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Pregenerated sensors for FKBP1A (Mus musculus)

Ensembl gene IDs: ENSMUSG00000032966

Ensembl transcript IDs: ENSMUST00000044011.12, ENSMUST00000142271.2

Found 17 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).

Type Sensor Details
3UTR-3UTR GCA 90 bp ATCTGCTTTAAAAGGCAGCTAGTTTCAGAAGGTGGAAGGACTGTCAGAAGCCAACATGGCAGATCCACGTaGAGAGCTAAGGGAGGAGGC +
Preference number: 2 (lower is better)
Translates to: ICFKRQLVSEGGRTVRSQHGRST*RAKGGG
Trigger: GCCTCCTCCCTTAGCTCTGCACGTGGATCTGCCATG...TTGGCTTCTGACAGTCCTTCCACCTTCTGAAACTAGCTGCCTTTTAAAGCAGAT
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000044011.12
ENSMUST00000142271.2
3UTR-3UTR CCA 90 bp AACAGGACCTCCCTCACTAGAGAAAAATCCAGCCCTCAACAGCATCTCGAATCTTACCAGATTCCTCCATaGCAGATCCACGTGCAGAGC +
Preference number: 2 (lower is better)
Translates to: NRTSLTREKSSPQQHLESYQIPP*QIHVQS
Trigger: GCTCTGCACGTGGATCTGCCATGGAGGAATCTGGTA...AGATTCGAGATGCTGTTGAGGGCTGGATTTTTCTCTAGTGAGGGAGGTCCTGTT
50% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000044011.12
ENSMUST00000142271.2
3UTR-3UTR CCA 90 bp TGCTTTAAAAGGCAGCTAGTTTCAGAAGGTGGAAGGACTGTCAGAAGCCAAGGCTACCAGATTCCTCCATaGCAGATCCACGTGCAGAGC +
Preference number: 2 (lower is better)
Translates to: CFKRQLVSEGGRTVRSQGYQIPP*QIHVQS
Trigger: GCTCTGCACGTGGATCTGCCATGGAGGAATCTGGTA...GCCTTGGCTTCTGACAGTCCTTCCACCTTCTGAAACTAGCTGCCTTTTAAAGCA
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000044011.12
ENSMUST00000142271.2
3UTR-3UTR CCA 90 bp AACAGGACCTCCCTCACTAGAGAAAAATCCAGCCCTCAACAGCATCTCGAATCTCTATACAAAGGGTGGTaGGACGTCAGGAAGAGCTCC +
Preference number: 2 (lower is better)
Translates to: NRTSLTREKSSPQQHLESLYKGW*DVRKSS
Trigger: GGAGCTCTTCCTGACGTCCCACCACCCTTTGTATAG...AGATTCGAGATGCTGTTGAGGGCTGGATTTTTCTCTAGTGAGGGAGGTCCTGTT
50% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000044011.12
ENSMUST00000142271.2
3UTR-3UTR CCA 90 bp TGCTTTAAAAGGCAGCTAGTTTCAGAAGGTGGAAGGACTGTCAGAAGCCAAGGCCTATACAAAGGGTGGTaGGACGTCAGGAAGAGCTCC +
Preference number: 2 (lower is better)
Translates to: CFKRQLVSEGGRTVRSQGLYKGW*DVRKSS
Trigger: GGAGCTCTTCCTGACGTCCCACCACCCTTTGTATAG...GCCTTGGCTTCTGACAGTCCTTCCACCTTCTGAAACTAGCTGCCTTTTAAAGCA
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000044011.12
ENSMUST00000142271.2
3UTR-3UTR CCA 90 bp ATCTGCTTTAAAAGGCAGCTAGTTTCAGAAGGTGGAAGGACTGTCAGAAGCCAAATCTCGAATCTGCTATaGCTTTGCAGCACAGCAGCA +
Preference number: 2 (lower is better)
Translates to: ICFKRQLVSEGGRTVRSQISNLL*LCSTAA
Trigger: TGCTGCTGTGCTGCAAAGCCATAGCAGATTCGAGAT...TTGGCTTCTGACAGTCCTTCCACCTTCTGAAACTAGCTGCCTTTTAAAGCAGAT
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000044011.12
ENSMUST00000142271.2
CDS-3UTR TCA 90 bp TGCTTTAAAAGGCAGCTAGTTTCAGAAGGTGGAAGGACTGTCAGAAGCCAAGGCACAGAGAGGAGGATGTaGGCGGGCTGTCTTGTCTTC +
Preference number: 4 (lower is better)
Translates to: CFKRQLVSEGGRTVRSQGTERRM*AGCLVF
Trigger: GAAGACAAGACAGCCCGCTCACATCCTCCTCTCTGT...GCCTTGGCTTCTGACAGTCCTTCCACCTTCTGAAACTAGCTGCCTTTTAAAGCA
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000142271.2
CDS-3UTR GCA 90 bp AACAGGACCTCCCTCACTAGAGAAAAATCCAGCCCTCAACAGCATCTCGAATCTTCCCACAACAGCTACTaGGATTTGGTCCATGAGAAG +
Preference number: 4 (lower is better)
Translates to: NRTSLTREKSSPQQHLESSHNSY*DLVHEK
Trigger: CTTCTCATGGACCAAATCGCAGTAGCTGTTGTGGGA...AGATTCGAGATGCTGTTGAGGGCTGGATTTTTCTCTAGTGAGGGAGGTCCTGTT
48% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000142271.2
CDS-3UTR GCA 90 bp ATCTGCTTTAAAAGGCAGCTAGTTTCAGAAGGTGGAAGGACTGTCAGAAGCCAACTAGTCCTTAACTTCTaGCATCTCCTGCCCGCTTCT +
Preference number: 4 (lower is better)
Translates to: ICFKRQLVSEGGRTVRSQLVLNF*HLLPAS
Trigger: AGAAGCGGGCAGGAGATGGCAGAAGTTAAGGACTAG...TTGGCTTCTGACAGTCCTTCCACCTTCTGAAACTAGCTGCCTTTTAAAGCAGAT
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000142271.2
CDS-3UTR CCA 90 bp ATCTGCTTTAAAAGGCAGCTAGTTTCAGAAGGTGGAAGGACTGTCAGAAGCCAACAATATTCCTTCCATTaGCAGCTTTTTAAAGGTCCT +
Preference number: 4 (lower is better)
Translates to: ICFKRQLVSEGGRTVRSQQYSFH*QLFKGP
Trigger: AGGACCTTTAAAAAGCTGCCAATGGAAGGAATATTG...TTGGCTTCTGACAGTCCTTCCACCTTCTGAAACTAGCTGCCTTTTAAAGCAGAT
41% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000142271.2
CDS-3UTR CAA 90 bp AACAGGACCTCCCTCACTAGAGAAAAATCCAGCCCTCAACAGCATCTCGAATCTGAGAAGAGTCTGTTCTaGCCAAGATGTATTTCAATA +
Preference number: 5 (lower is better)
Translates to: NRTSLTREKSSPQQHLESEKSLF*PRCISI
Trigger: TATTGAAATACATCTTGGCAAGAACAGACTCTTCTC...AGATTCGAGATGCTGTTGAGGGCTGGATTTTTCTCTAGTGAGGGAGGTCCTGTT
43% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000142271.2
CDS CAA 72 bp AAGGGGGCACAGAGAGGAGGATGTGAGCGGGCTGTCTaGTCTTCCCTTCCCTGTAAGTCATTTCCCTCAAGA +
Preference number: 6 (lower is better)
Translates to: KGAQRGGCERAV*SSLPCKSFPSR
Trigger: TCTTGAGGGAAATGACTTACAGGGAAGGGAAGACAAGACAGCCCGCTCACATCCTCCTCTCTGTGCCCCCTT
54% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000142271.2
CDS CAA 90 bp CATAGAAGTAAGGGGGCACAGAGAGGAGGATGTGAGCGGGCTGTCTaGTCTTCCCTTCCCTGTAAGTCATTTCCCTCAAGATCGGGATCC +
Preference number: 6 (lower is better)
Translates to: HRSKGAQRGGCERAV*SSLPCKSFPSRSGS
Trigger: GGATCCCGATCTTGAGGGAAATGACTTACAGGGAAGGGAAGACAAGACAGCCCGCTCACATCCTCCTCTCTGTGCCCCCTTACTTCTATG
53% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000142271.2
CDS GCA 72 bp ATTGGCAGCTTTTTAAAGGTCCTAGTCCTTAACTTCTaGCATCTCCTGCCCGCTTCTCTACTCAAGAAGTCA +
Preference number: 6 (lower is better)
Translates to: IGSFLKVLVLNF*HLLPASLLKKS
Trigger: TGACTTCTTGAGTAGAGAAGCGGGCAGGAGATGGCAGAAGTTAAGGACTAGGACCTTTAAAAAGCTGCCAAT
46% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000142271.2
CDS CAA 72 bp TTCCATCTTCAAGCATCCCACAACAGCTACTGCGATTaGGTCCATGAGAAGAGTCTGTTCTTGCCAAGATGT +
Preference number: 6 (lower is better)
Translates to: FHLQASHNSYCD*VHEKSLFLPRC
Trigger: ACATCTTGGCAAGAACAGACTCTTCTCATGGACCAAATCGCAGTAGCTGTTGTGGGATGCTTGAAGATGGAA
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000142271.2
CDS TCA 72 bp TCAAGCATCCCACAACAGCTACTGCGATTTGGTCCATaGGAAGAGTCTGTTCTTGCCAAGATGTATTTCAAT +
Preference number: 6 (lower is better)
Translates to: SSIPQQLLRFGP*EESVLAKMYFN
Trigger: ATTGAAATACATCTTGGCAAGAACAGACTCTTCTCATGGACCAAATCGCAGTAGCTGTTGTGGGATGCTTGA
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000142271.2
CDS CAA 72 bp AGCTACTGCGATTTGGTCCATGAGAAGAGTCTGTTCTaGCCAAGATGTATTTCAATATTCCTTCCATTGGCA +
Preference number: 6 (lower is better)
Translates to: SYCDLVHEKSLF*PRCISIFLPLA
Trigger: TGCCAATGGAAGGAATATTGAAATACATCTTGGCAAGAACAGACTCTTCTCATGGACCAAATCGCAGTAGCT
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000142271.2