Pregenerated sensors for FKRP (Mus musculus)
Ensembl gene IDs: ENSMUSG00000048920Ensembl transcript IDs: ENSMUST00000061390.9, ENSMUST00000206259.2
Found 97 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR CCA 90 bp | GCAGCACTCTCAAAGGAAAGTGCCACATTCGGGGAGGAGAGGAGGTaGCCAGTGCTGTCCCACCTCCCAGAGCCACTCCAAGAAAACCAG | + |
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Preference number: 1 (lower is better) Translates to: AALSKESATFGEERR*PVLSHLPEPLQENQ Trigger: CTGGTTTTCTTGGAGTGGCTCTGGGAGGTGGGACAGCACTGGCCACCTCCTCTCCTCCCCGAATGTGGCACTTTCCTTTGAGAGTGCTGC 59% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000061390.9 |
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| 3UTR GCA 90 bp | TCTCAAAGGAAAGTGCCACATTCGGGGAGGAGAGGAGGTGGCCAGTaGTGTCCCACCTCCCAGAGCCACTCCAAGAAAACCAGAGATGAA | + |
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Preference number: 1 (lower is better) Translates to: SQRKVPHSGRRGGGQ*CPTSQSHSKKTRDE Trigger: TTCATCTCTGGTTTTCTTGGAGTGGCTCTGGGAGGTGGGACAGCACTGGCCACCTCCTCTCCTCCCCGAATGTGGCACTTTCCTTTGAGA 56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000061390.9 |
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| 3UTR TCA 90 bp | GAGGCTGAGTTGCTCCAGTCTTTGGGTTCTGCTTCCCGCCAAAGCTaGAACTGTCCTGTGTGTTCCCTCCAATCTTCCTTGGCCAGTTCA | + |
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Preference number: 1 (lower is better) Translates to: EAELLQSLGSASRQS*NCPVCSLQSSLASS Trigger: TGAACTGGCCAAGGAAGATTGGAGGGAACACACAGGACAGTTTCAGCTTTGGCGGGAAGCAGAACCCAAAGACTGGAGCAACTCAGCCTC 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000061390.9 |
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| 3UTR GCA 90 bp | CACTCTCCAAGGGCCTACAGCTCTTGGAATATAGGGCAGAGACTATaGAGAGCCCTAAAGACTCCCTGGGCTTTTCTATCAAAGGCCACC | + |
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Preference number: 1 (lower is better) Translates to: HSPRAYSSWNIGQRL*RALKTPWAFLSKAT Trigger: GGTGGCCTTTGATAGAAAAGCCCAGGGAGTCTTTAGGGCTCTGCATAGTCTCTGCCCTATATTCCAAGAGCTGTAGGCCCTTGGAGAGTG 52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000061390.9 |
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| 3UTR-3UTR CCA 90 bp | GTTTATCCCTTCCTAGAAGGGAGGGGGAAGGCGGGGAACAGGTGCAGAGGGCTGGGGGAGGAGAGGAGGTaGCCAGTGCTGTCCCACCTC | + |
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Preference number: 2 (lower is better) Translates to: VYPFLEGRGKAGNRCRGLGEERR*PVLSHL Trigger: GAGGTGGGACAGCACTGGCCACCTCCTCTCCTCCCC...CAGCCCTCTGCACCTGTTCCCCGCCTTCCCCCTCCCTTCTAGGAAGGGATAAAC 63% GC, longest homopolymer 5 nt, total homopolymer stretches 14 nt. Matches the following 1 transcripts: ENSMUST00000061390.9 |
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| 3UTR CAA 90 bp | GGCTCGTCTGTTCTCCGGATCTCACTCTCCAAGGGCCTACAGCTCTaGGAATATAGGGCAGAGACTATGCAGAGCCCTAAAGACTCCCTG | + |
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Preference number: 2 (lower is better) Translates to: GSSVLRISLSKGLQL*EYRAETMQSPKDSL Trigger: CAGGGAGTCTTTAGGGCTCTGCATAGTCTCTGCCCTATATTCCAAGAGCTGTAGGCCCTTGGAGAGTGAGATCCGGAGAACAGACGAGCC 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000061390.9 |
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| 3UTR-3UTR TCA 90 bp | CAGAGACTATGCAGAGCCCTAAAGACTCCCTGGGCTTTTCTATCAAAGGCCACCGCTTCCCGCCAAAGCTaGAACTGTCCTGTGTGTTCC | + |
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Preference number: 2 (lower is better) Translates to: QRLCRALKTPWAFLSKATASRQS*NCPVCS Trigger: GGAACACACAGGACAGTTTCAGCTTTGGCGGGAAGC...GGTGGCCTTTGATAGAAAAGCCCAGGGAGTCTTTAGGGCTCTGCATAGTCTCTG 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000061390.9 |
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| 3UTR-3UTR CCA 90 bp | GAGGTAATGCATTGGCCAGATCCCAAACCAGAGAGAGCCCAGTCAGTCCTCCAAGCCCTAAAGACTCCCTaGGCTTTTCTATCAAAGGCC | + |
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Preference number: 2 (lower is better) Translates to: EVMHWPDPKPERAQSVLQALKTP*AFLSKA Trigger: GGCCTTTGATAGAAAAGCCCAGGGAGTCTTTAGGGC...TTGGAGGACTGACTGGGCTCTCTCTGGTTTGGGATCTGGCCAATGCATTACCTC 52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000061390.9 |
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| 3UTR-3UTR CCA 90 bp | CAAGCAGCACTCTCAAAGGAAAGTGCCACATTCGGGGAGGAGAGGAGGTGGCCATACCCAATCACAAACTaGTTCAGATCCATACACAAT | + |
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Preference number: 2 (lower is better) Translates to: QAALSKESATFGEERRWPYPITN*FRSIHN Trigger: ATTGTGTATGGATCTGAACCAGTTTGTGATTGGGTA...TGGCCACCTCCTCTCCTCCCCGAATGTGGCACTTTCCTTTGAGAGTGCTGCTTG 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000061390.9 |
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| 3UTR CCA 72 bp | TCAAAGGAAAGTGCCACATTCGGGGAGGAGAGGAGGTaGCCAGTGCTGTCCCACCTCCCAGAGCCACTCCAA | + |
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Preference number: 3 (lower is better) Translates to: SKESATFGEERR*PVLSHLPEPLQ Trigger: TTGGAGTGGCTCTGGGAGGTGGGACAGCACTGGCCACCTCCTCTCCTCCCCGAATGTGGCACTTTCCTTTGA 60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000061390.9 |
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| 3UTR-3UTR CAA 90 bp | CAAGCAGCACTCTCAAAGGAAAGTGCCACATTCGGGGAGGAGAGGAGGTGGCCAGAGTTGCTCCAGTCTTaGGGTTCTGCTTCCCGCCAA | + |
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Preference number: 3 (lower is better) Translates to: QAALSKESATFGEERRWPELLQS*GSASRQ Trigger: TTGGCGGGAAGCAGAACCCAAAGACTGGAGCAACTC...TGGCCACCTCCTCTCCTCCCCGAATGTGGCACTTTCCTTTGAGAGTGCTGCTTG 57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000061390.9 |
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| 3UTR TCA 72 bp | AAGGGAGGGGGAAGGCGGGGAACAGGTGCAGAGGGCTaGAATAAAGAGGTAATGCATTGGCCAGATCCCAAA | + |
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Preference number: 3 (lower is better) Translates to: KGGGRRGTGAEG*NKEVMHWPDPK Trigger: TTTGGGATCTGGCCAATGCATTACCTCTTTATTTCAGCCCTCTGCACCTGTTCCCCGCCTTCCCCCTCCCTT 54% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000061390.9 |
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| 3UTR CCA 72 bp | CTTTCCTCCCTCATGAGGCTGAGTTGCTCCAGTCTTTaGGTTCTGCTTCCCGCCAAAGCTGAAACTGTCCTG | + |
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Preference number: 3 (lower is better) Translates to: LSSLMRLSCSSL*VLLPAKAETVL Trigger: CAGGACAGTTTCAGCTTTGGCGGGAAGCAGAACCCAAAGACTGGAGCAACTCAGCCTCATGAGGGAGGAAAG 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000061390.9 |
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| 3UTR CCA 72 bp | CCCTCCAGTGCACAGCCCCACTACCCAATCACAAACTaGTTCAGATCCATACACAATCCGAGGCAAGAACAG | + |
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Preference number: 3 (lower is better) Translates to: PSSAQPHYPITN*FRSIHNPRQEQ Trigger: CTGTTCTTGCCTCGGATTGTGTATGGATCTGAACCAGTTTGTGATTGGGTAGTGGGGCTGTGCACTGGAGGG 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000061390.9 |
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| 3UTR TCA 72 bp | TTGCTCCAGTCTTTGGGTTCTGCTTCCCGCCAAAGCTaGAACTGTCCTGTGTGTTCCCTCCAATCTTCCTTG | + |
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Preference number: 3 (lower is better) Translates to: LLQSLGSASRQS*NCPVCSLQSSL Trigger: CAAGGAAGATTGGAGGGAACACACAGGACAGTTTCAGCTTTGGCGGGAAGCAGAACCCAAAGACTGGAGCAA 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000061390.9 |
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| 3UTR CCA 72 bp | ATAGGGCAGAGACTATGCAGAGCCCTAAAGACTCCCTaGGCTTTTCTATCAAAGGCCACCACTTTCCTCCCT | + |
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Preference number: 3 (lower is better) Translates to: IGQRLCRALKTP*AFLSKATTFLP Trigger: AGGGAGGAAAGTGGTGGCCTTTGATAGAAAAGCCCAGGGAGTCTTTAGGGCTCTGCATAGTCTCTGCCCTAT 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000061390.9 |
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| 3UTR GCA 72 bp | AGGGCCTACAGCTCTTGGAATATAGGGCAGAGACTATaGAGAGCCCTAAAGACTCCCTGGGCTTTTCTATCA | + |
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Preference number: 3 (lower is better) Translates to: RAYSSWNIGQRL*RALKTPWAFLS Trigger: TGATAGAAAAGCCCAGGGAGTCTTTAGGGCTCTGCATAGTCTCTGCCCTATATTCCAAGAGCTGTAGGCCCT 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000061390.9 |
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| CDS-3UTR GCA 90 bp | GGAGAGGAGGTGGCCAGTGCTGTCCCACCTCCCAGAGCCACTCCAAGAAAACCAGAGGATGATGGCGGCTaGCAGGGCAGCCCAGCAGCG | + |
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Preference number: 4 (lower is better) Translates to: GEEVASAVPPPRATPRKPEDDGG*QGSPAA Trigger: CGCTGCTGGGCTGCCCTGGCAGCCGCCATCATCCTC...TGGTTTTCTTGGAGTGGCTCTGGGAGGTGGGACAGCACTGGCCACCTCCTCTCC 64% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000061390.9 |
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| CDS-3UTR GCA 90 bp | GGAGGAGAGGAGGTGGCCAGTGCTGTCCCACCTCCCAGAGCCACTCCAAGAAAAGTCAAGTCCAGCAGCTaGACTGCCCAGCCGCGCAGG | + |
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Preference number: 4 (lower is better) Translates to: GGEEVASAVPPPRATPRKVKSSS*TAQPRR Trigger: CCTGCGCGGCTGGGCAGTGCAGCTGCTGGACTTGAC...TTTTCTTGGAGTGGCTCTGGGAGGTGGGACAGCACTGGCCACCTCCTCTCCTCC 63% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000061390.9 |
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| CDS-3UTR GCA 90 bp | GTTTATCCCTTCCTAGAAGGGAGGGGGAAGGCGGGGAACAGGTGCAGAGGGCTGTCGGCACCCCGCAACTaGTCGCAGTTGCCCACGTCC | + |
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Preference number: 4 (lower is better) Translates to: VYPFLEGRGKAGNRCRGLSAPRN*SQLPTS Trigger: GGACGTGGGCAACTGCGAGCAGTTGCGGGGTGCCGA...CAGCCCTCTGCACCTGTTCCCCGCCTTCCCCCTCCCTTCTAGGAAGGGATAAAC 63% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 1 transcripts: ENSMUST00000061390.9 |
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| CDS-3UTR TCA 90 bp | CAGAGCCCTAAAGACTCCCTGGGCTTTTCTATCAAAGGCCACCACTTTCCTCCCCTCCAGGTGGCCTGGTaGCTCGGCCCGCGCTCCATC | + |
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Preference number: 4 (lower is better) Translates to: QSPKDSLGFSIKGHHFPPLQVAW*LGPRSI Trigger: GATGGAGCGCGGGCCGAGTCACCAGGCCACCTGGAG...GGGAGGAAAGTGGTGGCCTTTGATAGAAAAGCCCAGGGAGTCTTTAGGGCTCTG 61% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000061390.9 |
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| CDS-3UTR CCA 90 bp | GGAGAGGAGGTGGCCAGTGCTGTCCCACCTCCCAGAGCCACTCCAAGAAAACCAGGGCCCGGGAGTTTCTaGGCTGGTGTTGTAGCCATG | + |
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Preference number: 4 (lower is better) Translates to: GEEVASAVPPPRATPRKPGPGSF*AGVVAM Trigger: CATGGCTACAACACCAGCCCAGAAACTCCCGGGCCC...TGGTTTTCTTGGAGTGGCTCTGGGAGGTGGGACAGCACTGGCCACCTCCTCTCC 61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000061390.9 |
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| CDS-3UTR GCA 90 bp | GGAGAGGAGGTGGCCAGTGCTGTCCCACCTCCCAGAGCCACTCCAAGAAAACCAAGCGCGCGCTCTCCTTaGTGCAGCCAAACCACTCTA | + |
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Preference number: 4 (lower is better) Translates to: GEEVASAVPPPRATPRKPSARSP*CSQTTL Trigger: TAGAGTGGTTTGGCTGCAGCAAGGAGAGCGCGCGCT...TGGTTTTCTTGGAGTGGCTCTGGGAGGTGGGACAGCACTGGCCACCTCCTCTCC 60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000061390.9 |
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| CDS-3UTR GCA 90 bp | GTTTATCCCTTCCTAGAAGGGAGGGGGAAGGCGGGGAACAGGTGCAGAGGGCTGGCAACTGCTCGCAGTTaGCCACGTCCTCCAGGTAGA | + |
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Preference number: 4 (lower is better) Translates to: VYPFLEGRGKAGNRCRGLATARS*PRPPGR Trigger: TCTACCTGGAGGACGTGGGCAACTGCGAGCAGTTGC...CAGCCCTCTGCACCTGTTCCCCGCCTTCCCCCTCCCTTCTAGGAAGGGATAAAC 60% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000061390.9 |
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| CDS-3UTR GCA 90 bp | GGAGAGGAGGTGGCCAGTGCTGTCCCACCTCCCAGAGCCACTCCAAGAAAACCAGGCCACAGGTCCACGTaGAGGTGGTTGTTCTCACTG | + |
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Preference number: 4 (lower is better) Translates to: GEEVASAVPPPRATPRKPGHRST*RWLFSL Trigger: CAGTGAGAACAACCACCTGCACGTGGACCTGTGGCC...TGGTTTTCTTGGAGTGGCTCTGGGAGGTGGGACAGCACTGGCCACCTCCTCTCC 60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000061390.9 |
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| CDS-3UTR CCA 90 bp | GAGGTAATGCATTGGCCAGATCCCAAACCAGAGAGAGCCCAGTCAGTCCTCCAACGGTCCAGGGCTGGCTaGAGCAGAGCCAGGCGAACG | + |
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Preference number: 4 (lower is better) Translates to: EVMHWPDPKPERAQSVLQRSRAG*SRARRT Trigger: CGTTCGCCTGGCTCTGCTCCAGCCAGCCCTGGACCG...TTGGAGGACTGACTGGGCTCTCTCTGGTTTGGGATCTGGCCAATGCATTACCTC 60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000061390.9 |
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| CDS-3UTR CCA 90 bp | TTTCTATCAAAGGCCACCACTTTCCTCCCTCATGAGGCTGAGTTGCTCCAGTCTGCGCTGGGTTGGCGGTaGCGACCGGGGCGGCCACTA | + |
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Preference number: 4 (lower is better) Translates to: FLSKATTFLPHEAELLQSALGWR*RPGRPL Trigger: TAGTGGCCGCCCCGGTCGCCACCGCCAACCCAGCGC...AGACTGGAGCAACTCAGCCTCATGAGGGAGGAAAGTGGTGGCCTTTGATAGAAA 60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000061390.9 |
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| CDS-3UTR TCA 90 bp | TATCAAAGGCCACCACTTTCCTCCCTCATGAGGCTGAGTTGCTCCAGTCTTTGGGGGGCACCGAGAGGTTaGAGAGGTCGCGGGAGCGCA | + |
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Preference number: 4 (lower is better) Translates to: YQRPPLSSLMRLSCSSLWGAPRG*RGRGSA Trigger: TGCGCTCCCGCGACCTCTTCAACCTCTCGGTGCCCC...CCAAAGACTGGAGCAACTCAGCCTCATGAGGGAGGAAAGTGGTGGCCTTTGATA 59% GC, longest homopolymer 6 nt, total homopolymer stretches 6 nt. Matches the following 1 transcripts: ENSMUST00000061390.9 |
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| CDS-3UTR CCA 90 bp | GGAGAGGAGGTGGCCAGTGCTGTCCCACCTCCCAGAGCCACTCCAAGAAAACCACTGCAGGAAGTGCTCTaGGAACTCAACATCCTGCCG | + |
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Preference number: 4 (lower is better) Translates to: GEEVASAVPPPRATPRKPLQEVL*ELNILP Trigger: CGGCAGGATGTTGAGTTCCCAGAGCACTTCCTGCAG...TGGTTTTCTTGGAGTGGCTCTGGGAGGTGGGACAGCACTGGCCACCTCCTCTCC 59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000061390.9 |
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| CDS-3UTR CCA 90 bp | CCAAAGCTGAAACTGTCCTGTGTGTTCCCTCCAATCTTCCTTGGCCAGTTCACCACCATTCGCTCCAGGTaGCCTGGTGACTCGGCCCGC | + |
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Preference number: 4 (lower is better) Translates to: PKLKLSCVFPPIFLGQFTTIRSR*PGDSAR Trigger: GCGGGCCGAGTCACCAGGCCACCTGGAGCGAATGGT...GGTGAACTGGCCAAGGAAGATTGGAGGGAACACACAGGACAGTTTCAGCTTTGG 58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000061390.9 |
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| CDS-3UTR GCA 90 bp | GCTCCAGTCTTTGGGTTCTGCTTCCCGCCAAAGCTGAAACTGTCCTGTGTGTTCGGGAACTCAACATCCTaGCGGTGGTCCAGCCACGTG | + |
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Preference number: 4 (lower is better) Translates to: APVFGFCFPPKLKLSCVFGNSTS*RWSSHV Trigger: CACGTGGCTGGACCACCGGCAGGATGTTGAGTTCCC...GAACACACAGGACAGTTTCAGCTTTGGCGGGAAGCAGAACCCAAAGACTGGAGC 57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000061390.9 |
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| CDS-3UTR CCA 90 bp | GCTCCAGTCTTTGGGTTCTGCTTCCCGCCAAAGCTGAAACTGTCCTGTGTGTTCGAGCCACAAACTCGGTaGCTACGTAGGTCTCCGGGC | + |
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Preference number: 4 (lower is better) Translates to: APVFGFCFPPKLKLSCVFEPQTR*LRRSPG Trigger: GCCCGGAGACCTACGTAGCCACCGAGTTTGTGGCTC...GAACACACAGGACAGTTTCAGCTTTGGCGGGAAGCAGAACCCAAAGACTGGAGC 57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000061390.9 |
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| CDS-3UTR CCA 90 bp | AAGGGCCTACAGCTCTTGGAATATAGGGCAGAGACTATGCAGAGCCCTAAAGACTCTGTAGGAAGAGGCTaGTGGCCAGCGGCCGCGCCA | + |
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Preference number: 4 (lower is better) Translates to: KGLQLLEYRAETMQSPKDSVGRG*WPAAAP Trigger: TGGCGCGGCCGCTGGCCACCAGCCTCTTCCTACAGA...GTCTTTAGGGCTCTGCATAGTCTCTGCCCTATATTCCAAGAGCTGTAGGCCCTT 57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000061390.9 |
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| CDS-3UTR GCA 90 bp | TCCAGTGCACAGCCCCACTACCCAATCACAAACTGGTTCAGATCCATACACAATGGCGAACGTTGGGGATaGGAGGCAAGGCCAGGGGTG | + |
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Preference number: 4 (lower is better) Translates to: SSAQPHYPITNWFRSIHNGERWG*EARPGV Trigger: CACCCCTGGCCTTGCCTCGCATCCCCAACGTTCGCC...ATTGTGTATGGATCTGAACCAGTTTGTGATTGGGTAGTGGGGCTGTGCACTGGA 56% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 1 transcripts: ENSMUST00000061390.9 |
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| CDS-3UTR GCA 90 bp | CAAGCAGCACTCTCAAAGGAAAGTGCCACATTCGGGGAGGAGAGGAGGTGGCCAAGTGGCTGCAGGAAGTaGTCTGGGAACTCAACATCC | + |
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Preference number: 4 (lower is better) Translates to: QAALSKESATFGEERRWPSGCRK*SGNSTS Trigger: GGATGTTGAGTTCCCAGAGCACTTCCTGCAGCCACT...TGGCCACCTCCTCTCCTCCCCGAATGTGGCACTTTCCTTTGAGAGTGCTGCTTG 56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000061390.9 |
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| CDS-3UTR CCA 90 bp | GCTCCAGTCTTTGGGTTCTGCTTCCCGCCAAAGCTGAAACTGTCCTGTGTGTTCTACCACGGGCTGGGCTaGGTCCTGCTGCAAAAAGGA | + |
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Preference number: 4 (lower is better) Translates to: APVFGFCFPPKLKLSCVFYHGLG*VLLQKG Trigger: TCCTTTTTGCAGCAGGACCCAGCCCAGCCCGTGGTA...GAACACACAGGACAGTTTCAGCTTTGGCGGGAAGCAGAACCCAAAGACTGGAGC 56% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000061390.9 |
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| CDS-3UTR CCA 90 bp | AAGGGCCTACAGCTCTTGGAATATAGGGCAGAGACTATGCAGAGCCCTAAAGACGCCACTACCACGGGCTaGGCTGGGTCCTGCTGCAAA | + |
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Preference number: 4 (lower is better) Translates to: KGLQLLEYRAETMQSPKDATTTG*AGSCCK Trigger: TTTGCAGCAGGACCCAGCCCAGCCCGTGGTAGTGGC...GTCTTTAGGGCTCTGCATAGTCTCTGCCCTATATTCCAAGAGCTGTAGGCCCTT 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000061390.9 |
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| CDS-3UTR CCA 90 bp | TTTCTATCAAAGGCCACCACTTTCCTCCCTCATGAGGCTGAGTTGCTCCAGTCTAGGCAAGGCCAGGGGTaGGTAAGGGAGTGTGTCGGC | + |
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Preference number: 4 (lower is better) Translates to: FLSKATTFLPHEAELLQSRQGQG*VRECVG Trigger: GCCGACACACTCCCTTACCCACCCCTGGCCTTGCCT...AGACTGGAGCAACTCAGCCTCATGAGGGAGGAAAGTGGTGGCCTTTGATAGAAA 56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000061390.9 |
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| CDS-3UTR TCA 90 bp | TATCAAAGGCCACCACTTTCCTCCCTCATGAGGCTGAGTTGCTCCAGTCTTTGGACTCCGGGTTCTCGATaGCCCCAGGCCCAAACTTCA | + |
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Preference number: 4 (lower is better) Translates to: YQRPPLSSLMRLSCSSLWTPGSR*PQAQTS Trigger: TGAAGTTTGGGCCTGGGGTCATCGAGAACCCGGAGT...CCAAAGACTGGAGCAACTCAGCCTCATGAGGGAGGAAAGTGGTGGCCTTTGATA 54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000061390.9 |
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| CDS-3UTR GCA 90 bp | CTCCCTGGGCTTTTCTATCAAAGGCCACCACTTTCCTCCCTCATGAGGCTGAGTTGGGCTGGGTCCTGCTaGAAAAAGGAATCCACTAGC | + |
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Preference number: 4 (lower is better) Translates to: LPGLFYQRPPLSSLMRLSWAGSC*KKESTS Trigger: GCTAGTGGATTCCTTTTTGCAGCAGGACCCAGCCCA...ACTCAGCCTCATGAGGGAGGAAAGTGGTGGCCTTTGATAGAAAAGCCCAGGGAG 53% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000061390.9 |
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| CDS-3UTR CCA 90 bp | GAGGTAATGCATTGGCCAGATCCCAAACCAGAGAGAGCCCAGTCAGTCCTCCAAAGGTCCACGTGCAGGTaGTTGTTCTCACTGTACTGT | + |
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Preference number: 4 (lower is better) Translates to: EVMHWPDPKPERAQSVLQRSTCR*LFSLYC Trigger: ACAGTACAGTGAGAACAACCACCTGCACGTGGACCT...TTGGAGGACTGACTGGGCTCTCTCTGGTTTGGGATCTGGCCAATGCATTACCTC 52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000061390.9 |
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| CDS-3UTR CCA 90 bp | TCCAGTGCACAGCCCCACTACCCAATCACAAACTGGTTCAGATCCATACACAATTCAACATCCTGCCGGTaGTCCAGCCACGTGTCCTTG | + |
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Preference number: 4 (lower is better) Translates to: SSAQPHYPITNWFRSIHNSTSCR*SSHVSL Trigger: CAAGGACACGTGGCTGGACCACCGGCAGGATGTTGA...ATTGTGTATGGATCTGAACCAGTTTGTGATTGGGTAGTGGGGCTGTGCACTGGA 52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000061390.9 |
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| 3UTR CAA 72 bp | GTTCTCCGGATCTCACTCTCCAAGGGCCTACAGCTCTaGGAATATAGGGCAGAGACTATGCAGAGCCCTAAA | + |
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Preference number: 4 (lower is better) Translates to: VLRISLSKGLQL*EYRAETMQSPK Trigger: TTTAGGGCTCTGCATAGTCTCTGCCCTATATTCCAAGAGCTGTAGGCCCTTGGAGAGTGAGATCCGGAGAAC 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000061390.9 |
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| CDS CCA 90 bp | GCCGCTCTCCGTGAGCGCCCCTCACGTTCCGCCTTCCAGCGCGCGTaGGCGGTGGCCAGCGGTGGCTGGCGCGCCGCGGCGAAGGTCAAG | + |
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Preference number: 5 (lower is better) Translates to: AALRERPSRSAFQRA*AVASGGWRAAAKVK Trigger: CTTGACCTTCGCCGCGGCGCGCCAGCCACCGCTGGCCACCGCCCACGCGCGCTGGAAGGCGGAACGTGAGGGGCGCTCACGGAGAGCGGC 77% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000061390.9 |
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| CDS GCA 90 bp | GCGCTGGGTTGGCGGTGGCGACCGGGGCGGCCACTAGGCGCGCGCTaGTCCCTCGGAGCGCCTCCACCATTCGCTCCAGGTGGCCTGGTG | + |
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Preference number: 5 (lower is better) Translates to: ALGWRWRPGRPLGAR*SLGAPPPFAPGGLV Trigger: CACCAGGCCACCTGGAGCGAATGGTGGAGGCGCTCCGAGGGAGCAGCGCGCGCCTAGTGGCCGCCCCGGTCGCCACCGCCAACCCAGCGC 76% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000061390.9 |
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| CDS CCA 90 bp | CCCCTCACGTTCCGCCTTCCAGCGCGCGTGGGCGGTGGCCAGCGGTaGCTGGCGCGCCGCGGCGAAGGTCAAGTCCAGCAGCTGCACTGC | + |
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Preference number: 5 (lower is better) Translates to: PLTFRLPARVGGGQR*LARRGEGQVQQLHC Trigger: GCAGTGCAGCTGCTGGACTTGACCTTCGCCGCGGCGCGCCAGCCACCGCTGGCCACCGCCCACGCGCGCTGGAAGGCGGAACGTGAGGGG 74% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000061390.9 |
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| CDS TCA 90 bp | GCTCACCAGACGGATTCCCAACGAGCGCAGCAGCGCCGCTCTCCGTaGGCGCCCCTCACGTTCCGCCTTCCAGCGCGCGTGGGCGGTGGC | + |
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Preference number: 5 (lower is better) Translates to: AHQTDSQRAQQRRSP*APLTFRLPARVGGG Trigger: GCCACCGCCCACGCGCGCTGGAAGGCGGAACGTGAGGGGCGCTCACGGAGAGCGGCGCTGCTGCGCTCGTTGGGAATCCGTCTGGTGAGC 72% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000061390.9 |
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| CDS GCA 90 bp | GCCAGCGGTGGCTGGCGCGCCGCGGCGAAGGTCAAGTCCAGCAGCTaGACTGCCCAGCCGCGCAGGGCGGTCTGTAGGAAGAGGCTGGTG | + |
|
Preference number: 5 (lower is better) Translates to: ASGGWRAAAKVKSSS*TAQPRRAVCRKRLV Trigger: CACCAGCCTCTTCCTACAGACCGCCCTGCGCGGCTGGGCAGTGCAGCTGCTGGACTTGACCTTCGCCGCGGCGCGCCAGCCACCGCTGGC 72% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000061390.9 |
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| CDS CCA 90 bp | CACCACGTAGCGCGCAGTCTCGCGCAGCGCGCGCAGGCAACAAGGTaGGGTCCAGCGGCCCTCATACAGGTAGGCGGGTGTGTCGCCCGC | + |
|
Preference number: 5 (lower is better) Translates to: HHVARSLAQRAQATR*GPAALIQVGGCVAR Trigger: GCGGGCGACACACCCGCCTACCTGTATGAGGGCCGCTGGACCCCACCTTGTTGCCTGCGCGCGCTGCGCGAGACTGCGCGCTACGTGGTG 71% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000061390.9 |
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| CDS CCA 90 bp | GTGACTCGGCCCGCGCTCCATCAGGCACTAGAGCCACAAACTCGGTaGCTACGTAGGTCTCCGGGCGCGAGGCCGCCGCTGGCCGGTCCA | + |
|
Preference number: 5 (lower is better) Translates to: VTRPALHQALEPQTR*LRRSPGARPPLAGP Trigger: TGGACCGGCCAGCGGCGGCCTCGCGCCCGGAGACCTACGTAGCCACCGAGTTTGTGGCTCTAGTGCCTGATGGAGCGCGGGCCGAGTCAC 70% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000061390.9 |
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| CDS CCA 90 bp | AGGCGCGCGCTGCTCCCTCGGAGCGCCTCCACCATTCGCTCCAGGTaGCCTGGTGACTCGGCCCGCGCTCCATCAGGCACTAGAGCCACA | + |
|
Preference number: 5 (lower is better) Translates to: RRALLPRSASTIRSR*PGDSARAPSGTRAT Trigger: TGTGGCTCTAGTGCCTGATGGAGCGCGGGCCGAGTCACCAGGCCACCTGGAGCGAATGGTGGAGGCGCTCCGAGGGAGCAGCGCGCGCCT 70% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000061390.9 |
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| CDS CCA 90 bp | CACAGCGTCGCCATCCAAAGCGTCGCAGCGGGGCGCGCTGGGAGCTaGGTCGTAGCGCGCAGTCCACTCCCGCAGGCTGACGTTCAGAGC | + |
|
Preference number: 5 (lower is better) Translates to: HSVAIQSVAAGRAGS*VVARSPLPQADVQS Trigger: GCTCTGAACGTCAGCCTGCGGGAGTGGACTGCGCGCTACGACCCAGCTCCCAGCGCGCCCCGCTGCGACGCTTTGGATGGCGACGCTGTG 70% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000061390.9 |
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| CDS CCA 90 bp | GAGCAGAGCCAGGCGAACGTTGGGGATGCGAGGCAAGGCCAGGGGTaGGTAAGGGAGTGTGTCGGCCGCCACTACCACGGGCTGGGCTGG | + |
|
Preference number: 5 (lower is better) Translates to: EQSQANVGDARQGQG*VRECVGRHYHGLGW Trigger: CCAGCCCAGCCCGTGGTAGTGGCGGCCGACACACTCCCTTACCCACCCCTGGCCTTGCCTCGCATCCCCAACGTTCGCCTGGCTCTGCTC 69% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000061390.9 ENSMUST00000206259.2 |
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| CDS GCA 90 bp | GTGTGTCGCCCGCCACCGTACCGAAGCAGCGCGCGCTCTCCTTGCTaGAGCCAAACCACTCTAGCCGCCCGCCTTCCCAGCTCACCAGAC | + |
|
Preference number: 5 (lower is better) Translates to: VCRPPPYRSSARSPC*SQTTLAARLPSSPD Trigger: GTCTGGTGAGCTGGGAAGGCGGGCGGCTAGAGTGGTTTGGCTGCAGCAAGGAGAGCGCGCGCTGCTTCGGTACGGTGGCGGGCGACACAC 68% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000061390.9 |
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| CDS GCA 90 bp | CAGATCTACGTCGTAGTCCCAAGGGATGATGTCGCCGTGGCGAGCTaGACCCAGCAGCGAGCCGCCCTCCAACCAGTAGCGCACGCCCGC | + |
|
Preference number: 5 (lower is better) Translates to: QIYVVVPRDDVAVAS*TQQRAALQPVAHAR Trigger: GCGGGCGTGCGCTACTGGTTGGAGGGCGGCTCGCTGCTGGGTGCAGCTCGCCACGGCGACATCATCCCTTGGGACTACGACGTAGATCTG 67% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000061390.9 |
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| CDS TCA 90 bp | CGTCCTCCAGGTAGATGCCCAGATCTACGTCGTAGTCCCAAGGGATaGTGTCGCCGTGGCGAGCTGCACCCAGCAGCGAGCCGCCCTCCA | + |
|
Preference number: 5 (lower is better) Translates to: RPPGRCPDLRRSPKG*CRRGELHPAASRPP Trigger: TGGAGGGCGGCTCGCTGCTGGGTGCAGCTCGCCACGGCGACATCATCCCTTGGGACTACGACGTAGATCTGGGCATCTACCTGGAGGACG 64% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000061390.9 |
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| CDS GCA 90 bp | GGGGCCTGTGCCATGAAACCCGCAAAGGGCAGGGGGACAAGTGGCTaGAGGAAGTGCTCTGGGAACTCAACATCCTGCCGGTGGTCCAGC | + |
|
Preference number: 5 (lower is better) Translates to: GACAMKPAKGRGTSG*RKCSGNSTSCRWSS Trigger: GCTGGACCACCGGCAGGATGTTGAGTTCCCAGAGCACTTCCTGCAGCCACTTGTCCCCCTGCCCTTTGCGGGTTTCATGGCACAGGCCCC 63% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000061390.9 |
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| CDS GCA 90 bp | GGGAGTGTGTCGGCCGCCACTACCACGGGCTGGGCTGGGTCCTGCTaGAAAAAGGAATCCACTAGCTCTGGCACCGCGTTGTCAAAAGCC | + |
|
Preference number: 5 (lower is better) Translates to: GSVSAATTTGWAGSC*KKESTSSGTALSKA Trigger: GGCTTTTGACAACGCGGTGCCAGAGCTAGTGGATTCCTTTTTGCAGCAGGACCCAGCCCAGCCCGTGGTAGTGGCGGCCGACACACTCCC 62% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENSMUST00000061390.9 ENSMUST00000206259.2 |
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| CDS GCA 90 bp | CATCCACTACCGAGCCAGCTTCGGCACCCCGCAACTGCTCGCAGTTaGCCACGTCCTCCAGGTAGATGCCCAGATCTACGTCGTAGTCCC | + |
|
Preference number: 5 (lower is better) Translates to: HPLPSQLRHPATARS*PRPPGRCPDLRRSP Trigger: GGGACTACGACGTAGATCTGGGCATCTACCTGGAGGACGTGGGCAACTGCGAGCAGTTGCGGGGTGCCGAAGCTGGCTCGGTAGTGGATG 62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000061390.9 |
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| CDS GCA 90 bp | GCCATGAAACCCGCAAAGGGCAGGGGGACAAGTGGCTGCAGGAAGTaGTCTGGGAACTCAACATCCTGCCGGTGGTCCAGCCACGTGTCC | + |
|
Preference number: 5 (lower is better) Translates to: AMKPAKGRGTSGCRK*SGNSTSCRWSSHVS Trigger: GGACACGTGGCTGGACCACCGGCAGGATGTTGAGTTCCCAGAGCACTTCCTGCAGCCACTTGTCCCCCTGCCCTTTGCGGGTTTCATGGC 62% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000061390.9 |
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| CDS-3UTR CAA 90 bp | GTTTATCCCTTCCTAGAAGGGAGGGGGAAGGCGGGGAACAGGTGCAGAGGGCTGCAGCGCGCGCTCTCCTaGCTGCAGCCAAACCACTCT | + |
|
Preference number: 5 (lower is better) Translates to: VYPFLEGRGKAGNRCRGLQRALS*LQPNHS Trigger: AGAGTGGTTTGGCTGCAGCAAGGAGAGCGCGCGCTG...CAGCCCTCTGCACCTGTTCCCCGCCTTCCCCCTCCCTTCTAGGAAGGGATAAAC 62% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000061390.9 |
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| CDS CCA 90 bp | GGCCAATGGCAGAAGTCCGGCGGGGACCCCGGGCCCGGGAGTTTCTaGGCTGGTGTTGTAGCCATGACACATAGAAGAAGACTAGGAGGT | + |
|
Preference number: 5 (lower is better) Translates to: GQWQKSGGDPGPGSF*AGVVAMTHRRRLGG Trigger: ACCTCCTAGTCTTCTTCTATGTGTCATGGCTACAACACCAGCCCAGAAACTCCCGGGCCCGGGGTCCCCGCCGGACTTCTGCCATTGGCC 61% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000061390.9 ENSMUST00000206259.2 |
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| CDS CCA 90 bp | GAAACCCGCAAAGGGCAGGGGGACAAGTGGCTGCAGGAAGTGCTCTaGGAACTCAACATCCTGCCGGTGGTCCAGCCACGTGTCCTTGGT | + |
|
Preference number: 5 (lower is better) Translates to: ETRKGQGDKWLQEVL*ELNILPVVQPRVLG Trigger: ACCAAGGACACGTGGCTGGACCACCGGCAGGATGTTGAGTTCCCAGAGCACTTCCTGCAGCCACTTGTCCCCCTGCCCTTTGCGGGTTTC 61% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000061390.9 |
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| CDS CCA 90 bp | GTTAGGGGCCTGTGCCATGAAACCCGCAAAGGGCAGGGGGACAAGTaGCTGCAGGAAGTGCTCTGGGAACTCAACATCCTGCCGGTGGTC | + |
|
Preference number: 5 (lower is better) Translates to: VRGLCHETRKGQGDK*LQEVLWELNILPVV Trigger: GACCACCGGCAGGATGTTGAGTTCCCAGAGCACTTCCTGCAGCCACTTGTCCCCCTGCCCTTTGCGGGTTTCATGGCACAGGCCCCTAAC 61% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000061390.9 |
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| CDS GCA 90 bp | AGGGGGACAAGTGGCTGCAGGAAGTGCTCTGGGAACTCAACATCCTaGCGGTGGTCCAGCCACGTGTCCTTGGTCATAACCCCATTGCGG | + |
|
Preference number: 5 (lower is better) Translates to: RGTSGCRKCSGNSTS*RWSSHVSLVITPLR Trigger: CCGCAATGGGGTTATGACCAAGGACACGTGGCTGGACCACCGGCAGGATGTTGAGTTCCCAGAGCACTTCCTGCAGCCACTTGTCCCCCT 60% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000061390.9 |
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| CDS GCA 90 bp | CCCAAACTTCAGCTCCAGGAAGCGGCGGTAGTTGTTAGGGGCCTGTaGCATGAAACCCGCAAAGGGCAGGGGGACAAGTGGCTGCAGGAA | + |
|
Preference number: 5 (lower is better) Translates to: PKLQLQEAAVVVRGL*HETRKGQGDKWLQE Trigger: TTCCTGCAGCCACTTGTCCCCCTGCCCTTTGCGGGTTTCATGGCACAGGCCCCTAACAACTACCGCCGCTTCCTGGAGCTGAAGTTTGGG 60% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000061390.9 |
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| CDS-3UTR CAA 90 bp | CAGAGCCCTAAAGACTCCCTGGGCTTTTCTATCAAAGGCCACCACTTTCCTCCCAGGGGCACCGAGAGGTaGAAGAGGTCGCGGGAGCGC | + |
|
Preference number: 5 (lower is better) Translates to: QSPKDSLGFSIKGHHFPPRGTER*KRSRER Trigger: GCGCTCCCGCGACCTCTTCAACCTCTCGGTGCCCCT...GGGAGGAAAGTGGTGGCCTTTGATAGAAAAGCCCAGGGAGTCTTTAGGGCTCTG 60% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000061390.9 |
||
| CDS-3UTR CAA 90 bp | CAGAGACTATGCAGAGCCCTAAAGACTCCCTGGGCTTTTCTATCAAAGGCCACCAAGAAGACTAGGAGGTaGAGGATGATGGCGGCTGCC | + |
|
Preference number: 5 (lower is better) Translates to: QRLCRALKTPWAFLSKATKKTRR*RMMAAA Trigger: GGCAGCCGCCATCATCCTCAACCTCCTAGTCTTCTT...GGTGGCCTTTGATAGAAAAGCCCAGGGAGTCTTTAGGGCTCTGCATAGTCTCTG 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000061390.9 |
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| CDS-3UTR CAA 90 bp | AAGGGCCTACAGCTCTTGGAATATAGGGCAGAGACTATGCAGAGCCCTAAAGACTCCACGTGCAGGTGGTaGTTCTCACTGTACTGTACT | + |
|
Preference number: 5 (lower is better) Translates to: KGLQLLEYRAETMQSPKDSTCRW*FSLYCT Trigger: AGTACAGTACAGTGAGAACAACCACCTGCACGTGGA...GTCTTTAGGGCTCTGCATAGTCTCTGCCCTATATTCCAAGAGCTGTAGGCCCTT 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000061390.9 |
||
| CDS GCA 72 bp | TGGCGGTGGCGACCGGGGCGGCCACTAGGCGCGCGCTaGTCCCTCGGAGCGCCTCCACCATTCGCTCCAGGT | + |
|
Preference number: 6 (lower is better) Translates to: WRWRPGRPLGAR*SLGAPPPFAPG Trigger: ACCTGGAGCGAATGGTGGAGGCGCTCCGAGGGAGCAGCGCGCGCCTAGTGGCCGCCCCGGTCGCCACCGCCA 75% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000061390.9 |
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| CDS CCA 72 bp | TTCCGCCTTCCAGCGCGCGTGGGCGGTGGCCAGCGGTaGCTGGCGCGCCGCGGCGAAGGTCAAGTCCAGCAG | + |
|
Preference number: 6 (lower is better) Translates to: FRLPARVGGGQR*LARRGEGQVQQ Trigger: CTGCTGGACTTGACCTTCGCCGCGGCGCGCCAGCCACCGCTGGCCACCGCCCACGCGCGCTGGAAGGCGGAA 75% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000061390.9 |
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| CDS CAA 72 bp | CGCAGGCTGACGTTCAGAGCTAGGCACCGCGCTGGGTaGGCGGTGGCGACCGGGGCGGCCACTAGGCGCGCG | + |
|
Preference number: 6 (lower is better) Translates to: RRLTFRARHRAG*AVATGAATRRA Trigger: CGCGCGCCTAGTGGCCGCCCCGGTCGCCACCGCCAACCCAGCGCGGTGCCTAGCTCTGAACGTCAGCCTGCG 75% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000061390.9 |
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| CDS GCA 72 bp | GGCTGGCGCGCCGCGGCGAAGGTCAAGTCCAGCAGCTaGACTGCCCAGCCGCGCAGGGCGGTCTGTAGGAAG | + |
|
Preference number: 6 (lower is better) Translates to: GWRAAAKVKSSS*TAQPRRAVCRK Trigger: CTTCCTACAGACCGCCCTGCGCGGCTGGGCAGTGCAGCTGCTGGACTTGACCTTCGCCGCGGCGCGCCAGCC 72% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000061390.9 |
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| CDS CCA 72 bp | GCCATCCAAAGCGTCGCAGCGGGGCGCGCTGGGAGCTaGGTCGTAGCGCGCAGTCCACTCCCGCAGGCTGAC | + |
|
Preference number: 6 (lower is better) Translates to: AIQSVAAGRAGS*VVARSPLPQAD Trigger: GTCAGCCTGCGGGAGTGGACTGCGCGCTACGACCCAGCTCCCAGCGCGCCCCGCTGCGACGCTTTGGATGGC 72% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000061390.9 |
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| CDS CCA 72 bp | CAGCGTCGCCATCCAAAGCGTCGCAGCGGGGCGCGCTaGGAGCTGGGTCGTAGCGCGCAGTCCACTCCCGCA | + |
|
Preference number: 6 (lower is better) Translates to: QRRHPKRRSGAR*ELGRSAQSTPA Trigger: TGCGGGAGTGGACTGCGCGCTACGACCCAGCTCCCAGCGCGCCCCGCTGCGACGCTTTGGATGGCGACGCTG 72% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000061390.9 |
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| CDS CAA 72 bp | CTGGTGGCCAGCGGCCGCGCCAGGGGCACCGAGAGGTaGAAGAGGTCGCGGGAGCGCATCAGCAGCACAGCG | + |
|
Preference number: 6 (lower is better) Translates to: LVASGRARGTER*KRSRERISSTA Trigger: CGCTGTGCTGCTGATGCGCTCCCGCGACCTCTTCAACCTCTCGGTGCCCCTGGCGCGGCCGCTGGCCACCAG 72% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000061390.9 |
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| CDS TCA 72 bp | TGGTGGCCAGCGGCCGCGCCAGGGGCACCGAGAGGTTaGAGAGGTCGCGGGAGCGCATCAGCAGCACAGCGT | + |
|
Preference number: 6 (lower is better) Translates to: WWPAAAPGAPRG*RGRGSASAAQR Trigger: ACGCTGTGCTGCTGATGCGCTCCCGCGACCTCTTCAACCTCTCGGTGCCCCTGGCGCGGCCGCTGGCCACCA 71% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000061390.9 |
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| CDS TCA 72 bp | ACGGATTCCCAACGAGCGCAGCAGCGCCGCTCTCCGTaGGCGCCCCTCACGTTCCGCCTTCCAGCGCGCGTG | + |
|
Preference number: 6 (lower is better) Translates to: TDSQRAQQRRSP*APLTFRLPARV Trigger: CACGCGCGCTGGAAGGCGGAACGTGAGGGGCGCTCACGGAGAGCGGCGCTGCTGCGCTCGTTGGGAATCCGT 71% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000061390.9 |
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| CDS CCA 72 bp | GCGCGCAGTCTCGCGCAGCGCGCGCAGGCAACAAGGTaGGGTCCAGCGGCCCTCATACAGGTAGGCGGGTGT | + |
|
Preference number: 6 (lower is better) Translates to: ARSLAQRAQATR*GPAALIQVGGC Trigger: ACACCCGCCTACCTGTATGAGGGCCGCTGGACCCCACCTTGTTGCCTGCGCGCGCTGCGCGAGACTGCGCGC 71% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000061390.9 |
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| CDS CAA 90 bp | GCGGGTGTGTCGCCCGCCACCGTACCGAAGCAGCGCGCGCTCTCCTaGCTGCAGCCAAACCACTCTAGCCGCCCGCCTTCCCAGCTCACC | + |
|
Preference number: 6 (lower is better) Translates to: AGVSPATVPKQRALS*LQPNHSSRPPSQLT Trigger: GGTGAGCTGGGAAGGCGGGCGGCTAGAGTGGTTTGGCTGCAGCAAGGAGAGCGCGCGCTGCTTCGGTACGGTGGCGGGCGACACACCCGC 70% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000061390.9 |
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| CDS GCA 72 bp | CCGCCACCGTACCGAAGCAGCGCGCGCTCTCCTTGCTaGAGCCAAACCACTCTAGCCGCCCGCCTTCCCAGC | + |
|
Preference number: 6 (lower is better) Translates to: PPPYRSSARSPC*SQTTLAARLPS Trigger: GCTGGGAAGGCGGGCGGCTAGAGTGGTTTGGCTGCAGCAAGGAGAGCGCGCGCTGCTTCGGTACGGTGGCGG 69% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000061390.9 |
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| CDS CCA 72 bp | CCCGCGCTCCATCAGGCACTAGAGCCACAAACTCGGTaGCTACGTAGGTCTCCGGGCGCGAGGCCGCCGCTG | + |
|
Preference number: 6 (lower is better) Translates to: PALHQALEPQTR*LRRSPGARPPL Trigger: CAGCGGCGGCCTCGCGCCCGGAGACCTACGTAGCCACCGAGTTTGTGGCTCTAGTGCCTGATGGAGCGCGGG 69% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000061390.9 |
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| CDS CCA 72 bp | CTGCTCCCTCGGAGCGCCTCCACCATTCGCTCCAGGTaGCCTGGTGACTCGGCCCGCGCTCCATCAGGCACT | + |
|
Preference number: 6 (lower is better) Translates to: LLPRSASTIRSR*PGDSARAPSGT Trigger: AGTGCCTGATGGAGCGCGGGCCGAGTCACCAGGCCACCTGGAGCGAATGGTGGAGGCGCTCCGAGGGAGCAG 69% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000061390.9 |
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| CDS CAA 72 bp | TCGCCCGCCACCGTACCGAAGCAGCGCGCGCTCTCCTaGCTGCAGCCAAACCACTCTAGCCGCCCGCCTTCC | + |
|
Preference number: 6 (lower is better) Translates to: SPATVPKQRALS*LQPNHSSRPPS Trigger: GGAAGGCGGGCGGCTAGAGTGGTTTGGCTGCAGCAAGGAGAGCGCGCGCTGCTTCGGTACGGTGGCGGGCGA 69% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000061390.9 |
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| CDS CCA 72 bp | CAGGCGAACGTTGGGGATGCGAGGCAAGGCCAGGGGTaGGTAAGGGAGTGTGTCGGCCGCCACTACCACGGG | + |
|
Preference number: 6 (lower is better) Translates to: QANVGDARQGQG*VRECVGRHYHG Trigger: CCCGTGGTAGTGGCGGCCGACACACTCCCTTACCCACCCCTGGCCTTGCCTCGCATCCCCAACGTTCGCCTG 68% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000061390.9 ENSMUST00000206259.2 |
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| CDS GCA 72 bp | GTCGTAGTCCCAAGGGATGATGTCGCCGTGGCGAGCTaGACCCAGCAGCGAGCCGCCCTCCAACCAGTAGCG | + |
|
Preference number: 6 (lower is better) Translates to: VVVPRDDVAVAS*TQQRAALQPVA Trigger: CGCTACTGGTTGGAGGGCGGCTCGCTGCTGGGTGCAGCTCGCCACGGCGACATCATCCCTTGGGACTACGAC 67% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000061390.9 |
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| CDS GCA 72 bp | CCGAGCCAGCTTCGGCACCCCGCAACTGCTCGCAGTTaGCCACGTCCTCCAGGTAGATGCCCAGATCTACGT | + |
|
Preference number: 6 (lower is better) Translates to: PSQLRHPATARS*PRPPGRCPDLR Trigger: ACGTAGATCTGGGCATCTACCTGGAGGACGTGGGCAACTGCGAGCAGTTGCGGGGTGCCGAAGCTGGCTCGG 64% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000061390.9 |
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| CDS GCA 72 bp | CCCGCAAAGGGCAGGGGGACAAGTGGCTGCAGGAAGTaGTCTGGGAACTCAACATCCTGCCGGTGGTCCAGC | + |
|
Preference number: 6 (lower is better) Translates to: PAKGRGTSGCRK*SGNSTSCRWSS Trigger: GCTGGACCACCGGCAGGATGTTGAGTTCCCAGAGCACTTCCTGCAGCCACTTGTCCCCCTGCCCTTTGCGGG 64% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000061390.9 |
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| CDS TCA 72 bp | GGTAGATGCCCAGATCTACGTCGTAGTCCCAAGGGATaGTGTCGCCGTGGCGAGCTGCACCCAGCAGCGAGC | + |
|
Preference number: 6 (lower is better) Translates to: GRCPDLRRSPKG*CRRGELHPAAS Trigger: GCTCGCTGCTGGGTGCAGCTCGCCACGGCGACATCATCCCTTGGGACTACGACGTAGATCTGGGCATCTACC 62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000061390.9 |
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| CDS GCA 72 bp | CAGCTCCAGGAAGCGGCGGTAGTTGTTAGGGGCCTGTaGCATGAAACCCGCAAAGGGCAGGGGGACAAGTGG | + |
|
Preference number: 6 (lower is better) Translates to: QLQEAAVVVRGL*HETRKGQGDKW Trigger: CCACTTGTCCCCCTGCCCTTTGCGGGTTTCATGGCACAGGCCCCTAACAACTACCGCCGCTTCCTGGAGCTG 62% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000061390.9 |
||
| CDS GCA 72 bp | GCCATGAAACCCGCAAAGGGCAGGGGGACAAGTGGCTaGAGGAAGTGCTCTGGGAACTCAACATCCTGCCGG | + |
|
Preference number: 6 (lower is better) Translates to: AMKPAKGRGTSG*RKCSGNSTSCR Trigger: CCGGCAGGATGTTGAGTTCCCAGAGCACTTCCTGCAGCCACTTGTCCCCCTGCCCTTTGCGGGTTTCATGGC 61% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000061390.9 |
||
| CDS CCA 72 bp | CAGAAGTCCGGCGGGGACCCCGGGCCCGGGAGTTTCTaGGCTGGTGTTGTAGCCATGACACATAGAAGAAGA | + |
|
Preference number: 6 (lower is better) Translates to: QKSGGDPGPGSF*AGVVAMTHRRR Trigger: TCTTCTTCTATGTGTCATGGCTACAACACCAGCCCAGAAACTCCCGGGCCCGGGGTCCCCGCCGGACTTCTG 61% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000061390.9 ENSMUST00000206259.2 |
||
| CDS CCA 72 bp | AAAGGGCAGGGGGACAAGTGGCTGCAGGAAGTGCTCTaGGAACTCAACATCCTGCCGGTGGTCCAGCCACGT | + |
|
Preference number: 6 (lower is better) Translates to: KGQGDKWLQEVL*ELNILPVVQPR Trigger: ACGTGGCTGGACCACCGGCAGGATGTTGAGTTCCCAGAGCACTTCCTGCAGCCACTTGTCCCCCTGCCCTTT 61% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000061390.9 |
||
| CDS GCA 72 bp | AGTGGCTGCAGGAAGTGCTCTGGGAACTCAACATCCTaGCGGTGGTCCAGCCACGTGTCCTTGGTCATAACC | + |
|
Preference number: 6 (lower is better) Translates to: SGCRKCSGNSTS*RWSSHVSLVIT Trigger: GGTTATGACCAAGGACACGTGGCTGGACCACCGGCAGGATGTTGAGTTCCCAGAGCACTTCCTGCAGCCACT 58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000061390.9 |
||
| CDS CCA 72 bp | CTGTGCCATGAAACCCGCAAAGGGCAGGGGGACAAGTaGCTGCAGGAAGTGCTCTGGGAACTCAACATCCTG | + |
|
Preference number: 6 (lower is better) Translates to: LCHETRKGQGDK*LQEVLWELNIL Trigger: CAGGATGTTGAGTTCCCAGAGCACTTCCTGCAGCCACTTGTCCCCCTGCCCTTTGCGGGTTTCATGGCACAG 58% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000061390.9 |
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| CDS CAA 90 bp | GCTGGGTCCTGCTGCAAAAAGGAATCCACTAGCTCTGGCACCGCGTaGTCAAAAGCCTCAAATTCCCGAATCAGGACGGTGACTCGGGGG | + |
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Preference number: 6 (lower is better) Translates to: AGSCCKKESTSSGTA*SKASNSRIRTVTRG Trigger: CCCCCGAGTCACCGTCCTGATTCGGGAATTTGAGGCTTTTGACAACGCGGTGCCAGAGCTAGTGGATTCCTTTTTGCAGCAGGACCCAGC 57% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENSMUST00000061390.9 ENSMUST00000206259.2 |
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| CDS CCA 72 bp | TGCAGGAAGTGCTCTGGGAACTCAACATCCTGCCGGTaGTCCAGCCACGTGTCCTTGGTCATAACCCCATTG | + |
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Preference number: 6 (lower is better) Translates to: CRKCSGNSTSCR*SSHVSLVITPL Trigger: CAATGGGGTTATGACCAAGGACACGTGGCTGGACCACCGGCAGGATGTTGAGTTCCCAGAGCACTTCCTGCA 57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000061390.9 |
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