RADAR | Search for sensor designs | Human genes | Mouse genes | Code

Pregenerated sensors for FLCN (Mus musculus)

Ensembl gene IDs: ENSMUSG00000032633

Ensembl transcript IDs: ENSMUST00000047706.3, ENSMUST00000091246.11, ENSMUST00000102697.10

Found 214 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).

Type Sensor Details
3UTR GCA 90 bp AACAAAACAGCCATGGTTTTGATGTATCCACAGGCCGGCAAGATGTaGAGAGGCCACGGCTGTGCACGTGACCTGAGAAGTCACCAACCG +
Preference number: 1 (lower is better)
Translates to: NKTAMVLMYPQAGKM*RGHGCARDLRSHQP
Trigger: CGGTTGGTGACTTCTCAGGTCACGTGCACAGCCGTGGCCTCTGCACATCTTGCCGGCCTGTGGATACATCAAAACCATGGCTGTTTTGTT
54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000091246.11
ENSMUST00000102697.10
3UTR CCA 90 bp CACACCTACTCCAACAGGGCTGCACCTCCTAATAGTGCCACTCCCTaGGCAGAGCACATACAAACCACCACAGTATTTAACATAAAAACA +
Preference number: 1 (lower is better)
Translates to: HTYSNRAAPPNSATP*AEHIQTTTVFNIKT
Trigger: TGTTTTTATGTTAAATACTGTGGTGGTTTGTATGTGCTCTGCCCAGGGAGTGGCACTATTAGGAGGTGCAGCCCTGTTGGAGTAGGTGTG
48% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000102697.10
3UTR-3UTR GCA 90 bp GGTTTTGATGTATCCACAGGCCGGCAAGATGTGCAGAGGCCACGGCTGTGCACGATGATCCACGATGCTTaGTGTCTTCCATGGTGGGAA +
Preference number: 2 (lower is better)
Translates to: GFDVSTGRQDVQRPRLCTMIHDA*CLPWWE
Trigger: TTCCCACCATGGAAGACAGCAAGCATCGTGGATCAT...CGTGCACAGCCGTGGCCTCTGCACATCTTGCCGGCCTGTGGATACATCAAAACC
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000091246.11
ENSMUST00000102697.10
3UTR-3UTR CCA 90 bp TCAGTTCCCAGCCTTTGTCCTCACGGGGCACAGAACACATCTCGCCAGGTCCTGTTTTTCCCACAGAGCTaGTCTGTACACCACCTTCCA +
Preference number: 2 (lower is better)
Translates to: SVPSLCPHGAQNTSRQVLFFPQS*SVHHLP
Trigger: TGGAAGGTGGTGTACAGACCAGCTCTGTGGGAAAAA...CAGGACCTGGCGAGATGTGTTCTGTGCCCCGTGAGGACAAAGGCTGGGAACTGA
54% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000091246.11
ENSMUST00000102697.10
3UTR-3UTR CCA 90 bp TCTCAGTTCCCAGCCTTTGTCCTCACGGGGCACAGAACACATCTCGCCAGGTCCCCCTACATTTCAACATaGGCTGATAGAGTCTTACAA +
Preference number: 2 (lower is better)
Translates to: SQFPAFVLTGHRTHLARSPYIST*ADRVLQ
Trigger: TTGTAAGACTCTATCAGCCCATGTTGAAATGTAGGG...GGACCTGGCGAGATGTGTTCTGTGCCCCGTGAGGACAAAGGCTGGGAACTGAGA
51% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000091246.11
ENSMUST00000102697.10
3UTR-3UTR CCA 90 bp GTCATAGTCTACAGTGGCTGGTTAGCGCTACGGCAGCAACAGAGAAGAAAGCAATGCTGTCTTCCATGGTaGGAAGGCGTTGTCCTAACC +
Preference number: 2 (lower is better)
Translates to: VIVYSGWLALRQQQRRKQCCLPW*EGVVLT
Trigger: GGTTAGGACAACGCCTTCCCACCATGGAAGACAGCA...TTGCTTTCTTCTCTGTTGCTGCCGTAGCGCTAACCAGCCACTGTAGACTATGAC
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000091246.11
ENSMUST00000102697.10
3UTR-3UTR TCA 90 bp CAGGAGGATTGCTACAAGTCTGGAAGTAGCAGAGGCCACACCATGAGTTCTAAAAAACAGCCATGGTTTTaGTGTATCCACAGGCCGGCA +
Preference number: 2 (lower is better)
Translates to: QEDCYKSGSSRGHTMSSKKQPWF*CIHRPA
Trigger: TGCCGGCCTGTGGATACATCAAAACCATGGCTGTTT...TTTAGAACTCATGGTGTGGCCTCTGCTACTTCCAGACTTGTAGCAATCCTCCTG
49% GC, longest homopolymer 6 nt, total homopolymer stretches 10 nt.
Matches the following 2 transcripts:
ENSMUST00000091246.11
ENSMUST00000102697.10
3UTR-3UTR TCA 90 bp GCAGGCATGGAGCAGGAGGAGCTAAGAGTTCTCCATCTTCATCTGAAGGCTGCTCAACTGTACAGAGACTaGGATACACAGTCTTCATGT +
Preference number: 2 (lower is better)
Translates to: AGMEQEELRVLHLHLKAAQLYRD*DTQSSC
Trigger: ACATGAAGACTGTGTATCTCAGTCTCTGTACAGTTG...AGCAGCCTTCAGATGAAGATGGAGAACTCTTAGCTCCTCCTGCTCCATGCCTGC
49% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000102697.10
3UTR-3UTR GCA 90 bp GTCATAGTCTACAGTGGCTGGTTAGCGCTACGGCAGCAACAGAGAAGAAAGCAAATGATCCACGATGCTTaGTGTCTTCCATGGTGGGAA +
Preference number: 2 (lower is better)
Translates to: VIVYSGWLALRQQQRRKQMIHDA*CLPWWE
Trigger: TTCCCACCATGGAAGACAGCAAGCATCGTGGATCAT...TTGCTTTCTTCTCTGTTGCTGCCGTAGCGCTAACCAGCCACTGTAGACTATGAC
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000091246.11
ENSMUST00000102697.10
3UTR GCA 72 bp GCCATGGTTTTGATGTATCCACAGGCCGGCAAGATGTaGAGAGGCCACGGCTGTGCACGTGACCTGAGAAGT +
Preference number: 3 (lower is better)
Translates to: AMVLMYPQAGKM*RGHGCARDLRS
Trigger: ACTTCTCAGGTCACGTGCACAGCCGTGGCCTCTGCACATCTTGCCGGCCTGTGGATACATCAAAACCATGGC
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000091246.11
ENSMUST00000102697.10
3UTR TCA 72 bp ACAGAACACATCTCGCCAGGTCCTGACAGCGCAGTTTaGTGCAAAGGGACCACTGTCTCTGTGTCCCCTACA +
Preference number: 3 (lower is better)
Translates to: TEHISPGPDSAV*CKGTTVSVSPT
Trigger: TGTAGGGGACACAGAGACAGTGGTCCCTTTGCATCAAACTGCGCTGTCAGGACCTGGCGAGATGTGTTCTGT
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000091246.11
ENSMUST00000102697.10
3UTR TCA 72 bp GCAGCTAAGAGGAGGGTCTTAAAGCCACACCCACAGTaGCACACCTACTCCAACAGGGCTGCACCTCCTAAT +
Preference number: 3 (lower is better)
Translates to: AAKRRVLKPHPQ*HTYSNRAAPPN
Trigger: ATTAGGAGGTGCAGCCCTGTTGGAGTAGGTGTGTCACTGTGGGTGTGGCTTTAAGACCCTCCTCTTAGCTGC
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000102697.10
3UTR-3UTR CAA 90 bp AACAGCCATGGTTTTGATGTATCCACAGGCCGGCAAGATGTGCAGAGGCCACGGAATGATCCACGATGCTaGCTGTCTTCCATGGTGGGA +
Preference number: 3 (lower is better)
Translates to: NSHGFDVSTGRQDVQRPRNDPRC*LSSMVG
Trigger: TCCCACCATGGAAGACAGCAAGCATCGTGGATCATT...CCGTGGCCTCTGCACATCTTGCCGGCCTGTGGATACATCAAAACCATGGCTGTT
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000091246.11
ENSMUST00000102697.10
3UTR-3UTR CAA 90 bp CCAGGCAGGCATGGAGCAGGAGGAGCTAAGAGTTCTCCATCTTCATCTGAAGGCAATGATCCACGATGCTaGCTGTCTTCCATGGTGGGA +
Preference number: 3 (lower is better)
Translates to: PGRHGAGGAKSSPSSSEGNDPRC*LSSMVG
Trigger: TCCCACCATGGAAGACAGCAAGCATCGTGGATCATT...GCCTTCAGATGAAGATGGAGAACTCTTAGCTCCTCCTGCTCCATGCCTGCCTGG
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000102697.10
3UTR TCA 72 bp AGGACACGCTCCAACAACAAAACCTCAGAGGCAGACTaGTGGACTCCTCTCAGTTCCCAGCCTTTGTCCTCA +
Preference number: 3 (lower is better)
Translates to: RTRSNNKTSEAD*WTPLSSQPLSS
Trigger: TGAGGACAAAGGCTGGGAACTGAGAGGAGTCCATCAGTCTGCCTCTGAGGTTTTGTTGTTGGAGCGTGTCCT
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000091246.11
ENSMUST00000102697.10
3UTR TCA 72 bp GCACGTGACCTGAGAAGTCACCAACCGAAAGACAAATaGTCCACGATGCTTGCTGTCTTCCATGGTGGGAAG +
Preference number: 3 (lower is better)
Translates to: ARDLRSHQPKDK*STMLAVFHGGK
Trigger: CTTCCCACCATGGAAGACAGCAAGCATCGTGGATCATTTGTCTTTCGGTTGGTGACTTCTCAGGTCACGTGC
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000091246.11
ENSMUST00000102697.10
3UTR CCA 72 bp AAGTCAGAAACCCAAGGGCAGTTTTTCCCACAGAGCTaGTCTGTACACCACCTTCCAGAAGGAGTTCTCGGA +
Preference number: 3 (lower is better)
Translates to: KSETQGQFFPQS*SVHHLPEGVLG
Trigger: TCCGAGAACTCCTTCTGGAAGGTGGTGTACAGACCAGCTCTGTGGGAAAAACTGCCCTTGGGTTTCTGACTT
51% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000091246.11
ENSMUST00000102697.10
3UTR CCA 72 bp GCGATCTGTCGTAACACCGTCATAGTCTACAGTGGCTaGTTAGCGCTACGGCAGCAACAGAGAAGAAAGCAA +
Preference number: 3 (lower is better)
Translates to: AICRNTVIVYSG*LALRQQQRRKQ
Trigger: TTGCTTTCTTCTCTGTTGCTGCCGTAGCGCTAACCAGCCACTGTAGACTATGACGGTGTTACGACAGATCGC
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000091246.11
ENSMUST00000102697.10
3UTR TCA 72 bp ATTTCAACATGGGCTGATAGAGTCTTACAAGGAGGGTaGACCCTAGGCCATAAACAGGGCCTCACCCCAGAA +
Preference number: 3 (lower is better)
Translates to: ISTWADRVLQGG*TLGHKQGLTPE
Trigger: TTCTGGGGTGAGGCCCTGTTTATGGCCTAGGGTTCACCCTCCTTGTAAGACTCTATCAGCCCATGTTGAAAT
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000091246.11
ENSMUST00000102697.10
3UTR-3UTR CAA 90 bp CAGGAGGATTGCTACAAGTCTGGAAGTAGCAGAGGCCACACCATGAGTTCTAAAAAAACAGCCATGGTTTaGATGTATCCACAGGCCGGC +
Preference number: 3 (lower is better)
Translates to: QEDCYKSGSSRGHTMSSKKTAMV*MYPQAG
Trigger: GCCGGCCTGTGGATACATCAAAACCATGGCTGTTTT...TTTAGAACTCATGGTGTGGCCTCTGCTACTTCCAGACTTGTAGCAATCCTCCTG
49% GC, longest homopolymer 7 nt, total homopolymer stretches 7 nt.
Matches the following 2 transcripts:
ENSMUST00000091246.11
ENSMUST00000102697.10
3UTR GCA 72 bp TTCAGGAAATCTTTCCAAGCTACGTCCTTATTAAACTaGAATGGTGAGAGGCGATCTGTCGTAACACCGTCA +
Preference number: 3 (lower is better)
Translates to: FRKSFQATSLLN*NGERRSVVTPS
Trigger: TGACGGTGTTACGACAGATCGCCTCTCACCATTGCAGTTTAATAAGGACGTAGCTTGGAAAGATTTCCTGAA
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000091246.11
ENSMUST00000102697.10
3UTR CCA 72 bp ATGACCAAGGCAATTCTCATAAGGACAACATTTAATTaGGGCTGTCTTATAGTTTCAGTCCATTATCATCAA +
Preference number: 3 (lower is better)
Translates to: MTKAILIRTTFN*GCLIVSVHYHQ
Trigger: TTGATGATAATGGACTGAAACTATAAGACAGCCCCAATTAAATGTTGTCCTTATGAGAATTGCCTTGGTCAT
36% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000102697.10
CDS-3UTR GCA 90 bp GGTTTTGATGTATCCACAGGCCGGCAAGATGTGCAGAGGCCACGGCTGTGCACGGGGCACGGACCCGGCTaGTCATCTGAATGCCACCCT +
Preference number: 4 (lower is better)
Translates to: GFDVSTGRQDVQRPRLCTGHGPG*SSECHP
Trigger: AGGGTGGCATTCAGATGAGCAGCCGGGTCCGTGCCC...CGTGCACAGCCGTGGCCTCTGCACATCTTGCCGGCCTGTGGATACATCAAAACC
61% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000091246.11
ENSMUST00000102697.10
CDS-3UTR GCA 90 bp TCAGTTCCCAGCCTTTGTCCTCACGGGGCACAGAACACATCTCGCCAGGTCCTGGAGAGCGGGCAGCGTTaGCGTTCCTCTGGTGCAGGA +
Preference number: 4 (lower is better)
Translates to: SVPSLCPHGAQNTSRQVLESGQR*RSSGAG
Trigger: TCCTGCACCAGAGGAACGGCAACGCTGCCCGCTCTC...CAGGACCTGGCGAGATGTGTTCTGTGCCCCGTGAGGACAAAGGCTGGGAACTGA
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000091246.11
ENSMUST00000102697.10
CDS-3UTR CCA 90 bp AACAGCCATGGTTTTGATGTATCCACAGGCCGGCAAGATGTGCAGAGGCCACGGCCACTTCCGGCCCCCTaGGGCAGGGGAGCGTGTAGA +
Preference number: 4 (lower is better)
Translates to: NSHGFDVSTGRQDVQRPRPLPAP*GRGACR
Trigger: TCTACACGCTCCCCTGCCCCAGGGGGCCGGAAGTGG...CCGTGGCCTCTGCACATCTTGCCGGCCTGTGGATACATCAAAACCATGGCTGTT
61% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 2 transcripts:
ENSMUST00000091246.11
ENSMUST00000102697.10
CDS-3UTR CCA 90 bp CCAGGCAGGCATGGAGCAGGAGGAGCTAAGAGTTCTCCATCTTCATCTGAAGGCAGCGTGCGGGGGCCATaGAGCTCGCAGAAGTGGCAG +
Preference number: 4 (lower is better)
Translates to: PGRHGAGGAKSSPSSSEGSVRGP*SSQKWQ
Trigger: CTGCCACTTCTGCGAGCTCCATGGCCCCCGCACGCT...GCCTTCAGATGAAGATGGAGAACTCTTAGCTCCTCCTGCTCCATGCCTGCCTGG
60% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000102697.10
CDS-3UTR CCA 90 bp AGGGCCTCACCCCAGAAGTCAGAAACCCAAGGGCAGTTTTTCCCACAGAGCTGGCTCCGGACACAGGCCTaGCGGACGATGCTGAAGAGC +
Preference number: 4 (lower is better)
Translates to: RASPQKSETQGQFFPQSWLRTQA*RTMLKS
Trigger: GCTCTTCAGCATCGTCCGCCAGGCCTGTGTCCGGAG...CCAGCTCTGTGGGAAAAACTGCCCTTGGGTTTCTGACTTCTGGGGTGAGGCCCT
60% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000091246.11
ENSMUST00000102697.10
CDS-3UTR CCA 90 bp TCTCAGTTCCCAGCCTTTGTCCTCACGGGGCACAGAACACATCTCGCCAGGTCCGCGTTGCCGTTCCTCTaGTGCAGGAAGGGCGTGAAG +
Preference number: 4 (lower is better)
Translates to: SQFPAFVLTGHRTHLARSALPFL*CRKGVK
Trigger: CTTCACGCCCTTCCTGCACCAGAGGAACGGCAACGC...GGACCTGGCGAGATGTGTTCTGTGCCCCGTGAGGACAAAGGCTGGGAACTGAGA
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000091246.11
ENSMUST00000102697.10
CDS-3UTR CCA 90 bp TCAGTTCCCAGCCTTTGTCCTCACGGGGCACAGAACACATCTCGCCAGGTCCTGCCAGGGTGTCCTCTGTaGGAGCGCCCTCTAAGAGCT +
Preference number: 4 (lower is better)
Translates to: SVPSLCPHGAQNTSRQVLPGCPL*ERPLRA
Trigger: AGCTCTTAGAGGGCGCTCCCACAGAGGACACCCTGG...CAGGACCTGGCGAGATGTGTTCTGTGCCCCGTGAGGACAAAGGCTGGGAACTGA
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000091246.11
ENSMUST00000102697.10
CDS-3UTR CCA 90 bp AATGATCCACGATGCTTGCTGTCTTCCATGGTGGGAAGGCGTTGTCCTAACCCCAGCGTGCGGGGGCCATaGAGCTCGCAGAAGTGGCAG +
Preference number: 4 (lower is better)
Translates to: NDPRCLLSSMVGRRCPNPSVRGP*SSQKWQ
Trigger: CTGCCACTTCTGCGAGCTCCATGGCCCCCGCACGCT...GGGGTTAGGACAACGCCTTCCCACCATGGAAGACAGCAAGCATCGTGGATCATT
59% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000091246.11
ENSMUST00000102697.10
CDS-3UTR CCA 90 bp AAAACAGCCATGGTTTTGATGTATCCACAGGCCGGCAAGATGTGCAGAGGCCACTGGGCCCCGGGCTGCTaGACTCACTGCTGGCACCCT +
Preference number: 4 (lower is better)
Translates to: KTAMVLMYPQAGKMCRGHWAPGC*THCWHP
Trigger: AGGGTGCCAGCAGTGAGTCCAGCAGCCCGGGGCCCA...GTGGCCTCTGCACATCTTGCCGGCCTGTGGATACATCAAAACCATGGCTGTTTT
59% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 2 transcripts:
ENSMUST00000091246.11
ENSMUST00000102697.10
CDS-3UTR TCA 90 bp CTCCAACAACAAAACCTCAGAGGCAGACTGATGGACTCCTCTCAGTTCCCAGCCGTGCCCTACGGCAAGTaGCCGGCAGCCCTCACACAT +
Preference number: 4 (lower is better)
Translates to: LQQQNLRGRLMDSSQFPAVPYGK*PAALTH
Trigger: ATGTGTGAGGGCTGCCGGTCACTTGCCGTAGGGCAC...GGCTGGGAACTGAGAGGAGTCCATCAGTCTGCCTCTGAGGTTTTGTTGTTGGAG
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000091246.11
ENSMUST00000102697.10
CDS-3UTR GCA 90 bp AGGGCCTCACCCCAGAAGTCAGAAACCCAAGGGCAGTTTTTCCCACAGAGCTGGGGCTGCTCATCTGAATaGCACCCTCCTCCTCCTCAG +
Preference number: 4 (lower is better)
Translates to: RASPQKSETQGQFFPQSWGCSSE*HPPPPQ
Trigger: CTGAGGAGGAGGAGGGTGGCATTCAGATGAGCAGCC...CCAGCTCTGTGGGAAAAACTGCCCTTGGGTTTCTGACTTCTGGGGTGAGGCCCT
58% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 2 transcripts:
ENSMUST00000091246.11
ENSMUST00000102697.10
CDS-3UTR CCA 90 bp CCAGGCAGGCATGGAGCAGGAGGAGCTAAGAGTTCTCCATCTTCATCTGAAGGCCCAGGGTGTCCTCTGTaGGAGCGCCCTCTAAGAGCT +
Preference number: 4 (lower is better)
Translates to: PGRHGAGGAKSSPSSSEGPGCPL*ERPLRA
Trigger: AGCTCTTAGAGGGCGCTCCCACAGAGGACACCCTGG...GCCTTCAGATGAAGATGGAGAACTCTTAGCTCCTCCTGCTCCATGCCTGCCTGG
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000102697.10
CDS-3UTR TCA 90 bp AAAACAGCCATGGTTTTGATGTATCCACAGGCCGGCAAGATGTGCAGAGGCCACAGCAGGGTGGAGGTTTaGGCGAGTGGCCGTGTGGAC +
Preference number: 4 (lower is better)
Translates to: KTAMVLMYPQAGKMCRGHSRVEV*ASGRVD
Trigger: GTCCACACGGCCACTCGCTCAAACCTCCACCCTGCT...GTGGCCTCTGCACATCTTGCCGGCCTGTGGATACATCAAAACCATGGCTGTTTT
57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000091246.11
ENSMUST00000102697.10
CDS-3UTR TCA 90 bp GAAACCCAAGGGCAGTTTTTCCCACAGAGCTGGTCTGTACACCACCTTCCAGAAAGCAGGGTGGAGGTTTaGGCGAGTGGCCGTGTGGAC +
Preference number: 4 (lower is better)
Translates to: ETQGQFFPQSWSVHHLPESRVEV*ASGRVD
Trigger: GTCCACACGGCCACTCGCTCAAACCTCCACCCTGCT...TTCTGGAAGGTGGTGTACAGACCAGCTCTGTGGGAAAAACTGCCCTTGGGTTTC
57% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000091246.11
ENSMUST00000102697.10
CDS-3UTR GCA 90 bp AATGATCCACGATGCTTGCTGTCTTCCATGGTGGGAAGGCGTTGTCCTAACCCCCGTGTAGAACTTCCGTaGAGAAGAGCGTGCGGGGGC +
Preference number: 4 (lower is better)
Translates to: NDPRCLLSSMVGRRCPNPRVELP*RRACGG
Trigger: GCCCCCGCACGCTCTTCTGCACGGAAGTTCTACACG...GGGGTTAGGACAACGCCTTCCCACCATGGAAGACAGCAAGCATCGTGGATCATT
57% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 2 transcripts:
ENSMUST00000091246.11
ENSMUST00000102697.10
CDS-3UTR GCA 90 bp AACAGCCATGGTTTTGATGTATCCACAGGCCGGCAAGATGTGCAGAGGCCACGGTCCTCCTCCTCAGCCTaGTCAACCTGGTCAGGACTG +
Preference number: 4 (lower is better)
Translates to: NSHGFDVSTGRQDVQRPRSSSSA*STWSGL
Trigger: CAGTCCTGACCAGGTTGAGCAGGCTGAGGAGGAGGA...CCGTGGCCTCTGCACATCTTGCCGGCCTGTGGATACATCAAAACCATGGCTGTT
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000091246.11
ENSMUST00000102697.10
CDS-3UTR GCA 90 bp GCAGGCATGGAGCAGGAGGAGCTAAGAGTTCTCCATCTTCATCTGAAGGCTGCTACGATGCTGAAGAGCTaGGGGTGGTTGGGGTGCTGG +
Preference number: 4 (lower is better)
Translates to: AGMEQEELRVLHLHLKAATMLKS*GWLGCW
Trigger: CCAGCACCCCAACCACCCGCAGCTCTTCAGCATCGT...AGCAGCCTTCAGATGAAGATGGAGAACTCTTAGCTCCTCCTGCTCCATGCCTGC
57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000102697.10
CDS-3UTR GCA 90 bp CCAGGCAGGCATGGAGCAGGAGGAGCTAAGAGTTCTCCATCTTCATCTGAAGGCTTGCCGTTCCTCTGGTaGAGGAAGGGCGTGAAGGCA +
Preference number: 4 (lower is better)
Translates to: PGRHGAGGAKSSPSSSEGLPFLW*RKGVKA
Trigger: TGCCTTCACGCCCTTCCTGCACCAGAGGAACGGCAA...GCCTTCAGATGAAGATGGAGAACTCTTAGCTCCTCCTGCTCCATGCCTGCCTGG
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000102697.10
CDS-3UTR GCA 90 bp TCTCAGTTCCCAGCCTTTGTCCTCACGGGGCACAGAACACATCTCGCCAGGTCCCAGGCAAAGGAAGTGTaGAGACACGCCCACAAGTTG +
Preference number: 4 (lower is better)
Translates to: SQFPAFVLTGHRTHLARSQAKEV*RHAHKL
Trigger: CAACTTGTGGGCGTGTCTGCACACTTCCTTTGCCTG...GGACCTGGCGAGATGTGTTCTGTGCCCCGTGAGGACAAAGGCTGGGAACTGAGA
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000091246.11
ENSMUST00000102697.10
CDS-3UTR GCA 90 bp GGTTTTGATGTATCCACAGGCCGGCAAGATGTGCAGAGGCCACGGCTGTGCACGCAGGCAAAGGAAGTGTaGAGACACGCCCACAAGTTG +
Preference number: 4 (lower is better)
Translates to: GFDVSTGRQDVQRPRLCTQAKEV*RHAHKL
Trigger: CAACTTGTGGGCGTGTCTGCACACTTCCTTTGCCTG...CGTGCACAGCCGTGGCCTCTGCACATCTTGCCGGCCTGTGGATACATCAAAACC
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000091246.11
ENSMUST00000102697.10
CDS-3UTR GCA 90 bp CTCCAACAACAAAACCTCAGAGGCAGACTGATGGACTCCTCTCAGTTCCCAGCCGGGCCCAACTCTGTCTaGAGCCACAGGGCTACCACT +
Preference number: 4 (lower is better)
Translates to: LQQQNLRGRLMDSSQFPAGPNSV*SHRATT
Trigger: AGTGGTAGCCCTGTGGCTGCAGACAGAGTTGGGCCC...GGCTGGGAACTGAGAGGAGTCCATCAGTCTGCCTCTGAGGTTTTGTTGTTGGAG
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000091246.11
ENSMUST00000102697.10
CDS-3UTR GCA 90 bp AATGATCCACGATGCTTGCTGTCTTCCATGGTGGGAAGGCGTTGTCCTAACCCCGGGCCCAACTCTGTCTaGAGCCACAGGGCTACCACT +
Preference number: 4 (lower is better)
Translates to: NDPRCLLSSMVGRRCPNPGPNSV*SHRATT
Trigger: AGTGGTAGCCCTGTGGCTGCAGACAGAGTTGGGCCC...GGGGTTAGGACAACGCCTTCCCACCATGGAAGACAGCAAGCATCGTGGATCATT
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000091246.11
ENSMUST00000102697.10
CDS-3UTR CCA 90 bp CTCCAACAACAAAACCTCAGAGGCAGACTGATGGACTCCTCTCAGTTCCCAGCCTGGAGCTCGCAGAAGTaGCAGAGGGCGACTATGGCG +
Preference number: 4 (lower is better)
Translates to: LQQQNLRGRLMDSSQFPAWSSQK*QRATMA
Trigger: CGCCATAGTCGCCCTCTGCCACTTCTGCGAGCTCCA...GGCTGGGAACTGAGAGGAGTCCATCAGTCTGCCTCTGAGGTTTTGTTGTTGGAG
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000091246.11
ENSMUST00000102697.10
CDS-3UTR CCA 90 bp GTCTCTGTGTCCCCTACATTTCAACATGGGCTGATAGAGTCTTACAAGGAGGGTTGGGCCCCGGGCTGCTaGACTCACTGCTGGCACCCT +
Preference number: 4 (lower is better)
Translates to: VSVSPTFQHGLIESYKEGWAPGC*THCWHP
Trigger: AGGGTGCCAGCAGTGAGTCCAGCAGCCCGGGGCCCA...ACCCTCCTTGTAAGACTCTATCAGCCCATGTTGAAATGTAGGGGACACAGAGAC
57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000091246.11
ENSMUST00000102697.10
CDS-3UTR CCA 90 bp GAAACCCAAGGGCAGTTTTTCCCACAGAGCTGGTCTGTACACCACCTTCCAGAACTCCGGACACAGGCCTaGCGGACGATGCTGAAGAGC +
Preference number: 4 (lower is better)
Translates to: ETQGQFFPQSWSVHHLPELRTQA*RTMLKS
Trigger: GCTCTTCAGCATCGTCCGCCAGGCCTGTGTCCGGAG...TTCTGGAAGGTGGTGTACAGACCAGCTCTGTGGGAAAAACTGCCCTTGGGTTTC
57% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000091246.11
ENSMUST00000102697.10
CDS-3UTR CCA 90 bp AACAGCCATGGTTTTGATGTATCCACAGGCCGGCAAGATGTGCAGAGGCCACGGCCTCTGGGCACGCTGTaGACATCCAAACTGCTCTGC +
Preference number: 4 (lower is better)
Translates to: NSHGFDVSTGRQDVQRPRPLGTL*TSKLLC
Trigger: GCAGAGCAGTTTGGATGTCCACAGCGTGCCCAGAGG...CCGTGGCCTCTGCACATCTTGCCGGCCTGTGGATACATCAAAACCATGGCTGTT
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000091246.11
ENSMUST00000102697.10
CDS-3UTR CCA 90 bp AGGGCCTCACCCCAGAAGTCAGAAACCCAAGGGCAGTTTTTCCCACAGAGCTGGGCAAGCTTCTCCATCTaGACCAGGGTGTCCTCTGTG +
Preference number: 4 (lower is better)
Translates to: RASPQKSETQGQFFPQSWASFSI*TRVSSV
Trigger: CACAGAGGACACCCTGGTCCAGATGGAGAAGCTTGC...CCAGCTCTGTGGGAAAAACTGCCCTTGGGTTTCTGACTTCTGGGGTGAGGCCCT
57% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000091246.11
ENSMUST00000102697.10
CDS-3UTR CCA 90 bp GGTTTTGATGTATCCACAGGCCGGCAAGATGTGCAGAGGCCACGGCTGTGCACGCCCTTCAGCACCCTCTaGTGTAACAGGAGCTTTCTC +
Preference number: 4 (lower is better)
Translates to: GFDVSTGRQDVQRPRLCTPFSTL*CNRSFL
Trigger: GAGAAAGCTCCTGTTACACCAGAGGGTGCTGAAGGG...CGTGCACAGCCGTGGCCTCTGCACATCTTGCCGGCCTGTGGATACATCAAAACC
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000091246.11
ENSMUST00000102697.10
CDS-3UTR CCA 90 bp AACAGCCATGGTTTTGATGTATCCACAGGCCGGCAAGATGTGCAGAGGCCACGGTCTGAGGCCAGAACATaGGCAGGGATAGGCACGGGA +
Preference number: 4 (lower is better)
Translates to: NSHGFDVSTGRQDVQRPRSEART*AGIGTG
Trigger: TCCCGTGCCTATCCCTGCCCATGTTCTGGCCTCAGA...CCGTGGCCTCTGCACATCTTGCCGGCCTGTGGATACATCAAAACCATGGCTGTT
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000091246.11
ENSMUST00000102697.10
CDS-3UTR CCA 90 bp AATGATCCACGATGCTTGCTGTCTTCCATGGTGGGAAGGCGTTGTCCTAACCCCGAGCGAGTGGCCGTGTaGACCTCCACGACAACTACG +
Preference number: 4 (lower is better)
Translates to: NDPRCLLSSMVGRRCPNPERVAV*TSTTTT
Trigger: CGTAGTTGTCGTGGAGGTCCACACGGCCACTCGCTC...GGGGTTAGGACAACGCCTTCCCACCATGGAAGACAGCAAGCATCGTGGATCATT
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000091246.11
ENSMUST00000102697.10
CDS-3UTR CCA 90 bp AGGGCCTCACCCCAGAAGTCAGAAACCCAAGGGCAGTTTTTCCCACAGAGCTGGTCTGTGTGTCCTCCTTaGGGCGACTGTCTACCTTGG +
Preference number: 4 (lower is better)
Translates to: RASPQKSETQGQFFPQSWSVCPP*GDCLPW
Trigger: CCAAGGTAGACAGTCGCCCCAAGGAGGACACACAGA...CCAGCTCTGTGGGAAAAACTGCCCTTGGGTTTCTGACTTCTGGGGTGAGGCCCT
57% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000091246.11
ENSMUST00000102697.10
CDS-3UTR TCA 90 bp GTCATAGTCTACAGTGGCTGGTTAGCGCTACGGCAGCAACAGAGAAGAAAGCAAGTGCCCTACGGCAAGTaGCCGGCAGCCCTCACACAT +
Preference number: 4 (lower is better)
Translates to: VIVYSGWLALRQQQRRKQVPYGK*PAALTH
Trigger: ATGTGTGAGGGCTGCCGGTCACTTGCCGTAGGGCAC...TTGCTTTCTTCTCTGTTGCTGCCGTAGCGCTAACCAGCCACTGTAGACTATGAC
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000091246.11
ENSMUST00000102697.10
CDS-3UTR GCA 90 bp AGAAACCCAAGGGCAGTTTTTCCCACAGAGCTGGTCTGTACACCACCTTCCAGACGTGTAGAACTTCCGTaGAGAAGAGCGTGCGGGGGC +
Preference number: 4 (lower is better)
Translates to: RNPRAVFPTELVCTPPSRRVELP*RRACGG
Trigger: GCCCCCGCACGCTCTTCTGCACGGAAGTTCTACACG...TCTGGAAGGTGGTGTACAGACCAGCTCTGTGGGAAAAACTGCCCTTGGGTTTCT
56% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 2 transcripts:
ENSMUST00000091246.11
ENSMUST00000102697.10
CDS-3UTR GCA 90 bp TTTCAGTCCATTATCATCAAGGTGGGAACATGGCAGCTTCCAGGCAGGCATGGAGGGCACGGACCCGGCTaGTCATCTGAATGCCACCCT +
Preference number: 4 (lower is better)
Translates to: FQSIIIKVGTWQLPGRHGGHGPG*SSECHP
Trigger: AGGGTGGCATTCAGATGAGCAGCCGGGTCCGTGCCC...TCCATGCCTGCCTGGAAGCTGCCATGTTCCCACCTTGATGATAATGGACTGAAA
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000102697.10
CDS-3UTR GCA 90 bp AATGATCCACGATGCTTGCTGTCTTCCATGGTGGGAAGGCGTTGTCCTAACCCCTTGCCGTTCCTCTGGTaGAGGAAGGGCGTGAAGGCA +
Preference number: 4 (lower is better)
Translates to: NDPRCLLSSMVGRRCPNPLPFLW*RKGVKA
Trigger: TGCCTTCACGCCCTTCCTGCACCAGAGGAACGGCAA...GGGGTTAGGACAACGCCTTCCCACCATGGAAGACAGCAAGCATCGTGGATCATT
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000091246.11
ENSMUST00000102697.10
CDS-3UTR GCA 90 bp GTCATAGTCTACAGTGGCTGGTTAGCGCTACGGCAGCAACAGAGAAGAAAGCAAGAGAGCGGGCAGCGTTaGCGTTCCTCTGGTGCAGGA +
Preference number: 4 (lower is better)
Translates to: VIVYSGWLALRQQQRRKQESGQR*RSSGAG
Trigger: TCCTGCACCAGAGGAACGGCAACGCTGCCCGCTCTC...TTGCTTTCTTCTCTGTTGCTGCCGTAGCGCTAACCAGCCACTGTAGACTATGAC
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000091246.11
ENSMUST00000102697.10
CDS-3UTR CCA 90 bp GAAACCCAAGGGCAGTTTTTCCCACAGAGCTGGTCTGTACACCACCTTCCAGAAGCGTTGCCGTTCCTCTaGTGCAGGAAGGGCGTGAAG +
Preference number: 4 (lower is better)
Translates to: ETQGQFFPQSWSVHHLPEALPFL*CRKGVK
Trigger: CTTCACGCCCTTCCTGCACCAGAGGAACGGCAACGC...TTCTGGAAGGTGGTGTACAGACCAGCTCTGTGGGAAAAACTGCCCTTGGGTTTC
56% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000091246.11
ENSMUST00000102697.10
CDS-3UTR CCA 90 bp AACAGCCATGGTTTTGATGTATCCACAGGCCGGCAAGATGTGCAGAGGCCACGGGCAAGCTTCTCCATCTaGACCAGGGTGTCCTCTGTG +
Preference number: 4 (lower is better)
Translates to: NSHGFDVSTGRQDVQRPRASFSI*TRVSSV
Trigger: CACAGAGGACACCCTGGTCCAGATGGAGAAGCTTGC...CCGTGGCCTCTGCACATCTTGCCGGCCTGTGGATACATCAAAACCATGGCTGTT
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000091246.11
ENSMUST00000102697.10
CDS-3UTR CCA 90 bp GAAACCCAAGGGCAGTTTTTCCCACAGAGCTGGTCTGTACACCACCTTCCAGAAGAAGCCGGTAAGCTTTaGGGGCTGCCAGCTCCCACA +
Preference number: 4 (lower is better)
Translates to: ETQGQFFPQSWSVHHLPEEAGKL*GLPAPT
Trigger: TGTGGGAGCTGGCAGCCCCCAAAGCTTACCGGCTTC...TTCTGGAAGGTGGTGTACAGACCAGCTCTGTGGGAAAAACTGCCCTTGGGTTTC
56% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000091246.11
ENSMUST00000102697.10
CDS-3UTR CCA 90 bp AAAACAGCCATGGTTTTGATGTATCCACAGGCCGGCAAGATGTGCAGAGGCCACGAAGCCGGTAAGCTTTaGGGGCTGCCAGCTCCCACA +
Preference number: 4 (lower is better)
Translates to: KTAMVLMYPQAGKMCRGHEAGKL*GLPAPT
Trigger: TGTGGGAGCTGGCAGCCCCCAAAGCTTACCGGCTTC...GTGGCCTCTGCACATCTTGCCGGCCTGTGGATACATCAAAACCATGGCTGTTTT
56% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 2 transcripts:
ENSMUST00000091246.11
ENSMUST00000102697.10
CDS-3UTR CCA 90 bp AAAACAGCCATGGTTTTGATGTATCCACAGGCCGGCAAGATGTGCAGAGGCCACGAGCGAGTGGCCGTGTaGACCTCCACGACAACTACG +
Preference number: 4 (lower is better)
Translates to: KTAMVLMYPQAGKMCRGHERVAV*TSTTTT
Trigger: CGTAGTTGTCGTGGAGGTCCACACGGCCACTCGCTC...GTGGCCTCTGCACATCTTGCCGGCCTGTGGATACATCAAAACCATGGCTGTTTT
56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000091246.11
ENSMUST00000102697.10
CDS-3UTR CCA 90 bp GGTTTTGATGTATCCACAGGCCGGCAAGATGTGCAGAGGCCACGGCTGTGCACGTCCACAGACAGGTTCTaGTTGGTCAGAGCTGCTTCA +
Preference number: 4 (lower is better)
Translates to: GFDVSTGRQDVQRPRLCTSTDRF*LVRAAS
Trigger: TGAAGCAGCTCTGACCAACCAGAACCTGTCTGTGGA...CGTGCACAGCCGTGGCCTCTGCACATCTTGCCGGCCTGTGGATACATCAAAACC
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000091246.11
ENSMUST00000102697.10
CDS-3UTR TCA 90 bp GAAACCCAAGGGCAGTTTTTCCCACAGAGCTGGTCTGTACACCACCTTCCAGAACTGCCTCAAACACCTTaGAGGCCTTGGCCTGGAGCT +
Preference number: 4 (lower is better)
Translates to: ETQGQFFPQSWSVHHLPELPQTP*RPWPGA
Trigger: AGCTCCAGGCCAAGGCCTTCAAGGTGTTTGAGGCAG...TTCTGGAAGGTGGTGTACAGACCAGCTCTGTGGGAAAAACTGCCCTTGGGTTTC
54% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000091246.11
ENSMUST00000102697.10
CDS-3UTR TCA 90 bp AGAAACCCAAGGGCAGTTTTTCCCACAGAGCTGGTCTGTACACCACCTTCCAGAGGTGCAGGAAGGGCGTaGAGGCAGTGTTCATCCTCT +
Preference number: 4 (lower is better)
Translates to: RNPRAVFPTELVCTPPSRGAGRA*RQCSSS
Trigger: AGAGGATGAACACTGCCTTCACGCCCTTCCTGCACC...TCTGGAAGGTGGTGTACAGACCAGCTCTGTGGGAAAAACTGCCCTTGGGTTTCT
54% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000091246.11
ENSMUST00000102697.10
CDS-3UTR TCA 90 bp TCAGTTCCCAGCCTTTGTCCTCACGGGGCACAGAACACATCTCGCCAGGTCCTGAGAACTTCAGCAGTTTaGCGTTGTCCTCCTCTGATG +
Preference number: 4 (lower is better)
Translates to: SVPSLCPHGAQNTSRQVLRTSAV*RCPPLM
Trigger: CATCAGAGGAGGACAACGTCAAACTGCTGAAGTTCT...CAGGACCTGGCGAGATGTGTTCTGTGCCCCGTGAGGACAAAGGCTGGGAACTGA
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000091246.11
ENSMUST00000102697.10
CDS-3UTR TCA 90 bp AGGGCCTCACCCCAGAAGTCAGAAACCCAAGGGCAGTTTTTCCCACAGAGCTGGTTCGGACGGTGGACATaGGATGGGACTTGTAGGTTT +
Preference number: 4 (lower is better)
Translates to: RASPQKSETQGQFFPQSWFGRWT*DGTCRF
Trigger: AAACCTACAAGTCCCATCTCATGTCCACCGTCCGAA...CCAGCTCTGTGGGAAAAACTGCCCTTGGGTTTCTGACTTCTGGGGTGAGGCCCT
54% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000091246.11
ENSMUST00000102697.10
CDS-3UTR GCA 90 bp AAAACAGCCATGGTTTTGATGTATCCACAGGCCGGCAAGATGTGCAGAGGCCACGGCTGCTCATCTGAATaGCACCCTCCTCCTCCTCAG +
Preference number: 4 (lower is better)
Translates to: KTAMVLMYPQAGKMCRGHGCSSE*HPPPPQ
Trigger: CTGAGGAGGAGGAGGGTGGCATTCAGATGAGCAGCC...GTGGCCTCTGCACATCTTGCCGGCCTGTGGATACATCAAAACCATGGCTGTTTT
54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000091246.11
ENSMUST00000102697.10
CDS-3UTR GCA 90 bp TGCAAAGGGACCACTGTCTCTGTGTCCCCTACATTTCAACATGGGCTGATAGAGACGATGCTGAAGAGCTaGGGGTGGTTGGGGTGCTGG +
Preference number: 4 (lower is better)
Translates to: CKGTTVSVSPTFQHGLIETMLKS*GWLGCW
Trigger: CCAGCACCCCAACCACCCGCAGCTCTTCAGCATCGT...CTCTATCAGCCCATGTTGAAATGTAGGGGACACAGAGACAGTGGTCCCTTTGCA
54% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 2 transcripts:
ENSMUST00000091246.11
ENSMUST00000102697.10
CDS-3UTR GCA 90 bp GTCATAGTCTACAGTGGCTGGTTAGCGCTACGGCAGCAACAGAGAAGAAAGCAAGTAAGCTTTGGGGGCTaGCAGCTCCCACAGGCTGAG +
Preference number: 4 (lower is better)
Translates to: VIVYSGWLALRQQQRRKQVSFGG*QLPQAE
Trigger: CTCAGCCTGTGGGAGCTGGCAGCCCCCAAAGCTTAC...TTGCTTTCTTCTCTGTTGCTGCCGTAGCGCTAACCAGCCACTGTAGACTATGAC
54% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000091246.11
ENSMUST00000102697.10
CDS-3UTR CCA 90 bp CAGCGCAGTTTGATGCAAAGGGACCACTGTCTCTGTGTCCCCTACATTTCAACATGGAGCTCGCAGAAGTaGCAGAGGGCGACTATGGCG +
Preference number: 4 (lower is better)
Translates to: QRSLMQRDHCLCVPYISTWSSQK*QRATMA
Trigger: CGCCATAGTCGCCCTCTGCCACTTCTGCGAGCTCCA...TGTTGAAATGTAGGGGACACAGAGACAGTGGTCCCTTTGCATCAAACTGCGCTG
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000091246.11
ENSMUST00000102697.10
CDS-3UTR CCA 90 bp TTTCAGTCCATTATCATCAAGGTGGGAACATGGCAGCTTCCAGGCAGGCATGGAATGCTGTACCAGCGCTaGAAGCCTCTGGCCAGGCTG +
Preference number: 4 (lower is better)
Translates to: FQSIIIKVGTWQLPGRHGMLYQR*KPLARL
Trigger: CAGCCTGGCCAGAGGCTTCCAGCGCTGGTACAGCAT...TCCATGCCTGCCTGGAAGCTGCCATGTTCCCACCTTGATGATAATGGACTGAAA
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000102697.10
CDS-3UTR CCA 90 bp GAAACCCAAGGGCAGTTTTTCCCACAGAGCTGGTCTGTACACCACCTTCCAGAATCTGAGGCCAGAACATaGGCAGGGATAGGCACGGGA +
Preference number: 4 (lower is better)
Translates to: ETQGQFFPQSWSVHHLPESEART*AGIGTG
Trigger: TCCCGTGCCTATCCCTGCCCATGTTCTGGCCTCAGA...TTCTGGAAGGTGGTGTACAGACCAGCTCTGTGGGAAAAACTGCCCTTGGGTTTC
54% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000091246.11
ENSMUST00000102697.10
CDS-3UTR CCA 90 bp AGGGCCTCACCCCAGAAGTCAGAAACCCAAGGGCAGTTTTTCCCACAGAGCTGGCCACAGGGCTACCACTaGTCACCACAAACTCATACT +
Preference number: 4 (lower is better)
Translates to: RASPQKSETQGQFFPQSWPQGYH*SPQTHT
Trigger: AGTATGAGTTTGTGGTGACCAGTGGTAGCCCTGTGG...CCAGCTCTGTGGGAAAAACTGCCCTTGGGTTTCTGACTTCTGGGGTGAGGCCCT
54% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000091246.11
ENSMUST00000102697.10
CDS-3UTR CCA 90 bp TCAGTTCCCAGCCTTTGTCCTCACGGGGCACAGAACACATCTCGCCAGGTCCTGCAGACAGGTTCTGGTTaGTCAGAGCTGCTTCAATCT +
Preference number: 4 (lower is better)
Translates to: SVPSLCPHGAQNTSRQVLQTGSG*SELLQS
Trigger: AGATTGAAGCAGCTCTGACCAACCAGAACCTGTCTG...CAGGACCTGGCGAGATGTGTTCTGTGCCCCGTGAGGACAAAGGCTGGGAACTGA
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000091246.11
ENSMUST00000102697.10
CDS-3UTR TCA 90 bp TGCAAAGGGACCACTGTCTCTGTGTCCCCTACATTTCAACATGGGCTGATAGAGCTGCCTCAAACACCTTaGAGGCCTTGGCCTGGAGCT +
Preference number: 4 (lower is better)
Translates to: CKGTTVSVSPTFQHGLIELPQTP*RPWPGA
Trigger: AGCTCCAGGCCAAGGCCTTCAAGGTGTTTGAGGCAG...CTCTATCAGCCCATGTTGAAATGTAGGGGACACAGAGACAGTGGTCCCTTTGCA
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000091246.11
ENSMUST00000102697.10
CDS-3UTR TCA 90 bp TGCAAAGGGACCACTGTCTCTGTGTCCCCTACATTTCAACATGGGCTGATAGAGGGTGCAGGAAGGGCGTaGAGGCAGTGTTCATCCTCT +
Preference number: 4 (lower is better)
Translates to: CKGTTVSVSPTFQHGLIEGAGRA*RQCSSS
Trigger: AGAGGATGAACACTGCCTTCACGCCCTTCCTGCACC...CTCTATCAGCCCATGTTGAAATGTAGGGGACACAGAGACAGTGGTCCCTTTGCA
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000091246.11
ENSMUST00000102697.10
CDS-3UTR TCA 90 bp AACAGCCATGGTTTTGATGTATCCACAGGCCGGCAAGATGTGCAGAGGCCACGGCTTTTCCAGATCACCTaGTTCCCCATGAGGACATGC +
Preference number: 4 (lower is better)
Translates to: NSHGFDVSTGRQDVQRPRLFQIT*FPMRTC
Trigger: GCATGTCCTCATGGGGAATCAGGTGATCTGGAAAAG...CCGTGGCCTCTGCACATCTTGCCGGCCTGTGGATACATCAAAACCATGGCTGTT
53% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 2 transcripts:
ENSMUST00000091246.11
ENSMUST00000102697.10
CDS-3UTR TCA 90 bp AAAACAGCCATGGTTTTGATGTATCCACAGGCCGGCAAGATGTGCAGAGGCCACGACAACTACGAACTCTaGGGCCAGAACATGGGCAGG +
Preference number: 4 (lower is better)
Translates to: KTAMVLMYPQAGKMCRGHDNYEL*GQNMGR
Trigger: CCTGCCCATGTTCTGGCCTCAGAGTTCGTAGTTGTC...GTGGCCTCTGCACATCTTGCCGGCCTGTGGATACATCAAAACCATGGCTGTTTT
53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000091246.11
ENSMUST00000102697.10
CDS-3UTR GCA 90 bp TCTCAGTTCCCAGCCTTTGTCCTCACGGGGCACAGAACACATCTCGCCAGGTCCAACACAAAGCCGTGCTaGTCATCACCAAAGAAGATG +
Preference number: 4 (lower is better)
Translates to: SQFPAFVLTGHRTHLARSNTKPC*SSPKKM
Trigger: CATCTTCTTTGGTGATGAGCAGCACGGCTTTGTGTT...GGACCTGGCGAGATGTGTTCTGTGCCCCGTGAGGACAAAGGCTGGGAACTGAGA
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000091246.11
ENSMUST00000102697.10
CDS-3UTR GCA 90 bp CAGGAGGATTGCTACAAGTCTGGAAGTAGCAGAGGCCACACCATGAGTTCTAAAGTAAGCTTTGGGGGCTaGCAGCTCCCACAGGCTGAG +
Preference number: 4 (lower is better)
Translates to: QEDCYKSGSSRGHTMSSKVSFGG*QLPQAE
Trigger: CTCAGCCTGTGGGAGCTGGCAGCCCCCAAAGCTTAC...TTTAGAACTCATGGTGTGGCCTCTGCTACTTCCAGACTTGTAGCAATCCTCCTG
53% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000091246.11
ENSMUST00000102697.10
CDS-3UTR CCA 90 bp GAAACCCAAGGGCAGTTTTTCCCACAGAGCTGGTCTGTACACCACCTTCCAGAATCAGCCTGCTCAACCTaGTCAGGACTGTCCCCACTT +
Preference number: 4 (lower is better)
Translates to: ETQGQFFPQSWSVHHLPESACST*SGLSPL
Trigger: AAGTGGGGACAGTCCTGACCAGGTTGAGCAGGCTGA...TTCTGGAAGGTGGTGTACAGACCAGCTCTGTGGGAAAAACTGCCCTTGGGTTTC
53% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000091246.11
ENSMUST00000102697.10
CDS-3UTR CCA 90 bp AGAAACCCAAGGGCAGTTTTTCCCACAGAGCTGGTCTGTACACCACCTTCCAGACATCACCAAAGAAGATaGGGCCTTCACGACCAGGGC +
Preference number: 4 (lower is better)
Translates to: RNPRAVFPTELVCTPPSRHHQRR*GLHDQG
Trigger: GCCCTGGTCGTGAAGGCCCCATCTTCTTTGGTGATG...TCTGGAAGGTGGTGTACAGACCAGCTCTGTGGGAAAAACTGCCCTTGGGTTTCT
53% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000091246.11
ENSMUST00000102697.10
CDS-3UTR CCA 90 bp GTCTCTGTGTCCCCTACATTTCAACATGGGCTGATAGAGTCTTACAAGGAGGGTATGCTGTACCAGCGCTaGAAGCCTCTGGCCAGGCTG +
Preference number: 4 (lower is better)
Translates to: VSVSPTFQHGLIESYKEGMLYQR*KPLARL
Trigger: CAGCCTGGCCAGAGGCTTCCAGCGCTGGTACAGCAT...ACCCTCCTTGTAAGACTCTATCAGCCCATGTTGAAATGTAGGGGACACAGAGAC
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000091246.11
ENSMUST00000102697.10
CDS-3UTR CCA 90 bp GTCATAGTCTACAGTGGCTGGTTAGCGCTACGGCAGCAACAGAGAAGAAAGCAACCTCTGGGCACGCTGTaGACATCCAAACTGCTCTGC +
Preference number: 4 (lower is better)
Translates to: VIVYSGWLALRQQQRRKQPLGTL*TSKLLC
Trigger: GCAGAGCAGTTTGGATGTCCACAGCGTGCCCAGAGG...TTGCTTTCTTCTCTGTTGCTGCCGTAGCGCTAACCAGCCACTGTAGACTATGAC
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000091246.11
ENSMUST00000102697.10
CDS-3UTR CCA 90 bp GAAACCCAAGGGCAGTTTTTCCCACAGAGCTGGTCTGTACACCACCTTCCAGAAGCAGTGTTCATCCTCTaGGCACGCTGTGGACATCCA +
Preference number: 4 (lower is better)
Translates to: ETQGQFFPQSWSVHHLPEAVFIL*ARCGHP
Trigger: TGGATGTCCACAGCGTGCCCAGAGGATGAACACTGC...TTCTGGAAGGTGGTGTACAGACCAGCTCTGTGGGAAAAACTGCCCTTGGGTTTC
53% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000091246.11
ENSMUST00000102697.10
CDS-3UTR CCA 90 bp AGGGCCTCACCCCAGAAGTCAGAAACCCAAGGGCAGTTTTTCCCACAGAGCTGGACAAGTTGTCATCACTaGTCAAGGAGGTCAGAGAGC +
Preference number: 4 (lower is better)
Translates to: RASPQKSETQGQFFPQSWTSCHH*SRRSES
Trigger: GCTCTCTGACCTCCTTGACCAGTGATGACAACTTGT...CCAGCTCTGTGGGAAAAACTGCCCTTGGGTTTCTGACTTCTGGGGTGAGGCCCT
53% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000091246.11
ENSMUST00000102697.10
CDS-3UTR CCA 90 bp AACAGCCATGGTTTTGATGTATCCACAGGCCGGCAAGATGTGCAGAGGCCACGGCCACAGGGCTACCACTaGTCACCACAAACTCATACT +
Preference number: 4 (lower is better)
Translates to: NSHGFDVSTGRQDVQRPRPQGYH*SPQTHT
Trigger: AGTATGAGTTTGTGGTGACCAGTGGTAGCCCTGTGG...CCGTGGCCTCTGCACATCTTGCCGGCCTGTGGATACATCAAAACCATGGCTGTT
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000091246.11
ENSMUST00000102697.10
CDS-3UTR GCA 90 bp AACAGCCATGGTTTTGATGTATCCACAGGCCGGCAAGATGTGCAGAGGCCACGGTGTGGACATCCAAACTaGTCTGCCTCAAACACCTTG +
Preference number: 4 (lower is better)
Translates to: NSHGFDVSTGRQDVQRPRCGHPN*SASNTL
Trigger: CAAGGTGTTTGAGGCAGAGCAGTTTGGATGTCCACA...CCGTGGCCTCTGCACATCTTGCCGGCCTGTGGATACATCAAAACCATGGCTGTT
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000091246.11
ENSMUST00000102697.10
CDS-3UTR GCA 90 bp GGTTTTGATGTATCCACAGGCCGGCAAGATGTGCAGAGGCCACGGCTGTGCACGCTGGTTGGTCAGAGCTaGTTCAATCTTATTCAGGAT +
Preference number: 4 (lower is better)
Translates to: GFDVSTGRQDVQRPRLCTLVGQS*FNLIQD
Trigger: ATCCTGAATAAGATTGAAGCAGCTCTGACCAACCAG...CGTGCACAGCCGTGGCCTCTGCACATCTTGCCGGCCTGTGGATACATCAAAACC
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000091246.11
ENSMUST00000102697.10
CDS-3UTR CCA 90 bp GTCATAGTCTACAGTGGCTGGTTAGCGCTACGGCAGCAACAGAGAAGAAAGCAATCAGCCTGCTCAACCTaGTCAGGACTGTCCCCACTT +
Preference number: 4 (lower is better)
Translates to: VIVYSGWLALRQQQRRKQSACST*SGLSPL
Trigger: AAGTGGGGACAGTCCTGACCAGGTTGAGCAGGCTGA...TTGCTTTCTTCTCTGTTGCTGCCGTAGCGCTAACCAGCCACTGTAGACTATGAC
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000091246.11
ENSMUST00000102697.10
CDS-3UTR CCA 90 bp TGCAAAGGGACCACTGTCTCTGTGTCCCCTACATTTCAACATGGGCTGATAGAGCATCACCAAAGAAGATaGGGCCTTCACGACCAGGGC +
Preference number: 4 (lower is better)
Translates to: CKGTTVSVSPTFQHGLIEHHQRR*GLHDQG
Trigger: GCCCTGGTCGTGAAGGCCCCATCTTCTTTGGTGATG...CTCTATCAGCCCATGTTGAAATGTAGGGGACACAGAGACAGTGGTCCCTTTGCA
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000091246.11
ENSMUST00000102697.10
CDS-3UTR CCA 90 bp TTTCAGTCCATTATCATCAAGGTGGGAACATGGCAGCTTCCAGGCAGGCATGGAGCAGTGTTCATCCTCTaGGCACGCTGTGGACATCCA +
Preference number: 4 (lower is better)
Translates to: FQSIIIKVGTWQLPGRHGAVFIL*ARCGHP
Trigger: TGGATGTCCACAGCGTGCCCAGAGGATGAACACTGC...TCCATGCCTGCCTGGAAGCTGCCATGTTCCCACCTTGATGATAATGGACTGAAA
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000102697.10
CDS-3UTR CCA 90 bp TGCAAAGGGACCACTGTCTCTGTGTCCCCTACATTTCAACATGGGCTGATAGAGTCTGTGTGTCCTCCTTaGGGCGACTGTCTACCTTGG +
Preference number: 4 (lower is better)
Translates to: CKGTTVSVSPTFQHGLIESVCPP*GDCLPW
Trigger: CCAAGGTAGACAGTCGCCCCAAGGAGGACACACAGA...CTCTATCAGCCCATGTTGAAATGTAGGGGACACAGAGACAGTGGTCCCTTTGCA
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000091246.11
ENSMUST00000102697.10
CDS-3UTR TCA 90 bp GTCTCTGTGTCCCCTACATTTCAACATGGGCTGATAGAGTCTTACAAGGAGGGTGACAACTACGAACTCTaGGGCCAGAACATGGGCAGG +
Preference number: 4 (lower is better)
Translates to: VSVSPTFQHGLIESYKEGDNYEL*GQNMGR
Trigger: CCTGCCCATGTTCTGGCCTCAGAGTTCGTAGTTGTC...ACCCTCCTTGTAAGACTCTATCAGCCCATGTTGAAATGTAGGGGACACAGAGAC
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000091246.11
ENSMUST00000102697.10
CDS-3UTR TCA 90 bp TTTCAGTCCATTATCATCAAGGTGGGAACATGGCAGCTTCCAGGCAGGCATGGACAAACTCATACTTGCTaGGGGACTGGTCATCCTCGC +
Preference number: 4 (lower is better)
Translates to: FQSIIIKVGTWQLPGRHGQTHTC*GTGHPR
Trigger: GCGAGGATGACCAGTCCCTCAGCAAGTATGAGTTTG...TCCATGCCTGCCTGGAAGCTGCCATGTTCCCACCTTGATGATAATGGACTGAAA
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000102697.10
CDS-3UTR GCA 90 bp CCAGGCAGGCATGGAGCAGGAGGAGCTAAGAGTTCTCCATCTTCATCTGAAGGCCCAGGTTCACATCTCTaGTTTTCCAGATCACCTGAT +
Preference number: 4 (lower is better)
Translates to: PGRHGAGGAKSSPSSSEGPGSHL*FSRSPD
Trigger: ATCAGGTGATCTGGAAAAGCAGAGATGTGAACCTGG...GCCTTCAGATGAAGATGGAGAACTCTTAGCTCCTCCTGCTCCATGCCTGCCTGG
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000102697.10
CDS-3UTR GCA 90 bp AGAAACCCAAGGGCAGTTTTTCCCACAGAGCTGGTCTGTACACCACCTTCCAGAGGGACTTGTAGGTTTTaGTCAGTCCCGTCATCCAGA +
Preference number: 4 (lower is better)
Translates to: RNPRAVFPTELVCTPPSRGTCRF*SVPSSR
Trigger: TCTGGATGACGGGACTGAGCAAAACCTACAAGTCCC...TCTGGAAGGTGGTGTACAGACCAGCTCTGTGGGAAAAACTGCCCTTGGGTTTCT
51% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000091246.11
ENSMUST00000102697.10
CDS-3UTR CCA 90 bp GTCATAGTCTACAGTGGCTGGTTAGCGCTACGGCAGCAACAGAGAAGAAAGCAACCCTTCAGCACCCTCTaGTGTAACAGGAGCTTTCTC +
Preference number: 4 (lower is better)
Translates to: VIVYSGWLALRQQQRRKQPFSTL*CNRSFL
Trigger: GAGAAAGCTCCTGTTACACCAGAGGGTGCTGAAGGG...TTGCTTTCTTCTCTGTTGCTGCCGTAGCGCTAACCAGCCACTGTAGACTATGAC
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000091246.11
ENSMUST00000102697.10
CDS-3UTR CCA 90 bp GTCTCTGTGTCCCCTACATTTCAACATGGGCTGATAGAGTCTTACAAGGAGGGTTACTTGCTGAGGGACTaGTCATCCTCGCACCCAGCA +
Preference number: 4 (lower is better)
Translates to: VSVSPTFQHGLIESYKEGYLLRD*SSSHPA
Trigger: TGCTGGGTGCGAGGATGACCAGTCCCTCAGCAAGTA...ACCCTCCTTGTAAGACTCTATCAGCCCATGTTGAAATGTAGGGGACACAGAGAC
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000091246.11
ENSMUST00000102697.10
CDS-3UTR TCA 90 bp AATGATCCACGATGCTTGCTGTCTTCCATGGTGGGAAGGCGTTGTCCTAACCCCTCTCTTTATCATGACTaGTATAGCCTGGGTGCCCTA +
Preference number: 4 (lower is better)
Translates to: NDPRCLLSSMVGRRCPNPSLYHD*YSLGAL
Trigger: TAGGGCACCCAGGCTATATCAGTCATGATAAAGAGA...GGGGTTAGGACAACGCCTTCCCACCATGGAAGACAGCAAGCATCGTGGATCATT
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000091246.11
ENSMUST00000102697.10
CDS-3UTR TCA 90 bp CAGCGCAGTTTGATGCAAAGGGACCACTGTCTCTGTGTCCCCTACATTTCAACACTTTTCCAGATCACCTaGTTCCCCATGAGGACATGC +
Preference number: 4 (lower is better)
Translates to: QRSLMQRDHCLCVPYISTLFQIT*FPMRTC
Trigger: GCATGTCCTCATGGGGAATCAGGTGATCTGGAAAAG...TGTTGAAATGTAGGGGACACAGAGACAGTGGTCCCTTTGCATCAAACTGCGCTG
50% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 2 transcripts:
ENSMUST00000091246.11
ENSMUST00000102697.10
CDS-3UTR TCA 90 bp GTCTCTGTGTCCCCTACATTTCAACATGGGCTGATAGAGTCTTACAAGGAGGGTCAAACTCATACTTGCTaGGGGACTGGTCATCCTCGC +
Preference number: 4 (lower is better)
Translates to: VSVSPTFQHGLIESYKEGQTHTC*GTGHPR
Trigger: GCGAGGATGACCAGTCCCTCAGCAAGTATGAGTTTG...ACCCTCCTTGTAAGACTCTATCAGCCCATGTTGAAATGTAGGGGACACAGAGAC
50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000091246.11
ENSMUST00000102697.10
CDS-3UTR TCA 90 bp CAGCGCAGTTTGATGCAAAGGGACCACTGTCTCTGTGTCCCCTACATTTCAACATTCGGACGGTGGACATaGGATGGGACTTGTAGGTTT +
Preference number: 4 (lower is better)
Translates to: QRSLMQRDHCLCVPYISTFGRWT*DGTCRF
Trigger: AAACCTACAAGTCCCATCTCATGTCCACCGTCCGAA...TGTTGAAATGTAGGGGACACAGAGACAGTGGTCCCTTTGCATCAAACTGCGCTG
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000091246.11
ENSMUST00000102697.10
CDS-3UTR GCA 90 bp AATGATCCACGATGCTTGCTGTCTTCCATGGTGGGAAGGCGTTGTCCTAACCCCCCAGGTTCACATCTCTaGTTTTCCAGATCACCTGAT +
Preference number: 4 (lower is better)
Translates to: NDPRCLLSSMVGRRCPNPPGSHL*FSRSPD
Trigger: ATCAGGTGATCTGGAAAAGCAGAGATGTGAACCTGG...GGGGTTAGGACAACGCCTTCCCACCATGGAAGACAGCAAGCATCGTGGATCATT
50% GC, longest homopolymer 6 nt, total homopolymer stretches 10 nt.
Matches the following 2 transcripts:
ENSMUST00000091246.11
ENSMUST00000102697.10
CDS-3UTR GCA 90 bp TTTCAGTCCATTATCATCAAGGTGGGAACATGGCAGCTTCCAGGCAGGCATGGAGGGACTTGTAGGTTTTaGTCAGTCCCGTCATCCAGA +
Preference number: 4 (lower is better)
Translates to: FQSIIIKVGTWQLPGRHGGTCRF*SVPSSR
Trigger: TCTGGATGACGGGACTGAGCAAAACCTACAAGTCCC...TCCATGCCTGCCTGGAAGCTGCCATGTTCCCACCTTGATGATAATGGACTGAAA
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000102697.10
CDS-3UTR CCA 90 bp CAGCGCAGTTTGATGCAAAGGGACCACTGTCTCTGTGTCCCCTACATTTCAACAAGGCAGATGAGACATTaGTCCACCACATCCACAGAC +
Preference number: 4 (lower is better)
Translates to: QRSLMQRDHCLCVPYISTRQMRH*STTSTD
Trigger: GTCTGTGGATGTGGTGGACCAATGTCTCATCTGCCT...TGTTGAAATGTAGGGGACACAGAGACAGTGGTCCCTTTGCATCAAACTGCGCTG
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000091246.11
ENSMUST00000102697.10
CDS-3UTR TCA 90 bp CAGGAGGATTGCTACAAGTCTGGAAGTAGCAGAGGCCACACCATGAGTTCTAAATGGTTGGGGTGCTGGTaGCTGACGTACTTAATAGAG +
Preference number: 4 (lower is better)
Translates to: QEDCYKSGSSRGHTMSSKWLGCW*LTYLIE
Trigger: CTCTATTAAGTACGTCAGTCACCAGCACCCCAACCA...TTTAGAACTCATGGTGTGGCCTCTGCTACTTCCAGACTTGTAGCAATCCTCCTG
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000091246.11
ENSMUST00000102697.10
CDS-3UTR TCA 90 bp AGAAACCCAAGGGCAGTTTTTCCCACAGAGCTGGTCTGTACACCACCTTCCAGAATTGTCCCAACTTTCTaGTTCTTCCTCCAAGTCAGC +
Preference number: 4 (lower is better)
Translates to: RNPRAVFPTELVCTPPSRIVPTF*FFLQVS
Trigger: GCTGACTTGGAGGAAGAATCAGAAAGTTGGGACAAT...TCTGGAAGGTGGTGTACAGACCAGCTCTGTGGGAAAAACTGCCCTTGGGTTTCT
49% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000091246.11
ENSMUST00000102697.10
CDS-3UTR TCA 90 bp AAAACAGCCATGGTTTTGATGTATCCACAGGCCGGCAAGATGTGCAGAGGCCACATTGTCCCAACTTTCTaGTTCTTCCTCCAAGTCAGC +
Preference number: 4 (lower is better)
Translates to: KTAMVLMYPQAGKMCRGHIVPTF*FFLQVS
Trigger: GCTGACTTGGAGGAAGAATCAGAAAGTTGGGACAAT...GTGGCCTCTGCACATCTTGCCGGCCTGTGGATACATCAAAACCATGGCTGTTTT
49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000091246.11
ENSMUST00000102697.10
CDS-3UTR TCA 90 bp GTCATAGTCTACAGTGGCTGGTTAGCGCTACGGCAGCAACAGAGAAGAAAGCAAAGAACTTCAGCAGTTTaGCGTTGTCCTCCTCTGATG +
Preference number: 4 (lower is better)
Translates to: VIVYSGWLALRQQQRRKQRTSAV*RCPPLM
Trigger: CATCAGAGGAGGACAACGTCAAACTGCTGAAGTTCT...TTGCTTTCTTCTCTGTTGCTGCCGTAGCGCTAACCAGCCACTGTAGACTATGAC
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000091246.11
ENSMUST00000102697.10
CDS-3UTR GCA 90 bp TTTCAGTCCATTATCATCAAGGTGGGAACATGGCAGCTTCCAGGCAGGCATGGACTGAACACAAAGCCGTaGTGCTCATCACCAAAGAAG +
Preference number: 4 (lower is better)
Translates to: FQSIIIKVGTWQLPGRHGLNTKP*CSSPKK
Trigger: CTTCTTTGGTGATGAGCAGCACGGCTTTGTGTTCAG...TCCATGCCTGCCTGGAAGCTGCCATGTTCCCACCTTGATGATAATGGACTGAAA
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000102697.10
CDS-3UTR GCA 90 bp CAGGAGGATTGCTACAAGTCTGGAAGTAGCAGAGGCCACACCATGAGTTCTAAATTCCCCATGAGGACATaGCAAGCCAACATACGGAAG +
Preference number: 4 (lower is better)
Translates to: QEDCYKSGSSRGHTMSSKFPMRT*QANIRK
Trigger: CTTCCGTATGTTGGCTTGGCATGTCCTCATGGGGAA...TTTAGAACTCATGGTGTGGCCTCTGCTACTTCCAGACTTGTAGCAATCCTCCTG
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000091246.11
ENSMUST00000102697.10
CDS-3UTR GCA 90 bp GTCTCTGTGTCCCCTACATTTCAACATGGGCTGATAGAGTCTTACAAGGAGGGTTTCCCCATGAGGACATaGCAAGCCAACATACGGAAG +
Preference number: 4 (lower is better)
Translates to: VSVSPTFQHGLIESYKEGFPMRT*QANIRK
Trigger: CTTCCGTATGTTGGCTTGGCATGTCCTCATGGGGAA...ACCCTCCTTGTAAGACTCTATCAGCCCATGTTGAAATGTAGGGGACACAGAGAC
49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000091246.11
ENSMUST00000102697.10
CDS-3UTR CCA 90 bp CAGGAGGATTGCTACAAGTCTGGAAGTAGCAGAGGCCACACCATGAGTTCTAAATCCACAGACAGGTTCTaGTTGGTCAGAGCTGCTTCA +
Preference number: 4 (lower is better)
Translates to: QEDCYKSGSSRGHTMSSKSTDRF*LVRAAS
Trigger: TGAAGCAGCTCTGACCAACCAGAACCTGTCTGTGGA...TTTAGAACTCATGGTGTGGCCTCTGCTACTTCCAGACTTGTAGCAATCCTCCTG
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000091246.11
ENSMUST00000102697.10
CDS-3UTR CCA 90 bp CAGGAGGATTGCTACAAGTCTGGAAGTAGCAGAGGCCACACCATGAGTTCTAAAAGGCAGATGAGACATTaGTCCACCACATCCACAGAC +
Preference number: 4 (lower is better)
Translates to: QEDCYKSGSSRGHTMSSKRQMRH*STTSTD
Trigger: GTCTGTGGATGTGGTGGACCAATGTCTCATCTGCCT...TTTAGAACTCATGGTGTGGCCTCTGCTACTTCCAGACTTGTAGCAATCCTCCTG
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000091246.11
ENSMUST00000102697.10
CDS-3UTR TCA 90 bp GTCATAGTCTACAGTGGCTGGTTAGCGCTACGGCAGCAACAGAGAAGAAAGCAATCTCTTTATCATGACTaGTATAGCCTGGGTGCCCTA +
Preference number: 4 (lower is better)
Translates to: VIVYSGWLALRQQQRRKQSLYHD*YSLGAL
Trigger: TAGGGCACCCAGGCTATATCAGTCATGATAAAGAGA...TTGCTTTCTTCTCTGTTGCTGCCGTAGCGCTAACCAGCCACTGTAGACTATGAC
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000091246.11
ENSMUST00000102697.10
CDS-3UTR GCA 90 bp CAGCGCAGTTTGATGCAAAGGGACCACTGTCTCTGTGTCCCCTACATTTCAACAAACACAAAGCCGTGCTaGTCATCACCAAAGAAGATG +
Preference number: 4 (lower is better)
Translates to: QRSLMQRDHCLCVPYISTNTKPC*SSPKKM
Trigger: CATCTTCTTTGGTGATGAGCAGCACGGCTTTGTGTT...TGTTGAAATGTAGGGGACACAGAGACAGTGGTCCCTTTGCATCAAACTGCGCTG
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000091246.11
ENSMUST00000102697.10
CDS-3UTR GCA 90 bp GTCTCTGTGTCCCCTACATTTCAACATGGGCTGATAGAGTCTTACAAGGAGGGTCTGAACACAAAGCCGTaGTGCTCATCACCAAAGAAG +
Preference number: 4 (lower is better)
Translates to: VSVSPTFQHGLIESYKEGLNTKP*CSSPKK
Trigger: CTTCTTTGGTGATGAGCAGCACGGCTTTGTGTTCAG...ACCCTCCTTGTAAGACTCTATCAGCCCATGTTGAAATGTAGGGGACACAGAGAC
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000091246.11
ENSMUST00000102697.10
CDS-3UTR GCA 90 bp GTCTCTGTGTCCCCTACATTTCAACATGGGCTGATAGAGTCTTACAAGGAGGGTTGTGGACATCCAAACTaGTCTGCCTCAAACACCTTG +
Preference number: 4 (lower is better)
Translates to: VSVSPTFQHGLIESYKEGCGHPN*SASNTL
Trigger: CAAGGTGTTTGAGGCAGAGCAGTTTGGATGTCCACA...ACCCTCCTTGTAAGACTCTATCAGCCCATGTTGAAATGTAGGGGACACAGAGAC
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000091246.11
ENSMUST00000102697.10
CDS-3UTR CCA 90 bp CAGGAGGATTGCTACAAGTCTGGAAGTAGCAGAGGCCACACCATGAGTTCTAAAACAAGTTGTCATCACTaGTCAAGGAGGTCAGAGAGC +
Preference number: 4 (lower is better)
Translates to: QEDCYKSGSSRGHTMSSKTSCHH*SRRSES
Trigger: GCTCTCTGACCTCCTTGACCAGTGATGACAACTTGT...TTTAGAACTCATGGTGTGGCCTCTGCTACTTCCAGACTTGTAGCAATCCTCCTG
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000091246.11
ENSMUST00000102697.10
CDS-3UTR CCA 90 bp GTCTCTGTGTCCCCTACATTTCAACATGGGCTGATAGAGTCTTACAAGGAGGGTCAGACAGGTTCTGGTTaGTCAGAGCTGCTTCAATCT +
Preference number: 4 (lower is better)
Translates to: VSVSPTFQHGLIESYKEGQTGSG*SELLQS
Trigger: AGATTGAAGCAGCTCTGACCAACCAGAACCTGTCTG...ACCCTCCTTGTAAGACTCTATCAGCCCATGTTGAAATGTAGGGGACACAGAGAC
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000091246.11
ENSMUST00000102697.10
CDS-3UTR GCA 90 bp GTCATAGTCTACAGTGGCTGGTTAGCGCTACGGCAGCAACAGAGAAGAAAGCAACTGGTTGGTCAGAGCTaGTTCAATCTTATTCAGGAT +
Preference number: 4 (lower is better)
Translates to: VIVYSGWLALRQQQRRKQLVGQS*FNLIQD
Trigger: ATCCTGAATAAGATTGAAGCAGCTCTGACCAACCAG...TTGCTTTCTTCTCTGTTGCTGCCGTAGCGCTAACCAGCCACTGTAGACTATGAC
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000091246.11
ENSMUST00000102697.10
CDS CCA 90 bp ACCGGCAGCCCTCACACATGTCCGACTTCTTGGGCCCCGGGCTGCTaGACTCACTGCTGGCACCCTCGGCTGGGCTGTGGGCACGGACCC +
Preference number: 5 (lower is better)
Translates to: TGSPHTCPTSWAPGC*THCWHPRLGCGHGP
Trigger: GGGTCCGTGCCCACAGCCCAGCCGAGGGTGCCAGCAGTGAGTCCAGCAGCCCGGGGCCCAAGAAGTCGGACATGTGTGAGGGCTGCCGGT
70% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000091246.11
ENSMUST00000102697.10
CDS GCA 90 bp CCTCACACATGTCCGACTTCTTGGGCCCCGGGCTGCTGGACTCACTaGTGGCACCCTCGGCTGGGCTGTGGGCACGGACCCGGCTGCTCA +
Preference number: 5 (lower is better)
Translates to: PHTCPTSWAPGCWTH*WHPRLGCGHGPGCS
Trigger: TGAGCAGCCGGGTCCGTGCCCACAGCCCAGCCGAGGGTGCCAGCAGTGAGTCCAGCAGCCCGGGGCCCAAGAAGTCGGACATGTGTGAGG
69% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000091246.11
ENSMUST00000102697.10
CDS GCA 90 bp GTGACCGGCAGCCCTCACACATGTCCGACTTCTTGGGCCCCGGGCTaGTGGACTCACTGCTGGCACCCTCGGCTGGGCTGTGGGCACGGA +
Preference number: 5 (lower is better)
Translates to: VTGSPHTCPTSWAPG*WTHCWHPRLGCGHG
Trigger: TCCGTGCCCACAGCCCAGCCGAGGGTGCCAGCAGTGAGTCCAGCAGCCCGGGGCCCAAGAAGTCGGACATGTGTGAGGGCTGCCGGTCAC
69% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000091246.11
ENSMUST00000102697.10
CDS CCA 90 bp CTTCTTGGGCCCCGGGCTGCTGGACTCACTGCTGGCACCCTCGGCTaGGCTGTGGGCACGGACCCGGCTGCTCATCTGAATGCCACCCTC +
Preference number: 5 (lower is better)
Translates to: LLGPRAAGLTAGTLG*AVGTDPAAHLNATL
Trigger: GAGGGTGGCATTCAGATGAGCAGCCGGGTCCGTGCCCACAGCCCAGCCGAGGGTGCCAGCAGTGAGTCCAGCAGCCCGGGGCCCAAGAAG
69% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000047706.3
ENSMUST00000091246.11
ENSMUST00000102697.10
CDS CCA 90 bp CACACATGTCCGACTTCTTGGGCCCCGGGCTGCTGGACTCACTGCTaGCACCCTCGGCTGGGCTGTGGGCACGGACCCGGCTGCTCATCT +
Preference number: 5 (lower is better)
Translates to: HTCPTSWAPGCWTHC*HPRLGCGHGPGCSS
Trigger: AGATGAGCAGCCGGGTCCGTGCCCACAGCCCAGCCGAGGGTGCCAGCAGTGAGTCCAGCAGCCCGGGGCCCAAGAAGTCGGACATGTGTG
68% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000047706.3
ENSMUST00000091246.11
ENSMUST00000102697.10
CDS GCA 90 bp CTGGTCAAGGAGGTCAGAGAGCGGGCAGCGTTGCCGTTCCTCTGGTaGAGGAAGGGCGTGAAGGCAGTGTTCATCCTCTGGGCACGCTGT +
Preference number: 5 (lower is better)
Translates to: LVKEVRERAALPFLW*RKGVKAVFILWARC
Trigger: ACAGCGTGCCCAGAGGATGAACACTGCCTTCACGCCCTTCCTGCACCAGAGGAACGGCAACGCTGCCCGCTCTCTGACCTCCTTGACCAG
62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000091246.11
ENSMUST00000102697.10
CDS CCA 90 bp TCACTGGTCAAGGAGGTCAGAGAGCGGGCAGCGTTGCCGTTCCTCTaGTGCAGGAAGGGCGTGAAGGCAGTGTTCATCCTCTGGGCACGC +
Preference number: 5 (lower is better)
Translates to: SLVKEVRERAALPFL*CRKGVKAVFILWAR
Trigger: GCGTGCCCAGAGGATGAACACTGCCTTCACGCCCTTCCTGCACCAGAGGAACGGCAACGCTGCCCGCTCTCTGACCTCCTTGACCAGTGA
62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000091246.11
ENSMUST00000102697.10
CDS CCA 90 bp GGGACTGGTCATCCTCGCACCCAGCAGGGTGGAGGTTTGAGCGAGTaGCCGTGTGGACCTCCACGACAACTACGAACTCTGAGGCCAGAA +
Preference number: 5 (lower is better)
Translates to: GTGHPRTQQGGGLSE*PCGPPRQLRTLRPE
Trigger: TTCTGGCCTCAGAGTTCGTAGTTGTCGTGGAGGTCCACACGGCCACTCGCTCAAACCTCCACCCTGCTGGGTGCGAGGATGACCAGTCCC
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000091246.11
ENSMUST00000102697.10
CDS-3UTR CAA 90 bp AGGGCCTCACCCCAGAAGTCAGAAACCCAAGGGCAGTTTTTCCCACAGAGCTGGAGAGAGCGGGCAGCGTaGCCGTTCCTCTGGTGCAGG +
Preference number: 5 (lower is better)
Translates to: RASPQKSETQGQFFPQSWRERAA*PFLWCR
Trigger: CCTGCACCAGAGGAACGGCAACGCTGCCCGCTCTCT...CCAGCTCTGTGGGAAAAACTGCCCTTGGGTTTCTGACTTCTGGGGTGAGGCCCT
61% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000091246.11
ENSMUST00000102697.10
CDS TCA 90 bp TCAGAGAGCGGGCAGCGTTGCCGTTCCTCTGGTGCAGGAAGGGCGTaGAGGCAGTGTTCATCCTCTGGGCACGCTGTGGACATCCAAACT +
Preference number: 5 (lower is better)
Translates to: SESGQRCRSSGAGRA*RQCSSSGHAVDIQT
Trigger: AGTTTGGATGTCCACAGCGTGCCCAGAGGATGAACACTGCCTTCACGCCCTTCCTGCACCAGAGGAACGGCAACGCTGCCCGCTCTCTGA
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000091246.11
ENSMUST00000102697.10
CDS CCA 90 bp TCATCCTCGCACCCAGCAGGGTGGAGGTTTGAGCGAGTGGCCGTGTaGACCTCCACGACAACTACGAACTCTGAGGCCAGAACATGGGCA +
Preference number: 5 (lower is better)
Translates to: SSSHPAGWRFERVAV*TSTTTTNSEARTWA
Trigger: TGCCCATGTTCTGGCCTCAGAGTTCGTAGTTGTCGTGGAGGTCCACACGGCCACTCGCTCAAACCTCCACCCTGCTGGGTGCGAGGATGA
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000091246.11
ENSMUST00000102697.10
CDS TCA 90 bp CTGCAGCCACAGGGCTACCACTGGTCACCACAAACTCATACTTGCTaGGGGACTGGTCATCCTCGCACCCAGCAGGGTGGAGGTTTGAGC +
Preference number: 5 (lower is better)
Translates to: LQPQGYHWSPQTHTC*GTGHPRTQQGGGLS
Trigger: GCTCAAACCTCCACCCTGCTGGGTGCGAGGATGACCAGTCCCTCAGCAAGTATGAGTTTGTGGTGACCAGTGGTAGCCCTGTGGCTGCAG
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000091246.11
ENSMUST00000102697.10
CDS GCA 90 bp GGGTGTCCTCTGTGGGAGCGCCCTCTAAGAGCTTTTCTGTCAGCCTaGTACCGCATGCCTTCAGGAGCCAGGCAAAGGAAGTGTGCAGAC +
Preference number: 5 (lower is better)
Translates to: GCPLWERPLRAFLSA*YRMPSGARQRKCAD
Trigger: GTCTGCACACTTCCTTTGCCTGGCTCCTGAAGGCATGCGGTAGCAGGCTGACAGAAAAGCTCTTAGAGGGCGCTCCCACAGAGGACACCC
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000091246.11
ENSMUST00000102697.10
CDS CCA 90 bp GCCAGGCAAAGGAAGTGTGCAGACACGCCCACAAGTTGTCATCACTaGTCAAGGAGGTCAGAGAGCGGGCAGCGTTGCCGTTCCTCTGGT +
Preference number: 5 (lower is better)
Translates to: ARQRKCADTPTSCHH*SRRSESGQRCRSSG
Trigger: ACCAGAGGAACGGCAACGCTGCCCGCTCTCTGACCTCCTTGACCAGTGATGACAACTTGTGGGCGTGTCTGCACACTTCCTTTGCCTGGC
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000091246.11
ENSMUST00000102697.10
CDS CCA 90 bp AACTCATACTTGCTGAGGGACTGGTCATCCTCGCACCCAGCAGGGTaGAGGTTTGAGCGAGTGGCCGTGTGGACCTCCACGACAACTACG +
Preference number: 5 (lower is better)
Translates to: NSYLLRDWSSSHPAG*RFERVAVWTSTTTT
Trigger: CGTAGTTGTCGTGGAGGTCCACACGGCCACTCGCTCAAACCTCCACCCTGCTGGGTGCGAGGATGACCAGTCCCTCAGCAAGTATGAGTT
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000091246.11
ENSMUST00000102697.10
CDS CCA 90 bp ACAGGGCTACCACTGGTCACCACAAACTCATACTTGCTGAGGGACTaGTCATCCTCGCACCCAGCAGGGTGGAGGTTTGAGCGAGTGGCC +
Preference number: 5 (lower is better)
Translates to: TGLPLVTTNSYLLRD*SSSHPAGWRFERVA
Trigger: GGCCACTCGCTCAAACCTCCACCCTGCTGGGTGCGAGGATGACCAGTCCCTCAGCAAGTATGAGTTTGTGGTGACCAGTGGTAGCCCTGT
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000091246.11
ENSMUST00000102697.10
CDS-3UTR CAA 90 bp TCTCAGTTCCCAGCCTTTGTCCTCACGGGGCACAGAACACATCTCGCCAGGTCCTCTGCCTCAAACACCTaGAAGGCCTTGGCCTGGAGC +
Preference number: 5 (lower is better)
Translates to: SQFPAFVLTGHRTHLARSSASNT*KALAWS
Trigger: GCTCCAGGCCAAGGCCTTCAAGGTGTTTGAGGCAGA...GGACCTGGCGAGATGTGTTCTGTGCCCCGTGAGGACAAAGGCTGGGAACTGAGA
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000091246.11
ENSMUST00000102697.10
CDS-3UTR CAA 90 bp TCAGTTCCCAGCCTTTGTCCTCACGGGGCACAGAACACATCTCGCCAGGTCCTGTCTGCCTCAAACACCTaGAAGGCCTTGGCCTGGAGC +
Preference number: 5 (lower is better)
Translates to: SVPSLCPHGAQNTSRQVLSASNT*KALAWS
Trigger: GCTCCAGGCCAAGGCCTTCAAGGTGTTTGAGGCAGA...CAGGACCTGGCGAGATGTGTTCTGTGCCCCGTGAGGACAAAGGCTGGGAACTGA
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000091246.11
ENSMUST00000102697.10
CDS TCA 90 bp GGAAGTTGCAGCGATAGGCCTCCTCATACTGGCTGCTGTAAGGGATaGTGCGGACACAGCCCACAGGCAGCATGGTCCGGAGGACTTCAA +
Preference number: 5 (lower is better)
Translates to: GSCSDRPPHTGCCKG*CGHSPQAAWSGGLQ
Trigger: TTGAAGTCCTCCGGACCATGCTGCCTGTGGGCTGTGTCCGCATCATCCCTTACAGCAGCCAGTATGAGGAGGCCTATCGCTGCAACTTCC
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000091246.11
ENSMUST00000102697.10
CDS CCA 90 bp GTGCAGGAAGGGCGTGAAGGCAGTGTTCATCCTCTGGGCACGCTGTaGACATCCAAACTGCTCTGCCTCAAACACCTTGAAGGCCTTGGC +
Preference number: 5 (lower is better)
Translates to: VQEGREGSVHPLGTL*TSKLLCLKHLEGLG
Trigger: GCCAAGGCCTTCAAGGTGTTTGAGGCAGAGCAGTTTGGATGTCCACAGCGTGCCCAGAGGATGAACACTGCCTTCACGCCCTTCCTGCAC
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000091246.11
ENSMUST00000102697.10
CDS CCA 90 bp CCGTTCCTCTGGTGCAGGAAGGGCGTGAAGGCAGTGTTCATCCTCTaGGCACGCTGTGGACATCCAAACTGCTCTGCCTCAAACACCTTG +
Preference number: 5 (lower is better)
Translates to: PFLWCRKGVKAVFIL*ARCGHPNCSASNTL
Trigger: CAAGGTGTTTGAGGCAGAGCAGTTTGGATGTCCACAGCGTGCCCAGAGGATGAACACTGCCTTCACGCCCTTCCTGCACCAGAGGAACGG
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000091246.11
ENSMUST00000102697.10
CDS CCA 90 bp CCTCCAAGTCAGCAAGCTTCTCCATCTGGACCAGGGTGTCCTCTGTaGGAGCGCCCTCTAAGAGCTTTTCTGTCAGCCTGCTACCGCATG +
Preference number: 5 (lower is better)
Translates to: PPSQQASPSGPGCPL*ERPLRAFLSACYRM
Trigger: CATGCGGTAGCAGGCTGACAGAAAAGCTCTTAGAGGGCGCTCCCACAGAGGACACCCTGGTCCAGATGGAGAAGCTTGCTGACTTGGAGG
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000091246.11
ENSMUST00000102697.10
CDS GCA 90 bp GTGAAGGCAGTGTTCATCCTCTGGGCACGCTGTGGACATCCAAACTaGTCTGCCTCAAACACCTTGAAGGCCTTGGCCTGGAGCTCACTG +
Preference number: 5 (lower is better)
Translates to: VKAVFILWARCGHPN*SASNTLKALAWSSL
Trigger: CAGTGAGCTCCAGGCCAAGGCCTTCAAGGTGTTTGAGGCAGAGCAGTTTGGATGTCCACAGCGTGCCCAGAGGATGAACACTGCCTTCAC
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000091246.11
ENSMUST00000102697.10
CDS-3UTR CAA 90 bp AGGGCCTCACCCCAGAAGTCAGAAACCCAAGGGCAGTTTTTCCCACAGAGCTGGCTGGCCAGGCTGTCTTaGATGAAGAAGGTGTGGCTG +
Preference number: 5 (lower is better)
Translates to: RASPQKSETQGQFFPQSWLARLS*MKKVWL
Trigger: CAGCCACACCTTCTTCATCAAAGACAGCCTGGCCAG...CCAGCTCTGTGGGAAAAACTGCCCTTGGGTTTCTGACTTCTGGGGTGAGGCCCT
57% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000091246.11
ENSMUST00000102697.10
CDS-3UTR CAA 90 bp TTTCAGTCCATTATCATCAAGGTGGGAACATGGCAGCTTCCAGGCAGGCATGGAAGAGAGCGGGCAGCGTaGCCGTTCCTCTGGTGCAGG +
Preference number: 5 (lower is better)
Translates to: FQSIIIKVGTWQLPGRHGRERAA*PFLWCR
Trigger: CCTGCACCAGAGGAACGGCAACGCTGCCCGCTCTCT...TCCATGCCTGCCTGGAAGCTGCCATGTTCCCACCTTGATGATAATGGACTGAAA
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000102697.10
CDS-3UTR CAA 90 bp TCAGTTCCCAGCCTTTGTCCTCACGGGGCACAGAACACATCTCGCCAGGTCCTGAGACACGCCCACAAGTaGTCATCACTGGTCAAGGAG +
Preference number: 5 (lower is better)
Translates to: SVPSLCPHGAQNTSRQVLRHAHK*SSLVKE
Trigger: CTCCTTGACCAGTGATGACAACTTGTGGGCGTGTCT...CAGGACCTGGCGAGATGTGTTCTGTGCCCCGTGAGGACAAAGGCTGGGAACTGA
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000091246.11
ENSMUST00000102697.10
CDS-3UTR CAA 90 bp AACAGCCATGGTTTTGATGTATCCACAGGCCGGCAAGATGTGCAGAGGCCACGGTTCTGTGTGTCCTCCTaGGGGCGACTGTCTACCTTG +
Preference number: 5 (lower is better)
Translates to: NSHGFDVSTGRQDVQRPRFCVSS*GRLSTL
Trigger: CAAGGTAGACAGTCGCCCCAAGGAGGACACACAGAA...CCGTGGCCTCTGCACATCTTGCCGGCCTGTGGATACATCAAAACCATGGCTGTT
56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000091246.11
ENSMUST00000102697.10
CDS TCA 90 bp GCGGACACAGCCCACAGGCAGCATGGTCCGGAGGACTTCAAACGCTaGATGGACCAGGTTCACATCTCTGCTTTTCCAGATCACCTGATT +
Preference number: 5 (lower is better)
Translates to: ADTAHRQHGPEDFKR*MDQVHISAFPDHLI
Trigger: AATCAGGTGATCTGGAAAAGCAGAGATGTGAACCTGGTCCATTCAGCGTTTGAAGTCCTCCGGACCATGCTGCCTGTGGGCTGTGTCCGC
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000091246.11
ENSMUST00000102697.10
CDS GCA 90 bp GCCAGGCTGTCTTTGATGAAGAAGGTGTGGCTGAACACAAAGCCGTaGTGCTCATCACCAAAGAAGATGGGGCCTTCACGACCAGGGCAT +
Preference number: 5 (lower is better)
Translates to: ARLSLMKKVWLNTKP*CSSPKKMGPSRPGH
Trigger: ATGCCCTGGTCGTGAAGGCCCCATCTTCTTTGGTGATGAGCAGCACGGCTTTGTGTTCAGCCACACCTTCTTCATCAAAGACAGCCTGGC
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000091246.11
ENSMUST00000102697.10
CDS GCA 90 bp TGTCTCATGTGTCGAAGAGACTTGAAGCCGGTAAGCTTTGGGGGCTaGCAGCTCCCACAGGCTGAGAGAAAGGATGACTCTGTTGGGCAA +
Preference number: 5 (lower is better)
Translates to: CLMCRRDLKPVSFGG*QLPQAERKDDSVGQ
Trigger: TTGCCCAACAGAGTCATCCTTTCTCTCAGCCTGTGGGAGCTGGCAGCCCCCAAAGCTTACCGGCTTCAAGTCTCTTCGACACATGAGACA
54% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000091246.11
ENSMUST00000102697.10
CDS-3UTR CAA 90 bp CTCCAACAACAAAACCTCAGAGGCAGACTGATGGACTCCTCTCAGTTCCCAGCCTTCTGTGTGTCCTCCTaGGGGCGACTGTCTACCTTG +
Preference number: 5 (lower is better)
Translates to: LQQQNLRGRLMDSSQFPAFCVSS*GRLSTL
Trigger: CAAGGTAGACAGTCGCCCCAAGGAGGACACACAGAA...GGCTGGGAACTGAGAGGAGTCCATCAGTCTGCCTCTGAGGTTTTGTTGTTGGAG
54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000091246.11
ENSMUST00000102697.10
CDS GCA 90 bp AGGCTGTCTTTGATGAAGAAGGTGTGGCTGAACACAAAGCCGTGCTaGTCATCACCAAAGAAGATGGGGCCTTCACGACCAGGGCATACC +
Preference number: 5 (lower is better)
Translates to: RLSLMKKVWLNTKPC*SSPKKMGPSRPGHT
Trigger: GGTATGCCCTGGTCGTGAAGGCCCCATCTTCTTTGGTGATGAGCAGCACGGCTTTGTGTTCAGCCACACCTTCTTCATCAAAGACAGCCT
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000091246.11
ENSMUST00000102697.10
CDS TCA 90 bp GGACCAGGTTCACATCTCTGCTTTTCCAGATCACCTGATTCCCCATaGGGACATGCCAAGCCAACATACGGAAGGATGGAGCACCCAAGA +
Preference number: 5 (lower is better)
Translates to: GPGSHLCFSRSPDSP*GHAKPTYGRMEHPR
Trigger: TCTTGGGTGCTCCATCCTTCCGTATGTTGGCTTGGCATGTCCTCATGGGGAATCAGGTGATCTGGAAAAGCAGAGATGTGAACCTGGTCC
52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000091246.11
ENSMUST00000102697.10
CDS CCA 90 bp TCCCAACTTTCTGATTCTTCCTCCAAGTCAGCAAGCTTCTCCATCTaGACCAGGGTGTCCTCTGTGGGAGCGCCCTCTAAGAGCTTTTCT +
Preference number: 5 (lower is better)
Translates to: SQLSDSSSKSASFSI*TRVSSVGAPSKSFS
Trigger: AGAAAAGCTCTTAGAGGGCGCTCCCACAGAGGACACCCTGGTCCAGATGGAGAAGCTTGCTGACTTGGAGGAAGAATCAGAAAGTTGGGA
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000091246.11
ENSMUST00000102697.10
CDS-3UTR CAA 90 bp CAGCGCAGTTTGATGCAAAGGGACCACTGTCTCTGTGTCCCCTACATTTCAACAAACACCTTGAAGGCCTaGGCCTGGAGCTCACTGATG +
Preference number: 5 (lower is better)
Translates to: QRSLMQRDHCLCVPYISTNTLKA*AWSSLM
Trigger: CATCAGTGAGCTCCAGGCCAAGGCCTTCAAGGTGTT...TGTTGAAATGTAGGGGACACAGAGACAGTGGTCCCTTTGCATCAAACTGCGCTG
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000091246.11
ENSMUST00000102697.10
CDS-3UTR CAA 90 bp AGAAACCCAAGGGCAGTTTTTCCCACAGAGCTGGTCTGTACACCACCTTCCAGAGAGGCAGATGAGACATaGGTCCACCACATCCACAGA +
Preference number: 5 (lower is better)
Translates to: RNPRAVFPTELVCTPPSREADET*VHHIHR
Trigger: TCTGTGGATGTGGTGGACCAATGTCTCATCTGCCTC...TCTGGAAGGTGGTGTACAGACCAGCTCTGTGGGAAAAACTGCCCTTGGGTTTCT
52% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000091246.11
ENSMUST00000102697.10
CDS TCA 90 bp ACTTGTAGGTTTTGCTCAGTCCCGTCATCCAGAACTTCAGCAGTTTaGCGTTGTCCTCCTCTGATGCGCCTAGGACGCTTAGGAGCTTCT +
Preference number: 5 (lower is better)
Translates to: TCRFCSVPSSRTSAV*RCPPLMRLGRLGAS
Trigger: AGAAGCTCCTAAGCGTCCTAGGCGCATCAGAGGAGGACAACGTCAAACTGCTGAAGTTCTGGATGACGGGACTGAGCAAAACCTACAAGT
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000091246.11
ENSMUST00000102697.10
CDS-3UTR CAA 90 bp GTCTCTGTGTCCCCTACATTTCAACATGGGCTGATAGAGTCTTACAAGGAGGGTCTGGCCAGGCTGTCTTaGATGAAGAAGGTGTGGCTG +
Preference number: 5 (lower is better)
Translates to: VSVSPTFQHGLIESYKEGLARLS*MKKVWL
Trigger: CAGCCACACCTTCTTCATCAAAGACAGCCTGGCCAG...ACCCTCCTTGTAAGACTCTATCAGCCCATGTTGAAATGTAGGGGACACAGAGAC
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000091246.11
ENSMUST00000102697.10
CDS-3UTR CAA 90 bp AGAAACCCAAGGGCAGTTTTTCCCACAGAGCTGGTCTGTACACCACCTTCCAGAACCACAAACTCATACTaGCTGAGGGACTGGTCATCC +
Preference number: 5 (lower is better)
Translates to: RNPRAVFPTELVCTPPSRTTNSY*LRDWSS
Trigger: GGATGACCAGTCCCTCAGCAAGTATGAGTTTGTGGT...TCTGGAAGGTGGTGTACAGACCAGCTCTGTGGGAAAAACTGCCCTTGGGTTTCT
51% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000091246.11
ENSMUST00000102697.10
CDS-3UTR CAA 90 bp AAAACAGCCATGGTTTTGATGTATCCACAGGCCGGCAAGATGTGCAGAGGCCACACAGACAGGTTCTGGTaGGTCAGAGCTGCTTCAATC +
Preference number: 5 (lower is better)
Translates to: KTAMVLMYPQAGKMCRGHTDRFW*VRAASI
Trigger: GATTGAAGCAGCTCTGACCAACCAGAACCTGTCTGT...GTGGCCTCTGCACATCTTGCCGGCCTGTGGATACATCAAAACCATGGCTGTTTT
51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000091246.11
ENSMUST00000102697.10
CDS-3UTR CAA 90 bp GTCATAGTCTACAGTGGCTGGTTAGCGCTACGGCAGCAACAGAGAAGAAAGCAAGAGGCAGATGAGACATaGGTCCACCACATCCACAGA +
Preference number: 5 (lower is better)
Translates to: VIVYSGWLALRQQQRRKQEADET*VHHIHR
Trigger: TCTGTGGATGTGGTGGACCAATGTCTCATCTGCCTC...TTGCTTTCTTCTCTGTTGCTGCCGTAGCGCTAACCAGCCACTGTAGACTATGAC
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000091246.11
ENSMUST00000102697.10
CDS TCA 90 bp AACGCTGAATGGACCAGGTTCACATCTCTGCTTTTCCAGATCACCTaGTTCCCCATGAGGACATGCCAAGCCAACATACGGAAGGATGGA +
Preference number: 5 (lower is better)
Translates to: NAEWTRFTSLLFQIT*FPMRTCQANIRKDG
Trigger: TCCATCCTTCCGTATGTTGGCTTGGCATGTCCTCATGGGGAATCAGGTGATCTGGAAAAGCAGAGATGTGAACCTGGTCCATTCAGCGTT
50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000091246.11
ENSMUST00000102697.10
CDS CCA 90 bp TTGAGGCAGATGAGACATTGGTCCACCACATCCACAGACAGGTTCTaGTTGGTCAGAGCTGCTTCAATCTTATTCAGGATAGTGGGCCCA +
Preference number: 5 (lower is better)
Translates to: LRQMRHWSTTSTDRF*LVRAASILFRIVGP
Trigger: TGGGCCCACTATCCTGAATAAGATTGAAGCAGCTCTGACCAACCAGAACCTGTCTGTGGATGTGGTGGACCAATGTCTCATCTGCCTCAA
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000091246.11
ENSMUST00000102697.10
CDS-3UTR CAA 90 bp TGCAAAGGGACCACTGTCTCTGTGTCCCCTACATTTCAACATGGGCTGATAGAGACAGACAGGTTCTGGTaGGTCAGAGCTGCTTCAATC +
Preference number: 5 (lower is better)
Translates to: CKGTTVSVSPTFQHGLIETDRFW*VRAASI
Trigger: GATTGAAGCAGCTCTGACCAACCAGAACCTGTCTGT...CTCTATCAGCCCATGTTGAAATGTAGGGGACACAGAGACAGTGGTCCCTTTGCA
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000091246.11
ENSMUST00000102697.10
CDS-3UTR CAA 90 bp AACAGCCATGGTTTTGATGTATCCACAGGCCGGCAAGATGTGCAGAGGCCACGGAACAGGACTTTCACTTaGTTCATCCATTCCTCCTTG +
Preference number: 5 (lower is better)
Translates to: NSHGFDVSTGRQDVQRPRNRTFT*FIHSSL
Trigger: CAAGGAGGAATGGATGAACAAAGTGAAAGTCCTGTT...CCGTGGCCTCTGCACATCTTGCCGGCCTGTGGATACATCAAAACCATGGCTGTT
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000091246.11
ENSMUST00000102697.10
CDS CCA 90 bp ACTTTCACTTTGTTCATCCATTCCTCCTTGAGGCAGATGAGACATTaGTCCACCACATCCACAGACAGGTTCTGGTTGGTCAGAGCTGCT +
Preference number: 5 (lower is better)
Translates to: TFTLFIHSSLRQMRH*STTSTDRFWLVRAA
Trigger: AGCAGCTCTGACCAACCAGAACCTGTCTGTGGATGTGGTGGACCAATGTCTCATCTGCCTCAAGGAGGAATGGATGAACAAAGTGAAAGT
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000091246.11
ENSMUST00000102697.10
CDS-3UTR CAA 90 bp GTCTCTGTGTCCCCTACATTTCAACATGGGCTGATAGAGTCTTACAAGGAGGGTACCACAAACTCATACTaGCTGAGGGACTGGTCATCC +
Preference number: 5 (lower is better)
Translates to: VSVSPTFQHGLIESYKEGTTNSY*LRDWSS
Trigger: GGATGACCAGTCCCTCAGCAAGTATGAGTTTGTGGT...ACCCTCCTTGTAAGACTCTATCAGCCCATGTTGAAATGTAGGGGACACAGAGAC
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000091246.11
ENSMUST00000102697.10
CDS-3UTR CAA 90 bp AATGATCCACGATGCTTGCTGTCTTCCATGGTGGGAAGGCGTTGTCCTAACCCCAACAGGACTTTCACTTaGTTCATCCATTCCTCCTTG +
Preference number: 5 (lower is better)
Translates to: NDPRCLLSSMVGRRCPNPNRTFT*FIHSSL
Trigger: CAAGGAGGAATGGATGAACAAAGTGAAAGTCCTGTT...GGGGTTAGGACAACGCCTTCCCACCATGGAAGACAGCAAGCATCGTGGATCATT
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000091246.11
ENSMUST00000102697.10
CDS-3UTR CAA 90 bp TGCAAAGGGACCACTGTCTCTGTGTCCCCTACATTTCAACATGGGCTGATAGAGCAGAACTTCAGCAGTTaGACGTTGTCCTCCTCTGAT +
Preference number: 5 (lower is better)
Translates to: CKGTTVSVSPTFQHGLIEQNFSS*TLSSSD
Trigger: ATCAGAGGAGGACAACGTCAAACTGCTGAAGTTCTG...CTCTATCAGCCCATGTTGAAATGTAGGGGACACAGAGACAGTGGTCCCTTTGCA
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000091246.11
ENSMUST00000102697.10
CDS-3UTR CAA 90 bp CAGGAGGATTGCTACAAGTCTGGAAGTAGCAGAGGCCACACCATGAGTTCTAAACAGAACTTCAGCAGTTaGACGTTGTCCTCCTCTGAT +
Preference number: 5 (lower is better)
Translates to: QEDCYKSGSSRGHTMSSKQNFSS*TLSSSD
Trigger: ATCAGAGGAGGACAACGTCAAACTGCTGAAGTTCTG...TTTAGAACTCATGGTGTGGCCTCTGCTACTTCCAGACTTGTAGCAATCCTCCTG
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000091246.11
ENSMUST00000102697.10
CDS CCA 72 bp CCCCGGGCTGCTGGACTCACTGCTGGCACCCTCGGCTaGGCTGTGGGCACGGACCCGGCTGCTCATCTGAAT +
Preference number: 6 (lower is better)
Translates to: PRAAGLTAGTLG*AVGTDPAAHLN
Trigger: ATTCAGATGAGCAGCCGGGTCCGTGCCCACAGCCCAGCCGAGGGTGCCAGCAGTGAGTCCAGCAGCCCGGGG
69% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000047706.3
ENSMUST00000091246.11
ENSMUST00000102697.10
CDS CCA 72 bp GGGCATACCTCACAGCTCAGGCTCCGGACACAGGCCTaGCGGACGATGCTGAAGAGCTGCGGGTGGTTGGGG +
Preference number: 6 (lower is better)
Translates to: GHTSQLRLRTQA*RTMLKSCGWLG
Trigger: CCCCAACCACCCGCAGCTCTTCAGCATCGTCCGCCAGGCCTGTGTCCGGAGCCTGAGCTGTGAGGTATGCCC
67% GC, longest homopolymer 4 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000091246.11
ENSMUST00000102697.10
CDS CAA 72 bp GCAAGTGACCGGCAGCCCTCACACATGTCCGACTTCTaGGGCCCCGGGCTGCTGGACTCACTGCTGGCACCC +
Preference number: 6 (lower is better)
Translates to: ASDRQPSHMSDF*GPGLLDSLLAP
Trigger: GGGTGCCAGCAGTGAGTCCAGCAGCCCGGGGCCCAAGAAGTCGGACATGTGTGAGGGCTGCCGGTCACTTGC
67% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000091246.11
ENSMUST00000102697.10
CDS TCA 72 bp GGGCAGCGTTGCCGTTCCTCTGGTGCAGGAAGGGCGTaGAGGCAGTGTTCATCCTCTGGGCACGCTGTGGAC +
Preference number: 6 (lower is better)
Translates to: GQRCRSSGAGRA*RQCSSSGHAVD
Trigger: GTCCACAGCGTGCCCAGAGGATGAACACTGCCTTCACGCCCTTCCTGCACCAGAGGAACGGCAACGCTGCCC
64% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000091246.11
ENSMUST00000102697.10
CDS CCA 72 bp TTGCTGAGGGACTGGTCATCCTCGCACCCAGCAGGGTaGAGGTTTGAGCGAGTGGCCGTGTGGACCTCCACG +
Preference number: 6 (lower is better)
Translates to: LLRDWSSSHPAG*RFERVAVWTST
Trigger: CGTGGAGGTCCACACGGCCACTCGCTCAAACCTCCACCCTGCTGGGTGCGAGGATGACCAGTCCCTCAGCAA
64% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000091246.11
ENSMUST00000102697.10
CDS TCA 72 bp GGACTGGTCATCCTCGCACCCAGCAGGGTGGAGGTTTaGGCGAGTGGCCGTGTGGACCTCCACGACAACTAC +
Preference number: 6 (lower is better)
Translates to: GLVILAPSRVEV*ASGRVDLHDNY
Trigger: GTAGTTGTCGTGGAGGTCCACACGGCCACTCGCTCAAACCTCCACCCTGCTGGGTGCGAGGATGACCAGTCC
62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000091246.11
ENSMUST00000102697.10
CDS GCA 72 bp GAGGTCAGAGAGCGGGCAGCGTTGCCGTTCCTCTGGTaGAGGAAGGGCGTGAAGGCAGTGTTCATCCTCTGG +
Preference number: 6 (lower is better)
Translates to: EVRERAALPFLW*RKGVKAVFILW
Trigger: CCAGAGGATGAACACTGCCTTCACGCCCTTCCTGCACCAGAGGAACGGCAACGCTGCCCGCTCTCTGACCTC
62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000091246.11
ENSMUST00000102697.10
CDS CCA 72 bp TGTAGAACTTCCGTGCAGAAGAGCGTGCGGGGGCCATaGAGCTCGCAGAAGTGGCAGAGGGCGACTATGGCG +
Preference number: 6 (lower is better)
Translates to: CRTSVQKSVRGP*SSQKWQRATMA
Trigger: CGCCATAGTCGCCCTCTGCCACTTCTGCGAGCTCCATGGCCCCCGCACGCTCTTCTGCACGGAAGTTCTACA
62% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000047706.3
ENSMUST00000091246.11
ENSMUST00000102697.10
CDS CAA 72 bp GGGACTGGTCATCCTCGCACCCAGCAGGGTGGAGGTTaGAGCGAGTGGCCGTGTGGACCTCCACGACAACTA +
Preference number: 6 (lower is better)
Translates to: GTGHPRTQQGGG*SEWPCGPPRQL
Trigger: TAGTTGTCGTGGAGGTCCACACGGCCACTCGCTCAAACCTCCACCCTGCTGGGTGCGAGGATGACCAGTCCC
62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000091246.11
ENSMUST00000102697.10
CDS TCA 72 bp AGTGGCCGTGTGGACCTCCACGACAACTACGAACTCTaGGGCCAGAACATGGGCAGGGATAGGCACGGGAGG +
Preference number: 6 (lower is better)
Translates to: SGRVDLHDNYEL*GQNMGRDRHGR
Trigger: CCTCCCGTGCCTATCCCTGCCCATGTTCTGGCCTCAGAGTTCGTAGTTGTCGTGGAGGTCCACACGGCCACT
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000091246.11
ENSMUST00000102697.10
CDS CCA 72 bp AAGGAGGTCAGAGAGCGGGCAGCGTTGCCGTTCCTCTaGTGCAGGAAGGGCGTGAAGGCAGTGTTCATCCTC +
Preference number: 6 (lower is better)
Translates to: KEVRERAALPFL*CRKGVKAVFIL
Trigger: GAGGATGAACACTGCCTTCACGCCCTTCCTGCACCAGAGGAACGGCAACGCTGCCCGCTCTCTGACCTCCTT
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000091246.11
ENSMUST00000102697.10
CDS CCA 72 bp CACCCAGCAGGGTGGAGGTTTGAGCGAGTGGCCGTGTaGACCTCCACGACAACTACGAACTCTGAGGCCAGA +
Preference number: 6 (lower is better)
Translates to: HPAGWRFERVAV*TSTTTTNSEAR
Trigger: TCTGGCCTCAGAGTTCGTAGTTGTCGTGGAGGTCCACACGGCCACTCGCTCAAACCTCCACCCTGCTGGGTG
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000091246.11
ENSMUST00000102697.10
CDS CCA 72 bp CATCCTCGCACCCAGCAGGGTGGAGGTTTGAGCGAGTaGCCGTGTGGACCTCCACGACAACTACGAACTCTG +
Preference number: 6 (lower is better)
Translates to: HPRTQQGGGLSE*PCGPPRQLRTL
Trigger: CAGAGTTCGTAGTTGTCGTGGAGGTCCACACGGCCACTCGCTCAAACCTCCACCCTGCTGGGTGCGAGGATG
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000091246.11
ENSMUST00000102697.10
CDS TCA 72 bp AGCGATAGGCCTCCTCATACTGGCTGCTGTAAGGGATaGTGCGGACACAGCCCACAGGCAGCATGGTCCGGA +
Preference number: 6 (lower is better)
Translates to: SDRPPHTGCCKG*CGHSPQAAWSG
Trigger: TCCGGACCATGCTGCCTGTGGGCTGTGTCCGCATCATCCCTTACAGCAGCCAGTATGAGGAGGCCTATCGCT
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000091246.11
ENSMUST00000102697.10
CDS CCA 72 bp AACTGCTCTGCCTCAAACACCTTGAAGGCCTTGGCCTaGAGCTCACTGATGATGCCGCGGATCCTCCCCAGC +
Preference number: 6 (lower is better)
Translates to: NCSASNTLKALA*SSLMMPRILPS
Trigger: GCTGGGGAGGATCCGCGGCATCATCAGTGAGCTCCAGGCCAAGGCCTTCAAGGTGTTTGAGGCAGAGCAGTT
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000091246.11
ENSMUST00000102697.10
CDS CAA 72 bp GCCACAGGGCTACCACTGGTCACCACAAACTCATACTaGCTGAGGGACTGGTCATCCTCGCACCCAGCAGGG +
Preference number: 6 (lower is better)
Translates to: ATGLPLVTTNSY*LRDWSSSHPAG
Trigger: CCCTGCTGGGTGCGAGGATGACCAGTCCCTCAGCAAGTATGAGTTTGTGGTGACCAGTGGTAGCCCTGTGGC
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000091246.11
ENSMUST00000102697.10
CDS CAA 90 bp CGGAAGGATGGAGCACCCAAGACCTGTCTCATGTGTCGAAGAGACTaGAAGCCGGTAAGCTTTGGGGGCTGCCAGCTCCCACAGGCTGAG +
Preference number: 6 (lower is better)
Translates to: RKDGAPKTCLMCRRD*KPVSFGGCQLPQAE
Trigger: CTCAGCCTGTGGGAGCTGGCAGCCCCCAAAGCTTACCGGCTTCAAGTCTCTTCGACACATGAGACAGGTCTTGGGTGCTCCATCCTTCCG
59% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000091246.11
ENSMUST00000102697.10
CDS CAA 90 bp CTGTCTGCAGCCACAGGGCTACCACTGGTCACCACAAACTCATACTaGCTGAGGGACTGGTCATCCTCGCACCCAGCAGGGTGGAGGTTT +
Preference number: 6 (lower is better)
Translates to: LSAATGLPLVTTNSY*LRDWSSSHPAGWRF
Trigger: AAACCTCCACCCTGCTGGGTGCGAGGATGACCAGTCCCTCAGCAAGTATGAGTTTGTGGTGACCAGTGGTAGCCCTGTGGCTGCAGACAG
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000091246.11
ENSMUST00000102697.10
CDS TCA 72 bp CAGGGCTACCACTGGTCACCACAAACTCATACTTGCTaGGGGACTGGTCATCCTCGCACCCAGCAGGGTGGA +
Preference number: 6 (lower is better)
Translates to: QGYHWSPQTHTC*GTGHPRTQQGG
Trigger: TCCACCCTGCTGGGTGCGAGGATGACCAGTCCCTCAGCAAGTATGAGTTTGTGGTGACCAGTGGTAGCCCTG
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000091246.11
ENSMUST00000102697.10
CDS GCA 72 bp CATCCTCTGGGCACGCTGTGGACATCCAAACTGCTCTaGCTCAAACACCTTGAAGGCCTTGGCCTGGAGCTC +
Preference number: 6 (lower is better)
Translates to: HPLGTLWTSKLL*LKHLEGLGLEL
Trigger: GAGCTCCAGGCCAAGGCCTTCAAGGTGTTTGAGGCAGAGCAGTTTGGATGTCCACAGCGTGCCCAGAGGATG
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000091246.11
ENSMUST00000102697.10
CDS CCA 72 bp TGGTGCAGGAAGGGCGTGAAGGCAGTGTTCATCCTCTaGGCACGCTGTGGACATCCAAACTGCTCTGCCTCA +
Preference number: 6 (lower is better)
Translates to: WCRKGVKAVFIL*ARCGHPNCSAS
Trigger: TGAGGCAGAGCAGTTTGGATGTCCACAGCGTGCCCAGAGGATGAACACTGCCTTCACGCCCTTCCTGCACCA
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000091246.11
ENSMUST00000102697.10
CDS CCA 72 bp AGGAAGTGTGCAGACACGCCCACAAGTTGTCATCACTaGTCAAGGAGGTCAGAGAGCGGGCAGCGTTGCCGT +
Preference number: 6 (lower is better)
Translates to: RKCADTPTSCHH*SRRSESGQRCR
Trigger: ACGGCAACGCTGCCCGCTCTCTGACCTCCTTGACCAGTGATGACAACTTGTGGGCGTGTCTGCACACTTCCT
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000091246.11
ENSMUST00000102697.10
CDS CCA 72 bp CAGCAAGCTTCTCCATCTGGACCAGGGTGTCCTCTGTaGGAGCGCCCTCTAAGAGCTTTTCTGTCAGCCTGC +
Preference number: 6 (lower is better)
Translates to: QQASPSGPGCPL*ERPLRAFLSAC
Trigger: GCAGGCTGACAGAAAAGCTCTTAGAGGGCGCTCCCACAGAGGACACCCTGGTCCAGATGGAGAAGCTTGCTG
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000091246.11
ENSMUST00000102697.10
CDS CAA 72 bp GGAGCACCCAAGACCTGTCTCATGTGTCGAAGAGACTaGAAGCCGGTAAGCTTTGGGGGCTGCCAGCTCCCA +
Preference number: 6 (lower is better)
Translates to: GAPKTCLMCRRD*KPVSFGGCQLP
Trigger: TGGGAGCTGGCAGCCCCCAAAGCTTACCGGCTTCAAGTCTCTTCGACACATGAGACAGGTCTTGGGTGCTCC
58% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000091246.11
ENSMUST00000102697.10
CDS TCA 72 bp ATCATGACTGATATAGCCTGGGTGCCCTACGGCAAGTaGCCGGCAGCCCTCACACATGTCCGACTTCTTGGG +
Preference number: 6 (lower is better)
Translates to: IMTDIAWVPYGK*PAALTHVRLLG
Trigger: CCCAAGAAGTCGGACATGTGTGAGGGCTGCCGGTCACTTGCCGTAGGGCACCCAGGCTATATCAGTCATGAT
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000091246.11
ENSMUST00000102697.10
CDS GCA 72 bp GTGTTCATCCTCTGGGCACGCTGTGGACATCCAAACTaGTCTGCCTCAAACACCTTGAAGGCCTTGGCCTGG +
Preference number: 6 (lower is better)
Translates to: VFILWARCGHPN*SASNTLKALAW
Trigger: CCAGGCCAAGGCCTTCAAGGTGTTTGAGGCAGAGCAGTTTGGATGTCCACAGCGTGCCCAGAGGATGAACAC
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000091246.11
ENSMUST00000102697.10
CDS GCA 72 bp TGTCGAAGAGACTTGAAGCCGGTAAGCTTTGGGGGCTaGCAGCTCCCACAGGCTGAGAGAAAGGATGACTCT +
Preference number: 6 (lower is better)
Translates to: CRRDLKPVSFGG*QLPQAERKDDS
Trigger: AGAGTCATCCTTTCTCTCAGCCTGTGGGAGCTGGCAGCCCCCAAAGCTTACCGGCTTCAAGTCTCTTCGACA
56% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000091246.11
ENSMUST00000102697.10
CDS CCA 72 bp GGGCGTGAAGGCAGTGTTCATCCTCTGGGCACGCTGTaGACATCCAAACTGCTCTGCCTCAAACACCTTGAA +
Preference number: 6 (lower is better)
Translates to: GREGSVHPLGTL*TSKLLCLKHLE
Trigger: TTCAAGGTGTTTGAGGCAGAGCAGTTTGGATGTCCACAGCGTGCCCAGAGGATGAACACTGCCTTCACGCCC
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000091246.11
ENSMUST00000102697.10
CDS CAA 72 bp CTCAGTCCCGTCATCCAGAACTTCAGCAGTTTGACGTaGTCCTCCTCTGATGCGCCTAGGACGCTTAGGAGC +
Preference number: 6 (lower is better)
Translates to: LSPVIQNFSSLT*SSSDAPRTLRS
Trigger: GCTCCTAAGCGTCCTAGGCGCATCAGAGGAGGACAACGTCAAACTGCTGAAGTTCTGGATGACGGGACTGAG
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000091246.11
ENSMUST00000102697.10
CDS CCA 72 bp CGATCCATCATGATGGCGATGATGCTGTACCAGCGCTaGAAGCCTCTGGCCAGGCTGTCTTTGATGAAGAAG +
Preference number: 6 (lower is better)
Translates to: RSIMMAMMLYQR*KPLARLSLMKK
Trigger: CTTCTTCATCAAAGACAGCCTGGCCAGAGGCTTCCAGCGCTGGTACAGCATCATCGCCATCATGATGGATCG
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000091246.11
ENSMUST00000102697.10
CDS CAA 72 bp GTTTTGCTCAGTCCCGTCATCCAGAACTTCAGCAGTTaGACGTTGTCCTCCTCTGATGCGCCTAGGACGCTT +
Preference number: 6 (lower is better)
Translates to: VLLSPVIQNFSS*TLSSSDAPRTL
Trigger: AAGCGTCCTAGGCGCATCAGAGGAGGACAACGTCAAACTGCTGAAGTTCTGGATGACGGGACTGAGCAAAAC
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000091246.11
ENSMUST00000102697.10
CDS CAA 90 bp TCCTCTGATGCGCCTAGGACGCTTAGGAGCTTCTGTGTGTCCTCCTaGGGGCGACTGTCTACCTTGGTGAATTTAAACAGGACTTTCACT +
Preference number: 6 (lower is better)
Translates to: SSDAPRTLRSFCVSS*GRLSTLVNLNRTFT
Trigger: AGTGAAAGTCCTGTTTAAATTCACCAAGGTAGACAGTCGCCCCAAGGAGGACACACAGAAGCTCCTAAGCGTCCTAGGCGCATCAGAGGA
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000091246.11
ENSMUST00000102697.10
CDS TCA 72 bp TTTTGCTCAGTCCCGTCATCCAGAACTTCAGCAGTTTaGCGTTGTCCTCCTCTGATGCGCCTAGGACGCTTA +
Preference number: 6 (lower is better)
Translates to: FCSVPSSRTSAV*RCPPLMRLGRL
Trigger: TAAGCGTCCTAGGCGCATCAGAGGAGGACAACGTCAAACTGCTGAAGTTCTGGATGACGGGACTGAGCAAAA
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000091246.11
ENSMUST00000102697.10
CDS GCA 72 bp TTGATGAAGAAGGTGTGGCTGAACACAAAGCCGTGCTaGTCATCACCAAAGAAGATGGGGCCTTCACGACCA +
Preference number: 6 (lower is better)
Translates to: LMKKVWLNTKPC*SSPKKMGPSRP
Trigger: TGGTCGTGAAGGCCCCATCTTCTTTGGTGATGAGCAGCACGGCTTTGTGTTCAGCCACACCTTCTTCATCAA
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000091246.11
ENSMUST00000102697.10
CDS CAA 90 bp AGGCAGATGAGACATTGGTCCACCACATCCACAGACAGGTTCTGGTaGGTCAGAGCTGCTTCAATCTTATTCAGGATAGTGGGCCCAACT +
Preference number: 6 (lower is better)
Translates to: RQMRHWSTTSTDRFW*VRAASILFRIVGPT
Trigger: AGTTGGGCCCACTATCCTGAATAAGATTGAAGCAGCTCTGACCAACCAGAACCTGTCTGTGGATGTGGTGGACCAATGTCTCATCTGCCT
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000091246.11
ENSMUST00000102697.10
CDS CAA 90 bp GACTTTCACTTTGTTCATCCATTCCTCCTTGAGGCAGATGAGACATaGGTCCACCACATCCACAGACAGGTTCTGGTTGGTCAGAGCTGC +
Preference number: 6 (lower is better)
Translates to: DFHFVHPFLLEADET*VHHIHRQVLVGQSC
Trigger: GCAGCTCTGACCAACCAGAACCTGTCTGTGGATGTGGTGGACCAATGTCTCATCTGCCTCAAGGAGGAATGGATGAACAAAGTGAAAGTC
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000091246.11
ENSMUST00000102697.10
CDS TCA 72 bp TCACATCTCTGCTTTTCCAGATCACCTGATTCCCCATaGGGACATGCCAAGCCAACATACGGAAGGATGGAG +
Preference number: 6 (lower is better)
Translates to: SHLCFSRSPDSP*GHAKPTYGRME
Trigger: CTCCATCCTTCCGTATGTTGGCTTGGCATGTCCTCATGGGGAATCAGGTGATCTGGAAAAGCAGAGATGTGA
50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000091246.11
ENSMUST00000102697.10
CDS GCA 72 bp CACCACATCCACAGACAGGTTCTGGTTGGTCAGAGCTaGTTCAATCTTATTCAGGATAGTGGGCCCAACTCT +
Preference number: 6 (lower is better)
Translates to: HHIHRQVLVGQS*FNLIQDSGPNS
Trigger: AGAGTTGGGCCCACTATCCTGAATAAGATTGAAGCAGCTCTGACCAACCAGAACCTGTCTGTGGATGTGGTG
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000091246.11
ENSMUST00000102697.10
CDS CAA 72 bp AGACATTGGTCCACCACATCCACAGACAGGTTCTGGTaGGTCAGAGCTGCTTCAATCTTATTCAGGATAGTG +
Preference number: 6 (lower is better)
Translates to: RHWSTTSTDRFW*VRAASILFRIV
Trigger: CACTATCCTGAATAAGATTGAAGCAGCTCTGACCAACCAGAACCTGTCTGTGGATGTGGTGGACCAATGTCT
47% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000091246.11
ENSMUST00000102697.10
CDS CCA 72 bp ATGAGACATTGGTCCACCACATCCACAGACAGGTTCTaGTTGGTCAGAGCTGCTTCAATCTTATTCAGGATA +
Preference number: 6 (lower is better)
Translates to: MRHWSTTSTDRF*LVRAASILFRI
Trigger: TATCCTGAATAAGATTGAAGCAGCTCTGACCAACCAGAACCTGTCTGTGGATGTGGTGGACCAATGTCTCAT
46% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000091246.11
ENSMUST00000102697.10