Pregenerated sensors for FHL5 (Mus musculus)
Ensembl gene IDs: ENSMUSG00000028259Ensembl transcript IDs: ENSMUST00000029922.14, ENSMUST00000108204.2
Found 46 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| CDS-3UTR GCA 90 bp | CCAGATTTAGTGAGAGCAAGGGCAAAGCAGATTTCAGATGGTGAAAGACTTGTCCCCCGGAGCCACACTTaGGGCATAAGATTTCCATGT | + |
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Preference number: 4 (lower is better) Translates to: PDLVRARAKQISDGERLVPRSHT*GIRFPC Trigger: ACATGGAAATCTTATGCCGCAAGTGTGGCTCCGGGG...GACAAGTCTTTCACCATCTGAAATCTGCTTTGCCCTTGCTCTCACTAAATCTGG 48% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENSMUST00000029922.14 ENSMUST00000108204.2 |
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| CDS-3UTR TCA 90 bp | CCAGATTTAGTGAGAGCAAGGGCAAAGCAGATTTCAGATGGTGAAAGACTTGTCGGCATTTGTTGCACCTaGAGCATCCTTCATGCCAGT | + |
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Preference number: 4 (lower is better) Translates to: PDLVRARAKQISDGERLVGICCT*SILHAS Trigger: ACTGGCATGAAGGATGCTTCAGGTGCAACAAATGCC...GACAAGTCTTTCACCATCTGAAATCTGCTTTGCCCTTGCTCTCACTAAATCTGG 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000029922.14 ENSMUST00000108204.2 |
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| CDS-3UTR TCA 90 bp | GTTCCAGATTTAGTGAGAGCAAGGGCAAAGCAGATTTCAGATGGTGAAAGACTTTCCGAGAACCTGGCATaGTGGTTCTCTTGCAGTGGA | + |
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Preference number: 4 (lower is better) Translates to: VPDLVRARAKQISDGERLSENLA*WFSCSG Trigger: TCCACTGCAAGAGAACCATCATGCCAGGTTCTCGGA...AAGTCTTTCACCATCTGAAATCTGCTTTGCCCTTGCTCTCACTAAATCTGGAAC 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000029922.14 ENSMUST00000108204.2 |
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| CDS-3UTR GCA 90 bp | CCAGATTTAGTGAGAGCAAGGGCAAAGCAGATTTCAGATGGTGAAAGACTTGTCTGGAATAGCAGTCTGTaGACAGCAGGCGATCATCCT | + |
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Preference number: 4 (lower is better) Translates to: PDLVRARAKQISDGERLVWNSSL*TAGDHP Trigger: AGGATGATCGCCTGCTGTGCACAGACTGCTATTCCA...GACAAGTCTTTCACCATCTGAAATCTGCTTTGCCCTTGCTCTCACTAAATCTGG 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000029922.14 ENSMUST00000108204.2 |
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| CDS-3UTR GCA 90 bp | CCAGATTTAGTGAGAGCAAGGGCAAAGCAGATTTCAGATGGTGAAAGACTTGTCATTGGCTGTCGGCAGTaGTCACACACAAAGCAGGTT | + |
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Preference number: 4 (lower is better) Translates to: PDLVRARAKQISDGERLVIGCRQ*SHTKQV Trigger: AACCTGCTTTGTGTGTGAGCACTGCCGACAGCCAAT...GACAAGTCTTTCACCATCTGAAATCTGCTTTGCCCTTGCTCTCACTAAATCTGG 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000029922.14 ENSMUST00000108204.2 |
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| CDS-3UTR CCA 90 bp | CCAGATTTAGTGAGAGCAAGGGCAAAGCAGATTTCAGATGGTGAAAGACTTGTCGCAGGCGATCATCCTTaGCAACGAAAGGCTTTTCCA | + |
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Preference number: 4 (lower is better) Translates to: PDLVRARAKQISDGERLVAGDHP*QRKAFP Trigger: TGGAAAAGCCTTTCGTTGCCAAGGATGATCGCCTGC...GACAAGTCTTTCACCATCTGAAATCTGCTTTGCCCTTGCTCTCACTAAATCTGG 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000029922.14 ENSMUST00000108204.2 |
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| CDS-3UTR CCA 90 bp | CCAGATTTAGTGAGAGCAAGGGCAAAGCAGATTTCAGATGGTGAAAGACTTGTCTGGAGATCAAAGGCTTaGTTCCTATTGGCTGTCGGC | + |
|
Preference number: 4 (lower is better) Translates to: PDLVRARAKQISDGERLVWRSKA*FLLAVG Trigger: GCCGACAGCCAATAGGAACCAAGCCTTTGATCTCCA...GACAAGTCTTTCACCATCTGAAATCTGCTTTGCCCTTGCTCTCACTAAATCTGG 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000029922.14 ENSMUST00000108204.2 |
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| CDS-3UTR TCA 90 bp | GTTCCAGATTTAGTGAGAGCAAGGGCAAAGCAGATTTCAGATGGTGAAAGACTTGGCATTTGTTGCACCTaGAGCATCCTTCATGCCAGT | + |
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Preference number: 4 (lower is better) Translates to: VPDLVRARAKQISDGERLGICCT*SILHAS Trigger: ACTGGCATGAAGGATGCTTCAGGTGCAACAAATGCC...AAGTCTTTCACCATCTGAAATCTGCTTTGCCCTTGCTCTCACTAAATCTGGAAC 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000029922.14 ENSMUST00000108204.2 |
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| CDS-3UTR GCA 90 bp | CCAGATTTAGTGAGAGCAAGGGCAAAGCAGATTTCAGATGGTGAAAGACTTGTCCATAAAGCTCTTTCCTaGAGCCGCTGCACAGAAAAC | + |
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Preference number: 4 (lower is better) Translates to: PDLVRARAKQISDGERLVHKALS*SRCTEN Trigger: GTTTTCTGTGCAGCGGCTGCAGGAAAGAGCTTTATG...GACAAGTCTTTCACCATCTGAAATCTGCTTTGCCCTTGCTCTCACTAAATCTGG 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000029922.14 ENSMUST00000108204.2 |
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| CDS-3UTR CCA 90 bp | CCAGATTTAGTGAGAGCAAGGGCAAAGCAGATTTCAGATGGTGAAAGACTTGTCTGCAGTGGAAGCACTTaGAGGAACACTCGTTGGAAT | + |
|
Preference number: 4 (lower is better) Translates to: PDLVRARAKQISDGERLVCSGST*RNTRWN Trigger: ATTCCAACGAGTGTTCCTCCAAGTGCTTCCACTGCA...GACAAGTCTTTCACCATCTGAAATCTGCTTTGCCCTTGCTCTCACTAAATCTGG 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000029922.14 ENSMUST00000108204.2 |
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| CDS-3UTR GCA 90 bp | CCAGATTTAGTGAGAGCAAGGGCAAAGCAGATTTCAGATGGTGAAAGACTTGTCCTTTCCTGCAGCCGCTaGACAGAAAACACTCTTTAT | + |
|
Preference number: 4 (lower is better) Translates to: PDLVRARAKQISDGERLVLSCSR*TENTLY Trigger: ATAAAGAGTGTTTTCTGTGCAGCGGCTGCAGGAAAG...GACAAGTCTTTCACCATCTGAAATCTGCTTTGCCCTTGCTCTCACTAAATCTGG 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000029922.14 ENSMUST00000108204.2 |
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| CDS-3UTR GCA 90 bp | GTTCCAGATTTAGTGAGAGCAAGGGCAAAGCAGATTTCAGATGGTGAAAGACTTCATAAAGCTCTTTCCTaGAGCCGCTGCACAGAAAAC | + |
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Preference number: 4 (lower is better) Translates to: VPDLVRARAKQISDGERLHKALS*SRCTEN Trigger: GTTTTCTGTGCAGCGGCTGCAGGAAAGAGCTTTATG...AAGTCTTTCACCATCTGAAATCTGCTTTGCCCTTGCTCTCACTAAATCTGGAAC 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000029922.14 ENSMUST00000108204.2 |
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| CDS-3UTR CCA 90 bp | GTTCCAGATTTAGTGAGAGCAAGGGCAAAGCAGATTTCAGATGGTGAAAGACTTTGCAGTGGAAGCACTTaGAGGAACACTCGTTGGAAT | + |
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Preference number: 4 (lower is better) Translates to: VPDLVRARAKQISDGERLCSGST*RNTRWN Trigger: ATTCCAACGAGTGTTCCTCCAAGTGCTTCCACTGCA...AAGTCTTTCACCATCTGAAATCTGCTTTGCCCTTGCTCTCACTAAATCTGGAAC 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000029922.14 ENSMUST00000108204.2 |
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| CDS-3UTR CCA 90 bp | GTTCCAGATTTAGTGAGAGCAAGGGCAAAGCAGATTTCAGATGGTGAAAGACTTATGGTTCTCTTGCAGTaGAAGCACTTGGAGGAACAC | + |
|
Preference number: 4 (lower is better) Translates to: VPDLVRARAKQISDGERLMVLLQ*KHLEEH Trigger: GTGTTCCTCCAAGTGCTTCCACTGCAAGAGAACCAT...AAGTCTTTCACCATCTGAAATCTGCTTTGCCCTTGCTCTCACTAAATCTGGAAC 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000029922.14 ENSMUST00000108204.2 |
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| CDS-3UTR TCA 90 bp | GTTCCAGATTTAGTGAGAGCAAGGGCAAAGCAGATTTCAGATGGTGAAAGACTTTTTTCCACCAAAGAGTaGTGGCATTTGTTGCACCTG | + |
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Preference number: 4 (lower is better) Translates to: VPDLVRARAKQISDGERLFSTKE*WHLLHL Trigger: CAGGTGCAACAAATGCCATCACTCTTTGGTGGAAAA...AAGTCTTTCACCATCTGAAATCTGCTTTGCCCTTGCTCTCACTAAATCTGGAAC 43% GC, longest homopolymer 6 nt, total homopolymer stretches 6 nt. Matches the following 2 transcripts: ENSMUST00000029922.14 ENSMUST00000108204.2 |
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| CDS-3UTR CCA 90 bp | GTTCCAGATTTAGTGAGAGCAAGGGCAAAGCAGATTTCAGATGGTGAAAGACTTCATTTTCCGAGAACCTaGCATGATGGTTCTCTTGCA | + |
|
Preference number: 4 (lower is better) Translates to: VPDLVRARAKQISDGERLHFPRT*HDGSLA Trigger: TGCAAGAGAACCATCATGCCAGGTTCTCGGAAAATG...AAGTCTTTCACCATCTGAAATCTGCTTTGCCCTTGCTCTCACTAAATCTGGAAC 43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000029922.14 ENSMUST00000108204.2 |
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| CDS-3UTR CCA 90 bp | CCAGATTTAGTGAGAGCAAGGGCAAAGCAGATTTCAGATGGTGAAAGACTTGTCAATTGCCACTCTCTTTaGAGATCAAAGGCTTGGTTC | + |
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Preference number: 4 (lower is better) Translates to: PDLVRARAKQISDGERLVNCHSL*RSKAWF Trigger: GAACCAAGCCTTTGATCTCCAAAGAGAGTGGCAATT...GACAAGTCTTTCACCATCTGAAATCTGCTTTGCCCTTGCTCTCACTAAATCTGG 43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000029922.14 ENSMUST00000108204.2 |
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| CDS-3UTR TCA 90 bp | GTTCCAGATTTAGTGAGAGCAAGGGCAAAGCAGATTTCAGATGGTGAAAGACTTTCTTTATGCCATATCTaGTCACGGAAGGTTATCCCA | + |
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Preference number: 4 (lower is better) Translates to: VPDLVRARAKQISDGERLSLCHI*SRKVIP Trigger: TGGGATAACCTTCCGTGATCAGATATGGCATAAAGA...AAGTCTTTCACCATCTGAAATCTGCTTTGCCCTTGCTCTCACTAAATCTGGAAC 42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000029922.14 ENSMUST00000108204.2 |
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| CDS-3UTR GCA 90 bp | CCAGATTTAGTGAGAGCAAGGGCAAAGCAGATTTCAGATGGTGAAAGACTTGTCGATCGTAGCAGGAGATaGAGTATAGATTATCATCCT | + |
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Preference number: 4 (lower is better) Translates to: PDLVRARAKQISDGERLVDRSRR*SIDYHP Trigger: AGGATGATAATCTATACTGCATCTCCTGCTACGATC...GACAAGTCTTTCACCATCTGAAATCTGCTTTGCCCTTGCTCTCACTAAATCTGG 42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000029922.14 ENSMUST00000108204.2 |
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| CDS-3UTR CCA 90 bp | CCAGATTTAGTGAGAGCAAGGGCAAAGCAGATTTCAGATGGTGAAAGACTTGTCAAGATTTCCATGTTATaGGTCAAGAATCCTTCACCC | + |
|
Preference number: 4 (lower is better) Translates to: PDLVRARAKQISDGERLVKISML*VKNPSP Trigger: GGGTGAAGGATTCTTGACCCATAACATGGAAATCTT...GACAAGTCTTTCACCATCTGAAATCTGCTTTGCCCTTGCTCTCACTAAATCTGG 42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000029922.14 ENSMUST00000108204.2 |
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| CDS-3UTR GCA 90 bp | GTTCCAGATTTAGTGAGAGCAAGGGCAAAGCAGATTTCAGATGGTGAAAGACTTCCTTCTTACAGAAGTTaGAGTAATGAGCAAACTCCT | + |
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Preference number: 4 (lower is better) Translates to: VPDLVRARAKQISDGERLPSYRS*SNEQTP Trigger: AGGAGTTTGCTCATTACTGCAACTTCTGTAAGAAGG...AAGTCTTTCACCATCTGAAATCTGCTTTGCCCTTGCTCTCACTAAATCTGGAAC 41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000029922.14 ENSMUST00000108204.2 |
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| CDS-3UTR CCA 90 bp | GTTCCAGATTTAGTGAGAGCAAGGGCAAAGCAGATTTCAGATGGTGAAAGACTTAAGATTTCCATGTTATaGGTCAAGAATCCTTCACCC | + |
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Preference number: 4 (lower is better) Translates to: VPDLVRARAKQISDGERLKISML*VKNPSP Trigger: GGGTGAAGGATTCTTGACCCATAACATGGAAATCTT...AAGTCTTTCACCATCTGAAATCTGCTTTGCCCTTGCTCTCACTAAATCTGGAAC 41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000029922.14 ENSMUST00000108204.2 |
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| CDS TCA 90 bp | GAGCACTTTCCGCAGTTGAAGCACTCACTGTGCCACTGGCGGTCTTaGAAGCAGATGAACTTGGCACCTCTGAGGCCAGTGATGGGTTTG | + |
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Preference number: 5 (lower is better) Translates to: EHFPQLKHSLCHWRS*KQMNLAPLRPVMGL Trigger: CAAACCCATCACTGGCCTCAGAGGTGCCAAGTTCATCTGCTTTCAAGACCGCCAGTGGCACAGTGAGTGCTTCAACTGCGGAAAGTGCTC 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000029922.14 ENSMUST00000108204.2 |
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| CDS CCA 90 bp | GTGTCTGCCCCGGAGCCACACTTGCGGCATAAGATTTCCATGTTATaGGTCAAGAATCCTTCACCCACCAAGGAGACCGAGCACTTTCCG | + |
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Preference number: 5 (lower is better) Translates to: VSAPEPHLRHKISML*VKNPSPTKETEHFP Trigger: CGGAAAGTGCTCGGTCTCCTTGGTGGGTGAAGGATTCTTGACCCATAACATGGAAATCTTATGCCGCAAGTGTGGCTCCGGGGCAGACAC 54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000029922.14 ENSMUST00000108204.2 |
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| CDS-3UTR CAA 90 bp | CCAGATTTAGTGAGAGCAAGGGCAAAGCAGATTTCAGATGGTGAAAGACTTGTCAAGGCTTGGTTCCTATaGGCTGTCGGCAGTGCTCAC | + |
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Preference number: 5 (lower is better) Translates to: PDLVRARAKQISDGERLVKAWFL*AVGSAH Trigger: GTGAGCACTGCCGACAGCCAATAGGAACCAAGCCTT...GACAAGTCTTTCACCATCTGAAATCTGCTTTGCCCTTGCTCTCACTAAATCTGG 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000029922.14 ENSMUST00000108204.2 |
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| CDS-3UTR CAA 90 bp | CCAGATTTAGTGAGAGCAAGGGCAAAGCAGATTTCAGATGGTGAAAGACTTGTCAGGCCAGTGATGGGTTaGGTGCAGGCTGCACACTTT | + |
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Preference number: 5 (lower is better) Translates to: PDLVRARAKQISDGERLVRPVMG*VQAAHF Trigger: AAAGTGTGCAGCCTGCACCAAACCCATCACTGGCCT...GACAAGTCTTTCACCATCTGAAATCTGCTTTGCCCTTGCTCTCACTAAATCTGG 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000029922.14 ENSMUST00000108204.2 |
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| CDS-3UTR CAA 90 bp | CCAGATTTAGTGAGAGCAAGGGCAAAGCAGATTTCAGATGGTGAAAGACTTGTCGGCATGATGGTTCTCTaGCAGTGGAAGCACTTGGAG | + |
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Preference number: 5 (lower is better) Translates to: PDLVRARAKQISDGERLVGMMVL*QWKHLE Trigger: CTCCAAGTGCTTCCACTGCAAGAGAACCATCATGCC...GACAAGTCTTTCACCATCTGAAATCTGCTTTGCCCTTGCTCTCACTAAATCTGG 48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000029922.14 ENSMUST00000108204.2 |
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| CDS-3UTR CAA 90 bp | GTTCCAGATTTAGTGAGAGCAAGGGCAAAGCAGATTTCAGATGGTGAAAGACTTAAGGCTTGGTTCCTATaGGCTGTCGGCAGTGCTCAC | + |
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Preference number: 5 (lower is better) Translates to: VPDLVRARAKQISDGERLKAWFL*AVGSAH Trigger: GTGAGCACTGCCGACAGCCAATAGGAACCAAGCCTT...AAGTCTTTCACCATCTGAAATCTGCTTTGCCCTTGCTCTCACTAAATCTGGAAC 48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000029922.14 ENSMUST00000108204.2 |
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| CDS-3UTR CAA 90 bp | GTTCCAGATTTAGTGAGAGCAAGGGCAAAGCAGATTTCAGATGGTGAAAGACTTAGGCCAGTGATGGGTTaGGTGCAGGCTGCACACTTT | + |
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Preference number: 5 (lower is better) Translates to: VPDLVRARAKQISDGERLRPVMG*VQAAHF Trigger: AAAGTGTGCAGCCTGCACCAAACCCATCACTGGCCT...AAGTCTTTCACCATCTGAAATCTGCTTTGCCCTTGCTCTCACTAAATCTGGAAC 48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000029922.14 ENSMUST00000108204.2 |
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| CDS CCA 90 bp | AACATGGCACACAATAATTGCCACTCTCTTTGGAGATCAAAGGCTTaGTTCCTATTGGCTGTCGGCAGTGCTCACACACAAAGCAGGTTT | + |
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Preference number: 5 (lower is better) Translates to: NMAHNNCHSLWRSKA*FLLAVGSAHTQSRF Trigger: AAACCTGCTTTGTGTGTGAGCACTGCCGACAGCCAATAGGAACCAAGCCTTTGATCTCCAAAGAGAGTGGCAATTATTGTGTGCCATGTT 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000029922.14 ENSMUST00000108204.2 |
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| CDS-3UTR CAA 90 bp | GTTCCAGATTTAGTGAGAGCAAGGGCAAAGCAGATTTCAGATGGTGAAAGACTTAGCAGGCGATCATCCTaGGCAACGAAAGGCTTTTCC | + |
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Preference number: 5 (lower is better) Translates to: VPDLVRARAKQISDGERLSRRSS*ATKGFS Trigger: GGAAAAGCCTTTCGTTGCCAAGGATGATCGCCTGCT...AAGTCTTTCACCATCTGAAATCTGCTTTGCCCTTGCTCTCACTAAATCTGGAAC 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000029922.14 ENSMUST00000108204.2 |
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| CDS-3UTR CAA 90 bp | CCAGATTTAGTGAGAGCAAGGGCAAAGCAGATTTCAGATGGTGAAAGACTTGTCTTGCAGTGGAAGCACTaGGAGGAACACTCGTTGGAA | + |
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Preference number: 5 (lower is better) Translates to: PDLVRARAKQISDGERLVLQWKH*EEHSLE Trigger: TTCCAACGAGTGTTCCTCCAAGTGCTTCCACTGCAA...GACAAGTCTTTCACCATCTGAAATCTGCTTTGCCCTTGCTCTCACTAAATCTGG 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000029922.14 ENSMUST00000108204.2 |
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| CDS-3UTR CAA 90 bp | GTTCCAGATTTAGTGAGAGCAAGGGCAAAGCAGATTTCAGATGGTGAAAGACTTGGCATGATGGTTCTCTaGCAGTGGAAGCACTTGGAG | + |
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Preference number: 5 (lower is better) Translates to: VPDLVRARAKQISDGERLGMMVL*QWKHLE Trigger: CTCCAAGTGCTTCCACTGCAAGAGAACCATCATGCC...AAGTCTTTCACCATCTGAAATCTGCTTTGCCCTTGCTCTCACTAAATCTGGAAC 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000029922.14 ENSMUST00000108204.2 |
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| CDS-3UTR CAA 90 bp | CCAGATTTAGTGAGAGCAAGGGCAAAGCAGATTTCAGATGGTGAAAGACTTGTCTTGGAGATCAAAGGCTaGGTTCCTATTGGCTGTCGG | + |
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Preference number: 5 (lower is better) Translates to: PDLVRARAKQISDGERLVLEIKG*VPIGCR Trigger: CCGACAGCCAATAGGAACCAAGCCTTTGATCTCCAA...GACAAGTCTTTCACCATCTGAAATCTGCTTTGCCCTTGCTCTCACTAAATCTGG 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000029922.14 ENSMUST00000108204.2 |
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| CDS TCA 90 bp | CAACGAAAGGCTTTTCCACCAAAGAGTGATGGCATTTGTTGCACCTaGAGCATCCTTCATGCCAGTGACGGTTTTTGTAGCAAAGATCCT | + |
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Preference number: 5 (lower is better) Translates to: QRKAFPPKSDGICCT*SILHASDGFCSKDP Trigger: AGGATCTTTGCTACAAAAACCGTCACTGGCATGAAGGATGCTTCAGGTGCAACAAATGCCATCACTCTTTGGTGGAAAAGCCTTTCGTTG 46% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENSMUST00000029922.14 ENSMUST00000108204.2 |
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| CDS-3UTR CAA 90 bp | GTTCCAGATTTAGTGAGAGCAAGGGCAAAGCAGATTTCAGATGGTGAAAGACTTTTGCAGTGGAAGCACTaGGAGGAACACTCGTTGGAA | + |
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Preference number: 5 (lower is better) Translates to: VPDLVRARAKQISDGERLLQWKH*EEHSLE Trigger: TTCCAACGAGTGTTCCTCCAAGTGCTTCCACTGCAA...AAGTCTTTCACCATCTGAAATCTGCTTTGCCCTTGCTCTCACTAAATCTGGAAC 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000029922.14 ENSMUST00000108204.2 |
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| CDS-3UTR CAA 90 bp | GTTCCAGATTTAGTGAGAGCAAGGGCAAAGCAGATTTCAGATGGTGAAAGACTTTTGGAGATCAAAGGCTaGGTTCCTATTGGCTGTCGG | + |
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Preference number: 5 (lower is better) Translates to: VPDLVRARAKQISDGERLLEIKG*VPIGCR Trigger: CCGACAGCCAATAGGAACCAAGCCTTTGATCTCCAA...AAGTCTTTCACCATCTGAAATCTGCTTTGCCCTTGCTCTCACTAAATCTGGAAC 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000029922.14 ENSMUST00000108204.2 |
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| CDS TCA 90 bp | ATAAAGATGGTTGTAGCAATCCAGGCAGAATGGGAAATCATCCTTTaGCATAAATGCCTCCTCATAAAGCTCTTTCCTGCAGCCGCTGCA | + |
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Preference number: 5 (lower is better) Translates to: IKMVVAIQAEWEIIL*HKCLLIKLFPAAAA Trigger: TGCAGCGGCTGCAGGAAAGAGCTTTATGAGGAGGCATTTATGTCAAAGGATGATTTCCCATTCTGCCTGGATTGCTACAACCATCTTTAT 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000029922.14 ENSMUST00000108204.2 |
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| CDS TCA 90 bp | AAAAGATACGATCGTAGCAGGAGATGCAGTATAGATTATCATCCTTaGGTACATATTTCTTCCCAATCAGGGATGAAGTGCAGTATTGAC | + |
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Preference number: 5 (lower is better) Translates to: KRYDRSRRCSIDYHP*VHISSQSGMKCSID Trigger: GTCAATACTGCACTTCATCCCTGATTGGGAAGAAATATGTACTCAAGGATGATAATCTATACTGCATCTCCTGCTACGATCGTATCTTTT 39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000029922.14 ENSMUST00000108204.2 |
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| CDS TCA 72 bp | CCGCAGTTGAAGCACTCACTGTGCCACTGGCGGTCTTaGAAGCAGATGAACTTGGCACCTCTGAGGCCAGTG | + |
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Preference number: 6 (lower is better) Translates to: PQLKHSLCHWRS*KQMNLAPLRPV Trigger: CACTGGCCTCAGAGGTGCCAAGTTCATCTGCTTTCAAGACCGCCAGTGGCACAGTGAGTGCTTCAACTGCGG 57% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000029922.14 ENSMUST00000108204.2 |
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| CDS CCA 72 bp | CCGGAGCCACACTTGCGGCATAAGATTTCCATGTTATaGGTCAAGAATCCTTCACCCACCAAGGAGACCGAG | + |
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Preference number: 6 (lower is better) Translates to: PEPHLRHKISML*VKNPSPTKETE Trigger: CTCGGTCTCCTTGGTGGGTGAAGGATTCTTGACCCATAACATGGAAATCTTATGCCGCAAGTGTGGCTCCGG 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000029922.14 ENSMUST00000108204.2 |
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| CDS GCA 72 bp | GGCACCTCTGAGGCCAGTGATGGGTTTGGTGCAGGCTaGACACTTTTTAGCATAAAGATGGTTGTAGCAATC | + |
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Preference number: 6 (lower is better) Translates to: GTSEASDGFGAG*TLFSIKMVVAI Trigger: GATTGCTACAACCATCTTTATGCTAAAAAGTGTGCAGCCTGCACCAAACCCATCACTGGCCTCAGAGGTGCC 50% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENSMUST00000029922.14 ENSMUST00000108204.2 |
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| CDS TCA 72 bp | GCTTTTCCACCAAAGAGTGATGGCATTTGTTGCACCTaGAGCATCCTTCATGCCAGTGACGGTTTTTGTAGC | + |
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Preference number: 6 (lower is better) Translates to: AFPPKSDGICCT*SILHASDGFCS Trigger: GCTACAAAAACCGTCACTGGCATGAAGGATGCTTCAGGTGCAACAAATGCCATCACTCTTTGGTGGAAAAGC 47% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENSMUST00000029922.14 ENSMUST00000108204.2 |
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| CDS TCA 72 bp | TCATCCTTGGCAACGAAAGGCTTTTCCACCAAAGAGTaGTGGCATTTGTTGCACCTGAAGCATCCTTCATGC | + |
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Preference number: 6 (lower is better) Translates to: SSLATKGFSTKE*WHLLHLKHPSC Trigger: GCATGAAGGATGCTTCAGGTGCAACAAATGCCATCACTCTTTGGTGGAAAAGCCTTTCGTTGCCAAGGATGA 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000029922.14 ENSMUST00000108204.2 |
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| CDS TCA 72 bp | GATCGTAGCAGGAGATGCAGTATAGATTATCATCCTTaGGTACATATTTCTTCCCAATCAGGGATGAAGTGC | + |
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Preference number: 6 (lower is better) Translates to: DRSRRCSIDYHP*VHISSQSGMKC Trigger: GCACTTCATCCCTGATTGGGAAGAAATATGTACTCAAGGATGATAATCTATACTGCATCTCCTGCTACGATC 42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000029922.14 ENSMUST00000108204.2 |
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| CDS TCA 72 bp | ATCATCCTTGAGTACATATTTCTTCCCAATCAGGGATaGAGTGCAGTATTGACAATCAAATTGACTACTTGT | + |
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Preference number: 6 (lower is better) Translates to: IILEYIFLPNQG*SAVLTIKLTTC Trigger: ACAAGTAGTCAATTTGATTGTCAATACTGCACTTCATCCCTGATTGGGAAGAAATATGTACTCAAGGATGAT 36% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000029922.14 ENSMUST00000108204.2 |
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