Pregenerated sensors for FKBP3 (Mus musculus)
Ensembl gene IDs: ENSMUSG00000020949Ensembl transcript IDs: ENSMUST00000021332.10, ENSMUST00000220730.2, ENSMUST00000220983.2, ENSMUST00000221166.2, ENSMUST00000221608.2, ENSMUST00000221913.2
Found 39 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR-3UTR CCA 90 bp | CACAGCTCATTTTTATGTTTGCTGATGTCCGATCTGAAGTACTGGTTTCAGTCAGAGTCTCTTCAGACTTaGAGTCTTTGGGTTTGTCGT | + |
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Preference number: 2 (lower is better) Translates to: HSSFLCLLMSDLKYWFQSESLQT*SLWVCR Trigger: ACGACAAACCCAAAGACTCCAAGTCTGAAGAGACTC...TGACTGAAACCAGTACTTCAGATCGGACATCAGCAAACATAAAAATGAGCTGTG 42% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000221166.2 |
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| 3UTR-3UTR TCA 90 bp | ATCCATGACACTTTTATTGAGTCTTCTAGTTTACAAGGTAAAAGGAAAGCAGCTCCTGTATACCAGCAGTaGACAACATCCCCCTTTTTA | + |
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Preference number: 2 (lower is better) Translates to: IHDTFIESSSLQGKRKAAPVYQQ*TTSPFL Trigger: TAAAAAGGGGGATGTTGTTCACTGCTGGTATACAGG...AGCTGCTTTCCTTTTACCTTGTAAACTAGAAGACTCAATAAAAGTGTCATGGAT 39% GC, longest homopolymer 5 nt, total homopolymer stretches 18 nt. Matches the following 1 transcripts: ENSMUST00000221166.2 |
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| 3UTR-3UTR CCA 90 bp | CAGTTGACTCTTCCCTTACAAGCTCTAATTAGCCACAGCTCATTTTTATGTTTGAGGAAAGCAGCTCTCTaGAATACTTTACATAGCTGT | + |
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Preference number: 2 (lower is better) Translates to: QLTLPLQALISHSSFLCLRKAAL*NTLHSC Trigger: ACAGCTATGTAAAGTATTCCAGAGAGCTGCTTTCCT...CAAACATAAAAATGAGCTGTGGCTAATTAGAGCTTGTAAGGGAAGAGTCAACTG 39% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 4 transcripts: ENSMUST00000021332.10 ENSMUST00000220983.2 ENSMUST00000221166.2 ENSMUST00000221608.2 |
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| 3UTR-3UTR CAA 90 bp | GGCATCGGGCTGTCCTTTCTTTCCGTAGGCCCATTCTGGTTCGATCTCCAGTCGAGCTCATTTTTATGTTaGCTGATGTCCGATCTGAAG | + |
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Preference number: 3 (lower is better) Translates to: GIGLSFLSVGPFWFDLQSSSFLC*LMSDLK Trigger: CTTCAGATCGGACATCAGCAAACATAAAAATGAGCT...CGACTGGAGATCGAACCAGAATGGGCCTACGGAAAGAAAGGACAGCCCGATGCC 50% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENSMUST00000221166.2 ENSMUST00000221913.2 |
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| 3UTR-3UTR CAA 90 bp | CAGTTGACTCTTCCCTTACAAGCTCTAATTAGCCACAGCTCATTTTTATGTTTGCATCCTCTGATAACCTaGCCTACTCCGACCTTAAAA | + |
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Preference number: 3 (lower is better) Translates to: QLTLPLQALISHSSFLCLHPLIT*PTPTLK Trigger: TTTTAAGGTCGGAGTAGGCAAGGTTATCAGAGGATG...CAAACATAAAAATGAGCTGTGGCTAATTAGAGCTTGTAAGGGAAGAGTCAACTG 41% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000221166.2 |
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| 3UTR-3UTR CAA 90 bp | TTACAAGCTCTAATTAGCCACAGCTCATTTTTATGTTTGCTGATGTCCGATCTGAGCTCATTTTTATGTTaGCTGATGTCCGATCTGAAG | + |
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Preference number: 3 (lower is better) Translates to: LQALISHSSFLCLLMSDLSSFLC*LMSDLK Trigger: CTTCAGATCGGACATCAGCAAACATAAAAATGAGCT...CAGATCGGACATCAGCAAACATAAAAATGAGCTGTGGCTAATTAGAGCTTGTAA 39% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt. Matches the following 5 transcripts: ENSMUST00000021332.10 ENSMUST00000220983.2 ENSMUST00000221166.2 ENSMUST00000221608.2 ENSMUST00000221913.2 |
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| 3UTR-3UTR CAA 90 bp | TCCATGACACTTTTATTGAGTCTTCTAGTTTACAAGGTAAAAGGAAAGCAGCTCAGCTCATTTTTATGTTaGCTGATGTCCGATCTGAAG | + |
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Preference number: 3 (lower is better) Translates to: SMTLLLSLLVYKVKGKQLSSFLC*LMSDLK Trigger: CTTCAGATCGGACATCAGCAAACATAAAAATGAGCT...GAGCTGCTTTCCTTTTACCTTGTAAACTAGAAGACTCAATAAAAGTGTCATGGA 38% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 3 transcripts: ENSMUST00000021332.10 ENSMUST00000221166.2 ENSMUST00000221608.2 |
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| CDS-3UTR GCA 90 bp | TTACAAGCTCTAATTAGCCACAGCTCATTTTTATGTTTGCTGATGTCCGATCTGCTGCTCCACGGTCCATaGACGCTGCGGAACAGCCGC | + |
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Preference number: 4 (lower is better) Translates to: LQALISHSSFLCLLMSDLLLHGP*TLRNSR Trigger: GCGGCTGTTCCGCAGCGTGCATGGACCGTGGAGCAG...CAGATCGGACATCAGCAAACATAAAAATGAGCTGTGGCTAATTAGAGCTTGTAA 50% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 3 transcripts: ENSMUST00000021332.10 ENSMUST00000221166.2 ENSMUST00000221913.2 |
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| CDS-3UTR GCA 90 bp | ATTAGCCACAGCTCATTTTTATGTTTGCTGATGTCCGATCTGAAGTACTGGTTTCTGCTCCACGGTCCATaGACGCTGCGGAACAGCCGC | + |
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Preference number: 4 (lower is better) Translates to: ISHSSFLCLLMSDLKYWFLLHGP*TLRNSR Trigger: GCGGCTGTTCCGCAGCGTGCATGGACCGTGGAGCAG...AAACCAGTACTTCAGATCGGACATCAGCAAACATAAAAATGAGCTGTGGCTAAT 50% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENSMUST00000221166.2 ENSMUST00000221913.2 |
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| CDS-3UTR GCA 90 bp | ACTCTTCCCTTACAAGCTCTAATTAGCCACAGCTCATTTTTATGTTTGCTGATGTGCTCGCTGCGCAGCTaGTCCACGGTCCATGCACGC | + |
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Preference number: 4 (lower is better) Translates to: TLPLQALISHSSFLCLLMCSLRS*STVHAR Trigger: GCGTGCATGGACCGTGGAGCAGCTGCGCAGCGAGCA...CATCAGCAAACATAAAAATGAGCTGTGGCTAATTAGAGCTTGTAAGGGAAGAGT 50% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 3 transcripts: ENSMUST00000021332.10 ENSMUST00000221166.2 ENSMUST00000221913.2 |
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| CDS-3UTR GCA 90 bp | ATTAGCCACAGCTCATTTTTATGTTTGCTGATGTCCGATCTGAAGTACTGGTTTTGCTCGCTGCGCAGCTaGTCCACGGTCCATGCACGC | + |
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Preference number: 4 (lower is better) Translates to: ISHSSFLCLLMSDLKYWFCSLRS*STVHAR Trigger: GCGTGCATGGACCGTGGAGCAGCTGCGCAGCGAGCA...AAACCAGTACTTCAGATCGGACATCAGCAAACATAAAAATGAGCTGTGGCTAAT 50% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENSMUST00000221166.2 ENSMUST00000221913.2 |
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| CDS-3UTR GCA 90 bp | TCATTTTTATGTTTGCTGATGTCCGATCTGAAGTACTGGTTTCAGTCAATGTCTCTGCTCCACGGTCCATaGACGCTGCGGAACAGCCGC | + |
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Preference number: 4 (lower is better) Translates to: SFLCLLMSDLKYWFQSMSLLHGP*TLRNSR Trigger: GCGGCTGTTCCGCAGCGTGCATGGACCGTGGAGCAG...AGACATTGACTGAAACCAGTACTTCAGATCGGACATCAGCAAACATAAAAATGA 49% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENSMUST00000221166.2 ENSMUST00000221913.2 |
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| CDS-3UTR CCA 90 bp | TTGACTCTTCCCTTACAAGCTCTAATTAGCCACAGCTCATTTTTATGTTTGCTGTCCGTAGGCCCATTCTaGTTCGATCTCCAGTCGAGC | + |
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Preference number: 4 (lower is better) Translates to: LTLPLQALISHSSFLCLLSVGPF*FDLQSS Trigger: GCTCGACTGGAGATCGAACCAGAATGGGCCTACGGA...CAGCAAACATAAAAATGAGCTGTGGCTAATTAGAGCTTGTAAGGGAAGAGTCAA 46% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 3 transcripts: ENSMUST00000021332.10 ENSMUST00000220983.2 ENSMUST00000221608.2 |
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| CDS-3UTR CCA 90 bp | TTACAAGCTCTAATTAGCCACAGCTCATTTTTATGTTTGCTGATGTCCGATCTGTCCGTAGGCCCATTCTaGTTCGATCTCCAGTCGAGC | + |
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Preference number: 4 (lower is better) Translates to: LQALISHSSFLCLLMSDLSVGPF*FDLQSS Trigger: GCTCGACTGGAGATCGAACCAGAATGGGCCTACGGA...CAGATCGGACATCAGCAAACATAAAAATGAGCTGTGGCTAATTAGAGCTTGTAA 46% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 3 transcripts: ENSMUST00000021332.10 ENSMUST00000220983.2 ENSMUST00000221608.2 |
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| CDS-3UTR CCA 90 bp | CTTCCCTTACAAGCTCTAATTAGCCACAGCTCATTTTTATGTTTGCTGATGTCCGAGCTTGGTGTTTGGTaGAATTTTGGCATCGGGCTG | + |
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Preference number: 4 (lower is better) Translates to: LPLQALISHSSFLCLLMSELGVW*NFGIGL Trigger: CAGCCCGATGCCAAAATTCCACCAAACACCAAGCTC...GGACATCAGCAAACATAAAAATGAGCTGTGGCTAATTAGAGCTTGTAAGGGAAG 44% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENSMUST00000021332.10 ENSMUST00000220983.2 |
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| CDS-3UTR TCA 90 bp | CTTCCCTTACAAGCTCTAATTAGCCACAGCTCATTTTTATGTTTGCTGATGTCCCCTGTATACCAGCAGTaGACAACATCCCCCTTTTTA | + |
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Preference number: 4 (lower is better) Translates to: LPLQALISHSSFLCLLMSPVYQQ*TTSPFL Trigger: TAAAAAGGGGGATGTTGTTCACTGCTGGTATACAGG...GGACATCAGCAAACATAAAAATGAGCTGTGGCTAATTAGAGCTTGTAAGGGAAG 42% GC, longest homopolymer 5 nt, total homopolymer stretches 19 nt. Matches the following 1 transcripts: ENSMUST00000021332.10 |
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| CDS-3UTR CCA 90 bp | CCCTTACAAGCTCTAATTAGCCACAGCTCATTTTTATGTTTGCTGATGTCCGATGAGTCTCTTCAGACTTaGAGTCTTTGGGTTTGTCGT | + |
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Preference number: 4 (lower is better) Translates to: PLQALISHSSFLCLLMSDESLQT*SLWVCR Trigger: ACGACAAACCCAAAGACTCCAAGTCTGAAGAGACTC...ATCGGACATCAGCAAACATAAAAATGAGCTGTGGCTAATTAGAGCTTGTAAGGG 42% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENSMUST00000021332.10 ENSMUST00000220983.2 |
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| CDS-3UTR CCA 90 bp | CCCTTACAAGCTCTAATTAGCCACAGCTCATTTTTATGTTTGCTGATGTCCGATTGTTTGGTGGAATTTTaGCATCGGGCTGTCCTTTCT | + |
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Preference number: 4 (lower is better) Translates to: PLQALISHSSFLCLLMSDCLVEF*HRAVLS Trigger: AGAAAGGACAGCCCGATGCCAAAATTCCACCAAACA...ATCGGACATCAGCAAACATAAAAATGAGCTGTGGCTAATTAGAGCTTGTAAGGG 42% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENSMUST00000021332.10 ENSMUST00000220983.2 |
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| CDS-3UTR TCA 90 bp | TCATTTTTATGTTTGCTGATGTCCGATCTGAAGTACTGGTTTCAGTCAATGTCTATTCCACTTCAAAAATaGGTTGGCATCGGGCTGTCC | + |
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Preference number: 4 (lower is better) Translates to: SFLCLLMSDLKYWFQSMSIPLQK*VGIGLS Trigger: GGACAGCCCGATGCCAACTCATTTTTGAAGTGGAAT...AGACATTGACTGAAACCAGTACTTCAGATCGGACATCAGCAAACATAAAAATGA 41% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt. Matches the following 1 transcripts: ENSMUST00000221608.2 |
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| CDS-3UTR CCA 90 bp | TTACAAGCTCTAATTAGCCACAGCTCATTTTTATGTTTGCTGATGTCCGATCTGGAGTCTCTTCAGACTTaGAGTCTTTGGGTTTGTCGT | + |
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Preference number: 4 (lower is better) Translates to: LQALISHSSFLCLLMSDLESLQT*SLWVCR Trigger: ACGACAAACCCAAAGACTCCAAGTCTGAAGAGACTC...CAGATCGGACATCAGCAAACATAAAAATGAGCTGTGGCTAATTAGAGCTTGTAA 41% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENSMUST00000021332.10 ENSMUST00000220983.2 |
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| CDS-3UTR CCA 90 bp | TTCCAGTTGACTCTTCCCTTACAAGCTCTAATTAGCCACAGCTCATTTTTATGTAATGAGCTTGGTGTTTaGTGGAATTTTGGCATCGGG | + |
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Preference number: 4 (lower is better) Translates to: FQLTLPLQALISHSSFLCNELGV*WNFGIG Trigger: CCCGATGCCAAAATTCCACCAAACACCAAGCTCATT...ACATAAAAATGAGCTGTGGCTAATTAGAGCTTGTAAGGGAAGAGTCAACTGGAA 41% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENSMUST00000021332.10 ENSMUST00000220983.2 |
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| CDS-3UTR CCA 90 bp | TCCATGACACTTTTATTGAGTCTTCTAGTTTACAAGGTAAAAGGAAAGCAGCTCTGTTTGGTGGAATTTTaGCATCGGGCTGTCCTTTCT | + |
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Preference number: 4 (lower is better) Translates to: SMTLLLSLLVYKVKGKQLCLVEF*HRAVLS Trigger: AGAAAGGACAGCCCGATGCCAAAATTCCACCAAACA...GAGCTGCTTTCCTTTTACCTTGTAAACTAGAAGACTCAATAAAAGTGTCATGGA 40% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 1 transcripts: ENSMUST00000021332.10 |
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| CDS-3UTR CCA 90 bp | AGTCAGTCAAGACAATCCATGACACTTTTATTGAGTCTTCTAGTTTACAAGGTAAATGAGCTTGGTGTTTaGTGGAATTTTGGCATCGGG | + |
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Preference number: 4 (lower is better) Translates to: SQSRQSMTLLLSLLVYKVNELGV*WNFGIG Trigger: CCCGATGCCAAAATTCCACCAAACACCAAGCTCATT...TACCTTGTAAACTAGAAGACTCAATAAAAGTGTCATGGATTGTCTTGACTGACT 39% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000021332.10 |
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| CDS-3UTR CCA 90 bp | GTCAAGACAATCCATGACACTTTTATTGAGTCTTCTAGTTTACAAGGTAAAAGGTTTTGTGTATTTTGGTaGACCCTCATCAAGAGTCTC | + |
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Preference number: 4 (lower is better) Translates to: VKTIHDTFIESSSLQGKRFCVFW*TLIKSL Trigger: GAGACTCTTGATGAGGGTCCACCAAAATACACAAAA...CCTTTTACCTTGTAAACTAGAAGACTCAATAAAAGTGTCATGGATTGTCTTGAC 37% GC, longest homopolymer 4 nt, total homopolymer stretches 16 nt. Matches the following 1 transcripts: ENSMUST00000021332.10 |
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| CDS-3UTR CAA 90 bp | CTTCCCTTACAAGCTCTAATTAGCCACAGCTCATTTTTATGTTTGCTGATGTCCTTGATAATGTCCTTCTaGGGCAGCTGCTCGCTGCGC | + |
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Preference number: 5 (lower is better) Translates to: LPLQALISHSSFLCLLMSLIMSF*GSCSLR Trigger: GCGCAGCGAGCAGCTGCCCAAGAAGGACATTATCAA...GGACATCAGCAAACATAAAAATGAGCTGTGGCTAATTAGAGCTTGTAAGGGAAG 47% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 4 transcripts: ENSMUST00000021332.10 ENSMUST00000220983.2 ENSMUST00000221166.2 ENSMUST00000221913.2 |
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| CDS-3UTR CAA 90 bp | CAAGCTCTAATTAGCCACAGCTCATTTTTATGTTTGCTGATGTCCGATCTGAAGTTGATAATGTCCTTCTaGGGCAGCTGCTCGCTGCGC | + |
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Preference number: 5 (lower is better) Translates to: QALISHSSFLCLLMSDLKLIMSF*GSCSLR Trigger: GCGCAGCGAGCAGCTGCCCAAGAAGGACATTATCAA...CTTCAGATCGGACATCAGCAAACATAAAAATGAGCTGTGGCTAATTAGAGCTTG 47% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 4 transcripts: ENSMUST00000021332.10 ENSMUST00000220983.2 ENSMUST00000221166.2 ENSMUST00000221913.2 |
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| CDS-3UTR CAA 90 bp | TCCATGACACTTTTATTGAGTCTTCTAGTTTACAAGGTAAAAGGAAAGCAGCTCTTGATAATGTCCTTCTaGGGCAGCTGCTCGCTGCGC | + |
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Preference number: 5 (lower is better) Translates to: SMTLLLSLLVYKVKGKQLLIMSF*GSCSLR Trigger: GCGCAGCGAGCAGCTGCCCAAGAAGGACATTATCAA...GAGCTGCTTTCCTTTTACCTTGTAAACTAGAAGACTCAATAAAAGTGTCATGGA 44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000021332.10 ENSMUST00000221166.2 |
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| CDS-3UTR CAA 90 bp | CCCTTACAAGCTCTAATTAGCCACAGCTCATTTTTATGTTTGCTGATGTCCGATGTGTTTGGTGGAATTTaGGCATCGGGCTGTCCTTTC | + |
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Preference number: 5 (lower is better) Translates to: PLQALISHSSFLCLLMSDVFGGI*ASGCPF Trigger: GAAAGGACAGCCCGATGCCAAAATTCCACCAAACAC...ATCGGACATCAGCAAACATAAAAATGAGCTGTGGCTAATTAGAGCTTGTAAGGG 44% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENSMUST00000021332.10 ENSMUST00000220983.2 |
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| CDS-3UTR CAA 90 bp | ACTCTTCCCTTACAAGCTCTAATTAGCCACAGCTCATTTTTATGTTTGCTGATGGTGTTTGGTGGAATTTaGGCATCGGGCTGTCCTTTC | + |
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Preference number: 5 (lower is better) Translates to: TLPLQALISHSSFLCLLMVFGGI*ASGCPF Trigger: GAAAGGACAGCCCGATGCCAAAATTCCACCAAACAC...CATCAGCAAACATAAAAATGAGCTGTGGCTAATTAGAGCTTGTAAGGGAAGAGT 43% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENSMUST00000021332.10 ENSMUST00000220983.2 |
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| CDS-3UTR CAA 90 bp | CAAGCTCTAATTAGCCACAGCTCATTTTTATGTTTGCTGATGTCCGATCTGAAGCACTTCAAAAATGAGTaGGCATCGGGCTGTCCTTTC | + |
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Preference number: 5 (lower is better) Translates to: QALISHSSFLCLLMSDLKHFKNE*ASGCPF Trigger: GAAAGGACAGCCCGATGCCAACTCATTTTTGAAGTG...CTTCAGATCGGACATCAGCAAACATAAAAATGAGCTGTGGCTAATTAGAGCTTG 43% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt. Matches the following 1 transcripts: ENSMUST00000221608.2 |
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| CDS-3UTR CAA 90 bp | CCCTTACAAGCTCTAATTAGCCACAGCTCATTTTTATGTTTGCTGATGTCCGATTTGGAGTCTTTGGGTTaGTCGTCACTAAGCTTCACA | + |
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Preference number: 5 (lower is better) Translates to: PLQALISHSSFLCLLMSDLESLG*SSLSFT Trigger: TGTGAAGCTTAGTGACGACAAACCCAAAGACTCCAA...ATCGGACATCAGCAAACATAAAAATGAGCTGTGGCTAATTAGAGCTTGTAAGGG 42% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENSMUST00000021332.10 ENSMUST00000220983.2 |
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| CDS-3UTR CAA 90 bp | TTACAAGCTCTAATTAGCCACAGCTCATTTTTATGTTTGCTGATGTCCGATCTGAGAGTCTCTTCAGACTaGGAGTCTTTGGGTTTGTCG | + |
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Preference number: 5 (lower is better) Translates to: LQALISHSSFLCLLMSDLRVSSD*ESLGLS Trigger: CGACAAACCCAAAGACTCCAAGTCTGAAGAGACTCT...CAGATCGGACATCAGCAAACATAAAAATGAGCTGTGGCTAATTAGAGCTTGTAA 42% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENSMUST00000021332.10 ENSMUST00000220983.2 |
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| CDS-3UTR CAA 90 bp | CAAGCTCTAATTAGCCACAGCTCATTTTTATGTTTGCTGATGTCCGATCTGAAGCATCCTCTGATAACCTaGCCTACTCCGACCTTAAAA | + |
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Preference number: 5 (lower is better) Translates to: QALISHSSFLCLLMSDLKHPLIT*PTPTLK Trigger: TTTTAAGGTCGGAGTAGGCAAGGTTATCAGAGGATG...CTTCAGATCGGACATCAGCAAACATAAAAATGAGCTGTGGCTAATTAGAGCTTG 42% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENSMUST00000021332.10 ENSMUST00000221608.2 |
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| CDS-3UTR CAA 90 bp | CATGACACTTTTATTGAGTCTTCTAGTTTACAAGGTAAAAGGAAAGCAGCTCTCTTGGAGTCTTTGGGTTaGTCGTCACTAAGCTTCACA | + |
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Preference number: 5 (lower is better) Translates to: HDTFIESSSLQGKRKAALLESLG*SSLSFT Trigger: TGTGAAGCTTAGTGACGACAAACCCAAAGACTCCAA...GAGAGCTGCTTTCCTTTTACCTTGTAAACTAGAAGACTCAATAAAAGTGTCATG 40% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000021332.10 |
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| CDS-3UTR CAA 90 bp | ATCCATGACACTTTTATTGAGTCTTCTAGTTTACAAGGTAAAAGGAAAGCAGCTAGAGTCTCTTCAGACTaGGAGTCTTTGGGTTTGTCG | + |
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Preference number: 5 (lower is better) Translates to: IHDTFIESSSLQGKRKAARVSSD*ESLGLS Trigger: CGACAAACCCAAAGACTCCAAGTCTGAAGAGACTCT...AGCTGCTTTCCTTTTACCTTGTAAACTAGAAGACTCAATAAAAGTGTCATGGAT 40% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000021332.10 |
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| CDS-3UTR CAA 90 bp | TCCATGACACTTTTATTGAGTCTTCTAGTTTACAAGGTAAAAGGAAAGCAGCTCCATCCTCTGATAACCTaGCCTACTCCGACCTTAAAA | + |
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Preference number: 5 (lower is better) Translates to: SMTLLLSLLVYKVKGKQLHPLIT*PTPTLK Trigger: TTTTAAGGTCGGAGTAGGCAAGGTTATCAGAGGATG...GAGCTGCTTTCCTTTTACCTTGTAAACTAGAAGACTCAATAAAAGTGTCATGGA 40% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000021332.10 ENSMUST00000221608.2 |
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| CDS-3UTR CAA 90 bp | CTTCCCTTACAAGCTCTAATTAGCCACAGCTCATTTTTATGTTTGCTGATGTCCACTTCAAAAATGAGCTaGGTGTTTGGTGGAATTTTG | + |
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Preference number: 5 (lower is better) Translates to: LPLQALISHSSFLCLLMSTSKMS*VFGGIL Trigger: CAAAATTCCACCAAACACCAAGCTCATTTTTGAAGT...GGACATCAGCAAACATAAAAATGAGCTGTGGCTAATTAGAGCTTGTAAGGGAAG 39% GC, longest homopolymer 5 nt, total homopolymer stretches 14 nt. Matches the following 2 transcripts: ENSMUST00000021332.10 ENSMUST00000220983.2 |
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| CDS-3UTR CAA 90 bp | CAAGCTCTAATTAGCCACAGCTCATTTTTATGTTTGCTGATGTCCGATCTGAAGACTTCAAAAATGAGCTaGGTGTTTGGTGGAATTTTG | + |
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Preference number: 5 (lower is better) Translates to: QALISHSSFLCLLMSDLKTSKMS*VFGGIL Trigger: CAAAATTCCACCAAACACCAAGCTCATTTTTGAAGT...CTTCAGATCGGACATCAGCAAACATAAAAATGAGCTGTGGCTAATTAGAGCTTG 39% GC, longest homopolymer 5 nt, total homopolymer stretches 14 nt. Matches the following 2 transcripts: ENSMUST00000021332.10 ENSMUST00000220983.2 |
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| CDS GCA 72 bp | ATAATGTCCTTCTTGGGCAGCTGCTCGCTGCGCAGCTaGTCCACGGTCCATGCACGCTGCGGAACAGCCGCC | + |
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Preference number: 6 (lower is better) Translates to: IMSFLGSCSLRS*STVHARCGTAA Trigger: GGCGGCTGTTCCGCAGCGTGCATGGACCGTGGAGCAGCTGCGCAGCGAGCAGCTGCCCAAGAAGGACATTAT 64% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 4 transcripts: ENSMUST00000021332.10 ENSMUST00000220730.2 ENSMUST00000221166.2 ENSMUST00000221913.2 |
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