Pregenerated sensors for FHIT (Mus musculus)
Ensembl gene IDs: ENSMUSG00000060579Ensembl transcript IDs: ENSMUST00000160340.8, ENSMUST00000160956.2, ENSMUST00000161302.8, ENSMUST00000161895.8, ENSMUST00000162278.8, ENSMUST00000162817.3, ENSMUST00000179394.8
Found 69 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR TCA 90 bp | AGGCTGTCAATGCCACTGTTTGGGAAGCTAGCCTATTTGTCATCGTaGTGGAAGCATAATACTAGTGGCTTCCACACATGCAATAAAGTT | + |
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Preference number: 1 (lower is better) Translates to: RLSMPLFGKLAYLSS*WKHNTSGFHTCNKV Trigger: AACTTTATTGCATGTGTGGAAGCCACTAGTATTATGCTTCCATCACGATGACAAATAGGCTAGCTTCCCAAACAGTGGCATTGACAGCCT 43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000160340.8 ENSMUST00000161302.8 ENSMUST00000162278.8 |
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| 3UTR-3UTR GCA 90 bp | GCTGTCAATGCCACTGTTTGGGAAGCTAGCCTATTTGTCATCGTGATGGAAGCAGGGTCCATTTTCTTATaGCTTGGGAATCGTTTGAGT | + |
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Preference number: 2 (lower is better) Translates to: AVNATVWEASLFVIVMEAGSIFL*LGNRLS Trigger: ACTCAAACGATTCCCAAGGCATAAGAAAATGGACCC...TGCTTCCATCACGATGACAAATAGGCTAGCTTCCCAAACAGTGGCATTGACAGC 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000160340.8 ENSMUST00000161302.8 ENSMUST00000162278.8 |
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| 3UTR-3UTR GCA 90 bp | GGAAATGTTACTATTCTAAGTACAGAACTGAGGAACGGTGGCAGGCTGTCAATGGGGTCCATTTTCTTATaGCTTGGGAATCGTTTGAGT | + |
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Preference number: 2 (lower is better) Translates to: GNVTILSTELRNGGRLSMGSIFL*LGNRLS Trigger: ACTCAAACGATTCCCAAGGCATAAGAAAATGGACCC...CATTGACAGCCTGCCACCGTTCCTCAGTTCTGTACTTAGAATAGTAACATTTCC 43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 3 transcripts: ENSMUST00000160340.8 ENSMUST00000161302.8 ENSMUST00000162278.8 |
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| 3UTR-3UTR GCA 90 bp | ACTATTCTAAGTACAGAACTGAGGAACGGTGGCAGGCTGTCAATGCCACTGTTTAGTGGCTTCCACACATaGAATAAAGTTCTTTGTACA | + |
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Preference number: 2 (lower is better) Translates to: TILSTELRNGGRLSMPLFSGFHT*NKVLCT Trigger: TGTACAAAGAACTTTATTGCATGTGTGGAAGCCACT...AAACAGTGGCATTGACAGCCTGCCACCGTTCCTCAGTTCTGTACTTAGAATAGT 42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000160340.8 ENSMUST00000161302.8 ENSMUST00000162278.8 |
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| 3UTR CCA 72 bp | ACTGAGGAACGGTGGCAGGCTGTCAATGCCACTGTTTaGGAAGCTAGCCTATTTGTCATCGTGATGGAAGCA | + |
|
Preference number: 3 (lower is better) Translates to: TEERWQAVNATV*EASLFVIVMEA Trigger: TGCTTCCATCACGATGACAAATAGGCTAGCTTCCCAAACAGTGGCATTGACAGCCTGCCACCGTTCCTCAGT 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000160340.8 ENSMUST00000161302.8 ENSMUST00000162278.8 |
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| 3UTR CCA 72 bp | GTACAAGGCTGTGGGGTCGTGGGGTACAATAAAGAGTaGTTAGCTTCATTTCCAATGTCGAAGACTCCAGAA | + |
|
Preference number: 3 (lower is better) Translates to: VQGCGVVGYNKE*LASFPMSKTPE Trigger: TTCTGGAGTCTTCGACATTGGAAATGAAGCTAACCACTCTTTATTGTACCCCACGACCCCACAGCCTTGTAC 47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 3 transcripts: ENSMUST00000160340.8 ENSMUST00000161302.8 ENSMUST00000162278.8 |
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| 3UTR TCA 72 bp | ATGCCACTGTTTGGGAAGCTAGCCTATTTGTCATCGTaGTGGAAGCATAATACTAGTGGCTTCCACACATGC | + |
|
Preference number: 3 (lower is better) Translates to: MPLFGKLAYLSS*WKHNTSGFHTC Trigger: GCATGTGTGGAAGCCACTAGTATTATGCTTCCATCACGATGACAAATAGGCTAGCTTCCCAAACAGTGGCAT 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000160340.8 ENSMUST00000161302.8 ENSMUST00000162278.8 |
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| 3UTR CCA 72 bp | AAATGTTACTATTCTAAGTACAGAACTGAGGAACGGTaGCAGGCTGTCAATGCCACTGTTTGGGAAGCTAGC | + |
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Preference number: 3 (lower is better) Translates to: KCYYSKYRTEER*QAVNATVWEAS Trigger: GCTAGCTTCCCAAACAGTGGCATTGACAGCCTGCCACCGTTCCTCAGTTCTGTACTTAGAATAGTAACATTT 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000160340.8 ENSMUST00000161302.8 ENSMUST00000162278.8 |
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| CDS-3UTR GCA 90 bp | ACTATTCTAAGTACAGAACTGAGGAACGGTGGCAGGCTGTCAATGCCACTGTTTCCGGGGGAAGTCCCCTaGCTTCCTGGGAAGAACGTG | + |
|
Preference number: 4 (lower is better) Translates to: TILSTELRNGGRLSMPLFPGEVP*LPGKNV Trigger: CACGTTCTTCCCAGGAAGGCAGGGGACTTCCCCCGG...AAACAGTGGCATTGACAGCCTGCCACCGTTCCTCAGTTCTGTACTTAGAATAGT 53% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 3 transcripts: ENSMUST00000160340.8 ENSMUST00000161302.8 ENSMUST00000162278.8 |
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| CDS-3UTR GCA 90 bp | GGGGTCGTGGGGTACAATAAAGAGTGGTTAGCTTCATTTCCAATGTCGAAGACTCCGGGGGAAGTCCCCTaGCTTCCTGGGAAGAACGTG | + |
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Preference number: 4 (lower is better) Translates to: GVVGYNKEWLASFPMSKTPGEVP*LPGKNV Trigger: CACGTTCTTCCCAGGAAGGCAGGGGACTTCCCCCGG...AGTCTTCGACATTGGAAATGAAGCTAACCACTCTTTATTGTACCCCACGACCCC 53% GC, longest homopolymer 5 nt, total homopolymer stretches 17 nt. Matches the following 3 transcripts: ENSMUST00000160340.8 ENSMUST00000161302.8 ENSMUST00000162278.8 |
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| CDS-3UTR CCA 90 bp | GAGGAACGGTGGCAGGCTGTCAATGCCACTGTTTGGGAAGCTAGCCTATTTGTCAGTCCCCTGCCTTCCTaGGAAGAACGTGGACATGTA | + |
|
Preference number: 4 (lower is better) Translates to: EERWQAVNATVWEASLFVSPLPS*EERGHV Trigger: TACATGTCCACGTTCTTCCCAGGAAGGCAGGGGACT...GACAAATAGGCTAGCTTCCCAAACAGTGGCATTGACAGCCTGCCACCGTTCCTC 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000160340.8 ENSMUST00000161302.8 ENSMUST00000162278.8 |
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| CDS-3UTR GCA 90 bp | GAGGAACGGTGGCAGGCTGTCAATGCCACTGTTTGGGAAGCTAGCCTATTTGTCACATGCTTCACAGTCTaGCCAGCTTCAGGACCATCT | + |
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Preference number: 4 (lower is better) Translates to: EERWQAVNATVWEASLFVTCFTV*PASGPS Trigger: AGATGGTCCTGAAGCTGGGCAGACTGTGAAGCATGT...GACAAATAGGCTAGCTTCCCAAACAGTGGCATTGACAGCCTGCCACCGTTCCTC 52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000160340.8 ENSMUST00000161302.8 ENSMUST00000162278.8 |
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| CDS-3UTR CCA 90 bp | TCCAATGTCGAAGACTCCAGAAGAATGGGGTCCATTTTCTTATGCCTTGGGAATACGGAAGCGCTCTACTaGCCTCAGCGGGCACACGAG | + |
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Preference number: 4 (lower is better) Translates to: SNVEDSRRMGSIFLCLGNTEALY*PQRAHE Trigger: CTCGTGTGCCCGCTGAGGCCAGTAGAGCGCTTCCGT...ATTCCCAAGGCATAAGAAAATGGACCCCATTCTTCTGGAGTCTTCGACATTGGA 52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 3 transcripts: ENSMUST00000160340.8 ENSMUST00000161302.8 ENSMUST00000162278.8 |
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| CDS-3UTR GCA 90 bp | TATTCTAAGTACAGAACTGAGGAACGGTGGCAGGCTGTCAATGCCACTGTTTGGGAGGTCCCCTGGAAATaGTTCTCCACCACTGTCCCA | + |
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Preference number: 4 (lower is better) Translates to: YSKYRTEERWQAVNATVWEVPWK*FSTTVP Trigger: TGGGACAGTGGTGGAGAAGCATTTCCAGGGGACCTC...CCAAACAGTGGCATTGACAGCCTGCCACCGTTCCTCAGTTCTGTACTTAGAATA 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000160340.8 ENSMUST00000161302.8 ENSMUST00000162278.8 |
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| CDS-3UTR GCA 90 bp | TGGAAATGTTACTATTCTAAGTACAGAACTGAGGAACGGTGGCAGGCTGTCAATCCGGGGGAAGTCCCCTaGCTTCCTGGGAAGAACGTG | + |
|
Preference number: 4 (lower is better) Translates to: WKCYYSKYRTEERWQAVNPGEVP*LPGKNV Trigger: CACGTTCTTCCCAGGAAGGCAGGGGACTTCCCCCGG...ATTGACAGCCTGCCACCGTTCCTCAGTTCTGTACTTAGAATAGTAACATTTCCA 51% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 3 transcripts: ENSMUST00000160340.8 ENSMUST00000161302.8 ENSMUST00000162278.8 |
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| CDS-3UTR GCA 90 bp | CCAATGTCGAAGACTCCAGAAGAATGGGGTCCATTTTCTTATGCCTTGGGAATCCAGAGCCTCCGCCTCTaGAGCCATCTCCTTCTCAGA | + |
|
Preference number: 4 (lower is better) Translates to: PMSKTPEEWGPFSYALGIQSLRL*SHLLLR Trigger: TCTGAGAAGGAGATGGCTGCAGAGGCGGAGGCTCTG...GATTCCCAAGGCATAAGAAAATGGACCCCATTCTTCTGGAGTCTTCGACATTGG 51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 3 transcripts: ENSMUST00000160340.8 ENSMUST00000161302.8 ENSMUST00000162278.8 |
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| CDS-3UTR CCA 90 bp | ACTGAGGAACGGTGGCAGGCTGTCAATGCCACTGTTTGGGAAGCTAGCCTATTTCCAACGTCTTGCATTTaGTTGCACTGTGGGGAGGTA | + |
|
Preference number: 4 (lower is better) Translates to: TEERWQAVNATVWEASLFPTSCI*LHCGEV Trigger: TACCTCCCCACAGTGCAACCAAATGCAAGACGTTGG...AAATAGGCTAGCTTCCCAAACAGTGGCATTGACAGCCTGCCACCGTTCCTCAGT 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000160340.8 |
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| CDS-3UTR CCA 90 bp | TGGAAATGTTACTATTCTAAGTACAGAACTGAGGAACGGTGGCAGGCTGTCAATACGGAAGCGCTCTACTaGCCTCAGCGGGCACACGAG | + |
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Preference number: 4 (lower is better) Translates to: WKCYYSKYRTEERWQAVNTEALY*PQRAHE Trigger: CTCGTGTGCCCGCTGAGGCCAGTAGAGCGCTTCCGT...ATTGACAGCCTGCCACCGTTCCTCAGTTCTGTACTTAGAATAGTAACATTTCCA 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000160340.8 ENSMUST00000161302.8 ENSMUST00000162278.8 |
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| CDS-3UTR CCA 90 bp | ATTCTAAGTACAGAACTGAGGAACGGTGGCAGGCTGTCAATGCCACTGTTTGGGGTGATGGAGGTCCCCTaGAAATGCTTCTCCACCACT | + |
|
Preference number: 4 (lower is better) Translates to: ILSTELRNGGRLSMPLFGVMEVP*KCFSTT Trigger: AGTGGTGGAGAAGCATTTCCAGGGGACCTCCATCAC...CCCAAACAGTGGCATTGACAGCCTGCCACCGTTCCTCAGTTCTGTACTTAGAAT 51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 3 transcripts: ENSMUST00000160340.8 ENSMUST00000161302.8 ENSMUST00000162278.8 |
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| CDS-3UTR CCA 90 bp | TGGCAGGCTGTCAATGCCACTGTTTGGGAAGCTAGCCTATTTGTCATCGTGATGAGTCCCCTGCCTTCCTaGGAAGAACGTGGACATGTA | + |
|
Preference number: 4 (lower is better) Translates to: WQAVNATVWEASLFVIVMSPLPS*EERGHV Trigger: TACATGTCCACGTTCTTCCCAGGAAGGCAGGGGACT...CATCACGATGACAAATAGGCTAGCTTCCCAAACAGTGGCATTGACAGCCTGCCA 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000160340.8 ENSMUST00000161302.8 ENSMUST00000162278.8 |
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| CDS-3UTR TCA 90 bp | GCTGTCAATGCCACTGTTTGGGAAGCTAGCCTATTTGTCATCGTGATGGAAGCACTTGCATGGAGAAGGTaGTGGAGGTCCCCTGGAAAT | + |
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Preference number: 4 (lower is better) Translates to: AVNATVWEASLFVIVMEALAWRR*WRSPGN Trigger: ATTTCCAGGGGACCTCCATCACCTTCTCCATGCAAG...TGCTTCCATCACGATGACAAATAGGCTAGCTTCCCAAACAGTGGCATTGACAGC 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000160340.8 ENSMUST00000161302.8 ENSMUST00000162278.8 |
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| CDS-3UTR GCA 90 bp | ATTCTAAGTACAGAACTGAGGAACGGTGGCAGGCTGTCAATGCCACTGTTTGGGCGTCTTGCATTTGGTTaGACTGTGGGGAGGTATTCC | + |
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Preference number: 4 (lower is better) Translates to: ILSTELRNGGRLSMPLFGRLAFG*TVGRYS Trigger: GGAATACCTCCCCACAGTGCAACCAAATGCAAGACG...CCCAAACAGTGGCATTGACAGCCTGCCACCGTTCCTCAGTTCTGTACTTAGAAT 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000160340.8 |
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| CDS-3UTR GCA 90 bp | GCTGTCAATGCCACTGTTTGGGAAGCTAGCCTATTTGTCATCGTGATGGAAGCACCTTGGGGTCCTCAGTaGAAGATGGAGAGTTCTTGC | + |
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Preference number: 4 (lower is better) Translates to: AVNATVWEASLFVIVMEAPWGPQ*KMESSC Trigger: GCAAGAACTCTCCATCTTGCACTGAGGACCCCAAGG...TGCTTCCATCACGATGACAAATAGGCTAGCTTCCCAAACAGTGGCATTGACAGC 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000160340.8 |
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| CDS-3UTR GCA 90 bp | ATTCTAAGTACAGAACTGAGGAACGGTGGCAGGCTGTCAATGCCACTGTTTGGGACGTGGACATGTACATaGTTCACAGTCTGCCCAGCT | + |
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Preference number: 4 (lower is better) Translates to: ILSTELRNGGRLSMPLFGTWTCT*FTVCPA Trigger: AGCTGGGCAGACTGTGAAGCATGTACATGTCCACGT...CCCAAACAGTGGCATTGACAGCCTGCCACCGTTCCTCAGTTCTGTACTTAGAAT 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000160340.8 ENSMUST00000161302.8 ENSMUST00000162278.8 |
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| CDS-3UTR CCA 90 bp | TATTCTAAGTACAGAACTGAGGAACGGTGGCAGGCTGTCAATGCCACTGTTTGGGTGATGGAGGTCCCCTaGAAATGCTTCTCCACCACT | + |
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Preference number: 4 (lower is better) Translates to: YSKYRTEERWQAVNATVWVMEVP*KCFSTT Trigger: AGTGGTGGAGAAGCATTTCCAGGGGACCTCCATCAC...CCAAACAGTGGCATTGACAGCCTGCCACCGTTCCTCAGTTCTGTACTTAGAATA 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000160340.8 ENSMUST00000161302.8 ENSMUST00000162278.8 |
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| CDS-3UTR TCA 90 bp | CCAATGTCGAAGACTCCAGAAGAATGGGGTCCATTTTCTTATGCCTTGGGAATCCTTGCATGGAGAAGGTaGTGGAGGTCCCCTGGAAAT | + |
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Preference number: 4 (lower is better) Translates to: PMSKTPEEWGPFSYALGILAWRR*WRSPGN Trigger: ATTTCCAGGGGACCTCCATCACCTTCTCCATGCAAG...GATTCCCAAGGCATAAGAAAATGGACCCCATTCTTCTGGAGTCTTCGACATTGG 49% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 3 transcripts: ENSMUST00000160340.8 ENSMUST00000161302.8 ENSMUST00000162278.8 |
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| CDS-3UTR GCA 90 bp | TCCAATGTCGAAGACTCCAGAAGAATGGGGTCCATTTTCTTATGCCTTGGGAATGAGGTCCCCTGGAAATaGTTCTCCACCACTGTCCCA | + |
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Preference number: 4 (lower is better) Translates to: SNVEDSRRMGSIFLCLGNEVPWK*FSTTVP Trigger: TGGGACAGTGGTGGAGAAGCATTTCCAGGGGACCTC...ATTCCCAAGGCATAAGAAAATGGACCCCATTCTTCTGGAGTCTTCGACATTGGA 49% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 3 transcripts: ENSMUST00000160340.8 ENSMUST00000161302.8 ENSMUST00000162278.8 |
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| CDS-3UTR GCA 90 bp | TATTCTAAGTACAGAACTGAGGAACGGTGGCAGGCTGTCAATGCCACTGTTTGGACGTGGACATGTACATaGTTCACAGTCTGCCCAGCT | + |
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Preference number: 4 (lower is better) Translates to: YSKYRTEERWQAVNATVWTWTCT*FTVCPA Trigger: AGCTGGGCAGACTGTGAAGCATGTACATGTCCACGT...CCAAACAGTGGCATTGACAGCCTGCCACCGTTCCTCAGTTCTGTACTTAGAATA 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000160340.8 ENSMUST00000161302.8 ENSMUST00000162278.8 |
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| CDS-3UTR GCA 90 bp | TGGAAATGTTACTATTCTAAGTACAGAACTGAGGAACGGTGGCAGGCTGTCAATCAGAGCCTCCGCCTCTaGAGCCATCTCCTTCTCAGA | + |
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Preference number: 4 (lower is better) Translates to: WKCYYSKYRTEERWQAVNQSLRL*SHLLLR Trigger: TCTGAGAAGGAGATGGCTGCAGAGGCGGAGGCTCTG...ATTGACAGCCTGCCACCGTTCCTCAGTTCTGTACTTAGAATAGTAACATTTCCA 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000160340.8 ENSMUST00000161302.8 ENSMUST00000162278.8 |
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| CDS-3UTR TCA 90 bp | ATTCTAAGTACAGAACTGAGGAACGGTGGCAGGCTGTCAATGCCACTGTTTGGGAGGACAGTTCAGTTTTaGGAAAAACCACAGAGGGCT | + |
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Preference number: 4 (lower is better) Translates to: ILSTELRNGGRLSMPLFGRTVQF*EKPQRA Trigger: AGCCCTCTGTGGTTTTTCTCAAAACTGAACTGTCCT...CCCAAACAGTGGCATTGACAGCCTGCCACCGTTCCTCAGTTCTGTACTTAGAAT 48% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 3 transcripts: ENSMUST00000160340.8 ENSMUST00000161302.8 ENSMUST00000162278.8 |
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| CDS-3UTR GCA 90 bp | CAAGGCTGTGGGGTCGTGGGGTACAATAAAGAGTGGTTAGCTTCATTTCCAATGAAGATGGAGAGTTCTTaGAGATGTGTGACCGAGCAG | + |
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Preference number: 4 (lower is better) Translates to: QGCGVVGYNKEWLASFPMKMESS*RCVTEQ Trigger: CTGCTCGGTCACACATCTGCAAGAACTCTCCATCTT...CATTGGAAATGAAGCTAACCACTCTTTATTGTACCCCACGACCCCACAGCCTTG 48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000160340.8 |
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| CDS-3UTR GCA 90 bp | TTCATTTCCAATGTCGAAGACTCCAGAAGAATGGGGTCCATTTTCTTATGCCTTCAGAGCCTCCGCCTCTaGAGCCATCTCCTTCTCAGA | + |
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Preference number: 4 (lower is better) Translates to: FISNVEDSRRMGSIFLCLQSLRL*SHLLLR Trigger: TCTGAGAAGGAGATGGCTGCAGAGGCGGAGGCTCTG...AAGGCATAAGAAAATGGACCCCATTCTTCTGGAGTCTTCGACATTGGAAATGAA 48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 3 transcripts: ENSMUST00000160340.8 ENSMUST00000161302.8 ENSMUST00000162278.8 |
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| CDS-3UTR CCA 90 bp | GTCGTGGGGTACAATAAAGAGTGGTTAGCTTCATTTCCAATGTCGAAGACTCCAGTGATGGAGGTCCCCTaGAAATGCTTCTCCACCACT | + |
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Preference number: 4 (lower is better) Translates to: VVGYNKEWLASFPMSKTPVMEVP*KCFSTT Trigger: AGTGGTGGAGAAGCATTTCCAGGGGACCTCCATCAC...TGGAGTCTTCGACATTGGAAATGAAGCTAACCACTCTTTATTGTACCCCACGAC 48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 3 transcripts: ENSMUST00000160340.8 ENSMUST00000161302.8 ENSMUST00000162278.8 |
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| CDS-3UTR CCA 90 bp | TCCAATGTCGAAGACTCCAGAAGAATGGGGTCCATTTTCTTATGCCTTGGGAATAGTCCCCTGCCTTCCTaGGAAGAACGTGGACATGTA | + |
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Preference number: 4 (lower is better) Translates to: SNVEDSRRMGSIFLCLGNSPLPS*EERGHV Trigger: TACATGTCCACGTTCTTCCCAGGAAGGCAGGGGACT...ATTCCCAAGGCATAAGAAAATGGACCCCATTCTTCTGGAGTCTTCGACATTGGA 48% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 3 transcripts: ENSMUST00000160340.8 ENSMUST00000161302.8 ENSMUST00000162278.8 |
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| CDS-3UTR TCA 90 bp | GCTGTCAATGCCACTGTTTGGGAAGCTAGCCTATTTGTCATCGTGATGGAAGCAAGGACAGTTCAGTTTTaGGAAAAACCACAGAGGGCT | + |
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Preference number: 4 (lower is better) Translates to: AVNATVWEASLFVIVMEARTVQF*EKPQRA Trigger: AGCCCTCTGTGGTTTTTCTCAAAACTGAACTGTCCT...TGCTTCCATCACGATGACAAATAGGCTAGCTTCCCAAACAGTGGCATTGACAGC 47% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 3 transcripts: ENSMUST00000160340.8 ENSMUST00000161302.8 ENSMUST00000162278.8 |
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| CDS-3UTR TCA 90 bp | ACTATTCTAAGTACAGAACTGAGGAACGGTGGCAGGCTGTCAATGCCACTGTTTACTCTCTGGGTCACTTaGAACAAATCGGCCACTTCA | + |
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Preference number: 4 (lower is better) Translates to: TILSTELRNGGRLSMPLFTLWVT*NKSATS Trigger: TGAAGTGGCCGATTTGTTTCAAGTGACCCAGAGAGT...AAACAGTGGCATTGACAGCCTGCCACCGTTCCTCAGTTCTGTACTTAGAATAGT 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000160340.8 ENSMUST00000161302.8 ENSMUST00000162278.8 |
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| CDS-3UTR GCA 90 bp | GTCGTGGGGTACAATAAAGAGTGGTTAGCTTCATTTCCAATGTCGAAGACTCCAGCTTCAGGACCATCTTaGATGGAGAAGGTGATGGAG | + |
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Preference number: 4 (lower is better) Translates to: VVGYNKEWLASFPMSKTPASGPS*MEKVME Trigger: CTCCATCACCTTCTCCATGCAAGATGGTCCTGAAGC...TGGAGTCTTCGACATTGGAAATGAAGCTAACCACTCTTTATTGTACCCCACGAC 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000160340.8 ENSMUST00000161302.8 ENSMUST00000162278.8 |
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| CDS-3UTR GCA 90 bp | GTCGTGGGGTACAATAAAGAGTGGTTAGCTTCATTTCCAATGTCGAAGACTCCAACATGCTTCACAGTCTaGCCAGCTTCAGGACCATCT | + |
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Preference number: 4 (lower is better) Translates to: VVGYNKEWLASFPMSKTPTCFTV*PASGPS Trigger: AGATGGTCCTGAAGCTGGGCAGACTGTGAAGCATGT...TGGAGTCTTCGACATTGGAAATGAAGCTAACCACTCTTTATTGTACCCCACGAC 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000160340.8 ENSMUST00000161302.8 ENSMUST00000162278.8 |
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| CDS-3UTR TCA 90 bp | GGAAATGTTACTATTCTAAGTACAGAACTGAGGAACGGTGGCAGGCTGTCAATGACTCTCTGGGTCACTTaGAACAAATCGGCCACTTCA | + |
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Preference number: 4 (lower is better) Translates to: GNVTILSTELRNGGRLSMTLWVT*NKSATS Trigger: TGAAGTGGCCGATTTGTTTCAAGTGACCCAGAGAGT...CATTGACAGCCTGCCACCGTTCCTCAGTTCTGTACTTAGAATAGTAACATTTCC 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000160340.8 ENSMUST00000161302.8 ENSMUST00000162278.8 |
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| CDS-3UTR GCA 90 bp | CTTCATTTCCAATGTCGAAGACTCCAGAAGAATGGGGTCCATTTTCTTATGCCTGCTTCAGGACCATCTTaGATGGAGAAGGTGATGGAG | + |
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Preference number: 4 (lower is better) Translates to: LHFQCRRLQKNGVHFLMPASGPS*MEKVME Trigger: CTCCATCACCTTCTCCATGCAAGATGGTCCTGAAGC...AGGCATAAGAAAATGGACCCCATTCTTCTGGAGTCTTCGACATTGGAAATGAAG 46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 3 transcripts: ENSMUST00000160340.8 ENSMUST00000161302.8 ENSMUST00000162278.8 |
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| CDS-3UTR GCA 90 bp | TGGAAATGTTACTATTCTAAGTACAGAACTGAGGAACGGTGGCAGGCTGTCAATACGTGGACATGTACATaGTTCACAGTCTGCCCAGCT | + |
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Preference number: 4 (lower is better) Translates to: WKCYYSKYRTEERWQAVNTWTCT*FTVCPA Trigger: AGCTGGGCAGACTGTGAAGCATGTACATGTCCACGT...ATTGACAGCCTGCCACCGTTCCTCAGTTCTGTACTTAGAATAGTAACATTTCCA 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000160340.8 ENSMUST00000161302.8 ENSMUST00000162278.8 |
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| CDS-3UTR TCA 90 bp | CTTCATTTCCAATGTCGAAGACTCCAGAAGAATGGGGTCCATTTTCTTATGCCTACTCTCTGGGTCACTTaGAACAAATCGGCCACTTCA | + |
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Preference number: 4 (lower is better) Translates to: LHFQCRRLQKNGVHFLMPTLWVT*NKSATS Trigger: TGAAGTGGCCGATTTGTTTCAAGTGACCCAGAGAGT...AGGCATAAGAAAATGGACCCCATTCTTCTGGAGTCTTCGACATTGGAAATGAAG 44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 3 transcripts: ENSMUST00000160340.8 ENSMUST00000161302.8 ENSMUST00000162278.8 |
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| CDS-3UTR GCA 90 bp | TTCATTTCCAATGTCGAAGACTCCAGAAGAATGGGGTCCATTTTCTTATGCCTTGCTTCAGGACCATCTTaGATGGAGAAGGTGATGGAG | + |
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Preference number: 4 (lower is better) Translates to: FISNVEDSRRMGSIFLCLASGPS*MEKVME Trigger: CTCCATCACCTTCTCCATGCAAGATGGTCCTGAAGC...AAGGCATAAGAAAATGGACCCCATTCTTCTGGAGTCTTCGACATTGGAAATGAA 44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 3 transcripts: ENSMUST00000160340.8 ENSMUST00000161302.8 ENSMUST00000162278.8 |
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| CDS-3UTR CCA 90 bp | TGGAAATGTTACTATTCTAAGTACAGAACTGAGGAACGGTGGCAGGCTGTCAATGTCCTCAGTGCAAGATaGAGAGTTCTTGCAGATGTG | + |
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Preference number: 4 (lower is better) Translates to: WKCYYSKYRTEERWQAVNVLSAR*RVLADV Trigger: CACATCTGCAAGAACTCTCCATCTTGCACTGAGGAC...ATTGACAGCCTGCCACCGTTCCTCAGTTCTGTACTTAGAATAGTAACATTTCCA 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000160340.8 |
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| CDS-3UTR TCA 90 bp | CTTCATTTCCAATGTCGAAGACTCCAGAAGAATGGGGTCCATTTTCTTATGCCTGGTAGAATACTATCTTaGAGGCACCAACGTCTTGCA | + |
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Preference number: 4 (lower is better) Translates to: LHFQCRRLQKNGVHFLMPGRILS*RHQRLA Trigger: TGCAAGACGTTGGTGCCTTCAAGATAGTATTCTACC...AGGCATAAGAAAATGGACCCCATTCTTCTGGAGTCTTCGACATTGGAAATGAAG 43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000160340.8 |
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| CDS-3UTR TCA 90 bp | TGGAAATGTTACTATTCTAAGTACAGAACTGAGGAACGGTGGCAGGCTGTCAATAGGACAGTTCAGTTTTaGGAAAAACCACAGAGGGCT | + |
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Preference number: 4 (lower is better) Translates to: WKCYYSKYRTEERWQAVNRTVQF*EKPQRA Trigger: AGCCCTCTGTGGTTTTTCTCAAAACTGAACTGTCCT...ATTGACAGCCTGCCACCGTTCCTCAGTTCTGTACTTAGAATAGTAACATTTCCA 43% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 3 transcripts: ENSMUST00000160340.8 ENSMUST00000161302.8 ENSMUST00000162278.8 |
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| CDS-3UTR TCA 90 bp | TTAGCAACCACTTTATTTTCATCTAGGCTCAGGGACAGTTTGGAAATGTTACTACTTGCATGGAGAAGGTaGTGGAGGTCCCCTGGAAAT | + |
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Preference number: 4 (lower is better) Translates to: LATTLFSSRLRDSLEMLLLAWRR*WRSPGN Trigger: ATTTCCAGGGGACCTCCATCACCTTCTCCATGCAAG...TAGTAACATTTCCAAACTGTCCCTGAGCCTAGATGAAAATAAAGTGGTTGCTAA 43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000161302.8 |
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| CDS-3UTR CCA 90 bp | CCAATGTCGAAGACTCCAGAAGAATGGGGTCCATTTTCTTATGCCTTGGGAATCGGCTTGATGAGATGTTaGCCAAATCTAAATGACATG | + |
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Preference number: 4 (lower is better) Translates to: PMSKTPEEWGPFSYALGIGLMRC*PNLNDM Trigger: CATGTCATTTAGATTTGGCCAACATCTCATCAAGCC...GATTCCCAAGGCATAAGAAAATGGACCCCATTCTTCTGGAGTCTTCGACATTGG 43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000160340.8 |
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| CDS-3UTR TCA 90 bp | TCCAATGTCGAAGACTCCAGAAGAATGGGGTCCATTTTCTTATGCCTTGGGAATTTGGCCAAATCTAAATaGCATGGTCTCACAGTAAAA | + |
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Preference number: 4 (lower is better) Translates to: SNVEDSRRMGSIFLCLGNLAKSK*HGLTVK Trigger: TTTTACTGTGAGACCATGTCATTTAGATTTGGCCAA...ATTCCCAAGGCATAAGAAAATGGACCCCATTCTTCTGGAGTCTTCGACATTGGA 41% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000160340.8 |
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| CDS GCA 90 bp | CGGGGGAAGTCCCCTGCCTTCCTGGGAAGAACGTGGACATGTACATaGTTCACAGTCTGCCCAGCTTCAGGACCATCTTGCATGGAGAAG | + |
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Preference number: 5 (lower is better) Translates to: RGKSPAFLGRTWTCT*FTVCPASGPSCMEK Trigger: CTTCTCCATGCAAGATGGTCCTGAAGCTGGGCAGACTGTGAAGCATGTACATGTCCACGTTCTTCCCAGGAAGGCAGGGGACTTCCCCCG 57% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 5 transcripts: ENSMUST00000160340.8 ENSMUST00000161302.8 ENSMUST00000161895.8 ENSMUST00000162278.8 ENSMUST00000179394.8 |
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| CDS TCA 90 bp | CTCCTTGGGGTCCTCAGTGCAAGATGGAGAGTTCTTGCAGATGTGTaGCCGAGCAGGTTGTCCCAGGGCACCTTCAGATTAGTCCAACCT | + |
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Preference number: 5 (lower is better) Translates to: LLGVLSARWRVLADV*PSRLSQGTFRLVQP Trigger: AGGTTGGACTAATCTGAAGGTGCCCTGGGACAACCTGCTCGGTCACACATCTGCAAGAACTCTCCATCTTGCACTGAGGACCCCAAGGAG 54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000160340.8 |
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| CDS GCA 90 bp | CCTGCCTTCCTGGGAAGAACGTGGACATGTACATGCTTCACAGTCTaGCCAGCTTCAGGACCATCTTGCATGGAGAAGGTGATGGAGGTC | + |
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Preference number: 5 (lower is better) Translates to: PAFLGRTWTCTCFTV*PASGPSCMEKVMEV Trigger: GACCTCCATCACCTTCTCCATGCAAGATGGTCCTGAAGCTGGGCAGACTGTGAAGCATGTACATGTCCACGTTCTTCCCAGGAAGGCAGG 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 5 transcripts: ENSMUST00000160340.8 ENSMUST00000161302.8 ENSMUST00000161895.8 ENSMUST00000162278.8 ENSMUST00000179394.8 |
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| CDS CCA 90 bp | ATGTTGTCATTCCGGGGGAAGTCCCCTGCCTTCCTGGGAAGAACGTaGACATGTACATGCTTCACAGTCTGCCCAGCTTCAGGACCATCT | + |
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Preference number: 5 (lower is better) Translates to: MLSFRGKSPAFLGRT*TCTCFTVCPASGPS Trigger: AGATGGTCCTGAAGCTGGGCAGACTGTGAAGCATGTACATGTCCACGTTCTTCCCAGGAAGGCAGGGGACTTCCCCCGGAATGACAACAT 54% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 5 transcripts: ENSMUST00000160340.8 ENSMUST00000161302.8 ENSMUST00000161895.8 ENSMUST00000162278.8 ENSMUST00000179394.8 |
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| CDS TCA 90 bp | CCCTGGAAATGCTTCTCCACCACTGTCCCAACTCTCTGGGTCACTTaGAACAAATCGGCCACTTCATCAGGATGTAGGTCACGGAAGCGC | + |
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Preference number: 5 (lower is better) Translates to: PWKCFSTTVPTLWVT*NKSATSSGCRSRKR Trigger: GCGCTTCCGTGACCTACATCCTGATGAAGTGGCCGATTTGTTTCAAGTGACCCAGAGAGTTGGGACAGTGGTGGAGAAGCATTTCCAGGG 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 6 transcripts: ENSMUST00000160340.8 ENSMUST00000161302.8 ENSMUST00000161895.8 ENSMUST00000162278.8 ENSMUST00000162817.3 ENSMUST00000179394.8 |
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| CDS GCA 90 bp | ACAGTAAAAGCTCCTTGGGGTCCTCAGTGCAAGATGGAGAGTTCTTaGAGATGTGTGACCGAGCAGGTTGTCCCAGGGCACCTTCAGATT | + |
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Preference number: 5 (lower is better) Translates to: TVKAPWGPQCKMESS*RCVTEQVVPGHLQI Trigger: AATCTGAAGGTGCCCTGGGACAACCTGCTCGGTCACACATCTGCAAGAACTCTCCATCTTGCACTGAGGACCCCAAGGAGCTTTTACTGT 52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000160340.8 |
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| CDS GCA 90 bp | TTTCTGGAGCTCATCATAGATGTTGTCATTCCGGGGGAAGTCCCCTaGCTTCCTGGGAAGAACGTGGACATGTACATGCTTCACAGTCTG | + |
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Preference number: 5 (lower is better) Translates to: FLELIIDVVIPGEVP*LPGKNVDMYMLHSL Trigger: CAGACTGTGAAGCATGTACATGTCCACGTTCTTCCCAGGAAGGCAGGGGACTTCCCCCGGAATGACAACATCTATGATGAGCTCCAGAAA 51% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 5 transcripts: ENSMUST00000160340.8 ENSMUST00000161302.8 ENSMUST00000161895.8 ENSMUST00000162278.8 ENSMUST00000179394.8 |
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| CDS-3UTR CAA 90 bp | TGGCAGGCTGTCAATGCCACTGTTTGGGAAGCTAGCCTATTTGTCATCGTGATGAAAACCACAGAGGGCTaGATGAGATGTTGGCCAAAT | + |
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Preference number: 5 (lower is better) Translates to: WQAVNATVWEASLFVIVMKTTEG*MRCWPN Trigger: ATTTGGCCAACATCTCATCAAGCCCTCTGTGGTTTT...CATCACGATGACAAATAGGCTAGCTTCCCAAACAGTGGCATTGACAGCCTGCCA 48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000160340.8 ENSMUST00000161302.8 ENSMUST00000162278.8 |
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| CDS-3UTR CAA 90 bp | TCCAATGTCGAAGACTCCAGAAGAATGGGGTCCATTTTCTTATGCCTTGGGAATACGTCTTGCATTTGGTaGCACTGTGGGGAGGTATTC | + |
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Preference number: 5 (lower is better) Translates to: SNVEDSRRMGSIFLCLGNTSCIW*HCGEVF Trigger: GAATACCTCCCCACAGTGCAACCAAATGCAAGACGT...ATTCCCAAGGCATAAGAAAATGGACCCCATTCTTCTGGAGTCTTCGACATTGGA 47% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 1 transcripts: ENSMUST00000160340.8 |
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| CDS-3UTR CAA 90 bp | CCAATGTCGAAGACTCCAGAAGAATGGGGTCCATTTTCTTATGCCTTGGGAATCAACTCTCTGGGTCACTaGAAACAAATCGGCCACTTC | + |
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Preference number: 5 (lower is better) Translates to: PMSKTPEEWGPFSYALGINSLGH*KQIGHF Trigger: GAAGTGGCCGATTTGTTTCAAGTGACCCAGAGAGTT...GATTCCCAAGGCATAAGAAAATGGACCCCATTCTTCTGGAGTCTTCGACATTGG 47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 3 transcripts: ENSMUST00000160340.8 ENSMUST00000161302.8 ENSMUST00000162278.8 |
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| CDS-3UTR CAA 90 bp | CCAATGTCGAAGACTCCAGAAGAATGGGGTCCATTTTCTTATGCCTTGGGAATCAAAACCACAGAGGGCTaGATGAGATGTTGGCCAAAT | + |
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Preference number: 5 (lower is better) Translates to: PMSKTPEEWGPFSYALGIKTTEG*MRCWPN Trigger: ATTTGGCCAACATCTCATCAAGCCCTCTGTGGTTTT...GATTCCCAAGGCATAAGAAAATGGACCCCATTCTTCTGGAGTCTTCGACATTGG 46% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 3 transcripts: ENSMUST00000160340.8 ENSMUST00000161302.8 ENSMUST00000162278.8 |
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| CDS-3UTR CAA 90 bp | GGGGTCGTGGGGTACAATAAAGAGTGGTTAGCTTCATTTCCAATGTCGAAGACTAAAACCACAGAGGGCTaGATGAGATGTTGGCCAAAT | + |
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Preference number: 5 (lower is better) Translates to: GVVGYNKEWLASFPMSKTKTTEG*MRCWPN Trigger: ATTTGGCCAACATCTCATCAAGCCCTCTGTGGTTTT...AGTCTTCGACATTGGAAATGAAGCTAACCACTCTTTATTGTACCCCACGACCCC 46% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 3 transcripts: ENSMUST00000160340.8 ENSMUST00000161302.8 ENSMUST00000162278.8 |
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| CDS GCA 72 bp | GCTCCTTGGGGTCCTCAGTGCAAGATGGAGAGTTCTTaGAGATGTGTGACCGAGCAGGTTGTCCCAGGGCAC | + |
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Preference number: 6 (lower is better) Translates to: APWGPQCKMESS*RCVTEQVVPGH Trigger: GTGCCCTGGGACAACCTGCTCGGTCACACATCTGCAAGAACTCTCCATCTTGCACTGAGGACCCCAAGGAGC 58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000160340.8 |
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| CDS GCA 72 bp | TCCCCTGCCTTCCTGGGAAGAACGTGGACATGTACATaGTTCACAGTCTGCCCAGCTTCAGGACCATCTTGC | + |
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Preference number: 6 (lower is better) Translates to: SPAFLGRTWTCT*FTVCPASGPSC Trigger: GCAAGATGGTCCTGAAGCTGGGCAGACTGTGAAGCATGTACATGTCCACGTTCTTCCCAGGAAGGCAGGGGA 56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 5 transcripts: ENSMUST00000160340.8 ENSMUST00000161302.8 ENSMUST00000161895.8 ENSMUST00000162278.8 ENSMUST00000179394.8 |
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| CDS TCA 72 bp | GTCCTCAGTGCAAGATGGAGAGTTCTTGCAGATGTGTaGCCGAGCAGGTTGTCCCAGGGCACCTTCAGATTA | + |
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Preference number: 6 (lower is better) Translates to: VLSARWRVLADV*PSRLSQGTFRL Trigger: TAATCTGAAGGTGCCCTGGGACAACCTGCTCGGTCACACATCTGCAAGAACTCTCCATCTTGCACTGAGGAC 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000160340.8 |
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| CDS GCA 72 bp | CATGGTCTCACAGTAAAAGCTCCTTGGGGTCCTCAGTaGAAGATGGAGAGTTCTTGCAGATGTGTGACCGAG | + |
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Preference number: 6 (lower is better) Translates to: HGLTVKAPWGPQ*KMESSCRCVTE Trigger: CTCGGTCACACATCTGCAAGAACTCTCCATCTTGCACTGAGGACCCCAAGGAGCTTTTACTGTGAGACCATG 51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000160340.8 |
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| CDS GCA 72 bp | CTCATCATAGATGTTGTCATTCCGGGGGAAGTCCCCTaGCTTCCTGGGAAGAACGTGGACATGTACATGCTT | + |
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Preference number: 6 (lower is better) Translates to: LIIDVVIPGEVP*LPGKNVDMYML Trigger: AAGCATGTACATGTCCACGTTCTTCCCAGGAAGGCAGGGGACTTCCCCCGGAATGACAACATCTATGATGAG 51% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 5 transcripts: ENSMUST00000160340.8 ENSMUST00000161302.8 ENSMUST00000161895.8 ENSMUST00000162278.8 ENSMUST00000179394.8 |
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| CDS TCA 72 bp | TGCTTCTCCACCACTGTCCCAACTCTCTGGGTCACTTaGAACAAATCGGCCACTTCATCAGGATGTAGGTCA | + |
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Preference number: 6 (lower is better) Translates to: CFSTTVPTLWVT*NKSATSSGCRS Trigger: TGACCTACATCCTGATGAAGTGGCCGATTTGTTTCAAGTGACCCAGAGAGTTGGGACAGTGGTGGAGAAGCA 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 6 transcripts: ENSMUST00000160340.8 ENSMUST00000161302.8 ENSMUST00000161895.8 ENSMUST00000162278.8 ENSMUST00000162817.3 ENSMUST00000179394.8 |
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| CDS CAA 90 bp | GGTACAACGGGTTTCCTATTCACCAGGGCGAAGGACAGTTCAGTTTaGAGAAAAACCACAGAGGGCTTGATGAGATGTTGGCCAAATCTA | + |
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Preference number: 6 (lower is better) Translates to: GTTGFLFTRAKDSSV*RKTTEGLMRCWPNL Trigger: TAGATTTGGCCAACATCTCATCAAGCCCTCTGTGGTTTTTCTCAAAACTGAACTGTCCTTCGCCCTGGTGAATAGGAAACCCGTTGTACC 47% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 7 transcripts: ENSMUST00000160340.8 ENSMUST00000160956.2 ENSMUST00000161302.8 ENSMUST00000161895.8 ENSMUST00000162278.8 ENSMUST00000162817.3 ENSMUST00000179394.8 |
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| CDS CAA 72 bp | AATACTATCTTGAAGGCACCAACGTCTTGCATTTGGTaGCACTGTGGGGAGGTATTCCAAAGTAGGCTGAGC | + |
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Preference number: 6 (lower is better) Translates to: NTILKAPTSCIW*HCGEVFQSRLS Trigger: GCTCAGCCTACTTTGGAATACCTCCCCACAGTGCAACCAAATGCAAGACGTTGGTGCCTTCAAGATAGTATT 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000160340.8 |
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