RADAR | Search for sensor designs | Human genes | Mouse genes | Code

Pregenerated sensors for FIBCD1 (Mus musculus)

Ensembl gene IDs: ENSMUSG00000026841

Ensembl transcript IDs: ENSMUST00000028188.8

Found 254 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).

Type Sensor Details
3UTR CCA 90 bp GGGTGCACACAGCCCCAAGTAGCAACTAGGCCCACTGTTTGCCCATaGGGTGCTGCACTGACCCTCAGAGCTGCTTCCAGCCCCAGGGCC +
Preference number: 1 (lower is better)
Translates to: GCTQPQVATRPTVCP*GAALTLRAASSPRA
Trigger: GGCCCTGGGGCTGGAAGCAGCTCTGAGGGTCAGTGCAGCACCCCATGGGCAAACAGTGGGCCTAGTTGCTACTTGGGGCTGTGTGCACCC
64% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000028188.8
3UTR GCA 90 bp TCACCAGCCCAGGTTTGCAGGGGACCCAAGGCACTGTCTGCTCCCTaGATGCTGTCTAGGTGGCCACTGGCACGACCCAGGTGTACCCAG +
Preference number: 1 (lower is better)
Translates to: SPAQVCRGPKALSAP*MLSRWPLARPRCTQ
Trigger: CTGGGTACACCTGGGTCGTGCCAGTGGCCACCTAGACAGCATGCAGGGAGCAGACAGTGCCTTGGGTCCCCTGCAAACCTGGGCTGGTGA
63% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000028188.8
3UTR GCA 90 bp GACACCGGGTGCACACAGCCCCAAGTAGCAACTAGGCCCACTGTTTaGCCATGGGGTGCTGCACTGACCCTCAGAGCTGCTTCCAGCCCC +
Preference number: 1 (lower is better)
Translates to: DTGCTQPQVATRPTV*PWGAALTLRAASSP
Trigger: GGGGCTGGAAGCAGCTCTGAGGGTCAGTGCAGCACCCCATGGGCAAACAGTGGGCCTAGTTGCTACTTGGGGCTGTGTGCACCCGGTGTC
63% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000028188.8
3UTR TCA 90 bp CCCGCCTGCCCTTGGAGGGTGCACACCAGGAAGGTGAAGGACTGTTaGCCTGGTCTCTCCCTACTAACTCCTGCCCACTCGGCCAGCGTT +
Preference number: 1 (lower is better)
Translates to: PACPWRVHTRKVKDC*PGLSLLTPAHSASV
Trigger: AACGCTGGCCGAGTGGGCAGGAGTTAGTAGGGAGAGACCAGGTCAACAGTCCTTCACCTTCCTGGTGTGCACCCTCCAAGGGCAGGCGGG
62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000028188.8
3UTR GCA 90 bp CTCAGAGCTGCTTCCAGCCCCAGGGCCCCATTGTATCTGACAGCATaGACACCTGCTCTGCTTGGCACAGCTAGCCTCAGGTCGGACCCC +
Preference number: 1 (lower is better)
Translates to: LRAASSPRAPLYLTA*TPALLGTASLRSDP
Trigger: GGGGTCCGACCTGAGGCTAGCTGTGCCAAGCAGAGCAGGTGTGCATGCTGTCAGATACAATGGGGCCCTGGGGCTGGAAGCAGCTCTGAG
62% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000028188.8
3UTR TCA 90 bp CAATGTGACCAGACAGGGATGCATGTCACCCTTCACCAGCTGCCCTaGTGGGCTGAGCTTCAGCTCCTGCATTCTGCAGCCCAGCCCTGG +
Preference number: 1 (lower is better)
Translates to: QCDQTGMHVTLHQLP*WAELQLLHSAAQPW
Trigger: CCAGGGCTGGGCTGCAGAATGCAGGAGCTGAAGCTCAGCCCATCAGGGCAGCTGGTGAAGGGTGACATGCATCCCTGTCTGGTCACATTG
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000028188.8
3UTR TCA 90 bp GCCACCAGAACCTCGGGCAACCTGCGCCAAAGGCAGATGAAGGAATaGGGCTTTGAGAGGCCCCCGGGCACTTTGGGTCCATGTTGCTTC +
Preference number: 1 (lower is better)
Translates to: ATRTSGNLRQRQMKE*GFERPPGTLGPCCF
Trigger: GAAGCAACATGGACCCAAAGTGCCCGGGGGCCTCTCAAAGCCTCATTCCTTCATCTGCCTTTGGCGCAGGTTGCCCGAGGTTCTGGTGGC
60% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000028188.8
3UTR GCA 90 bp CTTGCCCCACAGGCAGATGATGTGGGGCAGGACCCATGGGTGCTCTaGAGGAGGGCAGGTGGACCTTGTTTGAGGTGGGAAAGAGCAGAT +
Preference number: 1 (lower is better)
Translates to: LAPQADDVGQDPWVL*RRAGGPCLRWERAD
Trigger: ATCTGCTCTTTCCCACCTCAAACAAGGTCCACCTGCCCTCCTGCAGAGCACCCATGGGTCCTGCCCCACATCATCTGCCTGTGGGGCAAG
60% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000028188.8
3UTR CCA 90 bp ACCAGGATGCAGCAGACAAAGCACAGGGACCAAAGCCTGGGCAGGTaGGATTTGGGGTTGCCAGGTGCCAGCTCCGCTGGTAGGAACCAA +
Preference number: 1 (lower is better)
Translates to: TRMQQTKHRDQSLGR*DLGLPGASSAGRNQ
Trigger: TTGGTTCCTACCAGCGGAGCTGGCACCTGGCAACCCCAAATCCCACCTGCCCAGGCTTTGGTCCCTGTGCTTTGTCTGCTGCATCCTGGT
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000028188.8
3UTR CCA 90 bp AAGTGCTGGTTGTGGGCCAAGTCCTGCAGTGACCATGGCCACAGATaGCTCGTTCTCCACCTGGAGGCTTGGGGTGACACAGATGAGGGG +
Preference number: 1 (lower is better)
Translates to: KCWLWAKSCSDHGHR*LVLHLEAWGDTDEG
Trigger: CCCCTCATCTGTGTCACCCCAAGCCTCCAGGTGGAGAACGAGCCATCTGTGGCCATGGTCACTGCAGGACTTGGCCCACAACCAGCACTT
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000028188.8
3UTR TCA 90 bp CCTGGCTTGGGAGAGAGCTTGGTGTCCCTGGGGCAGTGGCTGGGCTaGAGGGCTGTCATTTCCAATGTGACCAGACAGGGATGCATGTCA +
Preference number: 1 (lower is better)
Translates to: PGLGESLVSLGQWLG*RAVISNVTRQGCMS
Trigger: TGACATGCATCCCTGTCTGGTCACATTGGAAATGACAGCCCTTCAGCCCAGCCACTGCCCCAGGGACACCAAGCTCTCTCCCAAGCCAGG
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000028188.8
3UTR CCA 90 bp TGCAGCAGACAAAGCACAGGGACCAAAGCCTGGGCAGGTGGGATTTaGGGTTGCCAGGTGCCAGCTCCGCTGGTAGGAACCAAAGAGCAT +
Preference number: 1 (lower is better)
Translates to: CSRQSTGTKAWAGGI*GCQVPAPLVGTKEH
Trigger: ATGCTCTTTGGTTCCTACCAGCGGAGCTGGCACCTGGCAACCCCAAATCCCACCTGCCCAGGCTTTGGTCCCTGTGCTTTGTCTGCTGCA
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000028188.8
3UTR CCA 90 bp CTGCCCTTGGAGGGTGCACACCAGGAAGGTGAAGGACTGTTGACCTaGTCTCTCCCTACTAACTCCTGCCCACTCGGCCAGCGTTTGACA +
Preference number: 1 (lower is better)
Translates to: LPLEGAHQEGEGLLT*SLPTNSCPLGQRLT
Trigger: TGTCAAACGCTGGCCGAGTGGGCAGGAGTTAGTAGGGAGAGACCAGGTCAACAGTCCTTCACCTTCCTGGTGTGCACCCTCCAAGGGCAG
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000028188.8
3UTR TCA 90 bp GTTGGGGAAGGAGTGTCACTGGCTCAGGAAGCTGAGTTTCAGGGCTaGCCCTGGGCCATCCCTACTAAAGAGCAGACCAGCCATGCACAG +
Preference number: 1 (lower is better)
Translates to: VGEGVSLAQEAEFQG*PWAIPTKEQTSHAQ
Trigger: CTGTGCATGGCTGGTCTGCTCTTTAGTAGGGATGGCCCAGGGTCAGCCCTGAAACTCAGCTTCCTGAGCCAGTGACACTCCTTCCCCAAC
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000028188.8
3UTR GCA 90 bp AGACAAAGCACAGGGACCAAAGCCTGGGCAGGTGGGATTTGGGGTTaGCAGGTGCCAGCTCCGCTGGTAGGAACCAAAGAGCATGTCACT +
Preference number: 1 (lower is better)
Translates to: RQSTGTKAWAGGIWG*QVPAPLVGTKEHVT
Trigger: AGTGACATGCTCTTTGGTTCCTACCAGCGGAGCTGGCACCTGGCAACCCCAAATCCCACCTGCCCAGGCTTTGGTCCCTGTGCTTTGTCT
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000028188.8
3UTR CCA 90 bp CTCTCTGCAGAGATGGTAGTCTTGGGCCATGCTGAGTCCCAGGGCTaGCTGGCTTCTGAGAAGATCCTAGAGTCAGTCCATGGAGGTCGG +
Preference number: 1 (lower is better)
Translates to: LSAEMVVLGHAESQG*LASEKILESVHGGR
Trigger: CCGACCTCCATGGACTGACTCTAGGATCTTCTCAGAAGCCAGCCAGCCCTGGGACTCAGCATGGCCCAAGACTACCATCTCTGCAGAGAG
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000028188.8
3UTR TCA 90 bp GTCACTGATCACAGGTGGCAGCCACCTACACAGACATCAGACCAGTaGATGAAAGCCAGGGCTGGAGGCTGTGGCCCAGTGTGCAGGAAT +
Preference number: 1 (lower is better)
Translates to: VTDHRWQPPTQTSDQ*MKARAGGCGPVCRN
Trigger: ATTCCTGCACACTGGGCCACAGCCTCCAGCCCTGGCTTTCATTCACTGGTCTGATGTCTGTGTAGGTGGCTGCCACCTGTGATCAGTGAC
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000028188.8
3UTR TCA 90 bp AACCTCGGGCAACCTGCGCCAAAGGCAGATGAAGGAATGAGGCTTTaGGAGGCCCCCGGGCACTTTGGGTCCATGTTGCTTCATCACACT +
Preference number: 1 (lower is better)
Translates to: NLGQPAPKADEGMRL*EAPGHFGSMLLHHT
Trigger: AGTGTGATGAAGCAACATGGACCCAAAGTGCCCGGGGGCCTCTCAAAGCCTCATTCCTTCATCTGCCTTTGGCGCAGGTTGCCCGAGGTT
57% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000028188.8
3UTR GCA 90 bp ATTTCCAATGTGACCAGACAGGGATGCATGTCACCCTTCACCAGCTaGCCTGATGGGCTGAGCTTCAGCTCCTGCATTCTGCAGCCCAGC +
Preference number: 1 (lower is better)
Translates to: ISNVTRQGCMSPFTS*PDGLSFSSCILQPS
Trigger: GCTGGGCTGCAGAATGCAGGAGCTGAAGCTCAGCCCATCAGGGCAGCTGGTGAAGGGTGACATGCATCCCTGTCTGGTCACATTGGAAAT
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000028188.8
3UTR TCA 90 bp GGCAGGACCCATGGGTGCTCTGCAGGAGGGCAGGTGGACCTTGTTTaGGGTGGGAAAGAGCAGATGAGCTCTGAAAGCAACCAGAAGAAT +
Preference number: 1 (lower is better)
Translates to: GRTHGCSAGGQVDLV*GGKEQMSSESNQKN
Trigger: ATTCTTCTGGTTGCTTTCAGAGCTCATCTGCTCTTTCCCACCTCAAACAAGGTCCACCTGCCCTCCTGCAGAGCACCCATGGGTCCTGCC
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000028188.8
3UTR CCA 90 bp CGGTGGCTTCAGGCTTTGGTACAAGTCTGGCAGAAAGGAAAGGCATaGGCCTCTGCCTCCAGACAGAGGAGGTCACCATTGCCATCTTAC +
Preference number: 1 (lower is better)
Translates to: RWLQALVQVWQKGKA*ASASRQRRSPLPSY
Trigger: GTAAGATGGCAATGGTGACCTCCTCTGTCTGGAGGCAGAGGCCCATGCCTTTCCTTTCTGCCAGACTTGTACCAAAGCCTGAAGCCACCG
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000028188.8
3UTR TCA 90 bp GTGCTACAGATCCTTGCTGAAGACCCGAGGCCCAATGTGAGGGACTaGGCAGGTCACACAGTTCATCGGTGGCTTCAGGCTTTGGTACAA +
Preference number: 1 (lower is better)
Translates to: VLQILAEDPRPNVRD*AGHTVHRWLQALVQ
Trigger: TTGTACCAAAGCCTGAAGCCACCGATGAACTGTGTGACCTGCTCAGTCCCTCACATTGGGCCTCGGGTCTTCAGCAAGGATCTGTAGCAC
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000028188.8
3UTR GCA 90 bp GTTTTTGCCAAGCCAGGAAGAATGGGAGATGCTGCCTTACCAGGATaGAGCAGACAAAGCACAGGGACCAAAGCCTGGGCAGGTGGGATT +
Preference number: 1 (lower is better)
Translates to: VFAKPGRMGDAALPG*SRQSTGTKAWAGGI
Trigger: AATCCCACCTGCCCAGGCTTTGGTCCCTGTGCTTTGTCTGCTGCATCCTGGTAAGGCAGCATCTCCCATTCTTCCTGGCTTGGCAAAAAC
54% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000028188.8
3UTR GCA 90 bp GCAACAGAAGCCACTTTAGCACCAGCCTCGGGGGTGGGTAGTGTCTaGCAGGATGTGTTTAAGCTCCCACACACCTCTGCAATGAAGCTA +
Preference number: 1 (lower is better)
Translates to: ATEATLAPASGVGSV*QDVFKLPHTSAMKL
Trigger: TAGCTTCATTGCAGAGGTGTGTGGGAGCTTAAACACATCCTGGCAGACACTACCCACCCCCGAGGCTGGTGCTAAAGTGGCTTCTGTTGC
54% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000028188.8
3UTR GCA 90 bp TGCTTCATCACACTTCTGGGTTCCATGAGACTTCTGCTGGCATGTTaGTCCTTAGATCACAGGGCTCAGGGCAGCTGTGGGCCTAGCTCA +
Preference number: 1 (lower is better)
Translates to: CFITLLGSMRLLLAC*SLDHRAQGSCGPSS
Trigger: TGAGCTAGGCCCACAGCTGCCCTGAGCCCTGTGATCTAAGGAGCAACATGCCAGCAGAAGTCTCATGGAACCCAGAAGTGTGATGAAGCA
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000028188.8
3UTR CCA 90 bp GCTGCCTGCCCCCAATTCTGGATGTTTTTGCCAAGCCAGGAAGAATaGGAGATGCTGCCTTACCAGGATGCAGCAGACAAAGCACAGGGA +
Preference number: 1 (lower is better)
Translates to: AACPQFWMFLPSQEE*EMLPYQDAADKAQG
Trigger: TCCCTGTGCTTTGTCTGCTGCATCCTGGTAAGGCAGCATCTCCCATTCTTCCTGGCTTGGCAAAAACATCCAGAATTGGGGGCAGGCAGC
54% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 1 transcripts:
ENSMUST00000028188.8
3UTR TCA 90 bp CGACGGAGTTTGTTTGATACCACATCAGAAAGCGCTTGGCACTTCTaGGCAGCGCTTACAGCGGCAGCTGGCAACAGAAGCCACTTTAGC +
Preference number: 1 (lower is better)
Translates to: RRSLFDTTSESAWHF*AALTAAAGNRSHFS
Trigger: GCTAAAGTGGCTTCTGTTGCCAGCTGCCGCTGTAAGCGCTGCTCAGAAGTGCCAAGCGCTTTCTGATGTGGTATCAAACAAACTCCGTCG
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000028188.8
3UTR GCA 90 bp GCCCCCAATTCTGGATGTTTTTGCCAAGCCAGGAAGAATGGGAGATaGTGCCTTACCAGGATGCAGCAGACAAAGCACAGGGACCAAAGC +
Preference number: 1 (lower is better)
Translates to: APNSGCFCQARKNGR*CLTRMQQTKHRDQS
Trigger: GCTTTGGTCCCTGTGCTTTGTCTGCTGCATCCTGGTAAGGCAGCATCTCCCATTCTTCCTGGCTTGGCAAAAACATCCAGAATTGGGGGC
53% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 1 transcripts:
ENSMUST00000028188.8
3UTR CCA 90 bp CTCTGCAATGAAGCTAGGTGCCAGGTGTCAGGGACAGAGAGGGAATaGGAGGGGACTTTCCTATGTATCCCTTGTCCCATCAGAACCTTG +
Preference number: 1 (lower is better)
Translates to: LCNEARCQVSGTERE*EGTFLCIPCPIRTL
Trigger: CAAGGTTCTGATGGGACAAGGGATACATAGGAAAGTCCCCTCCCATTCCCTCTCTGTCCCTGACACCTGGCACCTAGCTTCATTGCAGAG
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000028188.8
3UTR GCA 90 bp ACTAAAGAGCAGACCAGCCATGCACAGGTGGGCAGAGCATGTTCTTaGAGCAGTGGGCATGGGATGAGATGTGTAGGGACTAGACATAAC +
Preference number: 1 (lower is better)
Translates to: TKEQTSHAQVGRACS*SSGHGMRCVGTRHN
Trigger: GTTATGTCTAGTCCCTACACATCTCATCCCATGCCCACTGCTGCAAGAACATGCTCTGCCCACCTGTGCATGGCTGGTCTGCTCTTTAGT
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000028188.8
3UTR CCA 90 bp AATGGGAGGGGACTTTCCTATGTATCCCTTGTCCCATCAGAACCTTaGCTACTCTACTCATGTTTCGTGCCACCAGCGCGGGACCATAAC +
Preference number: 1 (lower is better)
Translates to: NGRGLSYVSLVPSEP*LLYSCFVPPARDHN
Trigger: GTTATGGTCCCGCGCTGGTGGCACGAAACATGAGTAGAGTAGCCAAGGTTCTGATGGGACAAGGGATACATAGGAAAGTCCCCTCCCATT
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000028188.8
3UTR TCA 90 bp ACACTTGCATGTGTGAATCTGTTGCTTCACTCGACGGAGTTTGTTTaGTACCACATCAGAAAGCGCTTGGCACTTCTGAGCAGCGCTTAC +
Preference number: 1 (lower is better)
Translates to: TLACVNLLLHSTEFV*YHIRKRLALLSSAY
Trigger: GTAAGCGCTGCTCAGAAGTGCCAAGCGCTTTCTGATGTGGTATCAAACAAACTCCGTCGAGTGAAGCAACAGATTCACACATGCAAGTGT
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000028188.8
3UTR TCA 90 bp TGTGGAGACTCTTCCCAAGAAGATAAGCAGTGTGGCTCTGCCAGGTaGCTTCATAGACTCACCCTGGTTAGTCATTCCATTGACAAACCA +
Preference number: 1 (lower is better)
Translates to: CGDSSQEDKQCGSAR*LHRLTLVSHSIDKP
Trigger: TGGTTTGTCAATGGAATGACTAACCAGGGTGAGTCTATGAAGTCACCTGGCAGAGCCACACTGCTTATCTTCTTGGGAAGAGTCTCCACA
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000028188.8
3UTR CCA 90 bp AAGATAAGCAGTGTGGCTCTGCCAGGTGACTTCATAGACTCACCCTaGTTAGTCATTCCATTGACAAACCAAAGTAGGTCTGGGGTATCA +
Preference number: 1 (lower is better)
Translates to: KISSVALPGDFIDSP*LVIPLTNQSRSGVS
Trigger: TGATACCCCAGACCTACTTTGGTTTGTCAATGGAATGACTAACCAGGGTGAGTCTATGAAGTCACCTGGCAGAGCCACACTGCTTATCTT
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000028188.8
3UTR-3UTR TCA 90 bp GCAGCGCTTACAGCGGCAGCTGGCAACAGAAGCCACTTTAGCACCAGCCTCGGGAGGGTCTCCAGGCCCTaGGGGATTGGGGTTAGGGCA +
Preference number: 2 (lower is better)
Translates to: AALTAAAGNRSHFSTSLGRVSRP*GIGVRA
Trigger: TGCCCTAACCCCAATCCCTCAGGGCCTGGAGACCCT...CCCGAGGCTGGTGCTAAAGTGGCTTCTGTTGCCAGCTGCCGCTGTAAGCGCTGC
63% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000028188.8
3UTR-3UTR TCA 90 bp CACCAGCCCAGGTTTGCAGGGGACCCAAGGCACTGTCTGCTCCCTGCATGCTGTTGCCCCACAGGCAGATaGTGTGGGGCAGGACCCATG +
Preference number: 2 (lower is better)
Translates to: HQPRFAGDPRHCLLPACCCPTGR*CGAGPM
Trigger: CATGGGTCCTGCCCCACATCATCTGCCTGTGGGGCA...ACAGCATGCAGGGAGCAGACAGTGCCTTGGGTCCCCTGCAAACCTGGGCTGGTG
63% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 1 transcripts:
ENSMUST00000028188.8
3UTR-3UTR CCA 90 bp CACCAGCCCAGGTTTGCAGGGGACCCAAGGCACTGTCTGCTCCCTGCATGCTGTGCTTGGGAGAGAGCTTaGTGTCCCTGGGGCAGTGGC +
Preference number: 2 (lower is better)
Translates to: HQPRFAGDPRHCLLPACCAWERA*CPWGSG
Trigger: GCCACTGCCCCAGGGACACCAAGCTCTCTCCCAAGC...ACAGCATGCAGGGAGCAGACAGTGCCTTGGGTCCCCTGCAAACCTGGGCTGGTG
63% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000028188.8
3UTR CAA 90 bp TCCCGCCTGCCCTTGGAGGGTGCACACCAGGAAGGTGAAGGACTGTaGACCTGGTCTCTCCCTACTAACTCCTGCCCACTCGGCCAGCGT +
Preference number: 2 (lower is better)
Translates to: SRLPLEGAHQEGEGL*TWSLPTNSCPLGQR
Trigger: ACGCTGGCCGAGTGGGCAGGAGTTAGTAGGGAGAGACCAGGTCAACAGTCCTTCACCTTCCTGGTGTGCACCCTCCAAGGGCAGGCGGGA
62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000028188.8
3UTR-3UTR CCA 90 bp GCAGCGCTTACAGCGGCAGCTGGCAACAGAAGCCACTTTAGCACCAGCCTCGGGAAACCCCCAGGTCTGTaGAGACCCAGGGAAGGGTGG +
Preference number: 2 (lower is better)
Translates to: AALTAAAGNRSHFSTSLGKPPGL*RPREGW
Trigger: CCACCCTTCCCTGGGTCTCCACAGACCTGGGGGTTT...CCCGAGGCTGGTGCTAAAGTGGCTTCTGTTGCCAGCTGCCGCTGTAAGCGCTGC
62% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000028188.8
3UTR-3UTR CCA 90 bp GGACCCAAGGCACTGTCTGCTCCCTGCATGCTGTCTAGGTGGCCACTGGCACGACACAGGCAGATGATGTaGGGCAGGACCCATGGGTGC +
Preference number: 2 (lower is better)
Translates to: GPKALSAPCMLSRWPLARHRQMM*GRTHGC
Trigger: GCACCCATGGGTCCTGCCCCACATCATCTGCCTGTG...TCGTGCCAGTGGCCACCTAGACAGCATGCAGGGAGCAGACAGTGCCTTGGGTCC
62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000028188.8
3UTR CAA 90 bp GGTGCTGCACTGACCCTCAGAGCTGCTTCCAGCCCCAGGGCCCCATaGTATCTGACAGCATGCACACCTGCTCTGCTTGGCACAGCTAGC +
Preference number: 2 (lower is better)
Translates to: GAALTLRAASSPRAP*YLTACTPALLGTAS
Trigger: GCTAGCTGTGCCAAGCAGAGCAGGTGTGCATGCTGTCAGATACAATGGGGCCCTGGGGCTGGAAGCAGCTCTGAGGGTCAGTGCAGCACC
61% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000028188.8
3UTR-3UTR TCA 90 bp GGACCCAAGGCACTGTCTGCTCCCTGCATGCTGTCTAGGTGGCCACTGGCACGAGCCAAGACCCTCGTGTaGGATGTGGAGACTCTTCCC +
Preference number: 2 (lower is better)
Translates to: GPKALSAPCMLSRWPLARAKTLV*DVETLP
Trigger: GGGAAGAGTCTCCACATCTCACACGAGGGTCTTGGC...TCGTGCCAGTGGCCACCTAGACAGCATGCAGGGAGCAGACAGTGCCTTGGGTCC
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000028188.8
3UTR-3UTR GCA 90 bp CTTGGCACAGCTAGCCTCAGGTCGGACCCCCACTCACAGCCACTGAGCCTGAATGGCTGTGGCCCAGTGTaGAGGAATAGTGCTCCCAGG +
Preference number: 2 (lower is better)
Translates to: LGTASLRSDPHSQPLSLNGCGPV*RNSAPR
Trigger: CCTGGGAGCACTATTCCTGCACACTGGGCCACAGCC...ATTCAGGCTCAGTGGCTGTGAGTGGGGGTCCGACCTGAGGCTAGCTGTGCCAAG
61% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000028188.8
3UTR-3UTR CCA 90 bp CTTGGCACAGCTAGCCTCAGGTCGGACCCCCACTCACAGCCACTGAGCCTGAATTGGGCAGGTGGGATTTaGGGTTGCCAGGTGCCAGCT +
Preference number: 2 (lower is better)
Translates to: LGTASLRSDPHSQPLSLNWAGGI*GCQVPA
Trigger: AGCTGGCACCTGGCAACCCCAAATCCCACCTGCCCA...ATTCAGGCTCAGTGGCTGTGAGTGGGGGTCCGACCTGAGGCTAGCTGTGCCAAG
61% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000028188.8
3UTR CAA 90 bp GGCGGGGCTGCAGCCTGCCTTCCTGCGGGATCACCCGTGCAGGTGTaGAGAAGGCTGGACAAGGAAATGTCCAGATGTCCAACCTGTTTG +
Preference number: 2 (lower is better)
Translates to: GGAAACLPAGSPVQV*RRLDKEMSRCPTCL
Trigger: CAAACAGGTTGGACATCTGGACATTTCCTTGTCCAGCCTTCTCAACACCTGCACGGGTGATCCCGCAGGAAGGCAGGCTGCAGCCCCGCC
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000028188.8
3UTR-3UTR TCA 90 bp GCAGCGCTTACAGCGGCAGCTGGCAACAGAAGCCACTTTAGCACCAGCCTCGGGCCTTCCACTTTGATCTaGTGGAGGGGACCAAGGTGC +
Preference number: 2 (lower is better)
Translates to: AALTAAAGNRSHFSTSLGPSTLI*WRGPRC
Trigger: GCACCTTGGTCCCCTCCATCAGATCAAAGTGGAAGG...CCCGAGGCTGGTGCTAAAGTGGCTTCTGTTGCCAGCTGCCGCTGTAAGCGCTGC
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000028188.8
3UTR-3UTR TCA 90 bp GCTGGTTGTGGGCCAAGTCCTGCAGTGACCATGGCCACAGATGGCTCGTTCTCCGATGTCCAACCTGTTTaGGGGCTCTGTCTCCTGCCC +
Preference number: 2 (lower is better)
Translates to: AGCGPSPAVTMATDGSFSDVQPV*GLCLLP
Trigger: GGGCAGGAGACAGAGCCCTCAAACAGGTTGGACATC...GGAGAACGAGCCATCTGTGGCCATGGTCACTGCAGGACTTGGCCCACAACCAGC
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000028188.8
3UTR-3UTR TCA 90 bp GGACCCAAGGCACTGTCTGCTCCCTGCATGCTGTCTAGGTGGCCACTGGCACGATGTGGCTCTGCCAGGTaGCTTCATAGACTCACCCTG +
Preference number: 2 (lower is better)
Translates to: GPKALSAPCMLSRWPLARCGSAR*LHRLTL
Trigger: CAGGGTGAGTCTATGAAGTCACCTGGCAGAGCCACA...TCGTGCCAGTGGCCACCTAGACAGCATGCAGGGAGCAGACAGTGCCTTGGGTCC
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000028188.8
3UTR-3UTR GCA 90 bp GGACCCAAGGCACTGTCTGCTCCCTGCATGCTGTCTAGGTGGCCACTGGCACGAAGGGGGCAGTCTCTCTaGAGAGATGGTAGTCTTGGG +
Preference number: 2 (lower is better)
Translates to: GPKALSAPCMLSRWPLARRGQSL*RDGSLG
Trigger: CCCAAGACTACCATCTCTGCAGAGAGACTGCCCCCT...TCGTGCCAGTGGCCACCTAGACAGCATGCAGGGAGCAGACAGTGCCTTGGGTCC
60% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000028188.8
3UTR-3UTR GCA 90 bp GCTGGTTGTGGGCCAAGTCCTGCAGTGACCATGGCCACAGATGGCTCGTTCTCCGCACTGTCTGCTCCCTaGATGCTGTCTAGGTGGCCA +
Preference number: 2 (lower is better)
Translates to: AGCGPSPAVTMATDGSFSALSAP*MLSRWP
Trigger: TGGCCACCTAGACAGCATGCAGGGAGCAGACAGTGC...GGAGAACGAGCCATCTGTGGCCATGGTCACTGCAGGACTTGGCCCACAACCAGC
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000028188.8
3UTR-3UTR CCA 90 bp GGACCCAAGGCACTGTCTGCTCCCTGCATGCTGTCTAGGTGGCCACTGGCACGACCAGCCATGCACAGGTaGGCAGAGCATGTTCTTGCA +
Preference number: 2 (lower is better)
Translates to: GPKALSAPCMLSRWPLARPAMHR*AEHVLA
Trigger: TGCAAGAACATGCTCTGCCCACCTGTGCATGGCTGG...TCGTGCCAGTGGCCACCTAGACAGCATGCAGGGAGCAGACAGTGCCTTGGGTCC
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000028188.8
3UTR-3UTR CCA 90 bp CAGGGCTGGCTGGCTTCTGAGAAGATCCTAGAGTCAGTCCATGGAGGTCGGCAGGGTGGCCTAGGGGTCTaGTCTTGGCCTTGGGGCTTT +
Preference number: 2 (lower is better)
Translates to: QGWLASEKILESVHGGRQGGLGV*SWPWGF
Trigger: AAAGCCCCAAGGCCAAGACCAGACCCCTAGGCCACC...CTGCCGACCTCCATGGACTGACTCTAGGATCTTCTCAGAAGCCAGCCAGCCCTG
60% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000028188.8
3UTR CAA 90 bp ATGCAGCAGACAAAGCACAGGGACCAAAGCCTGGGCAGGTGGGATTaGGGGTTGCCAGGTGCCAGCTCCGCTGGTAGGAACCAAAGAGCA +
Preference number: 2 (lower is better)
Translates to: MQQTKHRDQSLGRWD*GLPGASSAGRNQRA
Trigger: TGCTCTTTGGTTCCTACCAGCGGAGCTGGCACCTGGCAACCCCAAATCCCACCTGCCCAGGCTTTGGTCCCTGTGCTTTGTCTGCTGCAT
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000028188.8
3UTR CAA 90 bp TGGTCTTGGCCTTGGGGCTTTGTAGACAGCTGTGCCACGGCCCAGTaGGCCACAAATGAGAGAGAGCTGTGGCAGCTGCACAAGGTCCTC +
Preference number: 2 (lower is better)
Translates to: WSWPWGFVDSCATAQ*ATNERELWQLHKVL
Trigger: GAGGACCTTGTGCAGCTGCCACAGCTCTCTCTCATTTGTGGCCAACTGGGCCGTGGCACAGCTGTCTACAAAGCCCCAAGGCCAAGACCA
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000028188.8
3UTR CAA 90 bp CCACTGAGCCTGAATCCTGGCCTCTGGATTTATGGATCCCTGCAGTaGCTGGGCCACCAGAACCTCGGGCAACCTGCGCCAAAGGCAGAT +
Preference number: 2 (lower is better)
Translates to: PLSLNPGLWIYGSLQ*LGHQNLGQPAPKAD
Trigger: ATCTGCCTTTGGCGCAGGTTGCCCGAGGTTCTGGTGGCCCAGCAACTGCAGGGATCCATAAATCCAGAGGCCAGGATTCAGGCTCAGTGG
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000028188.8
3UTR-3UTR TCA 90 bp CACCAGCCCAGGTTTGCAGGGGACCCAAGGCACTGTCTGCTCCCTGCATGCTGTCAGGTGGACCTTGTTTaGGGTGGGAAAGAGCAGATG +
Preference number: 2 (lower is better)
Translates to: HQPRFAGDPRHCLLPACCQVDLV*GGKEQM
Trigger: CATCTGCTCTTTCCCACCTCAAACAAGGTCCACCTG...ACAGCATGCAGGGAGCAGACAGTGCCTTGGGTCCCCTGCAAACCTGGGCTGGTG
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000028188.8
3UTR-3UTR GCA 90 bp GCTGGTTGTGGGCCAAGTCCTGCAGTGACCATGGCCACAGATGGCTCGTTCTCCGCTGCCTTACCAGGATaGAGCAGACAAAGCACAGGG +
Preference number: 2 (lower is better)
Translates to: AGCGPSPAVTMATDGSFSAALPG*SRQSTG
Trigger: CCCTGTGCTTTGTCTGCTGCATCCTGGTAAGGCAGC...GGAGAACGAGCCATCTGTGGCCATGGTCACTGCAGGACTTGGCCCACAACCAGC
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000028188.8
3UTR-3UTR GCA 90 bp TGGTTGTGGGCCAAGTCCTGCAGTGACCATGGCCACAGATGGCTCGTTCTCCACTCACCCTTCACCAGCTaGCCTGATGGGCTGAGCTTC +
Preference number: 2 (lower is better)
Translates to: WLWAKSCSDHGHRWLVLHSPFTS*PDGLSF
Trigger: GAAGCTCAGCCCATCAGGGCAGCTGGTGAAGGGTGA...GTGGAGAACGAGCCATCTGTGGCCATGGTCACTGCAGGACTTGGCCCACAACCA
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000028188.8
3UTR-3UTR CCA 90 bp CAGGGCTGGCTGGCTTCTGAGAAGATCCTAGAGTCAGTCCATGGAGGTCGGCAGACAGGGACCAAAGCCTaGGCAGGTGGGATTTGGGGT +
Preference number: 2 (lower is better)
Translates to: QGWLASEKILESVHGGRQTGTKA*AGGIWG
Trigger: ACCCCAAATCCCACCTGCCCAGGCTTTGGTCCCTGT...CTGCCGACCTCCATGGACTGACTCTAGGATCTTCTCAGAAGCCAGCCAGCCCTG
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000028188.8
3UTR-3UTR CCA 90 bp CACCAGCCCAGGTTTGCAGGGGACCCAAGGCACTGTCTGCTCCCTGCATGCTGTGCCTGCCCCCAATTCTaGATGTTTTTGCCAAGCCAG +
Preference number: 2 (lower is better)
Translates to: HQPRFAGDPRHCLLPACCACPQF*MFLPSQ
Trigger: CTGGCTTGGCAAAAACATCCAGAATTGGGGGCAGGC...ACAGCATGCAGGGAGCAGACAGTGCCTTGGGTCCCCTGCAAACCTGGGCTGGTG
59% GC, longest homopolymer 5 nt, total homopolymer stretches 14 nt.
Matches the following 1 transcripts:
ENSMUST00000028188.8
3UTR-3UTR CCA 90 bp GCAGCGCTTACAGCGGCAGCTGGCAACAGAAGCCACTTTAGCACCAGCCTCGGGGGGACAGAGAGGGAATaGGAGGGGACTTTCCTATGT +
Preference number: 2 (lower is better)
Translates to: AALTAAAGNRSHFSTSLGGTERE*EGTFLC
Trigger: ACATAGGAAAGTCCCCTCCCATTCCCTCTCTGTCCC...CCCGAGGCTGGTGCTAAAGTGGCTTCTGTTGCCAGCTGCCGCTGTAAGCGCTGC
59% GC, longest homopolymer 6 nt, total homopolymer stretches 10 nt.
Matches the following 1 transcripts:
ENSMUST00000028188.8
3UTR-3UTR TCA 90 bp TGGTTGTGGGCCAAGTCCTGCAGTGACCATGGCCACAGATGGCTCGTTCTCCACGCCAGGAGCTGGAGATaGCACTCCCACCTACAAACA +
Preference number: 2 (lower is better)
Translates to: WLWAKSCSDHGHRWLVLHARSWR*HSHLQT
Trigger: TGTTTGTAGGTGGGAGTGTCATCTCCAGCTCCTGGC...GTGGAGAACGAGCCATCTGTGGCCATGGTCACTGCAGGACTTGGCCCACAACCA
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000028188.8
3UTR-3UTR GCA 90 bp CACATCAGAAAGCGCTTGGCACTTCTGAGCAGCGCTTACAGCGGCAGCTGGCAAAGAGCAGACCAGCCATaGACAGGTGGGCAGAGCATG +
Preference number: 2 (lower is better)
Translates to: HIRKRLALLSSAYSGSWQRADQP*TGGQSM
Trigger: CATGCTCTGCCCACCTGTGCATGGCTGGTCTGCTCT...TTGCCAGCTGCCGCTGTAAGCGCTGCTCAGAAGTGCCAAGCGCTTTCTGATGTG
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000028188.8
3UTR-3UTR GCA 90 bp GGACCCAAGGCACTGTCTGCTCCCTGCATGCTGTCTAGGTGGCCACTGGCACGAAGGAAGAATGGGAGATaGTGCCTTACCAGGATGCAG +
Preference number: 2 (lower is better)
Translates to: GPKALSAPCMLSRWPLARRKNGR*CLTRMQ
Trigger: CTGCATCCTGGTAAGGCAGCATCTCCCATTCTTCCT...TCGTGCCAGTGGCCACCTAGACAGCATGCAGGGAGCAGACAGTGCCTTGGGTCC
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000028188.8
3UTR-3UTR GCA 90 bp ATGACACTCCCACCTACAAACACTAGTGTCCCACACGCACGAGCCACTAATGCCTGCAGCCTGCCTTCCTaGGGGATCACCCGTGCAGGT +
Preference number: 2 (lower is better)
Translates to: MTLPPTNTSVPHARATNACSLPS*GITRAG
Trigger: ACCTGCACGGGTGATCCCGCAGGAAGGCAGGCTGCA...GGCATTAGTGGCTCGTGCGTGTGGGACACTAGTGTTTGTAGGTGGGAGTGTCAT
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000028188.8
3UTR-3UTR GCA 90 bp GCAACAGAAGCCACTTTAGCACCAGCCTCGGGGGTGGGTAGTGTCTGCCAGGATGCTCCCACACACCTCTaGAATGAAGCTAGGTGCCAG +
Preference number: 2 (lower is better)
Translates to: ATEATLAPASGVGSVCQDAPTHL*NEARCQ
Trigger: CTGGCACCTAGCTTCATTGCAGAGGTGTGTGGGAGC...ATCCTGGCAGACACTACCCACCCCCGAGGCTGGTGCTAAAGTGGCTTCTGTTGC
58% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000028188.8
3UTR-3UTR CCA 90 bp CACATCAGAAAGCGCTTGGCACTTCTGAGCAGCGCTTACAGCGGCAGCTGGCAAGTGCCACGGCCCAGTTaGCCACAAATGAGAGAGAGC +
Preference number: 2 (lower is better)
Translates to: HIRKRLALLSSAYSGSWQVPRPS*PQMRES
Trigger: GCTCTCTCTCATTTGTGGCCAACTGGGCCGTGGCAC...TTGCCAGCTGCCGCTGTAAGCGCTGCTCAGAAGTGCCAAGCGCTTTCTGATGTG
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000028188.8
3UTR-3UTR CCA 90 bp GCAACAGAAGCCACTTTAGCACCAGCCTCGGGGGTGGGTAGTGTCTGCCAGGATCTAGGGGTCTGGTCTTaGCCTTGGGGCTTTGTAGAC +
Preference number: 2 (lower is better)
Translates to: ATEATLAPASGVGSVCQDLGVWS*PWGFVD
Trigger: GTCTACAAAGCCCCAAGGCCAAGACCAGACCCCTAG...ATCCTGGCAGACACTACCCACCCCCGAGGCTGGTGCTAAAGTGGCTTCTGTTGC
58% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 1 transcripts:
ENSMUST00000028188.8
3UTR-3UTR CCA 90 bp ATGACACTCCCACCTACAAACACTAGTGTCCCACACGCACGAGCCACTAATGCCCACCAGCCTCGGGGGTaGGTAGTGTCTGCCAGGATG +
Preference number: 2 (lower is better)
Translates to: MTLPPTNTSVPHARATNAHQPRG*VVSARM
Trigger: CATCCTGGCAGACACTACCCACCCCCGAGGCTGGTG...GGCATTAGTGGCTCGTGCGTGTGGGACACTAGTGTTTGTAGGTGGGAGTGTCAT
58% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000028188.8
3UTR CAA 90 bp TTGCCAGGTGCCAGCTCCGCTGGTAGGAACCAAAGAGCATGTCACTaGATAGACAGGGACCTGGTTGGGGAAGGAGTGTCACTGGCTCAG +
Preference number: 2 (lower is better)
Translates to: LPGASSAGRNQRACH*IDRDLVGEGVSLAQ
Trigger: CTGAGCCAGTGACACTCCTTCCCCAACCAGGTCCCTGTCTATCAAGTGACATGCTCTTTGGTTCCTACCAGCGGAGCTGGCACCTGGCAA
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000028188.8
3UTR-3UTR TCA 90 bp CTCAGGTCGGACCCCCACTCACAGCCACTGAGCCTGAATCCTGGCCTCTGGATTAAGGTGAAGGACTGTTaGCCTGGTCTCTCCCTACTA +
Preference number: 2 (lower is better)
Translates to: LRSDPHSQPLSLNPGLWIKVKDC*PGLSLL
Trigger: TAGTAGGGAGAGACCAGGTCAACAGTCCTTCACCTT...AATCCAGAGGCCAGGATTCAGGCTCAGTGGCTGTGAGTGGGGGTCCGACCTGAG
57% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000028188.8
3UTR-3UTR TCA 90 bp TGGTTGTGGGCCAAGTCCTGCAGTGACCATGGCCACAGATGGCTCGTTCTCCACCAGACATCAGACCAGTaGATGAAAGCCAGGGCTGGA +
Preference number: 2 (lower is better)
Translates to: WLWAKSCSDHGHRWLVLHQTSDQ*MKARAG
Trigger: TCCAGCCCTGGCTTTCATTCACTGGTCTGATGTCTG...GTGGAGAACGAGCCATCTGTGGCCATGGTCACTGCAGGACTTGGCCCACAACCA
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000028188.8
3UTR-3UTR GCA 90 bp TGGCCACAAATGAGAGAGAGCTGTGGCAGCTGCACAAGGTCCTCTGATAAGAGGTGGAGGGGACCAAGGTaGTGCCTGCCCCCAATTCTG +
Preference number: 2 (lower is better)
Translates to: WPQMRESCGSCTRSSDKRWRGPR*CLPPIL
Trigger: CAGAATTGGGGGCAGGCAGCACCTTGGTCCCCTCCA...CCTCTTATCAGAGGACCTTGTGCAGCTGCCACAGCTCTCTCTCATTTGTGGCCA
57% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000028188.8
3UTR-3UTR CCA 90 bp GCAACAGAAGCCACTTTAGCACCAGCCTCGGGGGTGGGTAGTGTCTGCCAGGATCCAAGCCAGGAAGAATaGGAGATGCTGCCTTACCAG +
Preference number: 2 (lower is better)
Translates to: ATEATLAPASGVGSVCQDPSQEE*EMLPYQ
Trigger: CTGGTAAGGCAGCATCTCCCATTCTTCCTGGCTTGG...ATCCTGGCAGACACTACCCACCCCCGAGGCTGGTGCTAAAGTGGCTTCTGTTGC
57% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000028188.8
3UTR-3UTR TCA 90 bp AGCAGGTCACACAGTTCATCGGTGGCTTCAGGCTTTGGTACAAGTCTGGCAGAAGCTGAGTTTCAGGGCTaGCCCTGGGCCATCCCTACT +
Preference number: 2 (lower is better)
Translates to: SRSHSSSVASGFGTSLAEAEFQG*PWAIPT
Trigger: AGTAGGGATGGCCCAGGGTCAGCCCTGAAACTCAGC...TTCTGCCAGACTTGTACCAAAGCCTGAAGCCACCGATGAACTGTGTGACCTGCT
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000028188.8
3UTR-3UTR TCA 90 bp CTCAGGTCGGACCCCCACTCACAGCCACTGAGCCTGAATCCTGGCCTCTGGATTCCACACTTGCATGTGTaGATCTGTTGCTTCACTCGA +
Preference number: 2 (lower is better)
Translates to: LRSDPHSQPLSLNPGLWIPHLHV*ICCFTR
Trigger: TCGAGTGAAGCAACAGATTCACACATGCAAGTGTGG...AATCCAGAGGCCAGGATTCAGGCTCAGTGGCTGTGAGTGGGGGTCCGACCTGAG
56% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000028188.8
3UTR-3UTR CCA 90 bp AGCAGGTCACACAGTTCATCGGTGGCTTCAGGCTTTGGTACAAGTCTGGCAGAAATAACCAGAGGACGCTaGCACTGGGCAGTGGGCCAG +
Preference number: 2 (lower is better)
Translates to: SRSHSSSVASGFGTSLAEITRGR*HWAVGQ
Trigger: CTGGCCCACTGCCCAGTGCCAGCGTCCTCTGGTTAT...TTCTGCCAGACTTGTACCAAAGCCTGAAGCCACCGATGAACTGTGTGACCTGCT
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000028188.8
3UTR-3UTR CCA 90 bp CTCAGGTCGGACCCCCACTCACAGCCACTGAGCCTGAATCCTGGCCTCTGGATTATGTTCTTGCAGCAGTaGGCATGGGATGAGATGTGT +
Preference number: 2 (lower is better)
Translates to: LRSDPHSQPLSLNPGLWIMFLQQ*AWDEMC
Trigger: ACACATCTCATCCCATGCCCACTGCTGCAAGAACAT...AATCCAGAGGCCAGGATTCAGGCTCAGTGGCTGTGAGTGGGGGTCCGACCTGAG
56% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000028188.8
3UTR-3UTR CCA 90 bp CTTGGCACAGCTAGCCTCAGGTCGGACCCCCACTCACAGCCACTGAGCCTGAATGCTTTGGTACAAGTCTaGCAGAAAGGAAAGGCATGG +
Preference number: 2 (lower is better)
Translates to: LGTASLRSDPHSQPLSLNALVQV*QKGKAW
Trigger: CCATGCCTTTCCTTTCTGCCAGACTTGTACCAAAGC...ATTCAGGCTCAGTGGCTGTGAGTGGGGGTCCGACCTGAGGCTAGCTGTGCCAAG
56% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000028188.8
3UTR-3UTR CCA 90 bp GCAACAGAAGCCACTTTAGCACCAGCCTCGGGGGTGGGTAGTGTCTGCCAGGATGGTGGCTTCAGGCTTTaGTACAAGTCTGGCAGAAAG +
Preference number: 2 (lower is better)
Translates to: ATEATLAPASGVGSVCQDGGFRL*YKSGRK
Trigger: CTTTCTGCCAGACTTGTACCAAAGCCTGAAGCCACC...ATCCTGGCAGACACTACCCACCCCCGAGGCTGGTGCTAAAGTGGCTTCTGTTGC
56% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000028188.8
3UTR-3UTR GCA 90 bp TGGCCACAAATGAGAGAGAGCTGTGGCAGCTGCACAAGGTCCTCTGATAAGAGGGGCAGAGCATGTTCTTaGAGCAGTGGGCATGGGATG +
Preference number: 2 (lower is better)
Translates to: WPQMRESCGSCTRSSDKRGRACS*SSGHGM
Trigger: CATCCCATGCCCACTGCTGCAAGAACATGCTCTGCC...CCTCTTATCAGAGGACCTTGTGCAGCTGCCACAGCTCTCTCTCATTTGTGGCCA
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000028188.8
3UTR-3UTR CCA 90 bp AGCAGGTCACACAGTTCATCGGTGGCTTCAGGCTTTGGTACAAGTCTGGCAGAACAAAGCCTGGGCAGGTaGGATTTGGGGTTGCCAGGT +
Preference number: 2 (lower is better)
Translates to: SRSHSSSVASGFGTSLAEQSLGR*DLGLPG
Trigger: ACCTGGCAACCCCAAATCCCACCTGCCCAGGCTTTG...TTCTGCCAGACTTGTACCAAAGCCTGAAGCCACCGATGAACTGTGTGACCTGCT
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000028188.8
3UTR-3UTR GCA 90 bp CCACAAAGCCAACCTAGGCTTGGAAAGATTTTCGATGCTTTGCAAAGTAGAGACGACAGTGCTCCCGCCTaGCCTTGGAGGGTGCACACC +
Preference number: 2 (lower is better)
Translates to: PQSQPRLGKIFDALQSRDDSAPA*PWRVHT
Trigger: GGTGTGCACCCTCCAAGGGCAGGCGGGAGCACTGTC...GTCTCTACTTTGCAAAGCATCGAAAATCTTTCCAAGCCTAGGTTGGCTTTGTGG
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000028188.8
3UTR-3UTR CCA 90 bp TGTTGCTTCATCACACTTCTGGGTTCCATGAGACTTCTGCTGGCATGTTGCTCCAGACAGGGACCTGGTTaGGGAAGGAGTGTCACTGGC +
Preference number: 2 (lower is better)
Translates to: CCFITLLGSMRLLLACCSRQGPG*GRSVTG
Trigger: GCCAGTGACACTCCTTCCCCAACCAGGTCCCTGTCT...GGAGCAACATGCCAGCAGAAGTCTCATGGAACCCAGAAGTGTGATGAAGCAACA
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000028188.8
3UTR-3UTR TCA 90 bp TGTTGCTTCATCACACTTCTGGGTTCCATGAGACTTCTGCTGGCATGTTGCTCCGCTACAGATCCTTGCTaGAGACCCGAGGCCCAATGT +
Preference number: 2 (lower is better)
Translates to: CCFITLLGSMRLLLACCSATDPC*RPEAQC
Trigger: ACATTGGGCCTCGGGTCTTCAGCAAGGATCTGTAGC...GGAGCAACATGCCAGCAGAAGTCTCATGGAACCCAGAAGTGTGATGAAGCAACA
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000028188.8
3UTR-3UTR GCA 90 bp TGGTTGTGGGCCAAGTCCTGCAGTGACCATGGCCACAGATGGCTCGTTCTCCACAATTCTGGATGTTTTTaGCAAGCCAGGAAGAATGGG +
Preference number: 2 (lower is better)
Translates to: WLWAKSCSDHGHRWLVLHNSGCF*QARKNG
Trigger: CCCATTCTTCCTGGCTTGGCAAAAACATCCAGAATT...GTGGAGAACGAGCCATCTGTGGCCATGGTCACTGCAGGACTTGGCCCACAACCA
52% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000028188.8
3UTR-3UTR CCA 90 bp TGTTGCTTCATCACACTTCTGGGTTCCATGAGACTTCTGCTGGCATGTTGCTCCCAGAAAGGAAAGGCATaGGCCTCTGCCTCCAGACAG +
Preference number: 2 (lower is better)
Translates to: CCFITLLGSMRLLLACCSQKGKA*ASASRQ
Trigger: CTGTCTGGAGGCAGAGGCCCATGCCTTTCCTTTCTG...GGAGCAACATGCCAGCAGAAGTCTCATGGAACCCAGAAGTGTGATGAAGCAACA
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000028188.8
3UTR-3UTR CCA 90 bp TGTTGCTTCATCACACTTCTGGGTTCCATGAGACTTCTGCTGGCATGTTGCTCCTTGCAGCAGTGGGCATaGGATGAGATGTGTAGGGAC +
Preference number: 2 (lower is better)
Translates to: CCFITLLGSMRLLLACCSLQQWA*DEMCRD
Trigger: GTCCCTACACATCTCATCCCATGCCCACTGCTGCAA...GGAGCAACATGCCAGCAGAAGTCTCATGGAACCCAGAAGTGTGATGAAGCAACA
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000028188.8
3UTR-3UTR CCA 90 bp AGCAGGTCACACAGTTCATCGGTGGCTTCAGGCTTTGGTACAAGTCTGGCAGAAGGACCTTGTTTGAGGTaGGAAAGAGCAGATGAGCTC +
Preference number: 2 (lower is better)
Translates to: SRSHSSSVASGFGTSLAEGPCLR*ERADEL
Trigger: GAGCTCATCTGCTCTTTCCCACCTCAAACAAGGTCC...TTCTGCCAGACTTGTACCAAAGCCTGAAGCCACCGATGAACTGTGTGACCTGCT
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000028188.8
3UTR-3UTR TCA 90 bp CCACAAAGCCAACCTAGGCTTGGAAAGATTTTCGATGCTTTGCAAAGTAGAGACCATCAGACCAGTGAATaGAAGCCAGGGCTGGAGGCT +
Preference number: 2 (lower is better)
Translates to: PQSQPRLGKIFDALQSRDHQTSE*KPGLEA
Trigger: AGCCTCCAGCCCTGGCTTTCATTCACTGGTCTGATG...GTCTCTACTTTGCAAAGCATCGAAAATCTTTCCAAGCCTAGGTTGGCTTTGTGG
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000028188.8
3UTR-3UTR CCA 90 bp ATCTTACCATCCAGTTCTTTTAAAGCCCCTGTCAGGCTTTCAGAAGAGCATCTCCAGAACACAAAAGCCTaGCACAGCCTCACCCCAGGA +
Preference number: 2 (lower is better)
Translates to: ILPSSSFKAPVRLSEEHLQNTKA*HSLTPG
Trigger: TCCTGGGGTGAGGCTGTGCCAGGCTTTTGTGTTCTG...GAGATGCTCTTCTGAAAGCCTGACAGGGGCTTTAAAAGAACTGGATGGTAAGAT
49% GC, longest homopolymer 4 nt, total homopolymer stretches 16 nt.
Matches the following 1 transcripts:
ENSMUST00000028188.8
3UTR CAA 90 bp CACACTTGCATGTGTGAATCTGTTGCTTCACTCGACGGAGTTTGTTaGATACCACATCAGAAAGCGCTTGGCACTTCTGAGCAGCGCTTA +
Preference number: 2 (lower is better)
Translates to: HTCMCESVASLDGVC*IPHQKALGTSEQRL
Trigger: TAAGCGCTGCTCAGAAGTGCCAAGCGCTTTCTGATGTGGTATCAAACAAACTCCGTCGAGTGAAGCAACAGATTCACACATGCAAGTGTG
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000028188.8
3UTR-3UTR TCA 90 bp TTTGGTAGAATCCACAAAGCCAACCTAGGCTTGGAAAGATTTTCGATGCTTTGCGGGCTGGCTGGCTTCTaGGAAGATCCTAGAGTCAGT +
Preference number: 2 (lower is better)
Translates to: FGRIHKANLGLERFSMLCGLAGF*EDPRVS
Trigger: ACTGACTCTAGGATCTTCTCAGAAGCCAGCCAGCCC...GCAAAGCATCGAAAATCTTTCCAAGCCTAGGTTGGCTTTGTGGATTCTACCAAA
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000028188.8
3UTR-3UTR TCA 90 bp TTTGGTAGAATCCACAAAGCCAACCTAGGCTTGGAAAGATTTTCGATGCTTTGCTGCACACCAGGAAGGTaGAGGACTGTTGACCTGGTC +
Preference number: 2 (lower is better)
Translates to: FGRIHKANLGLERFSMLCCTPGR*RTVDLV
Trigger: GACCAGGTCAACAGTCCTTCACCTTCCTGGTGTGCA...GCAAAGCATCGAAAATCTTTCCAAGCCTAGGTTGGCTTTGTGGATTCTACCAAA
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000028188.8
3UTR-3UTR GCA 90 bp CCACAAAGCCAACCTAGGCTTGGAAAGATTTTCGATGCTTTGCAAAGTAGAGACGAGAGCTGTGGCAGCTaGACAAGGTCCTCTGATAAG +
Preference number: 2 (lower is better)
Translates to: PQSQPRLGKIFDALQSRDESCGS*TRSSDK
Trigger: CTTATCAGAGGACCTTGTGCAGCTGCCACAGCTCTC...GTCTCTACTTTGCAAAGCATCGAAAATCTTTCCAAGCCTAGGTTGGCTTTGTGG
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000028188.8
3UTR-3UTR TCA 90 bp ATCTTACCATCCAGTTCTTTTAAAGCCCCTGTCAGGCTTTCAGAAGAGCATCTCGTGGGAAAGAGCAGATaGGCTCTGAAAGCAACCAGA +
Preference number: 2 (lower is better)
Translates to: ILPSSSFKAPVRLSEEHLVGKSR*ALKATR
Trigger: TCTGGTTGCTTTCAGAGCTCATCTGCTCTTTCCCAC...GAGATGCTCTTCTGAAAGCCTGACAGGGGCTTTAAAAGAACTGGATGGTAAGAT
47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000028188.8
3UTR-3UTR TCA 90 bp TTTGGTAGAATCCACAAAGCCAACCTAGGCTTGGAAAGATTTTCGATGCTTTGCCTGTCATTTCCAATGTaGCCAGACAGGGATGCATGT +
Preference number: 2 (lower is better)
Translates to: FGRIHKANLGLERFSMLCLSFPM*PDRDAC
Trigger: ACATGCATCCCTGTCTGGTCACATTGGAAATGACAG...GCAAAGCATCGAAAATCTTTCCAAGCCTAGGTTGGCTTTGTGGATTCTACCAAA
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000028188.8
3UTR-3UTR GCA 90 bp TTTGGTAGAATCCACAAAGCCAACCTAGGCTTGGAAAGATTTTCGATGCTTTGCAGAGGAGGTCACCATTaGCATCTTACCATCCAGTTC +
Preference number: 2 (lower is better)
Translates to: FGRIHKANLGLERFSMLCRGGHH*HLTIQF
Trigger: GAACTGGATGGTAAGATGGCAATGGTGACCTCCTCT...GCAAAGCATCGAAAATCTTTCCAAGCCTAGGTTGGCTTTGTGGATTCTACCAAA
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000028188.8
3UTR TCA 72 bp GGCTTAGGCCAGTCCCACCCTTGCCCCACAGGCAGATaGTGTGGGGCAGGACCCATGGGTGCTCTGCAGGAG +
Preference number: 3 (lower is better)
Translates to: GLGQSHPCPTGR*CGAGPMGALQE
Trigger: CTCCTGCAGAGCACCCATGGGTCCTGCCCCACATCATCTGCCTGTGGGGCAAGGGTGGGACTGGCCTAAGCC
65% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000028188.8
3UTR-3UTR CAA 90 bp CACCAGCCCAGGTTTGCAGGGGACCCAAGGCACTGTCTGCTCCCTGCATGCTGTCTGGGCAGGTGGGATTaGGGGTTGCCAGGTGCCAGC +
Preference number: 3 (lower is better)
Translates to: HQPRFAGDPRHCLLPACCLGRWD*GLPGAS
Trigger: GCTGGCACCTGGCAACCCCAAATCCCACCTGCCCAG...ACAGCATGCAGGGAGCAGACAGTGCCTTGGGTCCCCTGCAAACCTGGGCTGGTG
64% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000028188.8
3UTR-3UTR CAA 90 bp TGCAGGAATAGTGCTCCCAGGGACAGTGCTCCCGCCTGCCCTTGGAGGGTGCACGGTCTGGTCTTGGCCTaGGGGCTTTGTAGACAGCTG +
Preference number: 3 (lower is better)
Translates to: CRNSAPRDSAPACPWRVHGLVLA*GLCRQL
Trigger: CAGCTGTCTACAAAGCCCCAAGGCCAAGACCAGACC...GTGCACCCTCCAAGGGCAGGCGGGAGCACTGTCCCTGGGAGCACTATTCCTGCA
62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000028188.8
3UTR-3UTR CAA 90 bp CTTGGCACAGCTAGCCTCAGGTCGGACCCCCACTCACAGCCACTGAGCCTGAATAGGCCAGTCCCACCCTaGCCCCACAGGCAGATGATG +
Preference number: 3 (lower is better)
Translates to: LGTASLRSDPHSQPLSLNRPVPP*PHRQMM
Trigger: CATCATCTGCCTGTGGGGCAAGGGTGGGACTGGCCT...ATTCAGGCTCAGTGGCTGTGAGTGGGGGTCCGACCTGAGGCTAGCTGTGCCAAG
62% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000028188.8
3UTR CCA 72 bp CAAAGCACAGGGACCAAAGCCTGGGCAGGTGGGATTTaGGGTTGCCAGGTGCCAGCTCCGCTGGTAGGAACC +
Preference number: 3 (lower is better)
Translates to: QSTGTKAWAGGI*GCQVPAPLVGT
Trigger: GGTTCCTACCAGCGGAGCTGGCACCTGGCAACCCCAAATCCCACCTGCCCAGGCTTTGGTCCCTGTGCTTTG
62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000028188.8
3UTR-3UTR CAA 90 bp TGGTTGTGGGCCAAGTCCTGCAGTGACCATGGCCACAGATGGCTCGTTCTCCACCCAGGCCCTGAGGGATaGGGGTTAGGGCAGACAGGT +
Preference number: 3 (lower is better)
Translates to: WLWAKSCSDHGHRWLVLHPGPEG*GLGQTG
Trigger: ACCTGTCTGCCCTAACCCCAATCCCTCAGGGCCTGG...GTGGAGAACGAGCCATCTGTGGCCATGGTCACTGCAGGACTTGGCCCACAACCA
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000028188.8
3UTR-3UTR CAA 90 bp GGACCCAAGGCACTGTCTGCTCCCTGCATGCTGTCTAGGTGGCCACTGGCACGAGAGGGCAGGTGGACCTaGTTTGAGGTGGGAAAGAGC +
Preference number: 3 (lower is better)
Translates to: GPKALSAPCMLSRWPLAREGRWT*FEVGKS
Trigger: GCTCTTTCCCACCTCAAACAAGGTCCACCTGCCCTC...TCGTGCCAGTGGCCACCTAGACAGCATGCAGGGAGCAGACAGTGCCTTGGGTCC
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000028188.8
3UTR-3UTR CAA 90 bp CACCAGCCCAGGTTTGCAGGGGACCCAAGGCACTGTCTGCTCCCTGCATGCTGTGCAGAGATGGTAGTCTaGGGCCATGCTGAGTCCCAG +
Preference number: 3 (lower is better)
Translates to: HQPRFAGDPRHCLLPACCAEMVV*GHAESQ
Trigger: CTGGGACTCAGCATGGCCCAAGACTACCATCTCTGC...ACAGCATGCAGGGAGCAGACAGTGCCTTGGGTCCCCTGCAAACCTGGGCTGGTG
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000028188.8
3UTR TCA 72 bp ACCTCGGGCAACCTGCGCCAAAGGCAGATGAAGGAATaGGGCTTTGAGAGGCCCCCGGGCACTTTGGGTCCA +
Preference number: 3 (lower is better)
Translates to: TSGNLRQRQMKE*GFERPPGTLGP
Trigger: TGGACCCAAAGTGCCCGGGGGCCTCTCAAAGCCTCATTCCTTCATCTGCCTTTGGCGCAGGTTGCCCGAGGT
61% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000028188.8
3UTR TCA 72 bp CCACCAGAACCTCGGGCAACCTGCGCCAAAGGCAGATaGAGGAATGAGGCTTTGAGAGGCCCCCGGGCACTT +
Preference number: 3 (lower is better)
Translates to: PPEPRATCAKGR*RNEALRGPRAL
Trigger: AAGTGCCCGGGGGCCTCTCAAAGCCTCATTCCTTCATCTGCCTTTGGCGCAGGTTGCCCGAGGTTCTGGTGG
61% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000028188.8
3UTR GCA 72 bp ACAGGGACCAAAGCCTGGGCAGGTGGGATTTGGGGTTaGCAGGTGCCAGCTCCGCTGGTAGGAACCAAAGAG +
Preference number: 3 (lower is better)
Translates to: TGTKAWAGGIWG*QVPAPLVGTKE
Trigger: CTCTTTGGTTCCTACCAGCGGAGCTGGCACCTGGCAACCCCAAATCCCACCTGCCCAGGCTTTGGTCCCTGT
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000028188.8
3UTR GCA 72 bp TTTGCAGGGGACCCAAGGCACTGTCTGCTCCCTGCATaGTGTCTAGGTGGCCACTGGCACGACCCAGGTGTA +
Preference number: 3 (lower is better)
Translates to: FAGDPRHCLLPA*CLGGHWHDPGV
Trigger: TACACCTGGGTCGTGCCAGTGGCCACCTAGACAGCATGCAGGGAGCAGACAGTGCCTTGGGTCCCCTGCAAA
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000028188.8
3UTR GCA 72 bp GCTTCCAGCCCCAGGGCCCCATTGTATCTGACAGCATaGACACCTGCTCTGCTTGGCACAGCTAGCCTCAGG +
Preference number: 3 (lower is better)
Translates to: ASSPRAPLYLTA*TPALLGTASLR
Trigger: CCTGAGGCTAGCTGTGCCAAGCAGAGCAGGTGTGCATGCTGTCAGATACAATGGGGCCCTGGGGCTGGAAGC
61% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000028188.8
3UTR CCA 72 bp GCAGTGACCATGGCCACAGATGGCTCGTTCTCCACCTaGAGGCTTGGGGTGACACAGATGAGGGGCAGGGAA +
Preference number: 3 (lower is better)
Translates to: AVTMATDGSFST*RLGVTQMRGRE
Trigger: TTCCCTGCCCCTCATCTGTGTCACCCCAAGCCTCCAGGTGGAGAACGAGCCATCTGTGGCCATGGTCACTGC
61% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000028188.8
3UTR CCA 72 bp CAGCCCCAAGTAGCAACTAGGCCCACTGTTTGCCCATaGGGTGCTGCACTGACCCTCAGAGCTGCTTCCAGC +
Preference number: 3 (lower is better)
Translates to: QPQVATRPTVCP*GAALTLRAASS
Trigger: GCTGGAAGCAGCTCTGAGGGTCAGTGCAGCACCCCATGGGCAAACAGTGGGCCTAGTTGCTACTTGGGGCTG
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000028188.8
3UTR-3UTR CAA 90 bp TGCAGGAATAGTGCTCCCAGGGACAGTGCTCCCGCCTGCCCTTGGAGGGTGCACGCAGGTGGACCTTGTTaGAGGTGGGAAAGAGCAGAT +
Preference number: 3 (lower is better)
Translates to: CRNSAPRDSAPACPWRVHAGGPC*RWERAD
Trigger: ATCTGCTCTTTCCCACCTCAAACAAGGTCCACCTGC...GTGCACCCTCCAAGGGCAGGCGGGAGCACTGTCCCTGGGAGCACTATTCCTGCA
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000028188.8
3UTR TCA 72 bp CAGACAGGGATGCATGTCACCCTTCACCAGCTGCCCTaGTGGGCTGAGCTTCAGCTCCTGCATTCTGCAGCC +
Preference number: 3 (lower is better)
Translates to: QTGMHVTLHQLP*WAELQLLHSAA
Trigger: GGCTGCAGAATGCAGGAGCTGAAGCTCAGCCCATCAGGGCAGCTGGTGAAGGGTGACATGCATCCCTGTCTG
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000028188.8
3UTR CCA 72 bp AGTACTAGCCTGGCTTGGGAGAGAGCTTGGTGTCCCTaGGGCAGTGGCTGGGCTGAAGGGCTGTCATTTCCA +
Preference number: 3 (lower is better)
Translates to: STSLAWERAWCP*GSGWAEGLSFP
Trigger: TGGAAATGACAGCCCTTCAGCCCAGCCACTGCCCCAGGGACACCAAGCTCTCTCCCAAGCCAGGCTAGTACT
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000028188.8
3UTR CCA 72 bp CACTGTCTGCTCCCTGCATGCTGTCTAGGTGGCCACTaGCACGACCCAGGTGTACCCAGCTATGAGGCCTTT +
Preference number: 3 (lower is better)
Translates to: HCLLPACCLGGH*HDPGVPSYEAF
Trigger: AAAGGCCTCATAGCTGGGTACACCTGGGTCGTGCCAGTGGCCACCTAGACAGCATGCAGGGAGCAGACAGTG
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000028188.8
3UTR CCA 72 bp TTGTGGGCCAAGTCCTGCAGTGACCATGGCCACAGATaGCTCGTTCTCCACCTGGAGGCTTGGGGTGACACA +
Preference number: 3 (lower is better)
Translates to: LWAKSCSDHGHR*LVLHLEAWGDT
Trigger: TGTGTCACCCCAAGCCTCCAGGTGGAGAACGAGCCATCTGTGGCCATGGTCACTGCAGGACTTGGCCCACAA
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000028188.8
3UTR CCA 72 bp CCCCACTCACAGCCACTGAGCCTGAATCCTGGCCTCTaGATTTATGGATCCCTGCAGTTGCTGGGCCACCAG +
Preference number: 3 (lower is better)
Translates to: PHSQPLSLNPGL*IYGSLQLLGHQ
Trigger: CTGGTGGCCCAGCAACTGCAGGGATCCATAAATCCAGAGGCCAGGATTCAGGCTCAGTGGCTGTGAGTGGGG
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000028188.8
3UTR CCA 72 bp GTCGGACCCCCACTCACAGCCACTGAGCCTGAATCCTaGCCTCTGGATTTATGGATCCCTGCAGTTGCTGGG +
Preference number: 3 (lower is better)
Translates to: VGPPLTATEPES*PLDLWIPAVAG
Trigger: CCCAGCAACTGCAGGGATCCATAAATCCAGAGGCCAGGATTCAGGCTCAGTGGCTGTGAGTGGGGGTCCGAC
60% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000028188.8
3UTR-3UTR CAA 90 bp TGGTTGTGGGCCAAGTCCTGCAGTGACCATGGCCACAGATGGCTCGTTCTCCACTGTGCCACGGCCCAGTaGGCCACAAATGAGAGAGAG +
Preference number: 3 (lower is better)
Translates to: WLWAKSCSDHGHRWLVLHCATAQ*ATNERE
Trigger: CTCTCTCTCATTTGTGGCCAACTGGGCCGTGGCACA...GTGGAGAACGAGCCATCTGTGGCCATGGTCACTGCAGGACTTGGCCCACAACCA
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000028188.8
3UTR-3UTR CAA 90 bp CTCAGGTCGGACCCCCACTCACAGCCACTGAGCCTGAATCCTGGCCTCTGGATTACTTCTGCTGGCATGTaGCTCCTTAGATCACAGGGC +
Preference number: 3 (lower is better)
Translates to: LRSDPHSQPLSLNPGLWITSAGM*LLRSQG
Trigger: GCCCTGTGATCTAAGGAGCAACATGCCAGCAGAAGT...AATCCAGAGGCCAGGATTCAGGCTCAGTGGCTGTGAGTGGGGGTCCGACCTGAG
58% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000028188.8
3UTR TCA 72 bp GGAGTGTCACTGGCTCAGGAAGCTGAGTTTCAGGGCTaGCCCTGGGCCATCCCTACTAAAGAGCAGACCAGC +
Preference number: 3 (lower is better)
Translates to: GVSLAQEAEFQG*PWAIPTKEQTS
Trigger: GCTGGTCTGCTCTTTAGTAGGGATGGCCCAGGGTCAGCCCTGAAACTCAGCTTCCTGAGCCAGTGACACTCC
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000028188.8
3UTR TCA 72 bp TGTAGACAGCTGTGCCACGGCCCAGTTGGCCACAAATaGGAGAGAGCTGTGGCAGCTGCACAAGGTCCTCTG +
Preference number: 3 (lower is better)
Translates to: CRQLCHGPVGHK*ERAVAAAQGPL
Trigger: CAGAGGACCTTGTGCAGCTGCCACAGCTCTCTCTCATTTGTGGCCAACTGGGCCGTGGCACAGCTGTCTACA
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000028188.8
3UTR TCA 72 bp TCAGAGCTGCTTCCAGCCCCAGGGCCCCATTGTATCTaGCAGCATGCACACCTGCTCTGCTTGGCACAGCTA +
Preference number: 3 (lower is better)
Translates to: SELLPAPGPHCI*QHAHLLCLAQL
Trigger: TAGCTGTGCCAAGCAGAGCAGGTGTGCATGCTGTCAGATACAATGGGGCCCTGGGGCTGGAAGCAGCTCTGA
58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000028188.8
3UTR GCA 72 bp GCCACTTTAGCACCAGCCTCGGGGGTGGGTAGTGTCTaGCAGGATGTGTTTAAGCTCCCACACACCTCTGCA +
Preference number: 3 (lower is better)
Translates to: ATLAPASGVGSV*QDVFKLPHTSA
Trigger: TGCAGAGGTGTGTGGGAGCTTAAACACATCCTGGCAGACACTACCCACCCCCGAGGCTGGTGCTAAAGTGGC
58% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000028188.8
3UTR GCA 72 bp GTGACCAGACAGGGATGCATGTCACCCTTCACCAGCTaGCCTGATGGGCTGAGCTTCAGCTCCTGCATTCTG +
Preference number: 3 (lower is better)
Translates to: VTRQGCMSPFTS*PDGLSFSSCIL
Trigger: CAGAATGCAGGAGCTGAAGCTCAGCCCATCAGGGCAGCTGGTGAAGGGTGACATGCATCCCTGTCTGGTCAC
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000028188.8
3UTR CCA 72 bp ACAGCCACTGAGCCTGAATCCTGGCCTCTGGATTTATaGATCCCTGCAGTTGCTGGGCCACCAGAACCTCGG +
Preference number: 3 (lower is better)
Translates to: TATEPESWPLDL*IPAVAGPPEPR
Trigger: CCGAGGTTCTGGTGGCCCAGCAACTGCAGGGATCCATAAATCCAGAGGCCAGGATTCAGGCTCAGTGGCTGT
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000028188.8
3UTR TCA 72 bp ATCCTTGCTGAAGACCCGAGGCCCAATGTGAGGGACTaGGCAGGTCACACAGTTCATCGGTGGCTTCAGGCT +
Preference number: 3 (lower is better)
Translates to: ILAEDPRPNVRD*AGHTVHRWLQA
Trigger: AGCCTGAAGCCACCGATGAACTGTGTGACCTGCTCAGTCCCTCACATTGGGCCTCGGGTCTTCAGCAAGGAT
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000028188.8
3UTR TCA 72 bp ACGGCTTTGACTCTCACAGGTGCTACAGATCCTTGCTaGAGACCCGAGGCCCAATGTGAGGGACTGAGCAGG +
Preference number: 3 (lower is better)
Translates to: TALTLTGATDPC*RPEAQCEGLSR
Trigger: CCTGCTCAGTCCCTCACATTGGGCCTCGGGTCTTCAGCAAGGATCTGTAGCACCTGTGAGAGTCAAAGCCGT
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000028188.8
3UTR TCA 72 bp CAACCTGCGCCAAAGGCAGATGAAGGAATGAGGCTTTaGGAGGCCCCCGGGCACTTTGGGTCCATGTTGCTT +
Preference number: 3 (lower is better)
Translates to: QPAPKADEGMRL*EAPGHFGSMLL
Trigger: AAGCAACATGGACCCAAAGTGCCCGGGGGCCTCTCAAAGCCTCATTCCTTCATCTGCCTTTGGCGCAGGTTG
57% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000028188.8
3UTR GCA 72 bp CAGACCAGCCATGCACAGGTGGGCAGAGCATGTTCTTaGAGCAGTGGGCATGGGATGAGATGTGTAGGGACT +
Preference number: 3 (lower is better)
Translates to: QTSHAQVGRACS*SSGHGMRCVGT
Trigger: AGTCCCTACACATCTCATCCCATGCCCACTGCTGCAAGAACATGCTCTGCCCACCTGTGCATGGCTGGTCTG
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000028188.8
3UTR-3UTR CAA 90 bp CTCAGGTCGGACCCCCACTCACAGCCACTGAGCCTGAATCCTGGCCTCTGGATTCAAAGAGCATGTCACTaGATAGACAGGGACCTGGTT +
Preference number: 3 (lower is better)
Translates to: LRSDPHSQPLSLNPGLWIQRACH*IDRDLV
Trigger: AACCAGGTCCCTGTCTATCAAGTGACATGCTCTTTG...AATCCAGAGGCCAGGATTCAGGCTCAGTGGCTGTGAGTGGGGGTCCGACCTGAG
56% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000028188.8
3UTR TCA 72 bp TCAGAGGTGAGAAGGTCTGAGCCTTCCACTTTGATCTaGTGGAGGGGACCAAGGTGCTGCCTGCCCCCAATT +
Preference number: 3 (lower is better)
Translates to: SEVRRSEPSTLI*WRGPRCCLPPI
Trigger: AATTGGGGGCAGGCAGCACCTTGGTCCCCTCCATCAGATCAAAGTGGAAGGCTCAGACCTTCTCACCTCTGA
56% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000028188.8
3UTR TCA 72 bp CCCAAACTTCCCAGCATTCCTGCTTCCCGTGGTCACTaGTCACAGGTGGCAGCCACCTACACAGACATCAGA +
Preference number: 3 (lower is better)
Translates to: PKLPSIPASRGH*SQVAATYTDIR
Trigger: TCTGATGTCTGTGTAGGTGGCTGCCACCTGTGATCAGTGACCACGGGAAGCAGGAATGCTGGGAAGTTTGGG
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000028188.8
3UTR GCA 72 bp AAGCCAGGAAGAATGGGAGATGCTGCCTTACCAGGATaGAGCAGACAAAGCACAGGGACCAAAGCCTGGGCA +
Preference number: 3 (lower is better)
Translates to: KPGRMGDAALPG*SRQSTGTKAWA
Trigger: TGCCCAGGCTTTGGTCCCTGTGCTTTGTCTGCTGCATCCTGGTAAGGCAGCATCTCCCATTCTTCCTGGCTT
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000028188.8
3UTR GCA 72 bp ACACTTCTGGGTTCCATGAGACTTCTGCTGGCATGTTaGTCCTTAGATCACAGGGCTCAGGGCAGCTGTGGG +
Preference number: 3 (lower is better)
Translates to: TLLGSMRLLLAC*SLDHRAQGSCG
Trigger: CCCACAGCTGCCCTGAGCCCTGTGATCTAAGGAGCAACATGCCAGCAGAAGTCTCATGGAACCCAGAAGTGT
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000028188.8
3UTR GCA 72 bp GGCTTTGAGAGGCCCCCGGGCACTTTGGGTCCATGTTaGTTCATCACACTTCTGGGTTCCATGAGACTTCTG +
Preference number: 3 (lower is better)
Translates to: GFERPPGTLGPC*FITLLGSMRLL
Trigger: CAGAAGTCTCATGGAACCCAGAAGTGTGATGAAGCAACATGGACCCAAAGTGCCCGGGGGCCTCTCAAAGCC
56% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000028188.8
3UTR CCA 72 bp CAGGCTTTGGTACAAGTCTGGCAGAAAGGAAAGGCATaGGCCTCTGCCTCCAGACAGAGGAGGTCACCATTG +
Preference number: 3 (lower is better)
Translates to: QALVQVWQKGKA*ASASRQRRSPL
Trigger: CAATGGTGACCTCCTCTGTCTGGAGGCAGAGGCCCATGCCTTTCCTTTCTGCCAGACTTGTACCAAAGCCTG
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000028188.8
3UTR GCA 72 bp GGTACAAGTCTGGCAGAAAGGAAAGGCATGGGCCTCTaGCTCCAGACAGAGGAGGTCACCATTGCCATCTTA +
Preference number: 3 (lower is better)
Translates to: GTSLAERKGMGL*LQTEEVTIAIL
Trigger: TAAGATGGCAATGGTGACCTCCTCTGTCTGGAGGCAGAGGCCCATGCCTTTCCTTTCTGCCAGACTTGTACC
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000028188.8
3UTR-3UTR CAA 90 bp TGGTTGTGGGCCAAGTCCTGCAGTGACCATGGCCACAGATGGCTCGTTCTCCACCAATTCTGGATGTTTTaGCCAAGCCAGGAAGAATGG +
Preference number: 3 (lower is better)
Translates to: WLWAKSCSDHGHRWLVLHQFWMF*PSQEEW
Trigger: CCATTCTTCCTGGCTTGGCAAAAACATCCAGAATTG...GTGGAGAACGAGCCATCTGTGGCCATGGTCACTGCAGGACTTGGCCCACAACCA
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000028188.8
3UTR TCA 72 bp TTGTTTGATACCACATCAGAAAGCGCTTGGCACTTCTaGGCAGCGCTTACAGCGGCAGCTGGCAACAGAAGC +
Preference number: 3 (lower is better)
Translates to: LFDTTSESAWHF*AALTAAAGNRS
Trigger: GCTTCTGTTGCCAGCTGCCGCTGTAAGCGCTGCTCAGAAGTGCCAAGCGCTTTCTGATGTGGTATCAAACAA
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000028188.8
3UTR TCA 72 bp CTGGCCCACAGCCCTCCTGTCCCACACTTGCATGTGTaGATCTGTTGCTTCACTCGACGGAGTTTGTTTGAT +
Preference number: 3 (lower is better)
Translates to: LAHSPPVPHLHV*ICCFTRRSLFD
Trigger: ATCAAACAAACTCCGTCGAGTGAAGCAACAGATTCACACATGCAAGTGTGGGACAGGAGGGCTGTGGGCCAG
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000028188.8
3UTR CCA 72 bp GGACTTTCCTATGTATCCCTTGTCCCATCAGAACCTTaGCTACTCTACTCATGTTTCGTGCCACCAGCGCGG +
Preference number: 3 (lower is better)
Translates to: GLSYVSLVPSEP*LLYSCFVPPAR
Trigger: CCGCGCTGGTGGCACGAAACATGAGTAGAGTAGCCAAGGTTCTGATGGGACAAGGGATACATAGGAAAGTCC
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000028188.8
3UTR-3UTR CAA 90 bp ATCTTACCATCCAGTTCTTTTAAAGCCCCTGTCAGGCTTTCAGAAGAGCATCTCAGGTGGGATTTGGGGTaGCCAGGTGCCAGCTCCGCT +
Preference number: 3 (lower is better)
Translates to: ILPSSSFKAPVRLSEEHLRWDLG*PGASSA
Trigger: AGCGGAGCTGGCACCTGGCAACCCCAAATCCCACCT...GAGATGCTCTTCTGAAAGCCTGACAGGGGCTTTAAAAGAACTGGATGGTAAGAT
52% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 1 transcripts:
ENSMUST00000028188.8
3UTR TCA 72 bp CAAAGTAGAGACAGCCACAGTGCCAAGACCCTCGTGTaGGATGTGGAGACTCTTCCCAAGAAGATAAGCAGT +
Preference number: 3 (lower is better)
Translates to: QSRDSHSAKTLV*DVETLPKKISS
Trigger: ACTGCTTATCTTCTTGGGAAGAGTCTCCACATCTCACACGAGGGTCTTGGCACTGTGGCTGTCTCTACTTTG
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000028188.8
3UTR-3UTR CAA 90 bp CCACAAAGCCAACCTAGGCTTGGAAAGATTTTCGATGCTTTGCAAAGTAGAGACTCACCCGTGCAGGTGTaGAGAAGGCTGGACAAGGAA +
Preference number: 3 (lower is better)
Translates to: PQSQPRLGKIFDALQSRDSPVQV*RRLDKE
Trigger: TTCCTTGTCCAGCCTTCTCAACACCTGCACGGGTGA...GTCTCTACTTTGCAAAGCATCGAAAATCTTTCCAAGCCTAGGTTGGCTTTGTGG
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000028188.8
3UTR-3UTR CAA 90 bp CCACAAAGCCAACCTAGGCTTGGAAAGATTTTCGATGCTTTGCAAAGTAGAGACCACATCAGAAAGCGCTaGGCACTTCTGAGCAGCGCT +
Preference number: 3 (lower is better)
Translates to: PQSQPRLGKIFDALQSRDHIRKR*ALLSSA
Trigger: AGCGCTGCTCAGAAGTGCCAAGCGCTTTCTGATGTG...GTCTCTACTTTGCAAAGCATCGAAAATCTTTCCAAGCCTAGGTTGGCTTTGTGG
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000028188.8
3UTR TCA 72 bp TGTGTGAATCTGTTGCTTCACTCGACGGAGTTTGTTTaGTACCACATCAGAAAGCGCTTGGCACTTCTGAGC +
Preference number: 3 (lower is better)
Translates to: CVNLLLHSTEFV*YHIRKRLALLS
Trigger: GCTCAGAAGTGCCAAGCGCTTTCTGATGTGGTATCAAACAAACTCCGTCGAGTGAAGCAACAGATTCACACA
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000028188.8
3UTR TCA 72 bp TCTTCCCAAGAAGATAAGCAGTGTGGCTCTGCCAGGTaGCTTCATAGACTCACCCTGGTTAGTCATTCCATT +
Preference number: 3 (lower is better)
Translates to: SSQEDKQCGSAR*LHRLTLVSHSI
Trigger: AATGGAATGACTAACCAGGGTGAGTCTATGAAGTCACCTGGCAGAGCCACACTGCTTATCTTCTTGGGAAGA
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000028188.8
3UTR CCA 72 bp AGTGTGGCTCTGCCAGGTGACTTCATAGACTCACCCTaGTTAGTCATTCCATTGACAAACCAAAGTAGGTCT +
Preference number: 3 (lower is better)
Translates to: SVALPGDFIDSP*LVIPLTNQSRS
Trigger: AGACCTACTTTGGTTTGTCAATGGAATGACTAACCAGGGTGAGTCTATGAAGTCACCTGGCAGAGCCACACT
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000028188.8
3UTR TCA 72 bp CTCATACATATCTCCCACCTCAGAGTCAAGTCATCTTaGGGACGGCATCTGTTGCTCATAGACTTTCTGGTT +
Preference number: 3 (lower is better)
Translates to: LIHISHLRVKSS*GRHLLLIDFLV
Trigger: AACCAGAAAGTCTATGAGCAACAGATGCCGTCCTCAAGATGACTTGACTCTGAGGTGGGAGATATGTATGAG
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000028188.8
3UTR-3UTR CAA 90 bp CCACAAAGCCAACCTAGGCTTGGAAAGATTTTCGATGCTTTGCAAAGTAGAGACTGGTTAGTCATTCCATaGACAAACCAAAGTAGGTCT +
Preference number: 3 (lower is better)
Translates to: PQSQPRLGKIFDALQSRDWLVIP*TNQSRS
Trigger: AGACCTACTTTGGTTTGTCAATGGAATGACTAACCA...GTCTCTACTTTGCAAAGCATCGAAAATCTTTCCAAGCCTAGGTTGGCTTTGTGG
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000028188.8
CDS-3UTR TCA 90 bp TGCAGGAATAGTGCTCCCAGGGACAGTGCTCCCGCCTGCCCTTGGAGGGTGCACCACTCTGCAGGGTGCTaGGGCCCTGGCCCAGCAGGC +
Preference number: 4 (lower is better)
Translates to: CRNSAPRDSAPACPWRVHHSAGC*GPGPAG
Trigger: GCCTGCTGGGCCAGGGCCTCAGCACCCTGCAGAGTG...GTGCACCCTCCAAGGGCAGGCGGGAGCACTGTCCCTGGGAGCACTATTCCTGCA
68% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000028188.8
CDS-3UTR GCA 90 bp GCAGCGCTTACAGCGGCAGCTGGCAACAGAAGCCACTTTAGCACCAGCCTCGGGTGGGTGGGGGCGCCGTaGCTGGTGTGTGGGTGTGGT +
Preference number: 4 (lower is better)
Translates to: AALTAAAGNRSHFSTSLGWVGAP*LVCGCG
Trigger: ACCACACCCACACACCAGGCACGGCGCCCCCACCCA...CCCGAGGCTGGTGCTAAAGTGGCTTCTGTTGCCAGCTGCCGCTGTAAGCGCTGC
66% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000028188.8
CDS-3UTR CCA 90 bp CACCAGCCCAGGTTTGCAGGGGACCCAAGGCACTGTCTGCTCCCTGCATGCTGTAGCAGCCGGGGCAGCTaGTCAGCCAGTGCGTCCAGC +
Preference number: 4 (lower is better)
Translates to: HQPRFAGDPRHCLLPACCSSRGS*SASASS
Trigger: GCTGGACGCACTGGCTGACCAGCTGCCCCGGCTGCT...ACAGCATGCAGGGAGCAGACAGTGCCTTGGGTCCCCTGCAAACCTGGGCTGGTG
66% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000028188.8
CDS-3UTR TCA 90 bp GGACCCAAGGCACTGTCTGCTCCCTGCATGCTGTCTAGGTGGCCACTGGCACGATCTGAAGGTCAGCCTTaGCACGGGGCCGGCCTAGGC +
Preference number: 4 (lower is better)
Translates to: GPKALSAPCMLSRWPLARSEGQP*HGAGLG
Trigger: GCCTAGGCCGGCCCCGTGTCAAGGCTGACCTTCAGA...TCGTGCCAGTGGCCACCTAGACAGCATGCAGGGAGCAGACAGTGCCTTGGGTCC
64% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000028188.8
CDS-3UTR GCA 90 bp GGACCCAAGGCACTGTCTGCTCCCTGCATGCTGTCTAGGTGGCCACTGGCACGAGGATGGAGGCCTGGATaGCTTCCAGGCGGGCGAAGC +
Preference number: 4 (lower is better)
Translates to: GPKALSAPCMLSRWPLARGWRPG*LPGGRS
Trigger: GCTTCGCCCGCCTGGAAGGCATCCAGGCCTCCATCC...TCGTGCCAGTGGCCACCTAGACAGCATGCAGGGAGCAGACAGTGCCTTGGGTCC
64% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000028188.8
CDS-3UTR GCA 90 bp CACCAGCCCAGGTTTGCAGGGGACCCAAGGCACTGTCTGCTCCCTGCATGCTGTGGGAGTCACCTGCGGTaGCGGAGTAGTCAGCCACCG +
Preference number: 4 (lower is better)
Translates to: HQPRFAGDPRHCLLPACCGSHLR*RSSQPP
Trigger: CGGTGGCTGACTACTCCGGCACCGCAGGTGACTCCC...ACAGCATGCAGGGAGCAGACAGTGCCTTGGGTCCCCTGCAAACCTGGGCTGGTG
64% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000028188.8
CDS-3UTR CCA 90 bp TGCAGGAATAGTGCTCCCAGGGACAGTGCTCCCGCCTGCCCTTGGAGGGTGCACAGCCTCGGCTGTGCCTaGTGCTCACTCAGTGCCCGA +
Preference number: 4 (lower is better)
Translates to: CRNSAPRDSAPACPWRVHSLGCA*CSLSAR
Trigger: TCGGGCACTGAGTGAGCACCAGGCACAGCCGAGGCT...GTGCACCCTCCAAGGGCAGGCGGGAGCACTGTCCCTGGGAGCACTATTCCTGCA
64% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000028188.8
3UTR CAA 72 bp CCAGGAGGTCCTCACTGGCTTAGGCCAGTCCCACCCTaGCCCCACAGGCAGATGATGTGGGGCAGGACCCAT +
Preference number: 4 (lower is better)
Translates to: PGGPHWLRPVPP*PHRQMMWGRTH
Trigger: ATGGGTCCTGCCCCACATCATCTGCCTGTGGGGCAAGGGTGGGACTGGCCTAAGCCAGTGAGGACCTCCTGG
64% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000028188.8
CDS-3UTR TCA 90 bp TGGCCACAAATGAGAGAGAGCTGTGGCAGCTGCACAAGGTCCTCTGATAAGAGGCGGCAGTCCCCGTGCTaGCGATGGGTGGGGGCGCCG +
Preference number: 4 (lower is better)
Translates to: WPQMRESCGSCTRSSDKRRQSPC*RWVGAP
Trigger: CGGCGCCCCCACCCATCGTCAGCACGGGGACTGCCG...CCTCTTATCAGAGGACCTTGTGCAGCTGCCACAGCTCTCTCTCATTTGTGGCCA
63% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000028188.8
CDS-3UTR TCA 90 bp CACCAGCCCAGGTTTGCAGGGGACCCAAGGCACTGTCTGCTCCCTGCATGCTGTTGTGTGGTCAGGGCGTaGATCCGCTTGAGCCCCAGC +
Preference number: 4 (lower is better)
Translates to: HQPRFAGDPRHCLLPACCCVVRA*IRLSPS
Trigger: GCTGGGGCTCAAGCGGATTCACGCCCTGACCACACA...ACAGCATGCAGGGAGCAGACAGTGCCTTGGGTCCCCTGCAAACCTGGGCTGGTG
63% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000028188.8
CDS-3UTR GCA 90 bp TGCAGGAATAGTGCTCCCAGGGACAGTGCTCCCGCCTGCCCTTGGAGGGTGCACCCAGCACATTCAGCCTaGAGCTCAGAGGCCCGGGTT +
Preference number: 4 (lower is better)
Translates to: CRNSAPRDSAPACPWRVHPAHSA*SSEARV
Trigger: AACCCGGGCCTCTGAGCTGCAGGCTGAATGTGCTGG...GTGCACCCTCCAAGGGCAGGCGGGAGCACTGTCCCTGGGAGCACTATTCCTGCA
63% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000028188.8
CDS-3UTR CCA 90 bp GCTGGTTGTGGGCCAAGTCCTGCAGTGACCATGGCCACAGATGGCTCGTTCTCCTGGGGGCGCCGTGCCTaGTGTGTGGGTGTGGTTCAG +
Preference number: 4 (lower is better)
Translates to: AGCGPSPAVTMATDGSFSWGRRA*CVGVVQ
Trigger: CTGAACCACACCCACACACCAGGCACGGCGCCCCCA...GGAGAACGAGCCATCTGTGGCCATGGTCACTGCAGGACTTGGCCCACAACCAGC
63% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000028188.8
CDS-3UTR CCA 90 bp GCAACAGAAGCCACTTTAGCACCAGCCTCGGGGGTGGGTAGTGTCTGCCAGGATCGTGCTGACGATGGGTaGGGGCGCCGTGCCTGGTGT +
Preference number: 4 (lower is better)
Translates to: ATEATLAPASGVGSVCQDRADDG*GRRAWC
Trigger: ACACCAGGCACGGCGCCCCCACCCATCGTCAGCACG...ATCCTGGCAGACACTACCCACCCCCGAGGCTGGTGCTAAAGTGGCTTCTGTTGC
63% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000028188.8
CDS-3UTR TCA 90 bp AGCAGACAAAGCACAGGGACCAAAGCCTGGGCAGGTGGGATTTGGGGTTGCCAGGCCAGTGCTCTCCTGTaGGCTTGCCGAAGCCCTCCC +
Preference number: 4 (lower is better)
Translates to: SRQSTGTKAWAGGIWGCQASALL*ACRSPP
Trigger: GGGAGGGCTTCGGCAAGCTCACAGGAGAGCACTGGC...CTGGCAACCCCAAATCCCACCTGCCCAGGCTTTGGTCCCTGTGCTTTGTCTGCT
62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000028188.8
CDS-3UTR GCA 90 bp AGGTCGGCAGAACACAAAAGCCTGGCACAGCCTCACCCCAGGAGGTCCTCACTGGTCCAGCCTCGGCTGTaGCTGGTGCTCACTCAGTGC +
Preference number: 4 (lower is better)
Translates to: RSAEHKSLAQPHPRRSSLVQPRL*LVLTQC
Trigger: GCACTGAGTGAGCACCAGGCACAGCCGAGGCTGGAC...CAGTGAGGACCTCCTGGGGTGAGGCTGTGCCAGGCTTTTGTGTTCTGCCGACCT
62% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000028188.8
CDS-3UTR GCA 90 bp CTCAGGTCGGACCCCCACTCACAGCCACTGAGCCTGAATCCTGGCCTCTGGATTAGGCCCCGCTCCCTCTaGAGAGCCTCCAGGACATCA +
Preference number: 4 (lower is better)
Translates to: LRSDPHSQPLSLNPGLWIRPRSL*RASRTS
Trigger: TGATGTCCTGGAGGCTCTGCAGAGGGAGCGGGGCCT...AATCCAGAGGCCAGGATTCAGGCTCAGTGGCTGTGAGTGGGGGTCCGACCTGAG
62% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000028188.8
CDS-3UTR GCA 90 bp TTGGGGAAGGAGTGTCACTGGCTCAGGAAGCTGAGTTTCAGGGCTGACCCTGGGCCACTCGACGCCGTCTaGGTAGGAGGCGTGTGCACC +
Preference number: 4 (lower is better)
Translates to: LGKECHWLRKLSFRADPGPLDAV*VGGVCT
Trigger: GGTGCACACGCCTCCTACGCAGACGGCGTCGAGTGG...CCCAGGGTCAGCCCTGAAACTCAGCTTCCTGAGCCAGTGACACTCCTTCCCCAA
62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000028188.8
CDS-3UTR CCA 90 bp TTGGGGAAGGAGTGTCACTGGCTCAGGAAGCTGAGTTTCAGGGCTGACCCTGGGGGTCGGTCCTCAAGTTaGGACGCGCTGCCCACGGTC +
Preference number: 4 (lower is better)
Translates to: LGKECHWLRKLSFRADPGGRSSS*DALPTV
Trigger: GACCGTGGGCAGCGCGTCCCAACTTGAGGACCGACC...CCCAGGGTCAGCCCTGAAACTCAGCTTCCTGAGCCAGTGACACTCCTTCCCCAA
62% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000028188.8
CDS-3UTR CCA 90 bp CAGGGCTGGCTGGCTTCTGAGAAGATCCTAGAGTCAGTCCATGGAGGTCGGCAGCGAAGGATGGAGGCCTaGATGCCTTCCAGGCGGGCG +
Preference number: 4 (lower is better)
Translates to: QGWLASEKILESVHGGRQRRMEA*MPSRRA
Trigger: CGCCCGCCTGGAAGGCATCCAGGCCTCCATCCTTCG...CTGCCGACCTCCATGGACTGACTCTAGGATCTTCTCAGAAGCCAGCCAGCCCTG
62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000028188.8
CDS-3UTR GCA 90 bp TGGTTGTGGGCCAAGTCCTGCAGTGACCATGGCCACAGATGGCTCGTTCTCCACCAAGTTGGGACGCGCTaGCCACGGTCTTCCACCGCT +
Preference number: 4 (lower is better)
Translates to: WLWAKSCSDHGHRWLVLHQVGTR*PRSSTA
Trigger: AGCGGTGGAAGACCGTGGGCAGCGCGTCCCAACTTG...GTGGAGAACGAGCCATCTGTGGCCATGGTCACTGCAGGACTTGGCCCACAACCA
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000028188.8
CDS-3UTR GCA 90 bp TGCAGGAATAGTGCTCCCAGGGACAGTGCTCCCGCCTGCCCTTGGAGGGTGCACGTGAAGCTCGTATGCTaGTTGTGTGGTCAGGGCGTG +
Preference number: 4 (lower is better)
Translates to: CRNSAPRDSAPACPWRVHVKLVC*LCGQGV
Trigger: CACGCCCTGACCACACAAGCAGCATACGAGCTTCAC...GTGCACCCTCCAAGGGCAGGCGGGAGCACTGTCCCTGGGAGCACTATTCCTGCA
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000028188.8
CDS-3UTR GCA 90 bp TTGGGGAAGGAGTGTCACTGGCTCAGGAAGCTGAGTTTCAGGGCTGACCCTGGGTGCGTAGGAGGCGTGTaGACCACGCAGGTACTGGCC +
Preference number: 4 (lower is better)
Translates to: LGKECHWLRKLSFRADPGCVGGV*TTQVLA
Trigger: GGCCAGTACCTGCGTGGTGCACACGCCTCCTACGCA...CCCAGGGTCAGCCCTGAAACTCAGCTTCCTGAGCCAGTGACACTCCTTCCCCAA
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000028188.8
CDS-3UTR CCA 90 bp CACCAGCCCAGGTTTGCAGGGGACCCAAGGCACTGTCTGCTCCCTGCATGCTGTCAGTTGTTCTCCGAGTaGTCGCTGTCCCGGTCCTTG +
Preference number: 4 (lower is better)
Translates to: HQPRFAGDPRHCLLPACCQLFSE*SLSRSL
Trigger: CAAGGACCGGGACAGCGACCACTCGGAGAACAACTG...ACAGCATGCAGGGAGCAGACAGTGCCTTGGGTCCCCTGCAAACCTGGGCTGGTG
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000028188.8
3UTR CAA 72 bp CACAGGGACCAAAGCCTGGGCAGGTGGGATTTGGGGTaGCCAGGTGCCAGCTCCGCTGGTAGGAACCAAAGA +
Preference number: 4 (lower is better)
Translates to: HRDQSLGRWDLG*PGASSAGRNQR
Trigger: TCTTTGGTTCCTACCAGCGGAGCTGGCACCTGGCAACCCCAAATCCCACCTGCCCAGGCTTTGGTCCCTGTG
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000028188.8
3UTR CAA 72 bp CTGACCCTCAGAGCTGCTTCCAGCCCCAGGGCCCCATaGTATCTGACAGCATGCACACCTGCTCTGCTTGGC +
Preference number: 4 (lower is better)
Translates to: LTLRAASSPRAP*YLTACTPALLG
Trigger: GCCAAGCAGAGCAGGTGTGCATGCTGTCAGATACAATGGGGCCCTGGGGCTGGAAGCAGCTCTGAGGGTCAG
61% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000028188.8
CDS-3UTR GCA 90 bp AGCAGACAAAGCACAGGGACCAAAGCCTGGGCAGGTGGGATTTGGGGTTGCCAGCTGGTGCTCACTCAGTaGCCGAAGGATGGAGGCCTG +
Preference number: 4 (lower is better)
Translates to: SRQSTGTKAWAGGIWGCQLVLTQ*PKDGGL
Trigger: CAGGCCTCCATCCTTCGGGCACTGAGTGAGCACCAG...CTGGCAACCCCAAATCCCACCTGCCCAGGCTTTGGTCCCTGTGCTTTGTCTGCT
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000028188.8
CDS-3UTR GCA 90 bp AGCAGACAAAGCACAGGGACCAAAGCCTGGGCAGGTGGGATTTGGGGTTGCCAGGCAGGCTGTGTCCCTTaGGCAGCCCAGCACATTCAG +
Preference number: 4 (lower is better)
Translates to: SRQSTGTKAWAGGIWGCQAGCVP*AAQHIQ
Trigger: CTGAATGTGCTGGGCTGCGCAAGGGACACAGCCTGC...CTGGCAACCCCAAATCCCACCTGCCCAGGCTTTGGTCCCTGTGCTTTGTCTGCT
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000028188.8
CDS-3UTR CCA 90 bp CTCAGGTCGGACCCCCACTCACAGCCACTGAGCCTGAATCCTGGCCTCTGGATTGCCGTGCCTGGTGTGTaGGTGTGGTTCAGGAAGAGA +
Preference number: 4 (lower is better)
Translates to: LRSDPHSQPLSLNPGLWIAVPGV*VWFRKR
Trigger: TCTCTTCCTGAACCACACCCACACACCAGGCACGGC...AATCCAGAGGCCAGGATTCAGGCTCAGTGGCTGTGAGTGGGGGTCCGACCTGAG
60% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000028188.8
CDS-3UTR CCA 90 bp TGGCCACAAATGAGAGAGAGCTGTGGCAGCTGCACAAGGTCCTCTGATAAGAGGAGGGTGCTGAGGCCCTaGCCCAGCAGGCTGTGTCCC +
Preference number: 4 (lower is better)
Translates to: WPQMRESCGSCTRSSDKRRVLRP*PSRLCP
Trigger: GGGACACAGCCTGCTGGGCCAGGGCCTCAGCACCCT...CCTCTTATCAGAGGACCTTGTGCAGCTGCCACAGCTCTCTCTCATTTGTGGCCA
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000028188.8
3UTR CAA 72 bp CTGAATCCTGGCCTCTGGATTTATGGATCCCTGCAGTaGCTGGGCCACCAGAACCTCGGGCAACCTGCGCCA +
Preference number: 4 (lower is better)
Translates to: LNPGLWIYGSLQ*LGHQNLGQPAP
Trigger: TGGCGCAGGTTGCCCGAGGTTCTGGTGGCCCAGCAACTGCAGGGATCCATAAATCCAGAGGCCAGGATTCAG
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000028188.8
CDS-3UTR TCA 90 bp CTTGGCACAGCTAGCCTCAGGTCGGACCCCCACTCACAGCCACTGAGCCTGAATCAGAGAGAAGCTGGATaGGGCGACCCTGTTCACTCT +
Preference number: 4 (lower is better)
Translates to: LGTASLRSDPHSQPLSLNQREAG*GDPVHS
Trigger: AGAGTGAACAGGGTCGCCTCATCCAGCTTCTCTCTG...ATTCAGGCTCAGTGGCTGTGAGTGGGGGTCCGACCTGAGGCTAGCTGTGCCAAG
59% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000028188.8
CDS-3UTR TCA 90 bp TTGGGGAAGGAGTGTCACTGGCTCAGGAAGCTGAGTTTCAGGGCTGACCCTGGGAGTAGTCAGCCACCGTaGGTGGGTACCCATCCTCCT +
Preference number: 4 (lower is better)
Translates to: LGKECHWLRKLSFRADPGSSQPP*VGTHPP
Trigger: AGGAGGATGGGTACCCACTCACGGTGGCTGACTACT...CCCAGGGTCAGCCCTGAAACTCAGCTTCCTGAGCCAGTGACACTCCTTCCCCAA
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000028188.8
CDS-3UTR TCA 90 bp GCAGCGCTTACAGCGGCAGCTGGCAACAGAAGCCACTTTAGCACCAGCCTCGGGTTGAGGTTGGATGTGTaGCAGTTGCGGTACCACCAG +
Preference number: 4 (lower is better)
Translates to: AALTAAAGNRSHFSTSLGLRLDV*QLRYHQ
Trigger: CTGGTGGTACCGCAACTGTCACACATCCAACCTCAA...CCCGAGGCTGGTGCTAAAGTGGCTTCTGTTGCCAGCTGCCGCTGTAAGCGCTGC
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000028188.8
CDS-3UTR CCA 90 bp GGACCCAAGGCACTGTCTGCTCCCTGCATGCTGTCTAGGTGGCCACTGGCACGACCTGGTGTGTGGGTGTaGTTCAGGAAGAGAACCACA +
Preference number: 4 (lower is better)
Translates to: GPKALSAPCMLSRWPLARPGVWV*FRKRTT
Trigger: TGTGGTTCTCTTCCTGAACCACACCCACACACCAGG...TCGTGCCAGTGGCCACCTAGACAGCATGCAGGGAGCAGACAGTGCCTTGGGTCC
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000028188.8
CDS-3UTR TCA 90 bp CACCAGCCCAGGTTTGCAGGGGACCCAAGGCACTGTCTGCTCCCTGCATGCTGTTCATCTCCGAGAACTTaGGTGAATACTGCCATCCCG +
Preference number: 4 (lower is better)
Translates to: HQPRFAGDPRHCLLPACCSSPRT*VNTAIP
Trigger: CGGGATGGCAGTATTCACTCAAGTTCTCGGAGATGA...ACAGCATGCAGGGAGCAGACAGTGCCTTGGGTCCCCTGCAAACCTGGGCTGGTG
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000028188.8
CDS-3UTR CCA 90 bp CAGGGCTGGCTGGCTTCTGAGAAGATCCTAGAGTCAGTCCATGGAGGTCGGCAGCGTATGCTGCTTGTGTaGTCAGGGCGTGAATCCGCT +
Preference number: 4 (lower is better)
Translates to: QGWLASEKILESVHGGRQRMLLV*SGRESA
Trigger: AGCGGATTCACGCCCTGACCACACAAGCAGCATACG...CTGCCGACCTCCATGGACTGACTCTAGGATCTTCTCAGAAGCCAGCCAGCCCTG
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000028188.8
CDS-3UTR TCA 90 bp TGGTTGTGGGCCAAGTCCTGCAGTGACCATGGCCACAGATGGCTCGTTCTCCACCTCCGAGAACTTGAGTaGATACTGCCATCCCGTCCA +
Preference number: 4 (lower is better)
Translates to: WLWAKSCSDHGHRWLVLHLRELE*ILPSRP
Trigger: TGGACGGGATGGCAGTATTCACTCAAGTTCTCGGAG...GTGGAGAACGAGCCATCTGTGGCCATGGTCACTGCAGGACTTGGCCCACAACCA
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000028188.8
CDS-3UTR GCA 90 bp TGGCCACAAATGAGAGAGAGCTGTGGCAGCTGCACAAGGTCCTCTGATAAGAGGTTGAGCCCCAGCCAGTaGTCTCCTGTGAGCTTGCCG +
Preference number: 4 (lower is better)
Translates to: WPQMRESCGSCTRSSDKRLSPSQ*SPVSLP
Trigger: CGGCAAGCTCACAGGAGAGCACTGGCTGGGGCTCAA...CCTCTTATCAGAGGACCTTGTGCAGCTGCCACAGCTCTCTCTCATTTGTGGCCA
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000028188.8
CDS-3UTR GCA 90 bp CACATCAGAAAGCGCTTGGCACTTCTGAGCAGCGCTTACAGCGGCAGCTGGCAACACGTGAAGCTCGTATaGTGCTTGTGTGGTCAGGGC +
Preference number: 4 (lower is better)
Translates to: HIRKRLALLSSAYSGSWQHVKLV*CLCGQG
Trigger: GCCCTGACCACACAAGCAGCATACGAGCTTCACGTG...TTGCCAGCTGCCGCTGTAAGCGCTGCTCAGAAGTGCCAAGCGCTTTCTGATGTG
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000028188.8
3UTR CAA 72 bp GCCAGCTCCGCTGGTAGGAACCAAAGAGCATGTCACTaGATAGACAGGGACCTGGTTGGGGAAGGAGTGTCA +
Preference number: 4 (lower is better)
Translates to: ASSAGRNQRACH*IDRDLVGEGVS
Trigger: TGACACTCCTTCCCCAACCAGGTCCCTGTCTATCAAGTGACATGCTCTTTGGTTCCTACCAGCGGAGCTGGC
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000028188.8
3UTR CAA 72 bp CACACTTCTGGGTTCCATGAGACTTCTGCTGGCATGTaGCTCCTTAGATCACAGGGCTCAGGGCAGCTGTGG +
Preference number: 4 (lower is better)
Translates to: HTSGFHETSAGM*LLRSQGSGQLW
Trigger: CCACAGCTGCCCTGAGCCCTGTGATCTAAGGAGCAACATGCCAGCAGAAGTCTCATGGAACCCAGAAGTGTG
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000028188.8
CDS-3UTR CCA 90 bp AGCAGGTCACACAGTTCATCGGTGGCTTCAGGCTTTGGTACAAGTCTGGCAGAATCAGTGCCCGAAGGATaGAGGCCTGGATGCCTTCCA +
Preference number: 4 (lower is better)
Translates to: SRSHSSSVASGFGTSLAESVPEG*RPGCLP
Trigger: TGGAAGGCATCCAGGCCTCCATCCTTCGGGCACTGA...TTCTGCCAGACTTGTACCAAAGCCTGAAGCCACCGATGAACTGTGTGACCTGCT
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000028188.8
3UTR CAA 72 bp GACCAAGGTGCTGCCTGCCCCCAATTCTGGATGTTTTaGCCAAGCCAGGAAGAATGGGAGATGCTGCCTTAC +
Preference number: 4 (lower is better)
Translates to: DQGAACPQFWMF*PSQEEWEMLPY
Trigger: GTAAGGCAGCATCTCCCATTCTTCCTGGCTTGGCAAAAACATCCAGAATTGGGGGCAGGCAGCACCTTGGTC
54% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000028188.8
CDS-3UTR TCA 90 bp ATCTTACCATCCAGTTCTTTTAAAGCCCCTGTCAGGCTTTCAGAAGAGCATCTCCGGGAAGGGGCCCTCTaGAGGTCAGCCTTGACACGG +
Preference number: 4 (lower is better)
Translates to: ILPSSSFKAPVRLSEEHLREGAL*RSALTR
Trigger: CCGTGTCAAGGCTGACCTTCAGAGGGCCCCTTCCCG...GAGATGCTCTTCTGAAAGCCTGACAGGGGCTTTAAAAGAACTGGATGGTAAGAT
53% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 1 transcripts:
ENSMUST00000028188.8
CDS-3UTR GCA 90 bp AGCAGGTCACACAGTTCATCGGTGGCTTCAGGCTTTGGTACAAGTCTGGCAGAAAACTTGAGTGAATACTaGCATCCCGTCCAAGAGGAC +
Preference number: 4 (lower is better)
Translates to: SRSHSSSVASGFGTSLAENLSEY*HPVQED
Trigger: GTCCTCTTGGACGGGATGGCAGTATTCACTCAAGTT...TTCTGCCAGACTTGTACCAAAGCCTGAAGCCACCGATGAACTGTGTGACCTGCT
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000028188.8
CDS-3UTR CCA 90 bp TTTGGTAGAATCCACAAAGCCAACCTAGGCTTGGAAAGATTTTCGATGCTTTGCATGAGAAGGCTGAGGTaGGAGCTGTCAGCCCTCTCC +
Preference number: 4 (lower is better)
Translates to: FGRIHKANLGLERFSMLCMRRLR*ELSALS
Trigger: GGAGAGGGCTGACAGCTCCCACCTCAGCCTTCTCAT...GCAAAGCATCGAAAATCTTTCCAAGCCTAGGTTGGCTTTGTGGATTCTACCAAA
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000028188.8
CDS-3UTR CCA 90 bp ATCTTACCATCCAGTTCTTTTAAAGCCCCTGTCAGGCTTTCAGAAGAGCATCTCGACCTGGAAGCCAGCTaGGTAGTGAGTGGGGAAGAT +
Preference number: 4 (lower is better)
Translates to: ILPSSSFKAPVRLSEEHLDLEAS*VVSGED
Trigger: ATCTTCCCCACTCACTACCCAGCTGGCTTCCAGGTC...GAGATGCTCTTCTGAAAGCCTGACAGGGGCTTTAAAAGAACTGGATGGTAAGAT
49% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 1 transcripts:
ENSMUST00000028188.8
CDS-3UTR CCA 90 bp CCACAAAGCCAACCTAGGCTTGGAAAGATTTTCGATGCTTTGCAAAGTAGAGACGCACCACGCAGGTACTaGCCATTGAGGTTGGATGTG +
Preference number: 4 (lower is better)
Translates to: PQSQPRLGKIFDALQSRDAPRRY*PLRLDV
Trigger: CACATCCAACCTCAATGGCCAGTACCTGCGTGGTGC...GTCTCTACTTTGCAAAGCATCGAAAATCTTTCCAAGCCTAGGTTGGCTTTGTGG
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000028188.8
3UTR CAA 72 bp AGAGAGGGAATGGGAGGGGACTTTCCTATGTATCCCTaGTCCCATCAGAACCTTGGCTACTCTACTCATGTT +
Preference number: 4 (lower is better)
Translates to: REGMGGDFPMYP*SHQNLGYSTHV
Trigger: AACATGAGTAGAGTAGCCAAGGTTCTGATGGGACAAGGGATACATAGGAAAGTCCCCTCCCATTCCCTCTCT
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000028188.8
CDS-3UTR TCA 90 bp CCACAAAGCCAACCTAGGCTTGGAAAGATTTTCGATGCTTTGCAAAGTAGAGACCAGGACATCACTGACTaGGTTCACCAGGTGAGCCAT +
Preference number: 4 (lower is better)
Translates to: PQSQPRLGKIFDALQSRDQDITD*VHQVSH
Trigger: ATGGCTCACCTGGTGAACTCAGTCAGTGATGTCCTG...GTCTCTACTTTGCAAAGCATCGAAAATCTTTCCAAGCCTAGGTTGGCTTTGTGG
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000028188.8
CDS-3UTR TCA 90 bp TTTGGTAGAATCCACAAAGCCAACCTAGGCTTGGAAAGATTTTCGATGCTTTGCCCTCCAGGACATCACTaGCTGAGTTCACCAGGTGAG +
Preference number: 4 (lower is better)
Translates to: FGRIHKANLGLERFSMLCPPGHH*LSSPGE
Trigger: CTCACCTGGTGAACTCAGTCAGTGATGTCCTGGAGG...GCAAAGCATCGAAAATCTTTCCAAGCCTAGGTTGGCTTTGTGGATTCTACCAAA
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000028188.8
CDS-3UTR GCA 90 bp CCACAAAGCCAACCTAGGCTTGGAAAGATTTTCGATGCTTTGCAAAGTAGAGACAACCTCATGCCACTGTaGTTCAGGAGGGAGTCACCT +
Preference number: 4 (lower is better)
Translates to: PQSQPRLGKIFDALQSRDNLMPL*FRRESP
Trigger: AGGTGACTCCCTCCTGAAGCACAGTGGCATGAGGTT...GTCTCTACTTTGCAAAGCATCGAAAATCTTTCCAAGCCTAGGTTGGCTTTGTGG
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000028188.8
CDS-3UTR GCA 90 bp TTTGGTAGAATCCACAAAGCCAACCTAGGCTTGGAAAGATTTTCGATGCTTTGCTGGATGTGTGACAGTTaGGGTACCACCAGGCTCCTC +
Preference number: 4 (lower is better)
Translates to: FGRIHKANLGLERFSMLCWMCDS*GTTRLL
Trigger: GAGGAGCCTGGTGGTACCGCAACTGTCACACATCCA...GCAAAGCATCGAAAATCTTTCCAAGCCTAGGTTGGCTTTGTGGATTCTACCAAA
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000028188.8
3UTR CAA 72 bp GCTCATACATATCTCCCACCTCAGAGTCAAGTCATCTaGAGGACGGCATCTGTTGCTCATAGACTTTCTGGT +
Preference number: 4 (lower is better)
Translates to: AHTYLPPQSQVI*RTASVAHRLSG
Trigger: ACCAGAAAGTCTATGAGCAACAGATGCCGTCCTCAAGATGACTTGACTCTGAGGTGGGAGATATGTATGAGC
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000028188.8
3UTR CAA 72 bp ATGTGTGAATCTGTTGCTTCACTCGACGGAGTTTGTTaGATACCACATCAGAAAGCGCTTGGCACTTCTGAG +
Preference number: 4 (lower is better)
Translates to: MCESVASLDGVC*IPHQKALGTSE
Trigger: CTCAGAAGTGCCAAGCGCTTTCTGATGTGGTATCAAACAAACTCCGTCGAGTGAAGCAACAGATTCACACAT
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000028188.8
3UTR CAA 72 bp GAGGCCTTTGGTAGAATCCACAAAGCCAACCTAGGCTaGGAAAGATTTTCGATGCTTTGCAAAGTAGAGACA +
Preference number: 4 (lower is better)
Translates to: EAFGRIHKANLG*ERFSMLCKVET
Trigger: TGTCTCTACTTTGCAAAGCATCGAAAATCTTTCCAAGCCTAGGTTGGCTTTGTGGATTCTACCAAAGGCCTC
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000028188.8
CDS CCA 90 bp CATTCAGCCTGCAGCTCAGAGGCCCGGGTTAGCAGCCGGGGCAGCTaGTCAGCCAGTGCGTCCAGCAGCTCGGGGGCACCGTCCAGCCTC +
Preference number: 5 (lower is better)
Translates to: HSACSSEARVSSRGS*SASASSSSGAPSSL
Trigger: GAGGCTGGACGGTGCCCCCGAGCTGCTGGACGCACTGGCTGACCAGCTGCCCCGGCTGCTAACCCGGGCCTCTGAGCTGCAGGCTGAATG
70% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000028188.8
CDS GCA 90 bp CTCGGGGGCACCGTCCAGCCTCGGCTGTGCCTGGTGCTCACTCAGTaGCCGAAGGATGGAGGCCTGGATGCCTTCCAGGCGGGCGAAGCT +
Preference number: 5 (lower is better)
Translates to: LGGTVQPRLCLVLTQ*PKDGGLDAFQAGEA
Trigger: AGCTTCGCCCGCCTGGAAGGCATCCAGGCCTCCATCCTTCGGGCACTGAGTGAGCACCAGGCACAGCCGAGGCTGGACGGTGCCCCCGAG
69% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000028188.8
CDS CCA 90 bp CCCGTGCTGACGATGGGTGGGGGCGCCGTGCCTGGTGTGTGGGTGTaGTTCAGGAAGAGAACCACACCGGTGACAGCCACCGCCAGCAGC +
Preference number: 5 (lower is better)
Translates to: PVLTMGGGAVPGVWV*FRKRTTPVTATASS
Trigger: GCTGCTGGCGGTGGCTGTCACCGGTGTGGTTCTCTTCCTGAACCACACCCACACACCAGGCACGGCGCCCCCACCCATCGTCAGCACGGG
68% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000028188.8
CDS CCA 90 bp GCAGTCCCCGTGCTGACGATGGGTGGGGGCGCCGTGCCTGGTGTGTaGGTGTGGTTCAGGAAGAGAACCACACCGGTGACAGCCACCGCC +
Preference number: 5 (lower is better)
Translates to: AVPVLTMGGGAVPGV*VWFRKRTTPVTATA
Trigger: GGCGGTGGCTGTCACCGGTGTGGTTCTCTTCCTGAACCACACCCACACACCAGGCACGGCGCCCCCACCCATCGTCAGCACGGGGACTGC
68% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000028188.8
CDS CCA 90 bp GGCTCCGGCAGTCCCCGTGCTGACGATGGGTGGGGGCGCCGTGCCTaGTGTGTGGGTGTGGTTCAGGAAGAGAACCACACCGGTGACAGC +
Preference number: 5 (lower is better)
Translates to: GSGSPRADDGWGRRA*CVGVVQEENHTGDS
Trigger: GCTGTCACCGGTGTGGTTCTCTTCCTGAACCACACCCACACACCAGGCACGGCGCCCCCACCCATCGTCAGCACGGGGACTGCCGGAGCC
68% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000028188.8
CDS CCA 90 bp AGTGCGTCCAGCAGCTCGGGGGCACCGTCCAGCCTCGGCTGTGCCTaGTGCTCACTCAGTGCCCGAAGGATGGAGGCCTGGATGCCTTCC +
Preference number: 5 (lower is better)
Translates to: SASSSSGAPSSLGCA*CSLSARRMEAWMPS
Trigger: GGAAGGCATCCAGGCCTCCATCCTTCGGGCACTGAGTGAGCACCAGGCACAGCCGAGGCTGGACGGTGCCCCCGAGCTGCTGGACGCACT
68% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000028188.8
CDS CCA 90 bp GACCAGGGCACTGTTGGCTCCGGCAGTCCCCGTGCTGACGATGGGTaGGGGCGCCGTGCCTGGTGTGTGGGTGTGGTTCAGGAAGAGAAC +
Preference number: 5 (lower is better)
Translates to: DQGTVGSGSPRADDG*GRRAWCVGVVQEEN
Trigger: GTTCTCTTCCTGAACCACACCCACACACCAGGCACGGCGCCCCCACCCATCGTCAGCACGGGGACTGCCGGAGCCAACAGTGCCCTGGTC
67% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000028188.8
CDS CCA 90 bp CAGGAGGGAGTCACCTGCGGTGCCGGAGTAGTCAGCCACCGTGAGTaGGTACCCATCCTCCTCGGGGTCCACAGAGAACAAGCCCACACC +
Preference number: 5 (lower is better)
Translates to: QEGVTCGAGVVSHRE*VPILLGVHREQAHT
Trigger: GGTGTGGGCTTGTTCTCTGTGGACCCCGAGGAGGATGGGTACCCACTCACGGTGGCTGACTACTCCGGCACCGCAGGTGACTCCCTCCTG
64% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000028188.8
CDS-3UTR CAA 90 bp GCTGGTTGTGGGCCAAGTCCTGCAGTGACCATGGCCACAGATGGCTCGTTCTCCCGGTCGGTCCTCAAGTaGGGACGCGCTGCCCACGGT +
Preference number: 5 (lower is better)
Translates to: AGCGPSPAVTMATDGSFSRSVLK*GRAAHG
Trigger: ACCGTGGGCAGCGCGTCCCAACTTGAGGACCGACCG...GGAGAACGAGCCATCTGTGGCCATGGTCACTGCAGGACTTGGCCCACAACCAGC
64% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000028188.8
CDS TCA 90 bp GCTTCAGGAGGGAGTCACCTGCGGTGCCGGAGTAGTCAGCCACCGTaGGTGGGTACCCATCCTCCTCGGGGTCCACAGAGAACAAGCCCA +
Preference number: 5 (lower is better)
Translates to: ASGGSHLRCRSSQPP*VGTHPPRGPQRTSP
Trigger: TGGGCTTGTTCTCTGTGGACCCCGAGGAGGATGGGTACCCACTCACGGTGGCTGACTACTCCGGCACCGCAGGTGACTCCCTCCTGAAGC
63% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000028188.8
CDS GCA 90 bp CACCGCAAGGGACAGGAGCACCGTGCACAGGACATAACTGCAGCTTaGTCGCTGCGGTTTGTCGCGCGGTCGGTCCTCAAGTTGGGACGC +
Preference number: 5 (lower is better)
Translates to: HRKGQEHRAQDITAA*SLRFVARSVLKLGR
Trigger: GCGTCCCAACTTGAGGACCGACCGCGCGACAAACCGCAGCGAGCAAGCTGCAGTTATGTCCTGTGCACGGTGCTCCTGTCCCTTGCGGTG
63% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000028188.8
CDS TCA 90 bp GCGGTCCTCACGGACCGGCCGGATCTTCATCTCCGAGAACTTGAGTaGATACTGCCATCCCGTCCAAGAGGACCACTCGACGCCGTCTGC +
Preference number: 5 (lower is better)
Translates to: AVLTDRPDLHLRELE*ILPSRPRGPLDAVC
Trigger: GCAGACGGCGTCGAGTGGTCCTCTTGGACGGGATGGCAGTATTCACTCAAGTTCTCGGAGATGAAGATCCGGCCGGTCCGTGAGGACCGC
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000028188.8
CDS-3UTR CAA 90 bp CACCAGCCCAGGTTTGCAGGGGACCCAAGGCACTGTCTGCTCCCTGCATGCTGTTCGCTGTCCCGGTCCTaGGTGGTAAACCTCATGCCA +
Preference number: 5 (lower is better)
Translates to: HQPRFAGDPRHCLLPACCSLSRS*VVNLMP
Trigger: TGGCATGAGGTTTACCACCAAGGACCGGGACAGCGA...ACAGCATGCAGGGAGCAGACAGTGCCTTGGGTCCCCTGCAAACCTGGGCTGGTG
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000028188.8
CDS GCA 90 bp TCCCGTCCAAGAGGACCACTCGACGCCGTCTGCGTAGGAGGCGTGTaGACCACGCAGGTACTGGCCATTGAGGTTGGATGTGTGACAGTT +
Preference number: 5 (lower is better)
Translates to: SRPRGPLDAVCVGGV*TTQVLAIEVGCVTV
Trigger: AACTGTCACACATCCAACCTCAATGGCCAGTACCTGCGTGGTGCACACGCCTCCTACGCAGACGGCGTCGAGTGGTCCTCTTGGACGGGA
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000028188.8
CDS CCA 90 bp GCCTCCACCATCAGTGCGCATGTCACAGTAGACCTGGAAGCCAGCTaGGTAGTGAGTGGGGAAGATAGAGTAGACACCATCATCCTGCTG +
Preference number: 5 (lower is better)
Translates to: ASTISAHVTVDLEAS*VVSGEDRVDTIILL
Trigger: CAGCAGGATGATGGTGTCTACTCTATCTTCCCCACTCACTACCCAGCTGGCTTCCAGGTCTACTGTGACATGCGCACTGATGGTGGAGGC
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000028188.8
CDS-3UTR CAA 90 bp CACATCAGAAAGCGCTTGGCACTTCTGAGCAGCGCTTACAGCGGCAGCTGGCAAGTGAGCCATGTGACCTaGACTCTCAGAGAGAAGCTG +
Preference number: 5 (lower is better)
Translates to: HIRKRLALLSSAYSGSWQVSHVT*TLREKL
Trigger: CAGCTTCTCTCTGAGAGTCAAGGTCACATGGCTCAC...TTGCCAGCTGCCGCTGTAAGCGCTGCTCAGAAGTGCCAAGCGCTTTCTGATGTG
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000028188.8
CDS GCA 90 bp CAGAGAACAAGCCCACACCAAAACTCCCGTAGTGGGCATAGGCGGTaGCGTTGTCAAAGTCTTCTAGGTCCACGTGAAGCTCGTATGCTG +
Preference number: 5 (lower is better)
Translates to: QRTSPHQNSRSGHRR*RCQSLLGPREARML
Trigger: CAGCATACGAGCTTCACGTGGACCTAGAAGACTTTGACAACGGCACCGCCTATGCCCACTACGGGAGTTTTGGTGTGGGCTTGTTCTCTG
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000028188.8
CDS-3UTR CAA 90 bp CCACAAAGCCAACCTAGGCTTGGAAAGATTTTCGATGCTTTGCAAAGTAGAGACGTGACCAGGGCACTGTaGGCTCCGGCAGTCCCCGTG +
Preference number: 5 (lower is better)
Translates to: PQSQPRLGKIFDALQSRDVTRAL*APAVPV
Trigger: CACGGGGACTGCCGGAGCCAACAGTGCCCTGGTCAC...GTCTCTACTTTGCAAAGCATCGAAAATCTTTCCAAGCCTAGGTTGGCTTTGTGG
54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000028188.8
CDS-3UTR CAA 90 bp TTTGGTAGAATCCACAAAGCCAACCTAGGCTTGGAAAGATTTTCGATGCTTTGCAGCAGGCTGTGTCCCTaGCGCAGCCCAGCACATTCA +
Preference number: 5 (lower is better)
Translates to: FGRIHKANLGLERFSMLCSRLCP*RSPAHS
Trigger: TGAATGTGCTGGGCTGCGCAAGGGACACAGCCTGCT...GCAAAGCATCGAAAATCTTTCCAAGCCTAGGTTGGCTTTGTGGATTCTACCAAA
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000028188.8
CDS CCA 72 bp TGCAGCTCAGAGGCCCGGGTTAGCAGCCGGGGCAGCTaGTCAGCCAGTGCGTCCAGCAGCTCGGGGGCACCG +
Preference number: 6 (lower is better)
Translates to: CSSEARVSSRGS*SASASSSSGAP
Trigger: CGGTGCCCCCGAGCTGCTGGACGCACTGGCTGACCAGCTGCCCCGGCTGCTAACCCGGGCCTCTGAGCTGCA
72% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000028188.8
CDS GCA 72 bp GTCCAGCAGCTCGGGGGCACCGTCCAGCCTCGGCTGTaGCTGGTGCTCACTCAGTGCCCGAAGGATGGAGGC +
Preference number: 6 (lower is better)
Translates to: VQQLGGTVQPRL*LVLTQCPKDGG
Trigger: GCCTCCATCCTTCGGGCACTGAGTGAGCACCAGGCACAGCCGAGGCTGGACGGTGCCCCCGAGCTGCTGGAC
69% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000028188.8
CDS CCA 72 bp GCTCGCTGCGGTTTGTCGCGCGGTCGGTCCTCAAGTTaGGACGCGCTGCCCACGGTCTTCCACCGCTCGTGG +
Preference number: 6 (lower is better)
Translates to: ARCGLSRGRSSS*DALPTVFHRSW
Trigger: CCACGAGCGGTGGAAGACCGTGGGCAGCGCGTCCCAACTTGAGGACCGACCGCGCGACAAACCGCAGCGAGC
69% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000028188.8
CDS CCA 72 bp AGCAGCTCGGGGGCACCGTCCAGCCTCGGCTGTGCCTaGTGCTCACTCAGTGCCCGAAGGATGGAGGCCTGG +
Preference number: 6 (lower is better)
Translates to: SSSGAPSSLGCA*CSLSARRMEAW
Trigger: CCAGGCCTCCATCCTTCGGGCACTGAGTGAGCACCAGGCACAGCCGAGGCTGGACGGTGCCCCCGAGCTGCT
69% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000028188.8
CDS GCA 72 bp AGCTCGGGGGCACCGTCCAGCCTCGGCTGTGCCTGGTaGTCACTCAGTGCCCGAAGGATGGAGGCCTGGATG +
Preference number: 6 (lower is better)
Translates to: SSGAPSSLGCAW*SLSARRMEAWM
Trigger: CATCCAGGCCTCCATCCTTCGGGCACTGAGTGAGCACCAGGCACAGCCGAGGCTGGACGGTGCCCCCGAGCT
68% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000028188.8
CDS CCA 72 bp ACTGTTGGCTCCGGCAGTCCCCGTGCTGACGATGGGTaGGGGCGCCGTGCCTGGTGTGTGGGTGTGGTTCAG +
Preference number: 6 (lower is better)
Translates to: TVGSGSPRADDG*GRRAWCVGVVQ
Trigger: CTGAACCACACCCACACACCAGGCACGGCGCCCCCACCCATCGTCAGCACGGGGACTGCCGGAGCCAACAGT
68% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000028188.8
CDS CAA 72 bp TGCTCGCTGCGGTTTGTCGCGCGGTCGGTCCTCAAGTaGGGACGCGCTGCCCACGGTCTTCCACCGCTCGTG +
Preference number: 6 (lower is better)
Translates to: CSLRFVARSVLK*GRAAHGLPPLV
Trigger: CACGAGCGGTGGAAGACCGTGGGCAGCGCGTCCCAACTTGAGGACCGACCGCGCGACAAACCGCAGCGAGCA
68% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000028188.8
CDS GCA 72 bp GCCTTGACACGGGGCCGGCCTAGGCCCCGCTCCCTCTaGAGAGCCTCCAGGACATCACTGACTGAGTTCACC +
Preference number: 6 (lower is better)
Translates to: ALTRGRPRPRSL*RASRTSLTEFT
Trigger: GGTGAACTCAGTCAGTGATGTCCTGGAGGCTCTGCAGAGGGAGCGGGGCCTAGGCCGGCCCCGTGTCAAGGC
67% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000028188.8
CDS GCA 72 bp CTGCCATCCCGTCCAAGAGGACCACTCGACGCCGTCTaGGTAGGAGGCGTGTGCACCACGCAGGTACTGGCC +
Preference number: 6 (lower is better)
Translates to: LPSRPRGPLDAV*VGGVCTTQVLA
Trigger: GGCCAGTACCTGCGTGGTGCACACGCCTCCTACGCAGACGGCGTCGAGTGGTCCTCTTGGACGGGATGGCAG
67% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000028188.8
CDS CAA 72 bp GAGCTGTCAGCCCTCTCCACAGTGACCAGGGCACTGTaGGCTCCGGCAGTCCCCGTGCTGACGATGGGTGGG +
Preference number: 6 (lower is better)
Translates to: ELSALSTVTRAL*APAVPVLTMGG
Trigger: CCCACCCATCGTCAGCACGGGGACTGCCGGAGCCAACAGTGCCCTGGTCACTGTGGAGAGGGCTGACAGCTC
67% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000028188.8
CDS CAA 72 bp ATCCGCTTGAGCCCCAGCCAGTGCTCTCCTGTGAGCTaGCCGAAGCCCTCCCGGTACGCCTCCCAACCTCGG +
Preference number: 6 (lower is better)
Translates to: IRLSPSQCSPVS*PKPSRYASQPR
Trigger: CCGAGGTTGGGAGGCGTACCGGGAGGGCTTCGGCAAGCTCACAGGAGAGCACTGGCTGGGGCTCAAGCGGAT
67% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000028188.8
CDS TCA 72 bp GGGAGTCACCTGCGGTGCCGGAGTAGTCAGCCACCGTaGGTGGGTACCCATCCTCCTCGGGGTCCACAGAGA +
Preference number: 6 (lower is better)
Translates to: GSHLRCRSSQPP*VGTHPPRGPQR
Trigger: TCTCTGTGGACCCCGAGGAGGATGGGTACCCACTCACGGTGGCTGACTACTCCGGCACCGCAGGTGACTCCC
65% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000028188.8
CDS CCA 72 bp ACGATGGGTGGGGGCGCCGTGCCTGGTGTGTGGGTGTaGTTCAGGAAGAGAACCACACCGGTGACAGCCACC +
Preference number: 6 (lower is better)
Translates to: TMGGGAVPGVWV*FRKRTTPVTAT
Trigger: GGTGGCTGTCACCGGTGTGGTTCTCTTCCTGAACCACACCCACACACCAGGCACGGCGCCCCCACCCATCGT
65% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000028188.8
CDS CAA 90 bp GCACCGCAAGGGACAGGAGCACCGTGCACAGGACATAACTGCAGCTaGCTCGCTGCGGTTTGTCGCGCGGTCGGTCCTCAAGTTGGGACG +
Preference number: 6 (lower is better)
Translates to: APQGTGAPCTGHNCS*LAAVCRAVGPQVGT
Trigger: CGTCCCAACTTGAGGACCGACCGCGCGACAAACCGCAGCGAGCAAGCTGCAGTTATGTCCTGTGCACGGTGCTCCTGTCCCTTGCGGTGC
63% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000028188.8
CDS TCA 72 bp GTGTGTGGGTGTGGTTCAGGAAGAGAACCACACCGGTaGCAGCCACCGCCAGCAGCACCGCAAGGGACAGGA +
Preference number: 6 (lower is better)
Translates to: VCGCGSGREPHR*QPPPAAPQGTG
Trigger: TCCTGTCCCTTGCGGTGCTGCTGGCGGTGGCTGTCACCGGTGTGGTTCTCTTCCTGAACCACACCCACACAC
62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000028188.8
CDS GCA 72 bp GGACAGGAGCACCGTGCACAGGACATAACTGCAGCTTaGTCGCTGCGGTTTGTCGCGCGGTCGGTCCTCAAG +
Preference number: 6 (lower is better)
Translates to: GQEHRAQDITAA*SLRFVARSVLK
Trigger: CTTGAGGACCGACCGCGCGACAAACCGCAGCGAGCAAGCTGCAGTTATGTCCTGTGCACGGTGCTCCTGTCC
62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000028188.8
CDS CCA 72 bp GTCACCTGCGGTGCCGGAGTAGTCAGCCACCGTGAGTaGGTACCCATCCTCCTCGGGGTCCACAGAGAACAA +
Preference number: 6 (lower is better)
Translates to: VTCGAGVVSHRE*VPILLGVHREQ
Trigger: TTGTTCTCTGTGGACCCCGAGGAGGATGGGTACCCACTCACGGTGGCTGACTACTCCGGCACCGCAGGTGAC
62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000028188.8
CDS CAA 72 bp GGGACAGGAGCACCGTGCACAGGACATAACTGCAGCTaGCTCGCTGCGGTTTGTCGCGCGGTCGGTCCTCAA +
Preference number: 6 (lower is better)
Translates to: GTGAPCTGHNCS*LAAVCRAVGPQ
Trigger: TTGAGGACCGACCGCGCGACAAACCGCAGCGAGCAAGCTGCAGTTATGTCCTGTGCACGGTGCTCCTGTCCC
62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000028188.8
CDS GCA 72 bp AGAGGACCACTCGACGCCGTCTGCGTAGGAGGCGTGTaGACCACGCAGGTACTGGCCATTGAGGTTGGATGT +
Preference number: 6 (lower is better)
Translates to: RGPLDAVCVGGV*TTQVLAIEVGC
Trigger: ACATCCAACCTCAATGGCCAGTACCTGCGTGGTGCACACGCCTCCTACGCAGACGGCGTCGAGTGGTCCTCT
61% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000028188.8
CDS TCA 72 bp CGTAGGAGGCGTGTGCACCACGCAGGTACTGGCCATTaGGGTTGGATGTGTGACAGTTGCGGTACCACCAGG +
Preference number: 6 (lower is better)
Translates to: RRRRVHHAGTGH*GWMCDSCGTTR
Trigger: CCTGGTGGTACCGCAACTGTCACACATCCAACCTCAATGGCCAGTACCTGCGTGGTGCACACGCCTCCTACG
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000028188.8
CDS CAA 72 bp GCACAGTTGTTCTCCGAGTGGTCGCTGTCCCGGTCCTaGGTGGTAAACCTCATGCCACTGTGCTTCAGGAGG +
Preference number: 6 (lower is better)
Translates to: AQLFSEWSLSRS*VVNLMPLCFRR
Trigger: CCTCCTGAAGCACAGTGGCATGAGGTTTACCACCAAGGACCGGGACAGCGACCACTCGGAGAACAACTGTGC
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000028188.8
CDS TCA 72 bp ACGGACCGGCCGGATCTTCATCTCCGAGAACTTGAGTaGATACTGCCATCCCGTCCAAGAGGACCACTCGAC +
Preference number: 6 (lower is better)
Translates to: TDRPDLHLRELE*ILPSRPRGPLD
Trigger: GTCGAGTGGTCCTCTTGGACGGGATGGCAGTATTCACTCAAGTTCTCGGAGATGAAGATCCGGCCGGTCCGT
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000028188.8
CDS TCA 72 bp CCTCACGGACCGGCCGGATCTTCATCTCCGAGAACTTaGGTGAATACTGCCATCCCGTCCAAGAGGACCACT +
Preference number: 6 (lower is better)
Translates to: PHGPAGSSSPRT*VNTAIPSKRTT
Trigger: AGTGGTCCTCTTGGACGGGATGGCAGTATTCACTCAAGTTCTCGGAGATGAAGATCCGGCCGGTCCGTGAGG
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000028188.8
CDS CAA 72 bp TCCTCACGGACCGGCCGGATCTTCATCTCCGAGAACTaGAGTGAATACTGCCATCCCGTCCAAGAGGACCAC +
Preference number: 6 (lower is better)
Translates to: SSRTGRIFISEN*SEYCHPVQEDH
Trigger: GTGGTCCTCTTGGACGGGATGGCAGTATTCACTCAAGTTCTCGGAGATGAAGATCCGGCCGGTCCGTGAGGA
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000028188.8
CDS GCA 72 bp AGCCCACACCAAAACTCCCGTAGTGGGCATAGGCGGTaGCGTTGTCAAAGTCTTCTAGGTCCACGTGAAGCT +
Preference number: 6 (lower is better)
Translates to: SPHQNSRSGHRR*RCQSLLGPREA
Trigger: AGCTTCACGTGGACCTAGAAGACTTTGACAACGGCACCGCCTATGCCCACTACGGGAGTTTTGGTGTGGGCT
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000028188.8
CDS CCA 72 bp ATCAGTGCGCATGTCACAGTAGACCTGGAAGCCAGCTaGGTAGTGAGTGGGGAAGATAGAGTAGACACCATC +
Preference number: 6 (lower is better)
Translates to: ISAHVTVDLEAS*VVSGEDRVDTI
Trigger: GATGGTGTCTACTCTATCTTCCCCACTCACTACCCAGCTGGCTTCCAGGTCTACTGTGACATGCGCACTGAT
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000028188.8