCCTTTTCCTGTGCCTCCTGTTTGCCGTCCTGCACGGGCCTaGTGTGGCCACAGCTGGAGA +
Preference number: 4 (lower is better)
Translates to: RAPQDGRIPKPFPVPPVCRPARA*CGHSWR
Trigger: TCTCCAGCTGTGGCCACATCAGGCCCGTGCAGGACG...GCAAACAGGAGGCACAGGAAAAGGCTTTGGGATGCGTCCGTCCTGTGGAGCCCG
63% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000031653.12
CDS-3UTR CCA 90 bp AGTGGCATAGCGGAGCCCCCTCCTGCACGGGCTCCACAGGACGGACGCATCCCACACGGAGTTGTAGTCTaGGGGTGGAGAACAGCAGGA +
Preference number: 4 (lower is better)
Translates to: SGIAEPPPARAPQDGRIPHGVVV*GWRTAG
Trigger: TCCTGCTGTTCTCCACCCCCAGACTACAACTCCGTG...TGGGATGCGTCCGTCCTGTGGAGCCCGTGCAGGAGGGGGCTCCGCTATGCCACT
63% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000031653.12
CDS-3UTR CCA 90 bp CTGCCCTCTCCCTGCACTGAGTCCCGTGCAACAGGCTTTGAACAGCACTGCCCCACCGTCTTCCTGCTGTaGTTTCCTGCACCGGCTGCT +
Preference number: 4 (lower is better)
Translates to: LPSPCTESRATGFEQHCPTVFLL*FPAPAA
Trigger: AGCAGCCGGTGCAGGAAACCACAGCAGGAAGACGGT...GGGGCAGTGCTGTTCAAAGCCTGTTGCACGGGACTCAGTGCAGGGAGAGGGCAG
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000031653.12
CDS-3UTR CCA 90 bp TTCCTGCCACCGTGGGTCAAGGGTGCCCTGCCCTCTCCCTGCACTGAGTCCCGTCAAACTCCCACTTGCTaGCATCATAGGGCAGCCGTT +
Preference number: 4 (lower is better)
Translates to: FLPPWVKGALPSPCTESRQTPTC*HHRAAV
Trigger: AACGGCTGCCCTATGATGCCAGCAAGTGGGAGTTTG...ACGGGACTCAGTGCAGGGAGAGGGCAGGGCACCCTTGACCCACGGTGGCAGGAA
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000031653.12
CDS-3UTR TCA 90 bp GTGCACCAAGAGCCACAGTGGGCTGCAGGCTGTCTCAGTGGGGATTGCACTGGGCTGAGCCATATCCTGTaGGAAGCAGACACCCGAGCA +
Preference number: 4 (lower is better)
Translates to: VHQEPQWAAGCLSGDCTGLSHIL*EADTRA
Trigger: TGCTCGGGTGTCTGCTTCTCACAGGATATGGCTCAG...CCCAGTGCAATCCCCACTGAGACAGCCTGCAGCCCACTGTGGCTCTTGGTGCAC
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000031653.12
CDS-3UTR GCA 90 bp CAAGAGCCACAGTGGGCTGCAGGCTGTCTCAGTGGGGATTGCACTGGGCCTCCAAGAGTCTGGCCTGCTTaGATGACATGCTGGGTGCCT +
Preference number: 4 (lower is better)
Translates to: QEPQWAAGCLSGDCTGPPRVWPA*MTCWVP
Trigger: AGGCACCCAGCATGTCATGCAAGCAGGCCAGACTCT...TGGAGGCCCAGTGCAATCCCCACTGAGACAGCCTGCAGCCCACTGTGGCTCTTG
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000031653.12
CDS-3UTR TCA 90 bp GCTGGGACAACCACTCTGCCTCTCTGGGTCTTGGTCCAACCAGCCCGATTTGGGTTGAACCAAGTGATCTaGGGCGCGGGGACACCTCTA +
Preference number: 4 (lower is better)
Translates to: AGTTTLPLWVLVQPARFGLNQVI*GAGTPL
Trigger: TAGAGGTGTCCCCGCGCCTCAGATCACTTGGTTCAA...CCCAAATCGGGCTGGTTGGACCAAGACCCAGAGAGGCAGAGTGGTTGTCCCAGC
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000031653.12
CDS-3UTR TCA 90 bp GATGGGGTACACAGGGGAGCAGGTACCCATGATGCTGGCCCGGTCAGAGAATTATGGTCTCAGTCCAGGTaGACCGCTTCAGCAAGGGGG +
Preference number: 4 (lower is better)
Translates to: DGVHRGAGTHDAGPVRELWSQSR*TASARG
Trigger: CCCCCTTGCTGAAGCGGTTCACCTGGACTGAGACCA...TAATTCTCTGACCGGGCCAGCATCATGGGTACCTGCTCCCCTGTGTACCCCATC
59% GC, longest homopolymer 5 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000031653.12
CDS-3UTR GCA 90 bp GTTCCCAGGCTCGAGGGCTGCCATGCTGCCACCGCCACAACACAGAACTGCCCAAAGGTGCTGCAGAATTaGCTGTTATCCCTCCCACAG +
Preference number: 4 (lower is better)
Translates to: VPRLEGCHAATATTQNCPKVLQN*LLSLPQ
Trigger: CTGTGGGAGGGATAACAGGCAATTCTGCAGCACCTT...TGGGCAGTTCTGTGTTGTGGCGGTGGCAGCATGGCAGCCCTCGAGCCTGGGAAC
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000110529.6
CDS-3UTR GCA 90 bp CGGGCTCCACAGGACGGACGCATCCCAAAGCCTTTTCCTGTGCCTCCTGTTTGCGGCAGCCGTTCACACTaGTCATCCAGGGGAACTTCA +
Preference number: 4 (lower is better)
Translates to: RAPQDGRIPKPFPVPPVCGSRSH*SSRGTS
Trigger: TGAAGTTCCCCTGGATGAGCAGTGTGAACGGCTGCC...GCAAACAGGAGGCACAGGAAAAGGCTTTGGGATGCGTCCGTCCTGTGGAGCCCG
59% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000031653.12
CDS-3UTR GCA 90 bp CTGCCCTCTCCCTGCACTGAGTCCCGTGCAACAGGCTTTGAACAGCACTGCCCCTTTCAGTCTCTCCCGTaGAAACTCCCACTTGCTGGC +
Preference number: 4 (lower is better)
Translates to: LPSPCTESRATGFEQHCPFQSLP*KLPLAG
Trigger: GCCAGCAAGTGGGAGTTTGCACGGGAGAGACTGAAA...GGGGCAGTGCTGTTCAAAGCCTGTTGCACGGGACTCAGTGCAGGGAGAGGGCAG
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000031653.12
CDS-3UTR TCA 90 bp GATGGGGTACACAGGGGAGCAGGTACCCATGATGCTGGCCCGGTCAGAGAATTAAGGCCGATGGGGGAGTaGTGCTCAGCCTTTTGTCCT +
Preference number: 4 (lower is better)
Translates to: DGVHRGAGTHDAGPVRELRPMGE*CSAFCP
Trigger: AGGACAAAAGGCTGAGCATCACTCCCCCATCGGCCT...TAATTCTCTGACCGGGCCAGCATCATGGGTACCTGCTCCCCTGTGTACCCCATC
58% GC, longest homopolymer 5 nt, total homopolymer stretches 17 nt.
Matches the following 1 transcripts:
ENSMUST00000031653.12
CDS-3UTR TCA 90 bp CCTACAAGTGATGCTGTGGCCCGGATTCCATGTCCCCTGCAGGAGTCTGCGGCGATGACCGTCATGCGCTaGGAGATGCTCTCAATTCTG +
Preference number: 4 (lower is better)
Translates to: PTSDAVARIPCPLQESAAMTVMR*EMLSIL
Trigger: CAGAATTGAGAGCATCTCTCAGCGCATGACGGTCAT...CGCCGCAGACTCCTGCAGGGGACATGGAATCCGGGCCACAGCATCACTTGTAGG
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000110529.6
CDS-3UTR TCA 90 bp CAAGAGCCACAGTGGGCTGCAGGCTGTCTCAGTGGGGATTGCACTGGGCCTCCAAGTCCGGCAGGTGGGTaGTTTCTTAATGCCAAATGC +
Preference number: 4 (lower is better)
Translates to: QEPQWAAGCLSGDCTGPPSPAGG*FLNAKC
Trigger: GCATTTGGCATTAAGAAATCACCCACCTGCCGGACT...TGGAGGCCCAGTGCAATCCCCACTGAGACAGCCTGCAGCCCACTGTGGCTCTTG
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000031653.12
CDS-3UTR TCA 90 bp CTGCCCTCTCCCTGCACTGAGTCCCGTGCAACAGGCTTTGAACAGCACTGCCCCTGTTGGACGTTGGCTTaGAGCAGGTCACCAAGTTTC +
Preference number: 4 (lower is better)
Translates to: LPSPCTESRATGFEQHCPCWTLA*SRSPSF
Trigger: GAAACTTGGTGACCTGCTTCAAGCCAACGTCCAACA...GGGGCAGTGCTGTTCAAAGCCTGTTGCACGGGACTCAGTGCAGGGAGAGGGCAG
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000031653.12
CDS-3UTR GCA 90 bp GCTGGGACAACCACTCTGCCTCTCTGGGTCTTGGTCCAACCAGCCCGATTTGGGATATGTTCCTGGCTCTaGACGCATAGGTGCCCGAGT +
Preference number: 4 (lower is better)
Translates to: AGTTTLPLWVLVQPARFGICSWL*THRCPS
Trigger: ACTCGGGCACCTATGCGTGCAGAGCCAGGAACATAT...CCCAAATCGGGCTGGTTGGACCAAGACCCAGAGAGGCAGAGTGGTTGTCCCAGC
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000031653.12
CDS-3UTR CCA 90 bp CGGGCTCCACAGGACGGACGCATCCCAAAGCCTTTTCCTGTGCCTCCTGTTTGCATAGAGAGGTGGGCTTaGAAGCGAGGACACGGACTT +
Preference number: 4 (lower is better)
Translates to: RAPQDGRIPKPFPVPPVCIERWA*KRGHGL
Trigger: AAGTCCGTGTCCTCGCTTCCAAGCCCACCTCTCTAT...GCAAACAGGAGGCACAGGAAAAGGCTTTGGGATGCGTCCGTCCTGTGGAGCCCG
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000031653.12
3UTR CAA 72 bp AGAGCCACAGTGGGCTGCAGGCTGTCTCAGTGGGGATaGCACTGGGCCTCCAGTCTCATCAGACAGAAAACC +
Preference number: 4 (lower is better)
Translates to: RATVGCRLSQWG*HWASSLIRQKT
Trigger: GGTTTTCTGTCTGATGAGACTGGAGGCCCAGTGCAATCCCCACTGAGACAGCCTGCAGCCCACTGTGGCTCT
58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000031653.12
CDS-3UTR TCA 90 bp GATGGGGTACACAGGGGAGCAGGTACCCATGATGCTGGCCCGGTCAGAGAATTATCAGGTCTTCCATGGTaGGGGGCTGCTTGGAGATCT +
Preference number: 4 (lower is better)
Translates to: DGVHRGAGTHDAGPVRELSGLPW*GAAWRS
Trigger: AGATCTCCAAGCAGCCCCTCACCATGGAAGACCTGA...TAATTCTCTGACCGGGCCAGCATCATGGGTACCTGCTCCCCTGTGTACCCCATC
57% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 1 transcripts:
ENSMUST00000031653.12
CDS-3UTR TCA 90 bp GCTGGGACAACCACTCTGCCTCTCTGGGTCTTGGTCCAACCAGCCCGATTTGGGGGAGGTGGAGTTCGGTaGAAGCTCCTCAAAGGTTTT +
Preference number: 4 (lower is better)
Translates to: AGTTTLPLWVLVQPARFGGGGVR*KLLKGF
Trigger: AAAACCTTTGAGGAGCTTTCACCGAACTCCACCTCC...CCCAAATCGGGCTGGTTGGACCAAGACCCAGAGAGGCAGAGTGGTTGTCCCAGC
57% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000031653.12
CDS-3UTR GCA 90 bp GTGCACCAAGAGCCACAGTGGGCTGCAGGCTGTCTCAGTGGGGATTGCACTGGGCCTGCTTGCATGACATaGTGGGTGCCTTTTAAACTC +
Preference number: 4 (lower is better)
Translates to: VHQEPQWAAGCLSGDCTGPACMT*WVPFKL
Trigger: GAGTTTAAAAGGCACCCAGCATGTCATGCAAGCAGG...CCCAGTGCAATCCCCACTGAGACAGCCTGCAGCCCACTGTGGCTCTTGGTGCAC
57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000031653.12
CDS-3UTR GCA 90 bp GATGGGGTACACAGGGGAGCAGGTACCCATGATGCTGGCCCGGTCAGAGAATTAATAGGACCGTCTTCCTaGTGTGGTTTCCTGCACCGG +
Preference number: 4 (lower is better)
Translates to: DGVHRGAGTHDAGPVRELIGPSS*CGFLHR
Trigger: CCGGTGCAGGAAACCACAGCAGGAAGACGGTCCTAT...TAATTCTCTGACCGGGCCAGCATCATGGGTACCTGCTCCCCTGTGTACCCCATC
57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000031653.12
CDS-3UTR GCA 90 bp CCCGAAACAGCGGAGGCCAGGAGTGAGAAGTCACTGAAGTGGCATAGCGGAGCCCCAGGTCCCGATGAATaGACTTTCTGGAGGACAGAA +
Preference number: 4 (lower is better)
Translates to: PETAEARSEKSLKWHSGAPGPDE*TFWRTE
Trigger: TTCTGTCCTCCAGAAAGTGCATTCATCGGGACCTGG...GGCTCCGCTATGCCACTTCAGTGACTTCTCACTCCTGGCCTCCGCTGTTTCGGG
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000031653.12
CDS-3UTR CCA 90 bp GCTGGGACAACCACTCTGCCTCTCTGGGTCTTGGTCCAACCAGCCCGATTTGGGCTGTGTATATGTTCCTaGCTCTGCACGCATAGGTGC +
Preference number: 4 (lower is better)
Translates to: AGTTTLPLWVLVQPARFGLCICS*LCTHRC
Trigger: GCACCTATGCGTGCAGAGCCAGGAACATATACACAG...CCCAAATCGGGCTGGTTGGACCAAGACCCAGAGAGGCAGAGTGGTTGTCCCAGC
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000031653.12
CDS-3UTR TCA 90 bp GCTGGGACAACCACTCTGCCTCTCTGGGTCTTGGTCCAACCAGCCCGATTTGGGAGTCACGTTTGCTCTTaGGGTAGTTGGACAGGTTTC +
Preference number: 4 (lower is better)
Translates to: AGTTTLPLWVLVQPARFGSHVCS*GSWTGF
Trigger: GAAACCTGTCCAACTACCTCAAGAGCAAACGTGACT...CCCAAATCGGGCTGGTTGGACCAAGACCCAGAGAGGCAGAGTGGTTGTCCCAGC
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000031653.12
CDS-3UTR TCA 90 bp GATGGGGTACACAGGGGAGCAGGTACCCATGATGCTGGCCCGGTCAGAGAATTACCAGGCTCTCTTTCTTaGGCTCCATATGCAAGGCTG +
Preference number: 4 (lower is better)
Translates to: DGVHRGAGTHDAGPVRELPGSLS*APYARL
Trigger: CAGCCTTGCATATGGAGCTCAAGAAAGAGAGCCTGG...TAATTCTCTGACCGGGCCAGCATCATGGGTACCTGCTCCCCTGTGTACCCCATC
56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000031653.12
CDS-3UTR CCA 90 bp CAAGAGCCACAGTGGGCTGCAGGCTGTCTCAGTGGGGATTGCACTGGGCCTCCAGCTTGCATGACATGCTaGGTGCCTTTTAAACTCAGT +
Preference number: 4 (lower is better)
Translates to: QEPQWAAGCLSGDCTGPPACMTC*VPFKLS
Trigger: ACTGAGTTTAAAAGGCACCCAGCATGTCATGCAAGC...TGGAGGCCCAGTGCAATCCCCACTGAGACAGCCTGCAGCCCACTGTGGCTCTTG
56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000031653.12
CDS-3UTR CCA 90 bp CATCTAATCACAGCAGGAAACACACGTGTAATTACCTGGGTGGACAGAGGAGGGGGCAGAGACCATGAGTaGGCTGCCTCCCCTCTGCAC +
Preference number: 4 (lower is better)
Translates to: HLITAGNTRVITWVDRGGGRDHE*AASPLH
Trigger: GTGCAGAGGGGAGGCAGCCCACTCATGGTCTCTGCC...CCCTCCTCTGTCCACCCAGGTAATTACACGTGTGTTTCCTGCTGTGATTAGATG
56% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000110529.6
CDS-3UTR CCA 90 bp CTGCCCTCTCCCTGCACTGAGTCCCGTGCAACAGGCTTTGAACAGCACTGCCCCGATAGTCCTCAAACATaGAGGTGGAGTTCGGTGAAA +
Preference number: 4 (lower is better)
Translates to: LPSPCTESRATGFEQHCPDSPQT*RWSSVK
Trigger: TTTCACCGAACTCCACCTCCATGTTTGAGGACTATC...GGGGCAGTGCTGTTCAAAGCCTGTTGCACGGGACTCAGTGCAGGGAGAGGGCAG
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000031653.12
CDS-3UTR TCA 90 bp CAAGAGCCACAGTGGGCTGCAGGCTGTCTCAGTGGGGATTGCACTGGGCCTCCATGGGTCCATAATGATTaGCAGGTAGTCTGTCTTTAC +
Preference number: 4 (lower is better)
Translates to: QEPQWAAGCLSGDCTGPPWVHND*QVVCLY
Trigger: GTAAAGACAGACTACCTGTCAATCATTATGGACCCA...TGGAGGCCCAGTGCAATCCCCACTGAGACAGCCTGCAGCCCACTGTGGCTCTTG
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000031653.12
CDS-3UTR GCA 90 bp GATGGGGTACACAGGGGAGCAGGTACCCATGATGCTGGCCCGGTCAGAGAATTAAAGGTGCTGCAGAATTaGCTGTTATCCCTCCCACAG +
Preference number: 4 (lower is better)
Translates to: DGVHRGAGTHDAGPVRELKVLQN*LLSLPQ
Trigger: CTGTGGGAGGGATAACAGGCAATTCTGCAGCACCTT...TAATTCTCTGACCGGGCCAGCATCATGGGTACCTGCTCCCCTGTGTACCCCATC
54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000031653.12
3UTR CAA 72 bp ACTATAGCTGGGACAACCACTCTGCCTCTCTGGGTCTaGGTCCAACCAGCCCGATTTGGGTACAGAGAAACC +
Preference number: 4 (lower is better)
Translates to: TIAGTTTLPLWV*VQPARFGYRET
Trigger: GGTTTCTCTGTACCCAAATCGGGCTGGTTGGACCAAGACCCAGAGAGGCAGAGTGGTTGTCCCAGCTATAGT
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000031653.12
CDS-3UTR GCA 90 bp CGGGCTCCACAGGACGGACGCATCCCAAAGCCTTTTCCTGTGCCTCCTGTTTGCCCTTTTTCATACACATaGACGGAGGTGTTGAAAGAC +
Preference number: 4 (lower is better)
Translates to: RAPQDGRIPKPFPVPPVCPFSYT*TEVLKD
Trigger: GTCTTTCAACACCTCCGTGCATGTGTATGAAAAAGG...GCAAACAGGAGGCACAGGAAAAGGCTTTGGGATGCGTCCGTCCTGTGGAGCCCG
53% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000031653.12
CDS-3UTR GCA 90 bp CTGCCCTCTCCCTGCACTGAGTCCCGTGCAACAGGCTTTGAACAGCACTGCCCCATGAAAATGTGGATCTaGAAAGCCGTCCTTGAAAAG +
Preference number: 4 (lower is better)
Translates to: LPSPCTESRATGFEQHCPMKMWI*KAVLEK
Trigger: CTTTTCAAGGACGGCTTTGCAGATCCACATTTTCAT...GGGGCAGTGCTGTTCAAAGCCTGTTGCACGGGACTCAGTGCAGGGAGAGGGCAG
53% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 1 transcripts:
ENSMUST00000031653.12
CDS-3UTR CCA 90 bp CGGGCTCCACAGGACGGACGCATCCCAAAGCCTTTTCCTGTGCCTCCTGTTTGCAGTCATACCTTTCTTTaGAGTGATTGTGGTGACAGG +
Preference number: 4 (lower is better)
Translates to: RAPQDGRIPKPFPVPPVCSHTFL*SDCGDR
Trigger: CCTGTCACCACAATCACTCCAAAGAAAGGTATGACT...GCAAACAGGAGGCACAGGAAAAGGCTTTGGGATGCGTCCGTCCTGTGGAGCCCG
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000031653.12
CDS-3UTR TCA 90 bp CGGGCTCCACAGGACGGACGCATCCCAAAGCCTTTTCCTGTGCCTCCTGTTTGCTGTACAGGAATTTATTaGCCACACAGGACAGTTTCA +
Preference number: 4 (lower is better)
Translates to: RAPQDGRIPKPFPVPPVCCTGIY*PHRTVS
Trigger: TGAAACTGTCCTGTGTGGTCAATAAATTCCTGTACA...GCAAACAGGAGGCACAGGAAAAGGCTTTGGGATGCGTCCGTCCTGTGGAGCCCG
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000031653.12
CDS-3UTR GCA 90 bp CTGCCCTCTCCCTGCACTGAGTCCCGTGCAACAGGCTTTGAACAGCACTGCCCCTTTCTTAATGCCAAATaGAGAGGCTTGAACGACTTT +
Preference number: 4 (lower is better)
Translates to: LPSPCTESRATGFEQHCPFLNAK*RGLNDF
Trigger: AAAGTCGTTCAAGCCTCTGCATTTGGCATTAAGAAA...GGGGCAGTGCTGTTCAAAGCCTGTTGCACGGGACTCAGTGCAGGGAGAGGGCAG
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000031653.12
CDS-3UTR CCA 90 bp TCACACACTGGGAGAAATGTCTGTTCTTCCTCAGTGCCATCTACTTGGGCCTTGTGGAGAAGCAGAAGCTaGGCCTCGGCAGATCGGAAA +
Preference number: 4 (lower is better)
Translates to: SHTGRNVCSSSVPSTWALWRSRS*ASADRK
Trigger: TTTCCGATCTGCCGAGGCCCAGCTTCTGCTTCTCCA...CAAGGCCCAAGTAGATGGCACTGAGGAAGAACAGACATTTCTCCCAGTGTGTGA
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000031653.12
CDS-3UTR GCA 90 bp CTGCAGTCAGGGGCTGTCAGTCCAGCCAAGGACAATGAGGAACAGCATCTAATCCCTGCTTGCATGACATaGTGGGTGCCTTTTAAACTC +
Preference number: 4 (lower is better)
Translates to: LQSGAVSPAKDNEEQHLIPACMT*WVPFKL
Trigger: GAGTTTAAAAGGCACCCAGCATGTCATGCAAGCAGG...GATTAGATGCTGTTCCTCATTGTCCTTGGCTGGACTGACAGCCCCTGACTGCAG
51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000110529.6
CDS-3UTR GCA 90 bp GATGGGGTACACAGGGGAGCAGGTACCCATGATGCTGGCCCGGTCAGAGAATTAACAGGTTTCCGTATTTaGAGTATTCCACGATCACCA +
Preference number: 4 (lower is better)
Translates to: DGVHRGAGTHDAGPVRELTGFRI*SIPRSP
Trigger: TGGTGATCGTGGAATACTGCAAATACGGAAACCTGT...TAATTCTCTGACCGGGCCAGCATCATGGGTACCTGCTCCCCTGTGTACCCCATC
51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000031653.12
CDS-3UTR GCA 90 bp GTTTCCATTTTTCTTCCTACCCTAAAAACTCAGAAGGAACCGTCTTCCTTCTTTCGGGGCTTCTGGCCCTaGTCCAGGCCTGGTTCCAGG +
Preference number: 4 (lower is better)
Translates to: VSIFLPTLKTQKEPSSFFRGFWP*SRPGSR
Trigger: CCTGGAACCAGGCCTGGAGCAGGGCCAGAAGCCCCG...AAAGAAGGAAGACGGTTCCTTCTGAGTTTTTAGGGTAGGAAGAAAAATGGAAAC
51% GC, longest homopolymer 5 nt, total homopolymer stretches 14 nt.
Matches the following 1 transcripts:
ENSMUST00000031653.12
CDS-3UTR CCA 90 bp TCTCGTCTTTCGGCTCCTGCCTACAAGAGTGCTCAACCTAAGAATCATACTTTGACCGTCTTCCTGCTGTaGTTTCCTGCACCGGCTGCT +
Preference number: 4 (lower is better)
Translates to: SRLSAPAYKSAQPKNHTLTVFLL*FPAPAA
Trigger: AGCAGCCGGTGCAGGAAACCACAGCAGGAAGACGGT...CAAAGTATGATTCTTAGGTTGAGCACTCTTGTAGGCAGGAGCCGAAAGACGAGA
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000110529.6
CDS-3UTR CCA 90 bp TCACACACTGGGAGAAATGTCTGTTCTTCCTCAGTGCCATCTACTTGGGCCTTGAGGCCTTCACTTTCATaGACAGCCGATAGGACCGTC +
Preference number: 4 (lower is better)
Translates to: SHTGRNVCSSSVPSTWALRPSLS*TADRTV
Trigger: GACGGTCCTATCGGCTGTCCATGAAAGTGAAGGCCT...CAAGGCCCAAGTAGATGGCACTGAGGAAGAACAGACATTTCTCCCAGTGTGTGA
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000031653.12
CDS-3UTR CCA 90 bp CCTAGTCACACACTGGCGATCTCACACACTGGGAGAAATGTCTGTTCTTCCTCAGAGCTTTGTACTCACTaGCTGTGGCCCCCTCTTTCA +
Preference number: 4 (lower is better)
Translates to: PSHTLAISHTGRNVCSSSELCTH*LWPPLS
Trigger: TGAAAGAGGGGGCCACAGCCAGTGAGTACAAAGCTC...TGAGGAAGAACAGACATTTCTCCCAGTGTGTGAGATCGCCAGTGTGTGACTAGG
51% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000031653.12
3UTR CAA 72 bp CTGAGGCCCCTGAAAGTTCCTACCGGTGCTGAGGTATaGTTTCCCTGGAGGAAGACATTGCCTCAGAATGAA +
Preference number: 4 (lower is better)
Translates to: LRPLKVPTGAEV*FPWRKTLPQNE
Trigger: TTCATTCTGAGGCAATGTCTTCCTCCAGGGAAACAATACCTCAGCACCGGTAGGAACTTTCAGGGGCCTCAG
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000110529.6
CDS-3UTR TCA 90 bp TCACACACTGGGAGAAATGTCTGTTCTTCCTCAGTGCCATCTACTTGGGCCTTGATGACCGTCATGCGCTaGGAGATGCTCTCAATTCTG +
Preference number: 4 (lower is better)
Translates to: SHTGRNVCSSSVPSTWALMTVMR*EMLSIL
Trigger: CAGAATTGAGAGCATCTCTCAGCGCATGACGGTCAT...CAAGGCCCAAGTAGATGGCACTGAGGAAGAACAGACATTTCTCCCAGTGTGTGA
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000031653.12
CDS-3UTR CCA 90 bp CTTCACACGTCACTAACTGGGGTTACATTCTTGTTAGTCAAAACAGCAACAACAGGCAGAGACCATGAGTaGGCTGCCTCCCCTCTGCAC +
Preference number: 4 (lower is better)
Translates to: LHTSLTGVTFLLVKTATTGRDHE*AASPLH
Trigger: GTGCAGAGGGGAGGCAGCCCACTCATGGTCTCTGCC...TGTTGTTGCTGTTTTGACTAACAAGAATGTAACCCCAGTTAGTGACGTGTGAAG
50% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 1 transcripts:
ENSMUST00000031653.12
3UTR CAA 72 bp AATGTCTGTTCTTCCTCAGTGCCATCTACTTGGGCCTaGAATGGCAAACGGTTTGAATGCCACTGTCCAGGC +
Preference number: 4 (lower is better)
Translates to: NVCSSSVPSTWA*NGKRFECHCPG
Trigger: GCCTGGACAGTGGCATTCAAACCGTTTGCCATTCAAGGCCCAAGTAGATGGCACTGAGGAAGAACAGACATT
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000031653.12
3UTR CAA 72 bp GCACACCTTCCCCTACTCACAGGGAAGGAATGGACTTaGCATGCTCAGTTCAGTTCAGGTTTTGTTCTGAGG +
Preference number: 4 (lower is better)
Translates to: AHLPLLTGKEWT*HAQFSSGFVLR
Trigger: CCTCAGAACAAAACCTGAACTGAACTGAGCATGCAAAGTCCATTCCTTCCCTGTGAGTAGGGGAAGGTGTGC
50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000110529.6
CDS-3UTR TCA 90 bp ATGGAATTCTTAAAATTGTCTCTTGGGATGCACACCTTCCCCTACTCACAGGGACTGAGCCATATCCTGTaGGAAGCAGACACCCGAGCA +
Preference number: 4 (lower is better)
Translates to: MEFLKLSLGMHTFPYSQGLSHIL*EADTRA
Trigger: TGCTCGGGTGTCTGCTTCTCACAGGATATGGCTCAG...TCCCTGTGAGTAGGGGAAGGTGTGCATCCCAAGAGACAATTTTAAGAATTCCAT
49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000110529.6
CDS-3UTR TCA 90 bp TTTTGGTCATTATTGCTGGCTTCCCCCAGCCATGTAGTTCACATACAAAGATCACCTCCCCTCTGCACTTaGGAAAGAGAGTCTGGCCTG +
Preference number: 4 (lower is better)
Translates to: FWSLLLASPSHVVHIQRSPPLCT*ERESGL
Trigger: CAGGCCAGACTCTCTTTCTCAAGTGCAGAGGGGAGG...TGATCTTTGTATGTGAACTACATGGCTGGGGGAAGCCAGCAATAATGACCAAAA
49% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 1 transcripts:
ENSMUST00000110529.6
CDS-3UTR TCA 90 bp CCTAGTCACACACTGGCGATCTCACACACTGGGAGAAATGTCTGTTCTTCCTCATTAACCACATTCAGATaGTGGCCGATGTGGGTCAAG +
Preference number: 4 (lower is better)
Translates to: PSHTLAISHTGRNVCSSSLTTFR*WPMWVK
Trigger: CTTGACCCACATCGGCCATCATCTGAATGTGGTTAA...TGAGGAAGAACAGACATTTCTCCCAGTGTGTGAGATCGCCAGTGTGTGACTAGG
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000031653.12
CDS-3UTR GCA 90 bp GTGATACCATTGATTAGTCTTTCCTCTGGGCTGACAACTTCCAGGCTGCTGATTATATGTTCCTGGCTCTaGACGCATAGGTGCCCGAGT +
Preference number: 4 (lower is better)
Translates to: VIPLISLSSGLTTSRLLIICSWL*THRCPS
Trigger: ACTCGGGCACCTATGCGTGCAGAGCCAGGAACATAT...AATCAGCAGCCTGGAAGTTGTCAGCCCAGAGGAAAGACTAATCAATGGTATCAC
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000110529.6
CDS-3UTR CCA 90 bp GATGGGGTACACAGGGGAGCAGGTACCCATGATGCTGGCCCGGTCAGAGAATTAATCTTAAGAACACTGTaGAACACATTGTTGTGGGAA +
Preference number: 4 (lower is better)
Translates to: DGVHRGAGTHDAGPVRELILRTL*NTLLWE
Trigger: TTCCCACAACAATGTGTTCCACAGTGTTCTTAAGAT...TAATTCTCTGACCGGGCCAGCATCATGGGTACCTGCTCCCCTGTGTACCCCATC
49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000031653.12
3UTR CAA 72 bp CAAGCGCCACCCCCACTGACACATGTTAAATATGCTTaGGATGGTAAACAGACAACAGAAGACTCCCGGGAA +
Preference number: 4 (lower is better)
Translates to: QAPPPLTHVKYA*DGKQTTEDSRE
Trigger: TTCCCGGGAGTCTTCTGTTGTCTGTTTACCATCCAAAGCATATTTAACATGTGTCAGTGGGGGTGGCGCTTG
49% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000031653.12
3UTR CAA 72 bp ACATGGGTTGTGGACATCTTTGAATGCCATCAAAGCTaGGTGAAGGGCTTTAAAACAGTGCCCAGGGGCCAT +
Preference number: 4 (lower is better)
Translates to: TWVVDIFECHQS*VKGFKTVPRGH
Trigger: ATGGCCCCTGGGCACTGTTTTAAAGCCCTTCACCAAGCTTTGATGGCATTCAAAGATGTCCACAACCCATGT
49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000110529.6
CDS-3UTR TCA 90 bp GCCATCGTCATTAGACCCCAGACAAGGTATGAAACAGATGAAAATAAGATGGTTCCTCCCCTCTGCACTTaGGAAAGAGAGTCTGGCCTG +
Preference number: 4 (lower is better)
Translates to: AIVIRPQTRYETDENKMVPPLCT*ERESGL
Trigger: CAGGCCAGACTCTCTTTCTCAAGTGCAGAGGGGAGG...AACCATCTTATTTTCATCTGTTTCATACCTTGTCTGGGGTCTAATGACGATGGC
48% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 1 transcripts:
ENSMUST00000031653.12
CDS-3UTR GCA 90 bp TTTTGGTCATTATTGCTGGCTTCCCCCAGCCATGTAGTTCACATACAAAGATCAAGAGTCTGGCCTGCTTaGATGACATGCTGGGTGCCT +
Preference number: 4 (lower is better)
Translates to: FWSLLLASPSHVVHIQRSRVWPA*MTCWVP
Trigger: AGGCACCCAGCATGTCATGCAAGCAGGCCAGACTCT...TGATCTTTGTATGTGAACTACATGGCTGGGGGAAGCCAGCAATAATGACCAAAA
48% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000110529.6
CDS-3UTR GCA 90 bp GGGAGCTTGCATAAATTACACATCACCTGCTGTGCCAAGGAGCATAAAGTGCTTCCAAGGTCAAGGTGCTaGAGAATTGCCTGTTATCCC +
Preference number: 4 (lower is better)
Translates to: GSLHKLHITCCAKEHKVLPRSRC*RIACYP
Trigger: GGGATAACAGGCAATTCTGCAGCACCTTGACCTTGG...AAGCACTTTATGCTCCTTGGCACAGCAGGTGATGTGTAATTTATGCAAGCTCCC
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000031653.12
CDS-3UTR GCA 90 bp TCTCGTCTTTCGGCTCCTGCCTACAAGAGTGCTCAACCTAAGAATCATACTTTGCCAAGGTCAAGGTGCTaGAGAATTGCCTGTTATCCC +
Preference number: 4 (lower is better)
Translates to: SRLSAPAYKSAQPKNHTLPRSRC*RIACYP
Trigger: GGGATAACAGGCAATTCTGCAGCACCTTGACCTTGG...CAAAGTATGATTCTTAGGTTGAGCACTCTTGTAGGCAGGAGCCGAAAGACGAGA
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000110529.6
CDS-3UTR GCA 90 bp CCTAGTCACACACTGGCGATCTCACACACTGGGAGAAATGTCTGTTCTTCCTCAACACATCGCTCTTGGTaGTGTAGACCTTGTCAAAGA +
Preference number: 4 (lower is better)
Translates to: PSHTLAISHTGRNVCSSSTHRSW*CRPCQR
Trigger: TCTTTGACAAGGTCTACAGCACCAAGAGCGATGTGT...TGAGGAAGAACAGACATTTCTCCCAGTGTGTGAGATCGCCAGTGTGTGACTAGG
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000031653.12
CDS-3UTR GCA 90 bp GTTTCCATTTTTCTTCCTACCCTAAAAACTCAGAAGGAACCGTCTTCCTTCTTTGGGTTCTCATCCGCATaGCTTCCTTCAGGCGGCTGC +
Preference number: 4 (lower is better)
Translates to: VSIFLPTLKTQKEPSSFFGFSSA*LPSGGC
Trigger: GCAGCCGCCTGAAGGAAGGCATGCGGATGAGAACCC...AAAGAAGGAAGACGGTTCCTTCTGAGTTTTTAGGGTAGGAAGAAAAATGGAAAC
48% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 1 transcripts:
ENSMUST00000031653.12
CDS-3UTR CCA 90 bp ATGGAATTCTTAAAATTGTCTCTTGGGATGCACACCTTCCCCTACTCACAGGGAAGGCCTTCACTTTCATaGACAGCCGATAGGACCGTC +
Preference number: 4 (lower is better)
Translates to: MEFLKLSLGMHTFPYSQGRPSLS*TADRTV
Trigger: GACGGTCCTATCGGCTGTCCATGAAAGTGAAGGCCT...TCCCTGTGAGTAGGGGAAGGTGTGCATCCCAAGAGACAATTTTAAGAATTCCAT
48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000110529.6
CDS-3UTR TCA 90 bp GCCATCGTCATTAGACCCCAGACAAGGTATGAAACAGATGAAAATAAGATGGTTCATACACGGTGCAAGTaGGGACTTGTCTGCTGCCCA +
Preference number: 4 (lower is better)
Translates to: AIVIRPQTRYETDENKMVHTRCK*GLVCCP
Trigger: TGGGCAGCAGACAAGTCCTCACTTGCACCGTGTATG...AACCATCTTATTTTCATCTGTTTCATACCTTGTCTGGGGTCTAATGACGATGGC
47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000031653.12
CDS-3UTR GCA 90 bp CAGAAGAGCAGACACACAAAAGAAACAGAGTACAGGGATCTTCAAATCCAAACAATAGGACCGTCTTCCTaGTGTGGTTTCCTGCACCGG +
Preference number: 4 (lower is better)
Translates to: QKSRHTKETEYRDLQIQTIGPSS*CGFLHR
Trigger: CCGGTGCAGGAAACCACAGCAGGAAGACGGTCCTAT...TGTTTGGATTTGAAGATCCCTGTACTCTGTTTCTTTTGTGTGTCTGCTCTTCTG
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000110529.6
CDS-3UTR GCA 90 bp GCCATCGTCATTAGACCCCAGACAAGGTATGAAACAGATGAAAATAAGATGGTTGTGCAAACTCCCACTTaGTGGCATCATAGGGCAGCC +
Preference number: 4 (lower is better)
Translates to: AIVIRPQTRYETDENKMVVQTPT*WHHRAA
Trigger: GGCTGCCCTATGATGCCAGCAAGTGGGAGTTTGCAC...AACCATCTTATTTTCATCTGTTTCATACCTTGTCTGGGGTCTAATGACGATGGC
47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000031653.12
CDS-3UTR TCA 90 bp GGGAGCTTGCATAAATTACACATCACCTGCTGTGCCAAGGAGCATAAAGTGCTTTATTTGTTCCTTCTATaGCCGTCATGCGCTGAGAGA +
Preference number: 4 (lower is better)
Translates to: GSLHKLHITCCAKEHKVLYLFLL*PSCAER
Trigger: TCTCTCAGCGCATGACGGTCATAGAAGGAACAAATA...AAGCACTTTATGCTCCTTGGCACAGCAGGTGATGTGTAATTTATGCAAGCTCCC
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000031653.12
CDS-3UTR GCA 90 bp CATCTAATCACAGCAGGAAACACACGTGTAATTACCTGGGTGGACAGAGGAGGGAGATGCTCTCTTAGTTaGTTTACCAGGGTAATTCCA +
Preference number: 4 (lower is better)
Translates to: HLITAGNTRVITWVDRGGRCSLS*FTRVIP
Trigger: TGGAATTACCCTGGTAAAGCAACTAAGAGAGCATCT...CCCTCCTCTGTCCACCCAGGTAATTACACGTGTGTTTCCTGCTGTGATTAGATG
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000110529.6
CDS-3UTR GCA 90 bp CATCTAATCACAGCAGGAAACACACGTGTAATTACCTGGGTGGACAGAGGAGGGTTAAATAGCCTTGACTaGTTTATGCCCAGCAAGATC +
Preference number: 4 (lower is better)
Translates to: HLITAGNTRVITWVDRGGLNSLD*FMPSKI
Trigger: GATCTTGCTGGGCATAAAGCAGTCAAGGCTATTTAA...CCCTCCTCTGTCCACCCAGGTAATTACACGTGTGTTTCCTGCTGTGATTAGATG
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000110529.6
CDS-3UTR GCA 90 bp CTGCAGTCAGGGGCTGTCAGTCCAGCCAAGGACAATGAGGAACAGCATCTAATCATTCTTCATTCTCAGTaGAGAAGTCATACCTTTCTT +
Preference number: 4 (lower is better)
Translates to: LQSGAVSPAKDNEEQHLIILHSQ*RSHTFL
Trigger: AAGAAAGGTATGACTTCTGCACTGAGAATGAAGAAT...GATTAGATGCTGTTCCTCATTGTCCTTGGCTGGACTGACAGCCCCTGACTGCAG
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000110529.6
3UTR CAA 72 bp GGGCTTTCTTATTACGTTATCATGTCCAAACTCATTTaGGGAGGAGCGTTTCCTCTGGGCCTGAAAGTTAGC +
Preference number: 4 (lower is better)
Translates to: GLSYYVIMSKLI*GGAFPLGLKVS
Trigger: GCTAACTTTCAGGCCCAGAGGAAACGCTCCTCCCAAAATGAGTTTGGACATGATAACGTAATAAGAAAGCCC
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000110529.6
CDS-3UTR TCA 90 bp ATGCAATACATTATAATATTAAAAATACCACACAGGAACGGCAGTACCCTCCAGCATACACGGTGCAAGTaGGGACTTGTCTGCTGCCCA +
Preference number: 4 (lower is better)
Translates to: MQYIIILKIPHRNGSTLQHTRCK*GLVCCP
Trigger: TGGGCAGCAGACAAGTCCTCACTTGCACCGTGTATG...CTGGAGGGTACTGCCGTTCCTGTGTGGTATTTTTAATATTATAATGTATTGCAT
44% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000110529.6
CDS-3UTR GCA 90 bp GCCATCGTCATTAGACCCCAGACAAGGTATGAAACAGATGAAAATAAGATGGTTAAAGAGAGTCTGGCCTaGTTGCATGACATGCTGGGT +
Preference number: 4 (lower is better)
Translates to: AIVIRPQTRYETDENKMVKESLA*LHDMLG
Trigger: ACCCAGCATGTCATGCAAGCAGGCCAGACTCTCTTT...AACCATCTTATTTTCATCTGTTTCATACCTTGTCTGGGGTCTAATGACGATGGC
44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000031653.12
CDS-3UTR GCA 90 bp GTGATACCATTGATTAGTCTTTCCTCTGGGCTGACAACTTCCAGGCTGCTGATTCCTTTTTCATACACATaGACGGAGGTGTTGAAAGAC +
Preference number: 4 (lower is better)
Translates to: VIPLISLSSGLTTSRLLIPFSYT*TEVLKD
Trigger: GTCTTTCAACACCTCCGTGCATGTGTATGAAAAAGG...AATCAGCAGCCTGGAAGTTGTCAGCCCAGAGGAAAGACTAATCAATGGTATCAC
44% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000110529.6
CDS-3UTR GCA 90 bp CCTAGTCACACACTGGCGATCTCACACACTGGGAGAAATGTCTGTTCTTCCTCATTGCTGATACTATGGTaGATGGTTCTGTTGTTAACT +
Preference number: 4 (lower is better)
Translates to: PSHTLAISHTGRNVCSSSLLILW*MVLLLT
Trigger: AGTTAACAACAGAACCATGCACCATAGTATCAGCAA...TGAGGAAGAACAGACATTTCTCCCAGTGTGTGAGATCGCCAGTGTGTGACTAGG
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000031653.12
CDS-3UTR GCA 90 bp GGGAGCTTGCATAAATTACACATCACCTGCTGTGCCAAGGAGCATAAAGTGCTTTCTTTGGGGTCTTTGTaGCAGCAATCCAACATGATT +
Preference number: 4 (lower is better)
Translates to: GSLHKLHITCCAKEHKVLSLGSL*QQSNMI
Trigger: AATCATGTTGGATTGCTGGCACAAAGACCCCAAAGA...AAGCACTTTATGCTCCTTGGCACAGCAGGTGATGTGTAATTTATGCAAGCTCCC
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000031653.12
CDS-3UTR CCA 90 bp CTTCACACGTCACTAACTGGGGTTACATTCTTGTTAGTCAAAACAGCAACAACAGAGGTGTTGAAAGACTaGAACGAGGACCCACTCTTC +
Preference number: 4 (lower is better)
Translates to: LHTSLTGVTFLLVKTATTEVLKD*NEDPLF
Trigger: GAAGAGTGGGTCCTCGTTCCAGTCTTTCAACACCTC...TGTTGTTGCTGTTTTGACTAACAAGAATGTAACCCCAGTTAGTGACGTGTGAAG
44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000031653.12
CDS-3UTR TCA 90 bp TTTTGGTCATTATTGCTGGCTTCCCCCAGCCATGTAGTTCACATACAAAGATCATATTTGTTCCTTCTATaGCCGTCATGCGCTGAGAGA +
Preference number: 4 (lower is better)
Translates to: FWSLLLASPSHVVHIQRSYLFLL*PSCAER
Trigger: TCTCTCAGCGCATGACGGTCATAGAAGGAACAAATA...TGATCTTTGTATGTGAACTACATGGCTGGGGGAAGCCAGCAATAATGACCAAAA
43% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000110529.6
CDS-3UTR TCA 90 bp TCTCGTCTTTCGGCTCCTGCCTACAAGAGTGCTCAACCTAAGAATCATACTTTGTGTACAGGAATTTATTaGCCACACAGGACAGTTTCA +
Preference number: 4 (lower is better)
Translates to: SRLSAPAYKSAQPKNHTLCTGIY*PHRTVS
Trigger: TGAAACTGTCCTGTGTGGTCAATAAATTCCTGTACA...CAAAGTATGATTCTTAGGTTGAGCACTCTTGTAGGCAGGAGCCGAAAGACGAGA
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000110529.6
CDS-3UTR TCA 90 bp GCCATCGTCATTAGACCCCAGACAAGGTATGAAACAGATGAAAATAAGATGGTTTGTGGGTCAAGATCTTaGGTTCGGTCATCAGAGCTT +
Preference number: 4 (lower is better)
Translates to: AIVIRPQTRYETDENKMVCGSRS*VRSSEL
Trigger: AAGCTCTGATGACCGAACTCAAGATCTTGACCCACA...AACCATCTTATTTTCATCTGTTTCATACCTTGTCTGGGGTCTAATGACGATGGC
43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000031653.12
CDS-3UTR GCA 90 bp TCACACACTGGGAGAAATGTCTGTTCTTCCTCAGTGCCATCTACTTGGGCCTTGTTTGTACGTTGCATTTaGTATTATAAAGCCTCTCCT +
Preference number: 4 (lower is better)
Translates to: SHTGRNVCSSSVPSTWALFVRCI*YYKASP
Trigger: AGGAGAGGCTTTATAATAGCAAATGCAACGTACAAA...CAAGGCCCAAGTAGATGGCACTGAGGAAGAACAGACATTTCTCCCAGTGTGTGA
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000031653.12
CDS-3UTR GCA 90 bp GGGAGCTTGCATAAATTACACATCACCTGCTGTGCCAAGGAGCATAAAGTGCTTAGATGCTCTCTTAGTTaGTTTACCAGGGTAATTCCA +
Preference number: 4 (lower is better)
Translates to: GSLHKLHITCCAKEHKVLRCSLS*FTRVIP
Trigger: TGGAATTACCCTGGTAAAGCAACTAAGAGAGCATCT...AAGCACTTTATGCTCCTTGGCACAGCAGGTGATGTGTAATTTATGCAAGCTCCC
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000031653.12
CDS-3UTR CCA 90 bp ATGCAATACATTATAATATTAAAAATACCACACAGGAACGGCAGTACCCTCCAGATAGAGAGGTGGGCTTaGAAGCGAGGACACGGACTT +
Preference number: 4 (lower is better)
Translates to: MQYIIILKIPHRNGSTLQIERWA*KRGHGL
Trigger: AAGTCCGTGTCCTCGCTTCCAAGCCCACCTCTCTAT...CTGGAGGGTACTGCCGTTCCTGTGTGGTATTTTTAATATTATAATGTATTGCAT
43% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000110529.6
CDS-3UTR CCA 90 bp ATGGAATTCTTAAAATTGTCTCTTGGGATGCACACCTTCCCCTACTCACAGGGAAGTCATACCTTTCTTTaGAGTGATTGTGGTGACAGG +
Preference number: 4 (lower is better)
Translates to: MEFLKLSLGMHTFPYSQGSHTFL*SDCGDR
Trigger: CCTGTCACCACAATCACTCCAAAGAAAGGTATGACT...TCCCTGTGAGTAGGGGAAGGTGTGCATCCCAAGAGACAATTTTAAGAATTCCAT
43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000110529.6
CDS-3UTR CCA 90 bp ATGGTTAGCTTTAACCCAAATCTTGCAAAGAACACCCAAAAGGGGCTAGTTGTAAGATCCGAGAGAAAATaGCCTTTTTGCCGCAGTGCT +
Preference number: 4 (lower is better)
Translates to: MVSFNPNLAKNTQKGLVVRSERK*PFCRSA
Trigger: AGCACTGCGGCAAAAAGGCCATTTTCTCTCGGATCT...TACAACTAGCCCCTTTTGGGTGTTCTTTGCAAGATTTGGGTTAAAGCTAACCAT
43% GC, longest homopolymer 5 nt, total homopolymer stretches 17 nt.
Matches the following 1 transcripts:
ENSMUST00000110529.6
CDS-3UTR CCA 90 bp ATGGTTAGCTTTAACCCAAATCTTGCAAAGAACACCCAAAAGGGGCTAGTTGTAGCTTGCATGACATGCTaGGTGCCTTTTAAACTCAGT +
Preference number: 4 (lower is better)
Translates to: MVSFNPNLAKNTQKGLVVACMTC*VPFKLS
Trigger: ACTGAGTTTAAAAGGCACCCAGCATGTCATGCAAGC...TACAACTAGCCCCTTTTGGGTGTTCTTTGCAAGATTTGGGTTAAAGCTAACCAT
42% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 1 transcripts:
ENSMUST00000110529.6
CDS-3UTR CCA 90 bp TTGAAATCACAGCCCGCAGAAAACTTTTCAATCTATAATGACTTGTGCATGCATGAGGTGTTGAAAGACTaGAACGAGGACCCACTCTTC +
Preference number: 4 (lower is better)
Translates to: LKSQPAENFSIYNDLCMHEVLKD*NEDPLF
Trigger: GAAGAGTGGGTCCTCGTTCCAGTCTTTCAACACCTC...ATGCATGCACAAGTCATTATAGATTGAAAAGTTTTCTGCGGGCTGTGATTTCAA
42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000110529.6
CDS-3UTR CCA 90 bp ATGCAATACATTATAATATTAAAAATACCACACAGGAACGGCAGTACCCTCCAGCTGTGTATATGTTCCTaGCTCTGCACGCATAGGTGC +
Preference number: 4 (lower is better)
Translates to: MQYIIILKIPHRNGSTLQLCICS*LCTHRC
Trigger: GCACCTATGCGTGCAGAGCCAGGAACATATACACAG...CTGGAGGGTACTGCCGTTCCTGTGTGGTATTTTTAATATTATAATGTATTGCAT
42% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000110529.6
CDS-3UTR CCA 90 bp CTTCACACGTCACTAACTGGGGTTACATTCTTGTTAGTCAAAACAGCAACAACAGATGAATGCACTTTCTaGAGGACAGAAACTCCATGC +
Preference number: 4 (lower is better)
Translates to: LHTSLTGVTFLLVKTATTDECTF*RTETPC
Trigger: GCATGGAGTTTCTGTCCTCCAGAAAGTGCATTCATC...TGTTGTTGCTGTTTTGACTAACAAGAATGTAACCCCAGTTAGTGACGTGTGAAG
42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000031653.12
CDS-3UTR GCA 90 bp GGGAGCTTGCATAAATTACACATCACCTGCTGTGCCAAGGAGCATAAAGTGCTTATTCTTCATTCTCAGTaGAGAAGTCATACCTTTCTT +
Preference number: 4 (lower is better)
Translates to: GSLHKLHITCCAKEHKVLILHSQ*RSHTFL
Trigger: AAGAAAGGTATGACTTCTGCACTGAGAATGAAGAAT...AAGCACTTTATGCTCCTTGGCACAGCAGGTGATGTGTAATTTATGCAAGCTCCC
41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000031653.12
CDS-3UTR GCA 90 bp GTTTCCATTTTTCTTCCTACCCTAAAAACTCAGAAGGAACCGTCTTCCTTCTTTTTAAATAGCCTTGACTaGTTTATGCCCAGCAAGATC +
Preference number: 4 (lower is better)
Translates to: VSIFLPTLKTQKEPSSFFLNSLD*FMPSKI
Trigger: GATCTTGCTGGGCATAAAGCAGTCAAGGCTATTTAA...AAAGAAGGAAGACGGTTCCTTCTGAGTTTTTAGGGTAGGAAGAAAAATGGAAAC
39% GC, longest homopolymer 5 nt, total homopolymer stretches 15 nt.
Matches the following 1 transcripts:
ENSMUST00000031653.12
CDS-3UTR GCA 90 bp CAGAAGAGCAGACACACAAAAGAAACAGAGTACAGGGATCTTCAAATCCAAACATTTGTACGTTGCATTTaGTATTATAAAGCCTCTCCT +
Preference number: 4 (lower is better)
Translates to: QKSRHTKETEYRDLQIQTFVRCI*YYKASP
Trigger: AGGAGAGGCTTTATAATAGCAAATGCAACGTACAAA...TGTTTGGATTTGAAGATCCCTGTACTCTGTTTCTTTTGTGTGTCTGCTCTTCTG
38% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000110529.6
CDS-3UTR GCA 90 bp TTGAAATCACAGCCCGCAGAAAACTTTTCAATCTATAATGACTTGTGCATGCATTTGCTGATACTATGGTaGATGGTTCTGTTGTTAACT +
Preference number: 4 (lower is better)
Translates to: LKSQPAENFSIYNDLCMHLLILW*MVLLLT
Trigger: AGTTAACAACAGAACCATGCACCATAGTATCAGCAA...ATGCATGCACAAGTCATTATAGATTGAAAAGTTTTCTGCGGGCTGTGATTTCAA
37% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000110529.6
CDS-3UTR CAA 90 bp TTCCTGCCACCGTGGGTCAAGGGTGCCCTGCCCTCTCCCTGCACTGAGTCCCGTGATAGAGAGGTGGGCTaGGAAGCGAGGACACGGACT +
Preference number: 5 (lower is better)
Translates to: FLPPWVKGALPSPCTESRDREVG*EARTRT
Trigger: AGTCCGTGTCCTCGCTTCCAAGCCCACCTCTCTATC...ACGGGACTCAGTGCAGGGAGAGGGCAGGGCACCCTTGACCCACGGTGGCAGGAA
63% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000031653.12
CDS TCA 90 bp GCTCAGCCTTTTGTCCTCCTGGCTCACGGTCGTGGGCAGAGACCATaGGTGGGCTGCCTCCCCTCTGCACTTGAGAAAGAGAGTCTGGCC +
Preference number: 5 (lower is better)
Translates to: AQPFVLLAHGRGQRP*VGCLPSALEKESLA
Trigger: GGCCAGACTCTCTTTCTCAAGTGCAGAGGGGAGGCAGCCCACTCATGGTCTCTGCCCACGACCGTGAGCCAGGAGGACAAAAGGCTGAGC
61% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000031653.12
ENSMUST00000110529.6
CDS GCA 90 bp CTCGTATTGAGCTCCGTGGTGGCGGTGCAGTTGAGGACAAGAGTCTaGCCGTGGAGCAGTCTCACTGGGCTCGGCGGGCGTATTTGGACA +
Preference number: 5 (lower is better)
Translates to: LVLSSVVAVQLRTRV*PWSSLTGLGGRIWT
Trigger: TGTCCAAATACGCCCGCCGAGCCCAGTGAGACTGCTCCACGGGCAGACTCTTGTCCTCAACTGCACCGCCACCACGGAGCTCAATACGAG
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000031653.12
ENSMUST00000110529.6
CDS CCA 90 bp TTGAGCTCCGTGGTGGCGGTGCAGTTGAGGACAAGAGTCTGCCCGTaGAGCAGTCTCACTGGGCTCGGCGGGCGTATTTGGACATCTAGG +
Preference number: 5 (lower is better)
Translates to: LSSVVAVQLRTRVCP*SSLTGLGGRIWTSR
Trigger: CCTAGATGTCCAAATACGCCCGCCGAGCCCAGTGAGACTGCTCCACGGGCAGACTCTTGTCCTCAACTGCACCGCCACCACGGAGCTCAA
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000031653.12
ENSMUST00000110529.6
CDS-3UTR CAA 90 bp CCTACAAGTGATGCTGTGGCCCGGATTCCATGTCCCCTGCAGGAGTCTGCGGCGGATAGAGAGGTGGGCTaGGAAGCGAGGACACGGACT +
Preference number: 5 (lower is better)
Translates to: PTSDAVARIPCPLQESAADREVG*EARTRT
Trigger: AGTCCGTGTCCTCGCTTCCAAGCCCACCTCTCTATC...CGCCGCAGACTCCTGCAGGGGACATGGAATCCGGGCCACAGCATCACTTGTAGG
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000110529.6
CDS-3UTR CAA 90 bp CTGCCCTCTCCCTGCACTGAGTCCCGTGCAACAGGCTTTGAACAGCACTGCCCCAACCGGGGCCTCTCTTaGGGGTCTTTGTGCCAGCAA +
Preference number: 5 (lower is better)
Translates to: LPSPCTESRATGFEQHCPNRGLS*GSLCQQ
Trigger: TTGCTGGCACAAAGACCCCAAAGAGAGGCCCCGGTT...GGGGCAGTGCTGTTCAAAGCCTGTTGCACGGGACTCAGTGCAGGGAGAGGGCAG
61% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 1 transcripts:
ENSMUST00000031653.12
CDS CCA 90 bp GACTCCTTTCCCAGCTCAGATTCATCGTCCTGCACGGGCCTGATGTaGCCACAGCTGGAGAAGCAGAAGCTGGGCCTCGGCAGATCGGAA +
Preference number: 5 (lower is better)
Translates to: DSFPSSDSSSCTGLM*PQLEKQKLGLGRSE
Trigger: TTCCGATCTGCCGAGGCCCAGCTTCTGCTTCTCCAGCTGTGGCCACATCAGGCCCGTGCAGGACGATGAATCTGAGCTGGGAAAGGAGTC
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000031653.12
CDS CCA 90 bp GGCGGGCGGGGAGGAGTACAACACCACGGAGTTGTAGTCTGGGGGTaGAGAACAGCAGGACTCCTTTCCCAGCTCAGATTCATCGTCCTG +
Preference number: 5 (lower is better)
Translates to: GGRGGVQHHGVVVWG*RTAGLLSQLRFIVL
Trigger: CAGGACGATGAATCTGAGCTGGGAAAGGAGTCCTGCTGTTCTCCACCCCCAGACTACAACTCCGTGGTGTTGTACTCCTCCCCGCCCGCC
60% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000031653.12
CDS-3UTR CAA 90 bp TTCCTGCCACCGTGGGTCAAGGGTGCCCTGCCCTCTCCCTGCACTGAGTCCCGTGCCAAATGCAGAGGCTaGAACGACTTTCCCAAAAGC +
Preference number: 5 (lower is better)
Translates to: FLPPWVKGALPSPCTESRAKCRG*NDFPKS
Trigger: GCTTTTGGGAAAGTCGTTCAAGCCTCTGCATTTGGC...ACGGGACTCAGTGCAGGGAGAGGGCAGGGCACCCTTGACCCACGGTGGCAGGAA
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000031653.12
CDS CCA 90 bp GGTCAAGGTGCTGCAGAATTGCCTGTTATCCCTCCCACAGGCCGATaGGGGAGTGATGCTCAGCCTTTTGTCCTCCTGGCTCACGGTCGT +
Preference number: 5 (lower is better)
Translates to: GQGAAELPVIPPTGR*GSDAQPFVLLAHGR
Trigger: ACGACCGTGAGCCAGGAGGACAAAAGGCTGAGCATCACTCCCCCATCGGCCTGTGGGAGGGATAACAGGCAATTCTGCAGCACCTTGACC
59% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000031653.12
ENSMUST00000110529.6
CDS-3UTR CAA 90 bp GTGCACCAAGAGCCACAGTGGGCTGCAGGCTGTCTCAGTGGGGATTGCACTGGGCTGTGGAACACATTGTaGTGGGAATGGCTCCGGTCA +
Preference number: 5 (lower is better)
Translates to: VHQEPQWAAGCLSGDCTGLWNTL*WEWLRS
Trigger: TGACCGGAGCCATTCCCACAACAATGTGTTCCACAG...CCCAGTGCAATCCCCACTGAGACAGCCTGCAGCCCACTGTGGCTCTTGGTGCAC
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000031653.12
CDS-3UTR CAA 90 bp AGTGGCATAGCGGAGCCCCCTCCTGCACGGGCTCCACAGGACGGACGCATCCCATCTAGAGACACGTTCTaGATGACAAGGTTCAGAGTG +
Preference number: 5 (lower is better)
Translates to: SGIAEPPPARAPQDGRIPSRDTF*MTRFRV
Trigger: CACTCTGAACCTTGTCATCAAGAACGTGTCTCTAGA...TGGGATGCGTCCGTCCTGTGGAGCCCGTGCAGGAGGGGGCTCCGCTATGCCACT
59% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000031653.12
CDS-3UTR CAA 90 bp TTCCTGCCACCGTGGGTCAAGGGTGCCCTGCCCTCTCCCTGCACTGAGTCCCGTAAGGCTGCGTCCTTGTaGAGACAGAATAAGTCACGT +
Preference number: 5 (lower is better)
Translates to: FLPPWVKGALPSPCTESRKAASL*RQNKSR
Trigger: ACGTGACTTATTCTGTCTCAACAAGGACGCAGCCTT...ACGGGACTCAGTGCAGGGAGAGGGCAGGGCACCCTTGACCCACGGTGGCAGGAA
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000031653.12
CDS-3UTR CAA 90 bp GCTGGGACAACCACTCTGCCTCTCTGGGTCTTGGTCCAACCAGCCCGATTTGGGATCTTCATGGAGGCCTaGGGCTTGGTCTCAGTCCAG +
Preference number: 5 (lower is better)
Translates to: AGTTTLPLWVLVQPARFGIFMEA*GLVSVQ
Trigger: CTGGACTGAGACCAAGCCCAAGGCCTCCATGAAGAT...CCCAAATCGGGCTGGTTGGACCAAGACCCAGAGAGGCAGAGTGGTTGTCCCAGC
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000031653.12
CDS-3UTR CAA 90 bp GTTCCCAGGCTCGAGGGCTGCCATGCTGCCACCGCCACAACACAGAACTGCCCAGTCATGTGCACAAGTTaGGGTATGTCAGTGTGCATC +
Preference number: 5 (lower is better)
Translates to: VPRLEGCHAATATTQNCPVMCTS*GMSVCI
Trigger: GATGCACACTGACATACCCAAACTTGTGCACATGAC...TGGGCAGTTCTGTGTTGTGGCGGTGGCAGCATGGCAGCCCTCGAGCCTGGGAAC
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000110529.6
CDS-3UTR CAA 90 bp GTTCCCAGGCTCGAGGGCTGCCATGCTGCCACCGCCACAACACAGAACTGCCCATTTGGACATCTAGGATaGTATTGGTCTGCCGATGGG +
Preference number: 5 (lower is better)
Translates to: VPRLEGCHAATATTQNCPFGHLG*YWSADG
Trigger: CCCATCGGCAGACCAATACAATCCTAGATGTCCAAA...TGGGCAGTTCTGTGTTGTGGCGGTGGCAGCATGGCAGCCCTCGAGCCTGGGAAC
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000110529.6
CDS-3UTR CAA 90 bp CTGCCCTCTCCCTGCACTGAGTCCCGTGCAACAGGCTTTGAACAGCACTGCCCCTCTGCAAAGCCGTCCTaGAAAAGGTCCTCAGAGAAG +
Preference number: 5 (lower is better)
Translates to: LPSPCTESRATGFEQHCPSAKPS*KRSSEK
Trigger: CTTCTCTGAGGACCTTTTCAAGGACGGCTTTGCAGA...GGGGCAGTGCTGTTCAAAGCCTGTTGCACGGGACTCAGTGCAGGGAGAGGGCAG
58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000031653.12
CDS-3UTR CAA 90 bp CAAGAGCCACAGTGGGCTGCAGGCTGTCTCAGTGGGGATTGCACTGGGCCTCCAGTCATGTGCACAAGTTaGGGTATGTCAGTGTGCATC +
Preference number: 5 (lower is better)
Translates to: QEPQWAAGCLSGDCTGPPVMCTS*GMSVCI
Trigger: GATGCACACTGACATACCCAAACTTGTGCACATGAC...TGGAGGCCCAGTGCAATCCCCACTGAGACAGCCTGCAGCCCACTGTGGCTCTTG
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000031653.12
CDS-3UTR CAA 90 bp CAAGAGCCACAGTGGGCTGCAGGCTGTCTCAGTGGGGATTGCACTGGGCCTCCATTTGGACATCTAGGATaGTATTGGTCTGCCGATGGG +
Preference number: 5 (lower is better)
Translates to: QEPQWAAGCLSGDCTGPPFGHLG*YWSADG
Trigger: CCCATCGGCAGACCAATACAATCCTAGATGTCCAAA...TGGAGGCCCAGTGCAATCCCCACTGAGACAGCCTGCAGCCCACTGTGGCTCTTG
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000031653.12
CDS-3UTR CAA 90 bp GTGCACCAAGAGCCACAGTGGGCTGCAGGCTGTCTCAGTGGGGATTGCACTGGGCGGCTCTCCACATTGTaGATCTTAAGAACACTGTGG +
Preference number: 5 (lower is better)
Translates to: VHQEPQWAAGCLSGDCTGRLSTL*ILRTLW
Trigger: CCACAGTGTTCTTAAGATCAACAATGTGGAGAGCCG...CCCAGTGCAATCCCCACTGAGACAGCCTGCAGCCCACTGTGGCTCTTGGTGCAC
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000031653.12
CDS-3UTR CAA 90 bp CCTACAAGTGATGCTGTGGCCCGGATTCCATGTCCCCTGCAGGAGTCTGCGGCGTGGTGCATGGTTCTGTaGTTAACTGTCCGTAGCAGA +
Preference number: 5 (lower is better)
Translates to: PTSDAVARIPCPLQESAAWCMVL*LTVRSR
Trigger: TCTGCTACGGACAGTTAACAACAGAACCATGCACCA...CGCCGCAGACTCCTGCAGGGGACATGGAATCCGGGCCACAGCATCACTTGTAGG
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000110529.6
CDS-3UTR CAA 90 bp GATGGGGTACACAGGGGAGCAGGTACCCATGATGCTGGCCCGGTCAGAGAATTATCGGTCATCAGAGCTTaGTACTCACTGGCTGTGGCC +
Preference number: 5 (lower is better)
Translates to: DGVHRGAGTHDAGPVRELSVIRA*YSLAVA
Trigger: GGCCACAGCCAGTGAGTACAAAGCTCTGATGACCGA...TAATTCTCTGACCGGGCCAGCATCATGGGTACCTGCTCCCCTGTGTACCCCATC
57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000031653.12
CDS GCA 90 bp GGGGAAGGCCTTCACTTTCATGGACAGCCGATAGGACCGTCTTCCTaGTGTGGTTTCCTGCACCGGCTGCTTCCGATGTTTCACACTGAT +
Preference number: 5 (lower is better)
Translates to: GEGLHFHGQPIGPSS*CGFLHRLLPMFHTD
Trigger: ATCAGTGTGAAACATCGGAAGCAGCCGGTGCAGGAAACCACAGCAGGAAGACGGTCCTATCGGCTGTCCATGAAAGTGAAGGCCTTCCCC
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000031653.12
ENSMUST00000110529.6
CDS GCA 90 bp CGAGCGATTTGCCTAGTTTCAGTCTCTCCCGTGCAAACTCCCACTTaGTGGCATCATAGGGCAGCCGTTCACACTGCTCATCCAGGGGAA +
Preference number: 5 (lower is better)
Translates to: RAICLVSVSPVQTPT*WHHRAAVHTAHPGE
Trigger: TTCCCCTGGATGAGCAGTGTGAACGGCTGCCCTATGATGCCAGCAAGTGGGAGTTTGCACGGGAGAGACTGAAACTAGGCAAATCGCTCG
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000031653.12
CDS CCA 90 bp CACGGTGCAAGTGAGGACTTGTCTGCTGCCCAGCGGATAGAGAGGTaGGCTTGGAAGCGAGGACACGGACTTTTCGTAGATCTGAGGTTT +
Preference number: 5 (lower is better)
Translates to: HGASEDLSAAQRIER*AWKRGHGLFVDLRF
Trigger: AAACCTCAGATCTACGAAAAGTCCGTGTCCTCGCTTCCAAGCCCACCTCTCTATCCGCTGGGCAGCAGACAAGTCCTCACTTGCACCGTG
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000031653.12
ENSMUST00000110529.6
CDS CCA 90 bp TTTGGAGTGATTGTGGTGACAGGGGTGCCAGAGCCACGTGATTGTTaGCCGAGGGATGCCATACACGGTGCAAGTGAGGACTTGTCTGCT +
Preference number: 5 (lower is better)
Translates to: FGVIVVTGVPEPRDC*PRDAIHGASEDLSA
Trigger: AGCAGACAAGTCCTCACTTGCACCGTGTATGGCATCCCTCGGCCAACAATCACGTGGCTCTGGCACCCCTGTCACCACAATCACTCCAAA
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000031653.12
ENSMUST00000110529.6
CDS CCA 90 bp GCAAGTGAGGACTTGTCTGCTGCCCAGCGGATAGAGAGGTGGGCTTaGAAGCGAGGACACGGACTTTTCGTAGATCTGAGGTTTCACGTT +
Preference number: 5 (lower is better)
Translates to: ASEDLSAAQRIERWA*KRGHGLFVDLRFHV
Trigger: AACGTGAAACCTCAGATCTACGAAAAGTCCGTGTCCTCGCTTCCAAGCCCACCTCTCTATCCGCTGGGCAGCAGACAAGTCCTCACTTGC
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000031653.12
ENSMUST00000110529.6
CDS-3UTR CAA 90 bp GATGGGGTACACAGGGGAGCAGGTACCCATGATGCTGGCCCGGTCAGAGAATTACTCTCTTTGGGGTCTTaGTGCCAGCAATCCAACATG +
Preference number: 5 (lower is better)
Translates to: DGVHRGAGTHDAGPVRELLSLGS*CQQSNM
Trigger: CATGTTGGATTGCTGGCACAAAGACCCCAAAGAGAG...TAATTCTCTGACCGGGCCAGCATCATGGGTACCTGCTCCCCTGTGTACCCCATC
54% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 1 transcripts:
ENSMUST00000031653.12
CDS TCA 90 bp TGGTCTGCCGATGGGTCAGATAGTTTGTCTGGTACAGGTGCCCGTTaGCGGTGGCTTCGCAGTTCAGCAGTCCTATCTCTTTGTACGTTG +
Preference number: 5 (lower is better)
Translates to: WSADGSDSLSGTGAR*RWLRSSAVLSLCTL
Trigger: CAACGTACAAAGAGATAGGACTGCTGAACTGCGAAGCCACCGTCAACGGGCACCTGTACCAGACAAACTATCTGACCCATCGGCAGACCA
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000031653.12
ENSMUST00000110529.6
CDS CCA 90 bp GACCATGAGTGGGCTGCCTCCCCTCTGCACTTGAGAAAGAGAGTCTaGCCTGCTTGCATGACATGCTGGGTGCCTTTTAAACTCAGTTCA +
Preference number: 5 (lower is better)
Translates to: DHEWAASPLHLRKRV*PACMTCWVPFKLSS
Trigger: TGAACTGAGTTTAAAAGGCACCCAGCATGTCATGCAAGCAGGCCAGACTCTCTTTCTCAAGTGCAGAGGGGAGGCAGCCCACTCATGGTC
53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000031653.12
ENSMUST00000110529.6
CDS-3UTR CAA 90 bp GATGGGGTACACAGGGGAGCAGGTACCCATGATGCTGGCCCGGTCAGAGAATTATGGTGCATGGTTCTGTaGTTAACTGTCCGTAGCAGA +
Preference number: 5 (lower is better)
Translates to: DGVHRGAGTHDAGPVRELWCMVL*LTVRSR
Trigger: TCTGCTACGGACAGTTAACAACAGAACCATGCACCA...TAATTCTCTGACCGGGCCAGCATCATGGGTACCTGCTCCCCTGTGTACCCCATC
53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000031653.12
CDS-3UTR CAA 90 bp GATGGGGTACACAGGGGAGCAGGTACCCATGATGCTGGCCCGGTCAGAGAATTAATGTGGGTCAAGATCTaGAGTTCGGTCATCAGAGCT +
Preference number: 5 (lower is better)
Translates to: DGVHRGAGTHDAGPVRELMWVKI*SSVIRA
Trigger: AGCTCTGATGACCGAACTCAAGATCTTGACCCACAT...TAATTCTCTGACCGGGCCAGCATCATGGGTACCTGCTCCCCTGTGTACCCCATC
53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000031653.12
CDS-3UTR CAA 90 bp GGGAGCTTGCATAAATTACACATCACCTGCTGTGCCAAGGAGCATAAAGTGCTTCATCAGAGGCCCTCCTaGCTTCGTGCAGGCTCCCAG +
Preference number: 5 (lower is better)
Translates to: GSLHKLHITCCAKEHKVLHQRPS*LRAGSQ
Trigger: CTGGGAGCCTGCACGAAGCAAGGAGGGCCTCTGATG...AAGCACTTTATGCTCCTTGGCACAGCAGGTGATGTGTAATTTATGCAAGCTCCC
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000031653.12
CDS GCA 90 bp GACGTCACCCGGCAGGGGATGATGAGCTGTCTTCCTTCCGTCATGTaGACAAGTTTGGGTATGTCAGTGTGCATCTCTATGAAAGGACTC +
Preference number: 5 (lower is better)
Translates to: DVTRQGMMSCLPSVM*TSLGMSVCISMKGL
Trigger: GAGTCCTTTCATAGAGATGCACACTGACATACCCAAACTTGTGCACATGACGGAAGGAAGACAGCTCATCATCCCCTGCCGGGTGACGTC
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000031653.12
ENSMUST00000110529.6
CDS-3UTR CAA 90 bp GATGGGGTACACAGGGGAGCAGGTACCCATGATGCTGGCCCGGTCAGAGAATTAGCAATCCAACATGATTaGGTAGATTTCAGGTGTGGC +
Preference number: 5 (lower is better)
Translates to: DGVHRGAGTHDAGPVRELAIQHD*VDFRCG
Trigger: GCCACACCTGAAATCTACCAAATCATGTTGGATTGC...TAATTCTCTGACCGGGCCAGCATCATGGGTACCTGCTCCCCTGTGTACCCCATC
52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000031653.12
CDS-3UTR CAA 90 bp TATGACCCCAGGGTTGCTGGCCTGGTTTCCAGGTCTCTAATGATGTGGGATGTGGAGAAAATGGCCTTTTaGCCGCAGTGCTCACCTCTA +
Preference number: 5 (lower is better)
Translates to: YDPRVAGLVSRSLMMWDVEKMAF*PQCSPL
Trigger: TAGAGGTGAGCACTGCGGCAAAAAGGCCATTTTCTC...CACATCCCACATCATTAGAGACCTGGAAACCAGGCCAGCAACCCTGGGGTCATA
52% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 1 transcripts:
ENSMUST00000110529.6
CDS TCA 90 bp ACAGTCCGGCAGGTGGGTGATTTCTTAATGCCAAATGCAGAGGCTTaGACGACTTTCCCAAAAGCCCCTCTTCCGAGCGATTTGCCTAGT +
Preference number: 5 (lower is better)
Translates to: TVRQVGDFLMPNAEA*TTFPKAPLPSDLPS
Trigger: ACTAGGCAAATCGCTCGGAAGAGGGGCTTTTGGGAAAGTCGTTCAAGCCTCTGCATTTGGCATTAAGAAATCACCCACCTGCCGGACTGT
51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000031653.12
CDS TCA 90 bp GGCCCCCTCTTTCAACATCTTCACAGCCACAGTCCGGCAGGTGGGTaGTTTCTTAATGCCAAATGCAGAGGCTTGAACGACTTTCCCAAA +
Preference number: 5 (lower is better)
Translates to: GPLFQHLHSHSPAGG*FLNAKCRGLNDFPK
Trigger: TTTGGGAAAGTCGTTCAAGCCTCTGCATTTGGCATTAAGAAATCACCCACCTGCCGGACTGTGGCTGTGAAGATGTTGAAAGAGGGGGCC
51% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000031653.12
CDS CCA 90 bp AGCCCCTTGTCTCGGCTCTCCACATTGTTGATCTTAAGAACACTGTaGAACACATTGTTGTGGGAATGGCTCCGGTCAATCCGCTGCCTT +
Preference number: 5 (lower is better)
Translates to: SPLSRLSTLLILRTL*NTLLWEWLRSIRCL
Trigger: AAGGCAGCGGATTGACCGGAGCCATTCCCACAACAATGTGTTCCACAGTGTTCTTAAGATCAACAATGTGGAGAGCCGAGACAAGGGGCT
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000031653.12
ENSMUST00000110529.6
CDS CCA 90 bp GAACTTCTGTCTTCCGAAGGATGTCTTCCCCTGTGTATATGTTCCTaGCTCTGCACGCATAGGTGCCCGAGTCTTCTAGAGACACGTTCT +
Preference number: 5 (lower is better)
Translates to: ELLSSEGCLPLCICS*LCTHRCPSLLETRS
Trigger: AGAACGTGTCTCTAGAAGACTCGGGCACCTATGCGTGCAGAGCCAGGAACATATACACAGGGGAAGACATCCTTCGGAAGACAGAAGTTC
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000031653.12
ENSMUST00000110529.6
CDS-3UTR CAA 90 bp CCTAGTCACACACTGGCGATCTCACACACTGGGAGAAATGTCTGTTCTTCCTCAACATGCACGGAGGTGTaGAAAGACTGGAACGAGGAC +
Preference number: 5 (lower is better)
Translates to: PSHTLAISHTGRNVCSSSTCTEV*KDWNED
Trigger: GTCCTCGTTCCAGTCTTTCAACACCTCCGTGCATGT...TGAGGAAGAACAGACATTTCTCCCAGTGTGTGAGATCGCCAGTGTGTGACTAGG
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000031653.12
CDS-3UTR CAA 90 bp TTTTGGTCATTATTGCTGGCTTCCCCCAGCCATGTAGTTCACATACAAAGATCAGAGAGTCTGGCCTGCTaGCATGACATGCTGGGTGCC +
Preference number: 5 (lower is better)
Translates to: FWSLLLASPSHVVHIQRSESLAC*HDMLGA
Trigger: GGCACCCAGCATGTCATGCAAGCAGGCCAGACTCTC...TGATCTTTGTATGTGAACTACATGGCTGGGGGAAGCCAGCAATAATGACCAAAA
50% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000110529.6
CDS-3UTR CAA 90 bp TCACACACTGGGAGAAATGTCTGTTCTTCCTCAGTGCCATCTACTTGGGCCTTGTCCAGGCTCTCTTTCTaGAGCTCCATATGCAAGGCT +
Preference number: 5 (lower is better)
Translates to: SHTGRNVCSSSVPSTWALSRLSF*SSICKA
Trigger: AGCCTTGCATATGGAGCTCAAGAAAGAGAGCCTGGA...CAAGGCCCAAGTAGATGGCACTGAGGAAGAACAGACATTTCTCCCAGTGTGTGA
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000031653.12
CDS GCA 90 bp GGCTGCTTCCGATGTTTCACACTGATGAATCCTTTTTCATACACATaGACGGAGGTGTTGAAAGACTGGAACGAGGACCCACTCTTCACG +
Preference number: 5 (lower is better)
Translates to: GCFRCFTLMNPFSYT*TEVLKDWNEDPLFT
Trigger: CGTGAAGAGTGGGTCCTCGTTCCAGTCTTTCAACACCTCCGTGCATGTGTATGAAAAAGGATTCATCAGTGTGAAACATCGGAAGCAGCC
49% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000031653.12
ENSMUST00000110529.6
CDS-3UTR CAA 90 bp GCCATCGTCATTAGACCCCAGACAAGGTATGAAACAGATGAAAATAAGATGGTTGAGAGTCTGGCCTGCTaGCATGACATGCTGGGTGCC +
Preference number: 5 (lower is better)
Translates to: AIVIRPQTRYETDENKMVESLAC*HDMLGA
Trigger: GGCACCCAGCATGTCATGCAAGCAGGCCAGACTCTC...AACCATCTTATTTTCATCTGTTTCATACCTTGTCTGGGGTCTAATGACGATGGC
49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000031653.12
CDS CCA 90 bp GAATTTATTGACCACACAGGACAGTTTCAGGTCCTCTCCTTCGGCTaGCATCTTTTCCAAGGAAACGTGAAAGCCATTCGGCACATCTGT +
Preference number: 5 (lower is better)
Translates to: EFIDHTGQFQVLSFG*HLFQGNVKAIRHIC
Trigger: ACAGATGTGCCGAATGGCTTTCACGTTTCCTTGGAAAAGATGCCAGCCGAAGGAGAGGACCTGAAACTGTCCTGTGTGGTCAATAAATTC
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000031653.12
ENSMUST00000110529.6
CDS-3UTR CAA 90 bp GCCATCGTCATTAGACCCCAGACAAGGTATGAAACAGATGAAAATAAGATGGTTGGTGCAAGTGAGGACTaGTCTGCTGCCCAGCGGATA +
Preference number: 5 (lower is better)
Translates to: AIVIRPQTRYETDENKMVGASED*SAAQRI
Trigger: TATCCGCTGGGCAGCAGACAAGTCCTCACTTGCACC...AACCATCTTATTTTCATCTGTTTCATACCTTGTCTGGGGTCTAATGACGATGGC
48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000031653.12
CDS-3UTR CAA 90 bp TCACACACTGGGAGAAATGTCTGTTCTTCCTCAGTGCCATCTACTTGGGCCTTGATTCTGTTTCCTAAGTaGCTGCTGGGATCCAGGATA +
Preference number: 5 (lower is better)
Translates to: SHTGRNVCSSSVPSTWALILFPK*LLGSRI
Trigger: TATCCTGGATCCCAGCAGCAACTTAGGAAACAGAAT...CAAGGCCCAAGTAGATGGCACTGAGGAAGAACAGACATTTCTCCCAGTGTGTGA
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000031653.12
CDS-3UTR CAA 90 bp CATCTAATCACAGCAGGAAACACACGTGTAATTACCTGGGTGGACAGAGGAGGGTCTAGAGACACGTTCTaGATGACAAGGTTCAGAGTG +
Preference number: 5 (lower is better)
Translates to: HLITAGNTRVITWVDRGGSRDTF*MTRFRV
Trigger: CACTCTGAACCTTGTCATCAAGAACGTGTCTCTAGA...CCCTCCTCTGTCCACCCAGGTAATTACACGTGTGTTTCCTGCTGTGATTAGATG
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000110529.6
CDS-3UTR CAA 90 bp GGGAGCTTGCATAAATTACACATCACCTGCTGTGCCAAGGAGCATAAAGTGCTTTGCAAGGCTGCGTCCTaGTTGAGACAGAATAAGTCA +
Preference number: 5 (lower is better)
Translates to: GSLHKLHITCCAKEHKVLCKAAS*LRQNKS
Trigger: TGACTTATTCTGTCTCAACAAGGACGCAGCCTTGCA...AAGCACTTTATGCTCCTTGGCACAGCAGGTGATGTGTAATTTATGCAAGCTCCC
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000031653.12
CDS TCA 90 bp AATGTGCTAACCGTCTTATTTGTTCCTTCTATGACCGTCATGCGCTaGGAGATGCTCTCAATTCTGTTTCCTAAGTTGCTGCTGGGATCC +
Preference number: 5 (lower is better)
Translates to: NVLTVLFVPSMTVMR*EMLSILFPKLLLGS
Trigger: GGATCCCAGCAGCAACTTAGGAAACAGAATTGAGAGCATCTCTCAGCGCATGACGGTCATAGAAGGAACAAATAAGACGGTTAGCACATT
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000031653.12
ENSMUST00000110529.6
CDS GCA 90 bp GGTGGCTTCGCAGTTCAGCAGTCCTATCTCTTTGTACGTTGCATTTaGTATTATAAAGCCTCTCCTACTGTCCCATGTTATTCTTTGCCC +
Preference number: 5 (lower is better)
Translates to: GGFAVQQSYLFVRCI*YYKASPTVPCYSLP
Trigger: GGGCAAAGAATAACATGGGACAGTAGGAGAGGCTTTATAATAGCAAATGCAACGTACAAAGAGATAGGACTGCTGAACTGCGAAGCCACC
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000031653.12
ENSMUST00000110529.6
CDS CCA 90 bp CTCTCCACATTGTTGATCTTAAGAACACTGTGGAACACATTGTTGTaGGAATGGCTCCGGTCAATCCGCTGCCTTATAGATGCTCTCTTA +
Preference number: 5 (lower is better)
Translates to: LSTLLILRTLWNTLL*EWLRSIRCLIDALL
Trigger: TAAGAGAGCATCTATAAGGCAGCGGATTGACCGGAGCCATTCCCACAACAATGTGTTCCACAGTGTTCTTAAGATCAACAATGTGGAGAG
46% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000031653.12
ENSMUST00000110529.6
CDS-3UTR CAA 90 bp CCTAGTCACACACTGGCGATCTCACACACTGGGAGAAATGTCTGTTCTTCCTCAAGCAGTCCTATCTCTTaGTACGTTGCATTTGCTATT +
Preference number: 5 (lower is better)
Translates to: PSHTLAISHTGRNVCSSSSSPIS*YVAFAI
Trigger: AATAGCAAATGCAACGTACAAAGAGATAGGACTGCT...TGAGGAAGAACAGACATTTCTCCCAGTGTGTGAGATCGCCAGTGTGTGACTAGG
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000031653.12
CDS-3UTR CAA 90 bp TTGAAATCACAGCCCGCAGAAAACTTTTCAATCTATAATGACTTGTGCATGCATGGTGCAAGTGAGGACTaGTCTGCTGCCCAGCGGATA +
Preference number: 5 (lower is better)
Translates to: LKSQPAENFSIYNDLCMHGASED*SAAQRI
Trigger: TATCCGCTGGGCAGCAGACAAGTCCTCACTTGCACC...ATGCATGCACAAGTCATTATAGATTGAAAAGTTTTCTGCGGGCTGTGATTTCAA
46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000110529.6
CDS-3UTR CAA 90 bp GTGATACCATTGATTAGTCTTTCCTCTGGGCTGACAACTTCCAGGCTGCTGATTATTCTGTTTCCTAAGTaGCTGCTGGGATCCAGGATA +
Preference number: 5 (lower is better)
Translates to: VIPLISLSSGLTTSRLLIILFPK*LLGSRI
Trigger: TATCCTGGATCCCAGCAGCAACTTAGGAAACAGAAT...AATCAGCAGCCTGGAAGTTGTCAGCCCAGAGGAAAGACTAATCAATGGTATCAC
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000110529.6
CDS CCA 90 bp ACATTGTTGATCTTAAGAACACTGTGGAACACATTGTTGTGGGAATaGCTCCGGTCAATCCGCTGCCTTATAGATGCTCTCTTAGTTGCT +
Preference number: 5 (lower is better)
Translates to: TLLILRTLWNTLLWE*LRSIRCLIDALLVA
Trigger: AGCAACTAAGAGAGCATCTATAAGGCAGCGGATTGACCGGAGCCATTCCCACAACAATGTGTTCCACAGTGTTCTTAAGATCAACAATGT
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000031653.12
ENSMUST00000110529.6
CDS-3UTR CAA 90 bp TTTTGGTCATTATTGCTGGCTTCCCCCAGCCATGTAGTTCACATACAAAGATCAGTAATTCCAGCTCATTaGCACCCTCGTATTGAGCTC +
Preference number: 5 (lower is better)
Translates to: FWSLLLASPSHVVHIQRSVIPAH*HPRIEL
Trigger: GAGCTCAATACGAGGGTGCAAATGAGCTGGAATTAC...TGATCTTTGTATGTGAACTACATGGCTGGGGGAAGCCAGCAATAATGACCAAAA
44% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000110529.6
CDS-3UTR CAA 90 bp TTTTGGTCATTATTGCTGGCTTCCCCCAGCCATGTAGTTCACATACAAAGATCACGGCTCTCCACATTGTaGATCTTAAGAACACTGTGG +
Preference number: 5 (lower is better)
Translates to: FWSLLLASPSHVVHIQRSRLSTL*ILRTLW
Trigger: CCACAGTGTTCTTAAGATCAACAATGTGGAGAGCCG...TGATCTTTGTATGTGAACTACATGGCTGGGGGAAGCCAGCAATAATGACCAAAA
44% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000110529.6
CDS-3UTR CAA 90 bp CTTCACACGTCACTAACTGGGGTTACATTCTTGTTAGTCAAAACAGCAACAACAGTAATTCCAGCTCATTaGCACCCTCGTATTGAGCTC +
Preference number: 5 (lower is better)
Translates to: LHTSLTGVTFLLVKTATTVIPAH*HPRIEL
Trigger: GAGCTCAATACGAGGGTGCAAATGAGCTGGAATTAC...TGTTGTTGCTGTTTTGACTAACAAGAATGTAACCCCAGTTAGTGACGTGTGAAG
43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000031653.12
CDS-3UTR CAA 90 bp TTGAAATCACAGCCCGCAGAAAACTTTTCAATCTATAATGACTTGTGCATGCATCTGTGGAACACATTGTaGTGGGAATGGCTCCGGTCA +
Preference number: 5 (lower is better)
Translates to: LKSQPAENFSIYNDLCMHLWNTL*WEWLRS
Trigger: TGACCGGAGCCATTCCCACAACAATGTGTTCCACAG...ATGCATGCACAAGTCATTATAGATTGAAAAGTTTTCTGCGGGCTGTGATTTCAA
43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000110529.6
CDS-3UTR CAA 90 bp ATGCAATACATTATAATATTAAAAATACCACACAGGAACGGCAGTACCCTCCAGACATGCACGGAGGTGTaGAAAGACTGGAACGAGGAC +
Preference number: 5 (lower is better)
Translates to: MQYIIILKIPHRNGSTLQTCTEV*KDWNED
Trigger: GTCCTCGTTCCAGTCTTTCAACACCTCCGTGCATGT...CTGGAGGGTACTGCCGTTCCTGTGTGGTATTTTTAATATTATAATGTATTGCAT
43% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000110529.6
CDS-3UTR CAA 90 bp ATGGAATTCTTAAAATTGTCTCTTGGGATGCACACCTTCCCCTACTCACAGGGACTCCTGCTTTTAAATTaGGAGATCCGAGAGAAAATG +
Preference number: 5 (lower is better)
Translates to: MEFLKLSLGMHTFPYSQGLLLLN*EIREKM
Trigger: CATTTTCTCTCGGATCTCCAAATTTAAAAGCAGGAG...TCCCTGTGAGTAGGGGAAGGTGTGCATCCCAAGAGACAATTTTAAGAATTCCAT
42% GC, longest homopolymer 4 nt, total homopolymer stretches 16 nt.
Matches the following 1 transcripts:
ENSMUST00000110529.6
CDS-3UTR CAA 90 bp GTGATACCATTGATTAGTCTTTCCTCTGGGCTGACAACTTCCAGGCTGCTGATTATGTTTGACATGACTTaGTGTGGTACAATCATTCCT +
Preference number: 5 (lower is better)
Translates to: VIPLISLSSGLTTSRLLIMFDMT*CGTIIP
Trigger: AGGAATGATTGTACCACACAAAGTCATGTCAAACAT...AATCAGCAGCCTGGAAGTTGTCAGCCCAGAGGAAAGACTAATCAATGGTATCAC
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000110529.6
CDS GCA 72 bp AGCTCCGTGGTGGCGGTGCAGTTGAGGACAAGAGTCTaGCCGTGGAGCAGTCTCACTGGGCTCGGCGGGCGT +
Preference number: 6 (lower is better)
Translates to: SSVVAVQLRTRV*PWSSLTGLGGR
Trigger: ACGCCCGCCGAGCCCAGTGAGACTGCTCCACGGGCAGACTCTTGTCCTCAACTGCACCGCCACCACGGAGCT
67% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000031653.12
ENSMUST00000110529.6
CDS CCA 72 bp GTGGTGGCGGTGCAGTTGAGGACAAGAGTCTGCCCGTaGAGCAGTCTCACTGGGCTCGGCGGGCGTATTTGG +
Preference number: 6 (lower is better)
Translates to: VVAVQLRTRVCP*SSLTGLGGRIW
Trigger: CCAAATACGCCCGCCGAGCCCAGTGAGACTGCTCCACGGGCAGACTCTTGTCCTCAACTGCACCGCCACCAC
64% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000031653.12
ENSMUST00000110529.6
CDS CAA 90 bp CAGCTCATTTGCACCCTCGTATTGAGCTCCGTGGTGGCGGTGCAGTaGAGGACAAGAGTCTGCCCGTGGAGCAGTCTCACTGGGCTCGGC +
Preference number: 6 (lower is better)
Translates to: QLICTLVLSSVVAVQ*RTRVCPWSSLTGLG
Trigger: GCCGAGCCCAGTGAGACTGCTCCACGGGCAGACTCTTGTCCTCAACTGCACCGCCACCACGGAGCTCAATACGAGGGTGCAAATGAGCTG
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000031653.12
ENSMUST00000110529.6
CDS CCA 72 bp TCCTCCTGGCTCACGGTCGTGGGCAGAGACCATGAGTaGGCTGCCTCCCCTCTGCACTTGAGAAAGAGAGTC +
Preference number: 6 (lower is better)
Translates to: SSWLTVVGRDHE*AASPLHLRKRV
Trigger: GACTCTCTTTCTCAAGTGCAGAGGGGAGGCAGCCCACTCATGGTCTCTGCCCACGACCGTGAGCCAGGAGGA
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000031653.12
ENSMUST00000110529.6
CDS CCA 72 bp GGGCGGGGAGGAGTACAACACCACGGAGTTGTAGTCTaGGGGTGGAGAACAGCAGGACTCCTTTCCCAGCTC +
Preference number: 6 (lower is better)
Translates to: GRGGVQHHGVVV*GWRTAGLLSQL
Trigger: GAGCTGGGAAAGGAGTCCTGCTGTTCTCCACCCCCAGACTACAACTCCGTGGTGTTGTACTCCTCCCCGCCC
61% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000031653.12
CDS CAA 72 bp TGGCCGAGGGATGCCATACACGGTGCAAGTGAGGACTaGTCTGCTGCCCAGCGGATAGAGAGGTGGGCTTGG +
Preference number: 6 (lower is better)
Translates to: WPRDAIHGASED*SAAQRIERWAW
Trigger: CCAAGCCCACCTCTCTATCCGCTGGGCAGCAGACAAGTCCTCACTTGCACCGTGTATGGCATCCCTCGGCCA
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000031653.12
ENSMUST00000110529.6
CDS TCA 72 bp ATTGCCTGTTATCCCTCCCACAGGCCGATGGGGGAGTaGTGCTCAGCCTTTTGTCCTCCTGGCTCACGGTCG +
Preference number: 6 (lower is better)
Translates to: IACYPSHRPMGE*CSAFCPPGSRS
Trigger: CGACCGTGAGCCAGGAGGACAAAAGGCTGAGCATCACTCCCCCATCGGCCTGTGGGAGGGATAACAGGCAAT
60% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000031653.12
ENSMUST00000110529.6
CDS TCA 72 bp GCTCCAGGTTTGACTTGTCTGAGGTTCCTTGCACGGTaGGGTAGGCTGCGCTTTCCACGGCCCCCTTCTGGT +
Preference number: 6 (lower is better)
Translates to: APGLTCLRFLAR*GRLRFPRPPSG
Trigger: ACCAGAAGGGGGCCGTGGAAAGCGCAGCCTACCTCACCGTGCAAGGAACCTCAGACAAGTCAAACCTGGAGC
60% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000031653.12
CDS GCA 72 bp CAGCAGGACTCCTTTCCCAGCTCAGATTCATCGTCCTaGACGGGCCTGATGTGGCCACAGCTGGAGAAGCAG +
Preference number: 6 (lower is better)
Translates to: QQDSFPSSDSSS*TGLMWPQLEKQ
Trigger: CTGCTTCTCCAGCTGTGGCCACATCAGGCCCGTGCAGGACGATGAATCTGAGCTGGGAAAGGAGTCCTGCTG
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000031653.12
CDS CAA 72 bp TGCACCCTCGTATTGAGCTCCGTGGTGGCGGTGCAGTaGAGGACAAGAGTCTGCCCGTGGAGCAGTCTCACT +
Preference number: 6 (lower is better)
Translates to: CTLVLSSVVAVQ*RTRVCPWSSLT
Trigger: AGTGAGACTGCTCCACGGGCAGACTCTTGTCCTCAACTGCACCGCCACCACGGAGCTCAATACGAGGGTGCA
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000031653.12
ENSMUST00000110529.6
CDS CAA 90 bp CGTGATTGTTGGCCGAGGGATGCCATACACGGTGCAAGTGAGGACTaGTCTGCTGCCCAGCGGATAGAGAGGTGGGCTTGGAAGCGAGGA +
Preference number: 6 (lower is better)
Translates to: RDCWPRDAIHGASED*SAAQRIERWAWKRG
Trigger: TCCTCGCTTCCAAGCCCACCTCTCTATCCGCTGGGCAGCAGACAAGTCCTCACTTGCACCGTGTATGGCATCCCTCGGCCAACAATCACG
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000031653.12
ENSMUST00000110529.6
CDS TCA 72 bp TGGAGTGATTGTGGTGACAGGGGTGCCAGAGCCACGTaGTTGTTGGCCGAGGGATGCCATACACGGTGCAAG +
Preference number: 6 (lower is better)
Translates to: WSDCGDRGARAT*LLAEGCHTRCK
Trigger: CTTGCACCGTGTATGGCATCCCTCGGCCAACAATCACGTGGCTCTGGCACCCCTGTCACCACAATCACTCCA
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000031653.12
ENSMUST00000110529.6
CDS CCA 72 bp CCGTGGAGCAGTCTCACTGGGCTCGGCGGGCGTATTTaGACATCTAGGATTGTATTGGTCTGCCGATGGGTC +
Preference number: 6 (lower is better)
Translates to: PWSSLTGLGGRI*TSRIVLVCRWV
Trigger: GACCCATCGGCAGACCAATACAATCCTAGATGTCCAAATACGCCCGCCGAGCCCAGTGAGACTGCTCCACGG
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000031653.12
ENSMUST00000110529.6
CDS CCA 72 bp ATTGTGGTGACAGGGGTGCCAGAGCCACGTGATTGTTaGCCGAGGGATGCCATACACGGTGCAAGTGAGGAC +
Preference number: 6 (lower is better)
Translates to: IVVTGVPEPRDC*PRDAIHGASED
Trigger: GTCCTCACTTGCACCGTGTATGGCATCCCTCGGCCAACAATCACGTGGCTCTGGCACCCCTGTCACCACAAT
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000031653.12
ENSMUST00000110529.6
CDS CCA 72 bp GACTTGTCTGCTGCCCAGCGGATAGAGAGGTGGGCTTaGAAGCGAGGACACGGACTTTTCGTAGATCTGAGG +
Preference number: 6 (lower is better)
Translates to: DLSAAQRIERWA*KRGHGLFVDLR
Trigger: CCTCAGATCTACGAAAAGTCCGTGTCCTCGCTTCCAAGCCCACCTCTCTATCCGCTGGGCAGCAGACAAGTC
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000031653.12
ENSMUST00000110529.6
CDS CCA 72 bp CTTTCATGGACAGCCGATAGGACCGTCTTCCTGCTGTaGTTTCCTGCACCGGCTGCTTCCGATGTTTCACAC +
Preference number: 6 (lower is better)
Translates to: LSWTADRTVFLL*FPAPAASDVSH
Trigger: GTGTGAAACATCGGAAGCAGCCGGTGCAGGAAACCACAGCAGGAAGACGGTCCTATCGGCTGTCCATGAAAG
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000031653.12
ENSMUST00000110529.6
CDS CCA 72 bp AGTGAGGACTTGTCTGCTGCCCAGCGGATAGAGAGGTaGGCTTGGAAGCGAGGACACGGACTTTTCGTAGAT +
Preference number: 6 (lower is better)
Translates to: SEDLSAAQRIER*AWKRGHGLFVD
Trigger: ATCTACGAAAAGTCCGTGTCCTCGCTTCCAAGCCCACCTCTCTATCCGCTGGGCAGCAGACAAGTCCTCACT
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000031653.12
ENSMUST00000110529.6
CDS TCA 72 bp CAGGCACTTTTAACTTCGACCCTGAGCCATATCCTGTaGGAAGCAGACACCCGAGCAGCGCGTAAGGCAAGA +
Preference number: 6 (lower is better)
Translates to: QALLTSTLSHIL*EADTRAARKAR
Trigger: TCTTGCCTTACGCGCTGCTCGGGTGTCTGCTTCTCACAGGATATGGCTCAGGGTCGAAGTTAAAAGTGCCTG
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000031653.12
ENSMUST00000110529.6
CDS GCA 72 bp CTTCACTTTCATGGACAGCCGATAGGACCGTCTTCCTaGTGTGGTTTCCTGCACCGGCTGCTTCCGATGTTT +
Preference number: 6 (lower is better)
Translates to: LHFHGQPIGPSS*CGFLHRLLPMF
Trigger: AAACATCGGAAGCAGCCGGTGCAGGAAACCACAGCAGGAAGACGGTCCTATCGGCTGTCCATGAAAGTGAAG
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000031653.12
ENSMUST00000110529.6
CDS GCA 72 bp TGCCTAGTTTCAGTCTCTCCCGTGCAAACTCCCACTTaGTGGCATCATAGGGCAGCCGTTCACACTGCTCAT +
Preference number: 6 (lower is better)
Translates to: CLVSVSPVQTPT*WHHRAAVHTAH
Trigger: ATGAGCAGTGTGAACGGCTGCCCTATGATGCCAGCAAGTGGGAGTTTGCACGGGAGAGACTGAAACTAGGCA
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000031653.12
CDS CAA 90 bp GGAGCAGTCTCACTGGGCTCGGCGGGCGTATTTGGACATCTAGGATaGTATTGGTCTGCCGATGGGTCAGATAGTTTGTCTGGTACAGGT +
Preference number: 6 (lower is better)
Translates to: GAVSLGSAGVFGHLG*YWSADGSDSLSGTG
Trigger: ACCTGTACCAGACAAACTATCTGACCCATCGGCAGACCAATACAATCCTAGATGTCCAAATACGCCCGCCGAGCCCAGTGAGACTGCTCC
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000031653.12
ENSMUST00000110529.6
CDS TCA 72 bp GATGGGTCAGATAGTTTGTCTGGTACAGGTGCCCGTTaGCGGTGGCTTCGCAGTTCAGCAGTCCTATCTCTT +
Preference number: 6 (lower is better)
Translates to: DGSDSLSGTGAR*RWLRSSAVLSL
Trigger: AAGAGATAGGACTGCTGAACTGCGAAGCCACCGTCAACGGGCACCTGTACCAGACAAACTATCTGACCCATC
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000031653.12
ENSMUST00000110529.6
CDS CAA 90 bp TCCTTGCTTTTACTCGCTATTCTCAAGTCTATCTTCATGGAGGCCTaGGGCTTGGTCTCAGTCCAGGTGAACCGCTTCAGCAAGGGGGAG +
Preference number: 6 (lower is better)
Translates to: SLLLLAILKSIFMEA*GLVSVQVNRFSKGE
Trigger: CTCCCCCTTGCTGAAGCGGTTCACCTGGACTGAGACCAAGCCCAAGGCCTCCATGAAGATAGACTTGAGAATAGCGAGTAAAAGCAAGGA
52% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000031653.12
CDS CAA 90 bp CGGCAGGGGATGATGAGCTGTCTTCCTTCCGTCATGTGCACAAGTTaGGGTATGTCAGTGTGCATCTCTATGAAAGGACTCCCTGCATCA +
Preference number: 6 (lower is better)
Translates to: RQGMMSCLPSVMCTS*GMSVCISMKGLPAS
Trigger: TGATGCAGGGAGTCCTTTCATAGAGATGCACACTGACATACCCAAACTTGTGCACATGACGGAAGGAAGACAGCTCATCATCCCCTGCCG
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000031653.12
ENSMUST00000110529.6
CDS GCA 72 bp CGGCAGGGGATGATGAGCTGTCTTCCTTCCGTCATGTaGACAAGTTTGGGTATGTCAGTGTGCATCTCTATG +
Preference number: 6 (lower is better)
Translates to: RQGMMSCLPSVM*TSLGMSVCISM
Trigger: CATAGAGATGCACACTGACATACCCAAACTTGTGCACATGACGGAAGGAAGACAGCTCATCATCCCCTGCCG
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000031653.12
ENSMUST00000110529.6
CDS CCA 72 bp GGCTCGGCGGGCGTATTTGGACATCTAGGATTGTATTaGTCTGCCGATGGGTCAGATAGTTTGTCTGGTACA +
Preference number: 6 (lower is better)
Translates to: GSAGVFGHLGLY*SADGSDSLSGT
Trigger: TGTACCAGACAAACTATCTGACCCATCGGCAGACCAATACAATCCTAGATGTCCAAATACGCCCGCCGAGCC
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000031653.12
ENSMUST00000110529.6
CDS CAA 72 bp TCACTGGGCTCGGCGGGCGTATTTGGACATCTAGGATaGTATTGGTCTGCCGATGGGTCAGATAGTTTGTCT +
Preference number: 6 (lower is better)
Translates to: SLGSAGVFGHLG*YWSADGSDSLS
Trigger: AGACAAACTATCTGACCCATCGGCAGACCAATACAATCCTAGATGTCCAAATACGCCCGCCGAGCCCAGTGA
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000031653.12
ENSMUST00000110529.6
CDS TCA 72 bp CAGGTGGGTGATTTCTTAATGCCAAATGCAGAGGCTTaGACGACTTTCCCAAAAGCCCCTCTTCCGAGCGAT +
Preference number: 6 (lower is better)
Translates to: QVGDFLMPNAEA*TTFPKAPLPSD
Trigger: ATCGCTCGGAAGAGGGGCTTTTGGGAAAGTCGTTCAAGCCTCTGCATTTGGCATTAAGAAATCACCCACCTG
50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000031653.12
CDS TCA 72 bp CCACATTCAGATGATGGCCGATGTGGGTCAAGATCTTaGGTTCGGTCATCAGAGCTTTGTACTCACTGGCTG +
Preference number: 6 (lower is better)
Translates to: PHSDDGRCGSRS*VRSSELCTHWL
Trigger: CAGCCAGTGAGTACAAAGCTCTGATGACCGAACTCAAGATCTTGACCCACATCGGCCATCATCTGAATGTGG
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000031653.12
CDS GCA 72 bp AGGCCTGGTTCCAGGCTCTCTTTCTTGAGCTCCATATaGAAGGCTGCGTCCTTGTTGAGACAGAATAAGTCA +
Preference number: 6 (lower is better)
Translates to: RPGSRLSFLSSI*KAASLLRQNKS
Trigger: TGACTTATTCTGTCTCAACAAGGACGCAGCCTTGCATATGGAGCTCAAGAAAGAGAGCCTGGAACCAGGCCT
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000031653.12
CDS CAA 90 bp AGGTGCCCGTTGACGGTGGCTTCGCAGTTCAGCAGTCCTATCTCTTaGTACGTTGCATTTGCTATTATAAAGCCTCTCCTACTGTCCCAT +
Preference number: 6 (lower is better)
Translates to: RCPLTVASQFSSPIS*YVAFAIIKPLLLSH
Trigger: ATGGGACAGTAGGAGAGGCTTTATAATAGCAAATGCAACGTACAAAGAGATAGGACTGCTGAACTGCGAAGCCACCGTCAACGGGCACCT
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000031653.12
ENSMUST00000110529.6
CDS CAA 90 bp CGGCTCTCCACATTGTTGATCTTAAGAACACTGTGGAACACATTGTaGTGGGAATGGCTCCGGTCAATCCGCTGCCTTATAGATGCTCTC +
Preference number: 6 (lower is better)
Translates to: RLSTLLILRTLWNTL*WEWLRSIRCLIDAL
Trigger: GAGAGCATCTATAAGGCAGCGGATTGACCGGAGCCATTCCCACAACAATGTGTTCCACAGTGTTCTTAAGATCAACAATGTGGAGAGCCG
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000031653.12
ENSMUST00000110529.6
CDS GCA 72 bp CCGGTCAATCCGCTGCCTTATAGATGCTCTCTTAGTTaGTTTACCAGGGTAATTCCAGCTCATTTGCACCCT +
Preference number: 6 (lower is better)
Translates to: PVNPLPYRCSLS*FTRVIPAHLHP
Trigger: AGGGTGCAAATGAGCTGGAATTACCCTGGTAAAGCAACTAAGAGAGCATCTATAAGGCAGCGGATTGACCGG
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000031653.12
ENSMUST00000110529.6
CDS CAA 72 bp CTGATGAATCCTTTTTCATACACATGCACGGAGGTGTaGAAAGACTGGAACGAGGACCCACTCTTCACGCGA +
Preference number: 6 (lower is better)
Translates to: LMNPFSYTCTEV*KDWNEDPLFTR
Trigger: TCGCGTGAAGAGTGGGTCCTCGTTCCAGTCTTTCAACACCTCCGTGCATGTGTATGAAAAAGGATTCATCAG
49% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000031653.12
ENSMUST00000110529.6
CDS CAA 72 bp CTCTTTGGGGTCTTTGTGCCAGCAATCCAACATGATTaGGTAGATTTCAGGTGTGGCATACTCCGGGGTTCT +
Preference number: 6 (lower is better)
Translates to: LFGVFVPAIQHD*VDFRCGILRGS
Trigger: AGAACCCCGGAGTATGCCACACCTGAAATCTACCAAATCATGTTGGATTGCTGGCACAAAGACCCCAAAGAG
49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000031653.12
CDS CAA 90 bp TCTCGGCTCTCCACATTGTTGATCTTAAGAACACTGTGGAACACATaGTTGTGGGAATGGCTCCGGTCAATCCGCTGCCTTATAGATGCT +
Preference number: 6 (lower is better)
Translates to: SRLSTLLILRTLWNT*LWEWLRSIRCLIDA
Trigger: AGCATCTATAAGGCAGCGGATTGACCGGAGCCATTCCCACAACAATGTGTTCCACAGTGTTCTTAAGATCAACAATGTGGAGAGCCGAGA
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000031653.12
ENSMUST00000110529.6
CDS GCA 72 bp CCTTCCGTCATGTGCACAAGTTTGGGTATGTCAGTGTaGATCTCTATGAAAGGACTCCCTGCATCACTAACA +
Preference number: 6 (lower is better)
Translates to: PSVMCTSLGMSV*ISMKGLPASLT
Trigger: TGTTAGTGATGCAGGGAGTCCTTTCATAGAGATGCACACTGACATACCCAAACTTGTGCACATGACGGAAGG
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000031653.12
ENSMUST00000110529.6
CDS CCA 72 bp ATCTTAAGAACACTGTGGAACACATTGTTGTGGGAATaGCTCCGGTCAATCCGCTGCCTTATAGATGCTCTC +
Preference number: 6 (lower is better)
Translates to: ILRTLWNTLLWE*LRSIRCLIDAL
Trigger: GAGAGCATCTATAAGGCAGCGGATTGACCGGAGCCATTCCCACAACAATGTGTTCCACAGTGTTCTTAAGAT
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000031653.12
ENSMUST00000110529.6
CDS GCA 72 bp CGATGTTTCACACTGATGAATCCTTTTTCATACACATaGACGGAGGTGTTGAAAGACTGGAACGAGGACCCA +
Preference number: 6 (lower is better)
Translates to: RCFTLMNPFSYT*TEVLKDWNEDP
Trigger: TGGGTCCTCGTTCCAGTCTTTCAACACCTCCGTGCATGTGTATGAAAAAGGATTCATCAGTGTGAAACATCG
46% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000031653.12
ENSMUST00000110529.6
CDS CCA 72 bp TTGAGAAAGAGAGTCTGGCCTGCTTGCATGACATGCTaGGTGCCTTTTAAACTCAGTTCAGGCACTTTTAAC +
Preference number: 6 (lower is better)
Translates to: LRKRVWPACMTC*VPFKLSSGTFN
Trigger: GTTAAAAGTGCCTGAACTGAGTTTAAAAGGCACCCAGCATGTCATGCAAGCAGGCCAGACTCTCTTTCTCAA
46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000031653.12
ENSMUST00000110529.6
CDS CAA 72 bp ATGATGAGCTGTCTTCCTTCCGTCATGTGCACAAGTTaGGGTATGTCAGTGTGCATCTCTATGAAAGGACTC +
Preference number: 6 (lower is better)
Translates to: MMSCLPSVMCTS*GMSVCISMKGL
Trigger: GAGTCCTTTCATAGAGATGCACACTGACATACCCAAACTTGTGCACATGACGGAAGGAAGACAGCTCATCAT
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000031653.12
ENSMUST00000110529.6
CDS TCA 72 bp ACCGTCTTATTTGTTCCTTCTATGACCGTCATGCGCTaGGAGATGCTCTCAATTCTGTTTCCTAAGTTGCTG +
Preference number: 6 (lower is better)
Translates to: TVLFVPSMTVMR*EMLSILFPKLL
Trigger: CAGCAACTTAGGAAACAGAATTGAGAGCATCTCTCAGCGCATGACGGTCATAGAAGGAACAAATAAGACGGT
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000031653.12
ENSMUST00000110529.6
CDS CCA 72 bp TTGTTGATCTTAAGAACACTGTGGAACACATTGTTGTaGGAATGGCTCCGGTCAATCCGCTGCCTTATAGAT +
Preference number: 6 (lower is better)
Translates to: LLILRTLWNTLL*EWLRSIRCLID
Trigger: ATCTATAAGGCAGCGGATTGACCGGAGCCATTCCCACAACAATGTGTTCCACAGTGTTCTTAAGATCAACAA
44% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000031653.12
ENSMUST00000110529.6
CDS CAA 72 bp TTGACGGTGGCTTCGCAGTTCAGCAGTCCTATCTCTTaGTACGTTGCATTTGCTATTATAAAGCCTCTCCTA +
Preference number: 6 (lower is better)
Translates to: LTVASQFSSPIS*YVAFAIIKPLL
Trigger: TAGGAGAGGCTTTATAATAGCAAATGCAACGTACAAAGAGATAGGACTGCTGAACTGCGAAGCCACCGTCAA
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000031653.12
ENSMUST00000110529.6
CDS CAA 72 bp ACATTGTTGATCTTAAGAACACTGTGGAACACATTGTaGTGGGAATGGCTCCGGTCAATCCGCTGCCTTATA +
Preference number: 6 (lower is better)
Translates to: TLLILRTLWNTL*WEWLRSIRCLI
Trigger: TATAAGGCAGCGGATTGACCGGAGCCATTCCCACAACAATGTGTTCCACAGTGTTCTTAAGATCAACAATGT
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000031653.12
ENSMUST00000110529.6
CDS GCA 72 bp GCAGTTCAGCAGTCCTATCTCTTTGTACGTTGCATTTaGTATTATAAAGCCTCTCCTACTGTCCCATGTTAT +
Preference number: 6 (lower is better)
Translates to: AVQQSYLFVRCI*YYKASPTVPCY
Trigger: ATAACATGGGACAGTAGGAGAGGCTTTATAATAGCAAATGCAACGTACAAAGAGATAGGACTGCTGAACTGC
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000031653.12
ENSMUST00000110529.6
CDS CAA 72 bp TATTATAAAGCCTCTCCTACTGTCCCATGTTATTCTTaGCCCATCAGGGGTAAGAGTATCAAATGGAAACTT +
Preference number: 6 (lower is better)
Translates to: YYKASPTVPCYS*PIRGKSIKWKL
Trigger: AAGTTTCCATTTGATACTCTTACCCCTGATGGGCAAAGAATAACATGGGACAGTAGGAGAGGCTTTATAATA
39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000031653.12
ENSMUST00000110529.6