Pregenerated sensors for FKBP1A (Mus musculus)
Ensembl gene IDs: ENSMUSG00000032966Ensembl transcript IDs: ENSMUST00000044011.12, ENSMUST00000142271.2
Found 17 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
Type | Sensor | Details |
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3UTR-3UTR GCA 90 bp | ATCTGCTTTAAAAGGCAGCTAGTTTCAGAAGGTGGAAGGACTGTCAGAAGCCAACATGGCAGATCCACGTaGAGAGCTAAGGGAGGAGGC | + |
Preference number: 2 (lower is better) Translates to: ICFKRQLVSEGGRTVRSQHGRST*RAKGGG Trigger: GCCTCCTCCCTTAGCTCTGCACGTGGATCTGCCATG...TTGGCTTCTGACAGTCCTTCCACCTTCTGAAACTAGCTGCCTTTTAAAGCAGAT 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000044011.12 ENSMUST00000142271.2 |
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3UTR-3UTR CCA 90 bp | AACAGGACCTCCCTCACTAGAGAAAAATCCAGCCCTCAACAGCATCTCGAATCTTACCAGATTCCTCCATaGCAGATCCACGTGCAGAGC | + |
Preference number: 2 (lower is better) Translates to: NRTSLTREKSSPQQHLESYQIPP*QIHVQS Trigger: GCTCTGCACGTGGATCTGCCATGGAGGAATCTGGTA...AGATTCGAGATGCTGTTGAGGGCTGGATTTTTCTCTAGTGAGGGAGGTCCTGTT 50% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENSMUST00000044011.12 ENSMUST00000142271.2 |
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3UTR-3UTR CCA 90 bp | TGCTTTAAAAGGCAGCTAGTTTCAGAAGGTGGAAGGACTGTCAGAAGCCAAGGCTACCAGATTCCTCCATaGCAGATCCACGTGCAGAGC | + |
Preference number: 2 (lower is better) Translates to: CFKRQLVSEGGRTVRSQGYQIPP*QIHVQS Trigger: GCTCTGCACGTGGATCTGCCATGGAGGAATCTGGTA...GCCTTGGCTTCTGACAGTCCTTCCACCTTCTGAAACTAGCTGCCTTTTAAAGCA 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000044011.12 ENSMUST00000142271.2 |
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3UTR-3UTR CCA 90 bp | AACAGGACCTCCCTCACTAGAGAAAAATCCAGCCCTCAACAGCATCTCGAATCTCTATACAAAGGGTGGTaGGACGTCAGGAAGAGCTCC | + |
Preference number: 2 (lower is better) Translates to: NRTSLTREKSSPQQHLESLYKGW*DVRKSS Trigger: GGAGCTCTTCCTGACGTCCCACCACCCTTTGTATAG...AGATTCGAGATGCTGTTGAGGGCTGGATTTTTCTCTAGTGAGGGAGGTCCTGTT 50% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENSMUST00000044011.12 ENSMUST00000142271.2 |
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3UTR-3UTR CCA 90 bp | TGCTTTAAAAGGCAGCTAGTTTCAGAAGGTGGAAGGACTGTCAGAAGCCAAGGCCTATACAAAGGGTGGTaGGACGTCAGGAAGAGCTCC | + |
Preference number: 2 (lower is better) Translates to: CFKRQLVSEGGRTVRSQGLYKGW*DVRKSS Trigger: GGAGCTCTTCCTGACGTCCCACCACCCTTTGTATAG...GCCTTGGCTTCTGACAGTCCTTCCACCTTCTGAAACTAGCTGCCTTTTAAAGCA 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000044011.12 ENSMUST00000142271.2 |
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3UTR-3UTR CCA 90 bp | ATCTGCTTTAAAAGGCAGCTAGTTTCAGAAGGTGGAAGGACTGTCAGAAGCCAAATCTCGAATCTGCTATaGCTTTGCAGCACAGCAGCA | + |
Preference number: 2 (lower is better) Translates to: ICFKRQLVSEGGRTVRSQISNLL*LCSTAA Trigger: TGCTGCTGTGCTGCAAAGCCATAGCAGATTCGAGAT...TTGGCTTCTGACAGTCCTTCCACCTTCTGAAACTAGCTGCCTTTTAAAGCAGAT 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000044011.12 ENSMUST00000142271.2 |
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CDS-3UTR TCA 90 bp | TGCTTTAAAAGGCAGCTAGTTTCAGAAGGTGGAAGGACTGTCAGAAGCCAAGGCACAGAGAGGAGGATGTaGGCGGGCTGTCTTGTCTTC | + |
Preference number: 4 (lower is better) Translates to: CFKRQLVSEGGRTVRSQGTERRM*AGCLVF Trigger: GAAGACAAGACAGCCCGCTCACATCCTCCTCTCTGT...GCCTTGGCTTCTGACAGTCCTTCCACCTTCTGAAACTAGCTGCCTTTTAAAGCA 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000142271.2 |
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CDS-3UTR GCA 90 bp | AACAGGACCTCCCTCACTAGAGAAAAATCCAGCCCTCAACAGCATCTCGAATCTTCCCACAACAGCTACTaGGATTTGGTCCATGAGAAG | + |
Preference number: 4 (lower is better) Translates to: NRTSLTREKSSPQQHLESSHNSY*DLVHEK Trigger: CTTCTCATGGACCAAATCGCAGTAGCTGTTGTGGGA...AGATTCGAGATGCTGTTGAGGGCTGGATTTTTCTCTAGTGAGGGAGGTCCTGTT 48% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000142271.2 |
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CDS-3UTR GCA 90 bp | ATCTGCTTTAAAAGGCAGCTAGTTTCAGAAGGTGGAAGGACTGTCAGAAGCCAACTAGTCCTTAACTTCTaGCATCTCCTGCCCGCTTCT | + |
Preference number: 4 (lower is better) Translates to: ICFKRQLVSEGGRTVRSQLVLNF*HLLPAS Trigger: AGAAGCGGGCAGGAGATGGCAGAAGTTAAGGACTAG...TTGGCTTCTGACAGTCCTTCCACCTTCTGAAACTAGCTGCCTTTTAAAGCAGAT 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000142271.2 |
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CDS-3UTR CCA 90 bp | ATCTGCTTTAAAAGGCAGCTAGTTTCAGAAGGTGGAAGGACTGTCAGAAGCCAACAATATTCCTTCCATTaGCAGCTTTTTAAAGGTCCT | + |
Preference number: 4 (lower is better) Translates to: ICFKRQLVSEGGRTVRSQQYSFH*QLFKGP Trigger: AGGACCTTTAAAAAGCTGCCAATGGAAGGAATATTG...TTGGCTTCTGACAGTCCTTCCACCTTCTGAAACTAGCTGCCTTTTAAAGCAGAT 41% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000142271.2 |
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CDS-3UTR CAA 90 bp | AACAGGACCTCCCTCACTAGAGAAAAATCCAGCCCTCAACAGCATCTCGAATCTGAGAAGAGTCTGTTCTaGCCAAGATGTATTTCAATA | + |
Preference number: 5 (lower is better) Translates to: NRTSLTREKSSPQQHLESEKSLF*PRCISI Trigger: TATTGAAATACATCTTGGCAAGAACAGACTCTTCTC...AGATTCGAGATGCTGTTGAGGGCTGGATTTTTCTCTAGTGAGGGAGGTCCTGTT 43% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000142271.2 |
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CDS CAA 72 bp | AAGGGGGCACAGAGAGGAGGATGTGAGCGGGCTGTCTaGTCTTCCCTTCCCTGTAAGTCATTTCCCTCAAGA | + |
Preference number: 6 (lower is better) Translates to: KGAQRGGCERAV*SSLPCKSFPSR Trigger: TCTTGAGGGAAATGACTTACAGGGAAGGGAAGACAAGACAGCCCGCTCACATCCTCCTCTCTGTGCCCCCTT 54% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000142271.2 |
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CDS CAA 90 bp | CATAGAAGTAAGGGGGCACAGAGAGGAGGATGTGAGCGGGCTGTCTaGTCTTCCCTTCCCTGTAAGTCATTTCCCTCAAGATCGGGATCC | + |
Preference number: 6 (lower is better) Translates to: HRSKGAQRGGCERAV*SSLPCKSFPSRSGS Trigger: GGATCCCGATCTTGAGGGAAATGACTTACAGGGAAGGGAAGACAAGACAGCCCGCTCACATCCTCCTCTCTGTGCCCCCTTACTTCTATG 53% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000142271.2 |
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CDS GCA 72 bp | ATTGGCAGCTTTTTAAAGGTCCTAGTCCTTAACTTCTaGCATCTCCTGCCCGCTTCTCTACTCAAGAAGTCA | + |
Preference number: 6 (lower is better) Translates to: IGSFLKVLVLNF*HLLPASLLKKS Trigger: TGACTTCTTGAGTAGAGAAGCGGGCAGGAGATGGCAGAAGTTAAGGACTAGGACCTTTAAAAAGCTGCCAAT 46% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000142271.2 |
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CDS CAA 72 bp | TTCCATCTTCAAGCATCCCACAACAGCTACTGCGATTaGGTCCATGAGAAGAGTCTGTTCTTGCCAAGATGT | + |
Preference number: 6 (lower is better) Translates to: FHLQASHNSYCD*VHEKSLFLPRC Trigger: ACATCTTGGCAAGAACAGACTCTTCTCATGGACCAAATCGCAGTAGCTGTTGTGGGATGCTTGAAGATGGAA 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000142271.2 |
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CDS TCA 72 bp | TCAAGCATCCCACAACAGCTACTGCGATTTGGTCCATaGGAAGAGTCTGTTCTTGCCAAGATGTATTTCAAT | + |
Preference number: 6 (lower is better) Translates to: SSIPQQLLRFGP*EESVLAKMYFN Trigger: ATTGAAATACATCTTGGCAAGAACAGACTCTTCTCATGGACCAAATCGCAGTAGCTGTTGTGGGATGCTTGA 43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000142271.2 |
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CDS CAA 72 bp | AGCTACTGCGATTTGGTCCATGAGAAGAGTCTGTTCTaGCCAAGATGTATTTCAATATTCCTTCCATTGGCA | + |
Preference number: 6 (lower is better) Translates to: SYCDLVHEKSLF*PRCISIFLPLA Trigger: TGCCAATGGAAGGAATATTGAAATACATCTTGGCAAGAACAGACTCTTCTCATGGACCAAATCGCAGTAGCT 42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000142271.2 |