Pregenerated sensors for FGFR1OP2 (Mus musculus)
Ensembl gene IDs: ENSMUSG00000040242Ensembl transcript IDs: ENSMUST00000037836.12, ENSMUST00000058245.5, ENSMUST00000067404.13, ENSMUST00000111663.9
Found 75 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR TCA 90 bp | AAGAAGCCAACAGCACTTCTGAAACTGCAGTGCTCAGCAGCACCTTaGAGACTCGCTGTTCACTCTGTGGCTCAGCGTCTCCTTTCTGAC | + |
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Preference number: 1 (lower is better) Translates to: KKPTALLKLQCSAAP*RLAVHSVAQRLLSD Trigger: GTCAGAAAGGAGACGCTGAGCCACAGAGTGAACAGCGAGTCTTCAAGGTGCTGCTGAGCACTGCAGTTTCAGAAGTGCTGTTGGCTTCTT 52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000067404.13 ENSMUST00000111663.9 |
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| 3UTR-3UTR CCA 90 bp | GGGCAGGTGAGCACCAACTCAGCAGCTTTATGTACACAAGCTATGCCAACTCTGTCGCTGTTCACTCTGTaGCTCAGCGTCTCCTTTCTG | + |
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Preference number: 2 (lower is better) Translates to: GQVSTNSAALCTQAMPTLSLFTL*LSVSFL Trigger: CAGAAAGGAGACGCTGAGCCACAGAGTGAACAGCGA...CAGAGTTGGCATAGCTTGTGTACATAAAGCTGCTGAGTTGGTGCTCACCTGCCC 52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000067404.13 ENSMUST00000111663.9 |
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| 3UTR-3UTR TCA 90 bp | GCAGGTGAGCACCAACTCAGCAGCTTTATGTACACAAGCTATGCCAACTCTGACAGCCAACAGCACTTCTaGAACTGCAGTGCTCAGCAG | + |
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Preference number: 2 (lower is better) Translates to: AGEHQLSSFMYTSYANSDSQQHF*NCSAQQ Trigger: CTGCTGAGCACTGCAGTTTCAGAAGTGCTGTTGGCT...GTCAGAGTTGGCATAGCTTGTGTACATAAAGCTGCTGAGTTGGTGCTCACCTGC 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000067404.13 ENSMUST00000111663.9 |
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| 3UTR-3UTR GCA 90 bp | ACGTTTCACAATAGACCTGCTCAATACATCGATCTGACTCATCTCGTCTGTGCCGTGTCCACACTTCACTaGCAGTTTCTGAGTCACAGG | + |
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Preference number: 2 (lower is better) Translates to: TFHNRPAQYIDLTHLVCAVSTLH*QFLSHR Trigger: CCTGTGACTCAGAAACTGGCAGTGAAGTGTGGACAC...GGCACAGACGAGATGAGTCAGATCGATGTATTGAGCAGGTCTATTGTGAAACGT 48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000067404.13 ENSMUST00000111663.9 |
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| 3UTR-3UTR TCA 90 bp | ACGTTTCACAATAGACCTGCTCAATACATCGATCTGACTCATCTCGTCTGTGCCTTCACTGCCAGTTTCTaGGTCACAGGTTGTAGGAAA | + |
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Preference number: 2 (lower is better) Translates to: TFHNRPAQYIDLTHLVCAFTASF*VTGCRK Trigger: TTTCCTACAACCTGTGACTCAGAAACTGGCAGTGAA...GGCACAGACGAGATGAGTCAGATCGATGTATTGAGCAGGTCTATTGTGAAACGT 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000067404.13 ENSMUST00000111663.9 |
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| 3UTR-3UTR TCA 90 bp | ACGTTTCACAATAGACCTGCTCAATACATCGATCTGACTCATCTCGTCTGTGCCAGGTTGCAGTTGGTATaGAAGCACACTTCTGTATCC | + |
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Preference number: 2 (lower is better) Translates to: TFHNRPAQYIDLTHLVCARLQLV*KHTSVS Trigger: GGATACAGAAGTGTGCTTTCATACCAACTGCAACCT...GGCACAGACGAGATGAGTCAGATCGATGTATTGAGCAGGTCTATTGTGAAACGT 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000067404.13 ENSMUST00000111663.9 |
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| 3UTR-3UTR GCA 90 bp | AAAAGTTTAGGTTGCAGTTGGTATGAAAGCACACTTCTGTATCCTGTGGCCTTACTGCTGCCGTCTCTTTaGCAGTGTCCCTGTACATAC | + |
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Preference number: 2 (lower is better) Translates to: KSLGCSWYESTLLYPVALLLPSL*QCPCTY Trigger: GTATGTACAGGGACACTGGCAAAGAGACGGCAGCAG...TAAGGCCACAGGATACAGAAGTGTGCTTTCATACCAACTGCAACCTAAACTTTT 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000067404.13 ENSMUST00000111663.9 |
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| 3UTR-3UTR GCA 90 bp | AAAAGTTTAGGTTGCAGTTGGTATGAAAGCACACTTCTGTATCCTGTGGCCTTAGTGTCCACACTTCACTaGCAGTTTCTGAGTCACAGG | + |
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Preference number: 2 (lower is better) Translates to: KSLGCSWYESTLLYPVALVSTLH*QFLSHR Trigger: CCTGTGACTCAGAAACTGGCAGTGAAGTGTGGACAC...TAAGGCCACAGGATACAGAAGTGTGCTTTCATACCAACTGCAACCTAAACTTTT 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000067404.13 ENSMUST00000111663.9 |
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| 3UTR-3UTR CCA 90 bp | ACGTTTCACAATAGACCTGCTCAATACATCGATCTGACTCATCTCGTCTGTGCCCTAGTTTATGACCACTaGTTATACATTCTGCTGCCG | + |
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Preference number: 2 (lower is better) Translates to: TFHNRPAQYIDLTHLVCALVYDH*LYILLP Trigger: CGGCAGCAGAATGTATAACCAGTGGTCATAAACTAG...GGCACAGACGAGATGAGTCAGATCGATGTATTGAGCAGGTCTATTGTGAAACGT 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000067404.13 ENSMUST00000111663.9 |
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| 3UTR-3UTR GCA 90 bp | ACGTTTCACAATAGACCTGCTCAATACATCGATCTGACTCATCTCGTCTGTGCCCTTTCTTTCCTGAGATaGATACACTTAAGCAAGTCG | + |
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Preference number: 2 (lower is better) Translates to: TFHNRPAQYIDLTHLVCALSFLR*IHLSKS Trigger: CGACTTGCTTAAGTGTATGCATCTCAGGAAAGAAAG...GGCACAGACGAGATGAGTCAGATCGATGTATTGAGCAGGTCTATTGTGAAACGT 43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000067404.13 ENSMUST00000111663.9 |
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| 3UTR-3UTR TCA 90 bp | ACGTTTCACAATAGACCTGCTCAATACATCGATCTGACTCATCTCGTCTGTGCCTCAGACTCAGAACTTTaGTTTTTGGAACCTGTATCT | + |
|
Preference number: 2 (lower is better) Translates to: TFHNRPAQYIDLTHLVCASDSEL*FLEPVS Trigger: AGATACAGGTTCCAAAAATCAAAGTTCTGAGTCTGA...GGCACAGACGAGATGAGTCAGATCGATGTATTGAGCAGGTCTATTGTGAAACGT 42% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENSMUST00000067404.13 ENSMUST00000111663.9 |
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| 3UTR-3UTR CCA 90 bp | TCTAACTTTCTGTCTGTGCTAATTTCAGTATGGACTTCAGATACAAGTATAGTGTCGCTGTTCACTCTGTaGCTCAGCGTCTCCTTTCTG | + |
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Preference number: 2 (lower is better) Translates to: SNFLSVLISVWTSDTSIVSLFTL*LSVSFL Trigger: CAGAAAGGAGACGCTGAGCCACAGAGTGAACAGCGA...CACTATACTTGTATCTGAAGTCCATACTGAAATTAGCACAGACAGAAAGTTAGA 42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000067404.13 ENSMUST00000111663.9 |
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| 3UTR-3UTR TCA 90 bp | AAAAGTTTAGGTTGCAGTTGGTATGAAAGCACACTTCTGTATCCTGTGGCCTTACTGGGATCTAGTTTATaGCCACTGGTTATACATTCT | + |
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Preference number: 2 (lower is better) Translates to: KSLGCSWYESTLLYPVALLGSSL*PLVIHS Trigger: AGAATGTATAACCAGTGGTCATAAACTAGATCCCAG...TAAGGCCACAGGATACAGAAGTGTGCTTTCATACCAACTGCAACCTAAACTTTT 40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000067404.13 ENSMUST00000111663.9 |
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| 3UTR-3UTR TCA 90 bp | ATTACTTCTCAAATAACGTTTCACAATAGACCTGCTCAATACATCGATCTGACTATTAAGGCCTCTGCATaGGAACGGTTTAACATCTGG | + |
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Preference number: 2 (lower is better) Translates to: ITSQITFHNRPAQYIDLTIKASA*ERFNIW Trigger: CCAGATGTTAAACCGTTCTCATGCAGAGGCCTTAAT...AGTCAGATCGATGTATTGAGCAGGTCTATTGTGAAACGTTATTTGAGAAGTAAT 39% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000067404.13 ENSMUST00000111663.9 |
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| 3UTR-3UTR TCA 90 bp | TCTAACTTTCTGTCTGTGCTAATTTCAGTATGGACTTCAGATACAAGTATAGTGCTGGGATCTAGTTTATaGCCACTGGTTATACATTCT | + |
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Preference number: 2 (lower is better) Translates to: SNFLSVLISVWTSDTSIVLGSSL*PLVIHS Trigger: AGAATGTATAACCAGTGGTCATAAACTAGATCCCAG...CACTATACTTGTATCTGAAGTCCATACTGAAATTAGCACAGACAGAAAGTTAGA 37% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000067404.13 ENSMUST00000111663.9 |
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| 3UTR-3UTR GCA 90 bp | TCACTTATATATAAAATATTAAGGCCTCTGCATGAGAACGGTTTAACATCTGGGCTTTCTTTCCTGAGATaGATACACTTAAGCAAGTCG | + |
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Preference number: 2 (lower is better) Translates to: SLIYKILRPLHENGLTSGLSFLR*IHLSKS Trigger: CGACTTGCTTAAGTGTATGCATCTCAGGAAAGAAAG...CCCAGATGTTAAACCGTTCTCATGCAGAGGCCTTAATATTTTATATATAAGTGA 37% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000067404.13 ENSMUST00000111663.9 |
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| 3UTR CCA 72 bp | GCTCAGCAGCACCTTGAAGACTCGCTGTTCACTCTGTaGCTCAGCGTCTCCTTTCTGACTGTGACTGGGATC | + |
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Preference number: 3 (lower is better) Translates to: AQQHLEDSLFTL*LSVSFLTVTGI Trigger: GATCCCAGTCACAGTCAGAAAGGAGACGCTGAGCCACAGAGTGAACAGCGAGTCTTCAAGGTGCTGCTGAGC 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000067404.13 ENSMUST00000111663.9 |
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| 3UTR TCA 72 bp | GAACTGCCTTTGATGAGGGCCGAGCAAATGGGCAGGTaGGCACCAACTCAGCAGCTTTATGTACACAAGCTA | + |
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Preference number: 3 (lower is better) Translates to: ELPLMRAEQMGR*APTQQLYVHKL Trigger: TAGCTTGTGTACATAAAGCTGCTGAGTTGGTGCTCACCTGCCCATTTGCTCGGCCCTCATCAAAGGCAGTTC 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000067404.13 ENSMUST00000111663.9 |
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| 3UTR-3UTR CAA 90 bp | ACGTTTCACAATAGACCTGCTCAATACATCGATCTGACTCATCTCGTCTGTGCCGTGCTCAGCAGCACCTaGAAGACTCGCTGTTCACTC | + |
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Preference number: 3 (lower is better) Translates to: TFHNRPAQYIDLTHLVCAVLSST*KTRCSL Trigger: GAGTGAACAGCGAGTCTTCAAGGTGCTGCTGAGCAC...GGCACAGACGAGATGAGTCAGATCGATGTATTGAGCAGGTCTATTGTGAAACGT 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000067404.13 ENSMUST00000111663.9 |
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| 3UTR TCA 72 bp | ACAATCCCTTTGTGTCCACACTTCACTGCCAGTTTCTaGGTCACAGGTTGTAGGAAAAACCTCACAGGTTAT | + |
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Preference number: 3 (lower is better) Translates to: TIPLCPHFTASF*VTGCRKNLTGY Trigger: ATAACCTGTGAGGTTTTTCCTACAACCTGTGACTCAGAAACTGGCAGTGAAGTGTGGACACAAAGGGATTGT 44% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENSMUST00000067404.13 ENSMUST00000111663.9 |
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| 3UTR-3UTR CAA 90 bp | ATTACTTCTCAAATAACGTTTCACAATAGACCTGCTCAATACATCGATCTGACTGTGCTCAGCAGCACCTaGAAGACTCGCTGTTCACTC | + |
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Preference number: 3 (lower is better) Translates to: ITSQITFHNRPAQYIDLTVLSST*KTRCSL Trigger: GAGTGAACAGCGAGTCTTCAAGGTGCTGCTGAGCAC...AGTCAGATCGATGTATTGAGCAGGTCTATTGTGAAACGTTATTTGAGAAGTAAT 43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000067404.13 ENSMUST00000111663.9 |
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| 3UTR-3UTR CAA 90 bp | ATTACTTCTCAAATAACGTTTCACAATAGACCTGCTCAATACATCGATCTGACTCAAAGCACAATCCCTTaGTGTCCACACTTCACTGCC | + |
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Preference number: 3 (lower is better) Translates to: ITSQITFHNRPAQYIDLTQSTIP*CPHFTA Trigger: GGCAGTGAAGTGTGGACACAAAGGGATTGTGCTTTG...AGTCAGATCGATGTATTGAGCAGGTCTATTGTGAAACGTTATTTGAGAAGTAAT 41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000067404.13 ENSMUST00000111663.9 |
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| 3UTR TCA 72 bp | CTTATCACTACAGAAAAGTTTAGGTTGCAGTTGGTATaGAAGCACACTTCTGTATCCTGTGGCCTTAAGAAG | + |
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Preference number: 3 (lower is better) Translates to: LITTEKFRLQLV*KHTSVSCGLKK Trigger: CTTCTTAAGGCCACAGGATACAGAAGTGTGCTTTCATACCAACTGCAACCTAAACTTTTCTGTAGTGATAAG 40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000067404.13 ENSMUST00000111663.9 |
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| 3UTR-3UTR CAA 90 bp | TCTAACTTTCTGTCTGTGCTAATTTCAGTATGGACTTCAGATACAAGTATAGTGGAAGAACCAGGTTCATaGTTAACAGAGAACCAAAAC | + |
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Preference number: 3 (lower is better) Translates to: SNFLSVLISVWTSDTSIVEEPGS*LTENQN Trigger: GTTTTGGTTCTCTGTTAACAATGAACCTGGTTCTTC...CACTATACTTGTATCTGAAGTCCATACTGAAATTAGCACAGACAGAAAGTTAGA 37% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000067404.13 ENSMUST00000111663.9 |
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| 3UTR-3UTR CAA 90 bp | ATTACTTCTCAAATAACGTTTCACAATAGACCTGCTCAATACATCGATCTGACTGAAGAACCAGGTTCATaGTTAACAGAGAACCAAAAC | + |
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Preference number: 3 (lower is better) Translates to: ITSQITFHNRPAQYIDLTEEPGS*LTENQN Trigger: GTTTTGGTTCTCTGTTAACAATGAACCTGGTTCTTC...AGTCAGATCGATGTATTGAGCAGGTCTATTGTGAAACGTTATTTGAGAAGTAAT 37% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000067404.13 ENSMUST00000111663.9 |
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| 3UTR-3UTR CAA 90 bp | TCTAACTTTCTGTCTGTGCTAATTTCAGTATGGACTTCAGATACAAGTATAGTGCTCAGACTCAGAACTTaGATTTTTGGAACCTGTATC | + |
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Preference number: 3 (lower is better) Translates to: SNFLSVLISVWTSDTSIVLRLRT*IFGTCI Trigger: GATACAGGTTCCAAAAATCAAAGTTCTGAGTCTGAG...CACTATACTTGTATCTGAAGTCCATACTGAAATTAGCACAGACAGAAAGTTAGA 37% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENSMUST00000067404.13 ENSMUST00000111663.9 |
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| 3UTR GCA 72 bp | AATCTTTTATTCTTATCACTACAGAAAAGTTTAGGTTaGAGTTGGTATGAAAGCACACTTCTGTATCCTGTG | + |
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Preference number: 3 (lower is better) Translates to: NLLFLSLQKSLG*SWYESTLLYPV Trigger: CACAGGATACAGAAGTGTGCTTTCATACCAACTGCAACCTAAACTTTTCTGTAGTGATAAGAATAAAAGATT 35% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000067404.13 ENSMUST00000111663.9 |
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| 3UTR CCA 72 bp | GAAAAGTCTAACTTTCTGTCTGTGCTAATTTCAGTATaGACTTCAGATACAAGTATAGTGTATTTTCAGCCA | + |
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Preference number: 3 (lower is better) Translates to: EKSNFLSVLISV*TSDTSIVYFQP Trigger: TGGCTGAAAATACACTATACTTGTATCTGAAGTCCATACTGAAATTAGCACAGACAGAAAGTTAGACTTTTC 35% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000067404.13 ENSMUST00000111663.9 |
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| CDS-3UTR GCA 90 bp | GCAGGTGAGCACCAACTCAGCAGCTTTATGTACACAAGCTATGCCAACTCTGACTCCAGGGCAGACTGGTaGTCTTCCAGGGATGTCCGC | + |
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Preference number: 4 (lower is better) Translates to: AGEHQLSSFMYTSYANSDSRADW*SSRDVR Trigger: GCGGACATCCCTGGAAGAGCACCAGTCTGCCCTGGA...GTCAGAGTTGGCATAGCTTGTGTACATAAAGCTGCTGAGTTGGTGCTCACCTGC 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000067404.13 ENSMUST00000111663.9 |
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| CDS-3UTR GCA 90 bp | TATGACCACTGGTTATACATTCTGCTGCCGTCTCTTTGCCAGTGTCCCTGTACATCCAGGGCAGACTGGTaGTCTTCCAGGGATGTCCGC | + |
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Preference number: 4 (lower is better) Translates to: YDHWLYILLPSLCQCPCTSRADW*SSRDVR Trigger: GCGGACATCCCTGGAAGAGCACCAGTCTGCCCTGGA...TGTACAGGGACACTGGCAAAGAGACGGCAGCAGAATGTATAACCAGTGGTCATA 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000067404.13 ENSMUST00000111663.9 |
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| CDS-3UTR CCA 90 bp | GGGCAGGTGAGCACCAACTCAGCAGCTTTATGTACACAAGCTATGCCAACTCTGAGTTCCAGGGCAGACTaGTGCTCTTCCAGGGATGTC | + |
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Preference number: 4 (lower is better) Translates to: GQVSTNSAALCTQAMPTLSSRAD*CSSRDV Trigger: GACATCCCTGGAAGAGCACCAGTCTGCCCTGGAACT...CAGAGTTGGCATAGCTTGTGTACATAAAGCTGCTGAGTTGGTGCTCACCTGCCC 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000067404.13 ENSMUST00000111663.9 |
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| CDS-3UTR TCA 90 bp | TATGACCACTGGTTATACATTCTGCTGCCGTCTCTTTGCCAGTGTCCCTGTACACTCTCCAGTCCGTGCTaGGGTGCTTCAAGGATGTGC | + |
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Preference number: 4 (lower is better) Translates to: YDHWLYILLPSLCQCPCTLSSPC*GASRMC Trigger: GCACATCCTTGAAGCACCTCAGCACGGACTGGAGAG...TGTACAGGGACACTGGCAAAGAGACGGCAGCAGAATGTATAACCAGTGGTCATA 52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000111663.9 |
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| CDS-3UTR TCA 90 bp | ACCACTGGTTATACATTCTGCTGCCGTCTCTTTGCCAGTGTCCCTGTACATACCCAGTGGTCTGCTCGATaGGAGACTCTGCTGCATCAT | + |
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Preference number: 4 (lower is better) Translates to: TTGYTFCCRLFASVPVHTQWSAR*ETLLHH Trigger: ATGATGCAGCAGAGTCTCTCATCGAGCAGACCACTG...GGTATGTACAGGGACACTGGCAAAGAGACGGCAGCAGAATGTATAACCAGTGGT 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000067404.13 ENSMUST00000111663.9 |
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| CDS-3UTR TCA 90 bp | TATGACCACTGGTTATACATTCTGCTGCCGTCTCTTTGCCAGTGTCCCTGTACACAGTGGTCTGCTCGATaGGAGACTCTGCTGCATCAT | + |
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Preference number: 4 (lower is better) Translates to: YDHWLYILLPSLCQCPCTQWSAR*ETLLHH Trigger: ATGATGCAGCAGAGTCTCTCATCGAGCAGACCACTG...TGTACAGGGACACTGGCAAAGAGACGGCAGCAGAATGTATAACCAGTGGTCATA 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000067404.13 ENSMUST00000111663.9 |
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| CDS-3UTR TCA 90 bp | GCAGGTGAGCACCAACTCAGCAGCTTTATGTACACAAGCTATGCCAACTCTGACCTGCTGCCATCTCGGTaGTTTGGTCAACATGTGCTT | + |
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Preference number: 4 (lower is better) Translates to: AGEHQLSSFMYTSYANSDLLPSR*FGQHVL Trigger: AAGCACATGTTGACCAAATCACCGAGATGGCAGCAG...GTCAGAGTTGGCATAGCTTGTGTACATAAAGCTGCTGAGTTGGTGCTCACCTGC 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000067404.13 ENSMUST00000111663.9 |
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| CDS-3UTR GCA 90 bp | ACCACTGGTTATACATTCTGCTGCCGTCTCTTTGCCAGTGTCCCTGTACATACCAAGGATGTGCCGAGATaGATCCAGGAAGAATCCTTC | + |
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Preference number: 4 (lower is better) Translates to: TTGYTFCCRLFASVPVHTKDVPR*IQEESF Trigger: GAAGGATTCTTCCTGGATGCATCTCGGCACATCCTT...GGTATGTACAGGGACACTGGCAAAGAGACGGCAGCAGAATGTATAACCAGTGGT 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000111663.9 |
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| CDS-3UTR TCA 90 bp | ACGTTTCACAATAGACCTGCTCAATACATCGATCTGACTCATCTCGTCTGTGCCCTGCTGCCATCTCGGTaGTTTGGTCAACATGTGCTT | + |
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Preference number: 4 (lower is better) Translates to: TFHNRPAQYIDLTHLVCALLPSR*FGQHVL Trigger: AAGCACATGTTGACCAAATCACCGAGATGGCAGCAG...GGCACAGACGAGATGAGTCAGATCGATGTATTGAGCAGGTCTATTGTGAAACGT 48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000067404.13 ENSMUST00000111663.9 |
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| CDS-3UTR GCA 90 bp | GCAGGTGAGCACCAACTCAGCAGCTTTATGTACACAAGCTATGCCAACTCTGACGATGAGAGACTCTGCTaGATCATCATGATCTCTCAA | + |
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Preference number: 4 (lower is better) Translates to: AGEHQLSSFMYTSYANSDDERLC*IIMISQ Trigger: TTGAGAGATCATGATGATGCAGCAGAGTCTCTCATC...GTCAGAGTTGGCATAGCTTGTGTACATAAAGCTGCTGAGTTGGTGCTCACCTGC 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000067404.13 ENSMUST00000111663.9 |
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| CDS-3UTR GCA 90 bp | TATGACCACTGGTTATACATTCTGCTGCCGTCTCTTTGCCAGTGTCCCTGTACACTCGATGAGAGACTCTaGTGCATCATCATGATCTCT | + |
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Preference number: 4 (lower is better) Translates to: YDHWLYILLPSLCQCPCTLDERL*CIIMIS Trigger: AGAGATCATGATGATGCAGCAGAGTCTCTCATCGAG...TGTACAGGGACACTGGCAAAGAGACGGCAGCAGAATGTATAACCAGTGGTCATA 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000067404.13 ENSMUST00000111663.9 |
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| CDS-3UTR GCA 90 bp | ACGTTTCACAATAGACCTGCTCAATACATCGATCTGACTCATCTCGTCTGTGCCTCTGCTCTCGGTACTTaGTCATTATCAGTTCCAGGG | + |
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Preference number: 4 (lower is better) Translates to: TFHNRPAQYIDLTHLVCASALGT*SLSVPG Trigger: CCCTGGAACTGATAATGAGCAAGTACCGAGAGCAGA...GGCACAGACGAGATGAGTCAGATCGATGTATTGAGCAGGTCTATTGTGAAACGT 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000067404.13 ENSMUST00000111663.9 |
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| CDS-3UTR GCA 90 bp | TATGACCACTGGTTATACATTCTGCTGCCGTCTCTTTGCCAGTGTCCCTGTACAAGCAGTCTGAACATCTaGTCTCGGTACTTGCTCATT | + |
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Preference number: 4 (lower is better) Translates to: YDHWLYILLPSLCQCPCTSSLNI*SRYLLI Trigger: AATGAGCAAGTACCGAGAGCAGATGTTCAGACTGCT...TGTACAGGGACACTGGCAAAGAGACGGCAGCAGAATGTATAACCAGTGGTCATA 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000067404.13 ENSMUST00000111663.9 |
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| CDS-3UTR GCA 90 bp | GCAGGTGAGCACCAACTCAGCAGCTTTATGTACACAAGCTATGCCAACTCTGACTTTTCTCATTACTGCTaGCATCTCGGTGATTTGGTC | + |
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Preference number: 4 (lower is better) Translates to: AGEHQLSSFMYTSYANSDFSHYC*HLGDLV Trigger: GACCAAATCACCGAGATGGCAGCAGTAATGAGAAAA...GTCAGAGTTGGCATAGCTTGTGTACATAAAGCTGCTGAGTTGGTGCTCACCTGC 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000067404.13 ENSMUST00000111663.9 |
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| CDS-3UTR CCA 90 bp | AAAAGTTTAGGTTGCAGTTGGTATGAAAGCACACTTCTGTATCCTGTGGCCTTAAGTTCCAGGGCAGACTaGTGCTCTTCCAGGGATGTC | + |
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Preference number: 4 (lower is better) Translates to: KSLGCSWYESTLLYPVALSSRAD*CSSRDV Trigger: GACATCCCTGGAAGAGCACCAGTCTGCCCTGGAACT...TAAGGCCACAGGATACAGAAGTGTGCTTTCATACCAACTGCAACCTAAACTTTT 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000067404.13 ENSMUST00000111663.9 |
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| CDS-3UTR CCA 90 bp | ACGTTTCACAATAGACCTGCTCAATACATCGATCTGACTCATCTCGTCTGTGCCGCCATCTCGGTGATTTaGTCAACATGTGCTTGCAAC | + |
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Preference number: 4 (lower is better) Translates to: TFHNRPAQYIDLTHLVCAAISVI*STCACN Trigger: GTTGCAAGCACATGTTGACCAAATCACCGAGATGGC...GGCACAGACGAGATGAGTCAGATCGATGTATTGAGCAGGTCTATTGTGAAACGT 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000067404.13 ENSMUST00000111663.9 |
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| CDS-3UTR TCA 90 bp | ACCACTGGTTATACATTCTGCTGCCGTCTCTTTGCCAGTGTCCCTGTACATACCTTTTCTTGTTCAAGTTaGAATATCCGCTCCTGTTCC | + |
|
Preference number: 4 (lower is better) Translates to: TTGYTFCCRLFASVPVHTFSCSS*NIRSCS Trigger: GGAACAGGAGCGGATATTTCAACTTGAACAAGAAAA...GGTATGTACAGGGACACTGGCAAAGAGACGGCAGCAGAATGTATAACCAGTGGT 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000067404.13 ENSMUST00000111663.9 |
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| CDS-3UTR TCA 90 bp | GCAGGTGAGCACCAACTCAGCAGCTTTATGTACACAAGCTATGCCAACTCTGACTTTTCTTGTTCAAGTTaGAATATCCGCTCCTGTTCC | + |
|
Preference number: 4 (lower is better) Translates to: AGEHQLSSFMYTSYANSDFSCSS*NIRSCS Trigger: GGAACAGGAGCGGATATTTCAACTTGAACAAGAAAA...GTCAGAGTTGGCATAGCTTGTGTACATAAAGCTGCTGAGTTGGTGCTCACCTGC 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000067404.13 ENSMUST00000111663.9 |
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| CDS-3UTR GCA 90 bp | ACGTTTCACAATAGACCTGCTCAATACATCGATCTGACTCATCTCGTCTGTGCCGATGAGAGACTCTGCTaGATCATCATGATCTCTCAA | + |
|
Preference number: 4 (lower is better) Translates to: TFHNRPAQYIDLTHLVCADERLC*IIMISQ Trigger: TTGAGAGATCATGATGATGCAGCAGAGTCTCTCATC...GGCACAGACGAGATGAGTCAGATCGATGTATTGAGCAGGTCTATTGTGAAACGT 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000067404.13 ENSMUST00000111663.9 |
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| CDS-3UTR GCA 90 bp | AAAAGTTTAGGTTGCAGTTGGTATGAAAGCACACTTCTGTATCCTGTGGCCTTATTTAGCGTCAGCAAGTaGCTTCTCAATGGTGCAGCT | + |
|
Preference number: 4 (lower is better) Translates to: KSLGCSWYESTLLYPVALFSVSK*LLNGAA Trigger: AGCTGCACCATTGAGAAGGCACTTGCTGACGCTAAA...TAAGGCCACAGGATACAGAAGTGTGCTTTCATACCAACTGCAACCTAAACTTTT 43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000067404.13 ENSMUST00000111663.9 |
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| CDS-3UTR GCA 90 bp | ATTACTTCTCAAATAACGTTTCACAATAGACCTGCTCAATACATCGATCTGACTCAGTCCGTGCTGAGGTaGTTCAAGGATGTGCCGAGA | + |
|
Preference number: 4 (lower is better) Translates to: ITSQITFHNRPAQYIDLTQSVLR*FKDVPR Trigger: TCTCGGCACATCCTTGAAGCACCTCAGCACGGACTG...AGTCAGATCGATGTATTGAGCAGGTCTATTGTGAAACGTTATTTGAGAAGTAAT 43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000111663.9 |
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| CDS-3UTR GCA 90 bp | TCACTTATATATAAAATATTAAGGCCTCTGCATGAGAACGGTTTAACATCTGGGGGTGCTTCAAGGATGTaGCGAGATGCATCCAGGAAG | + |
|
Preference number: 4 (lower is better) Translates to: SLIYKILRPLHENGLTSGGASRM*RDASRK Trigger: CTTCCTGGATGCATCTCGGCACATCCTTGAAGCACC...CCCAGATGTTAAACCGTTCTCATGCAGAGGCCTTAATATTTTATATATAAGTGA 42% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000111663.9 |
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| CDS-3UTR GCA 90 bp | TCACTTATATATAAAATATTAAGGCCTCTGCATGAGAACGGTTTAACATCTGGGTTTAGCGTCAGCAAGTaGCTTCTCAATGGTGCAGCT | + |
|
Preference number: 4 (lower is better) Translates to: SLIYKILRPLHENGLTSGFSVSK*LLNGAA Trigger: AGCTGCACCATTGAGAAGGCACTTGCTGACGCTAAA...CCCAGATGTTAAACCGTTCTCATGCAGAGGCCTTAATATTTTATATATAAGTGA 40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000067404.13 ENSMUST00000111663.9 |
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| CDS-3UTR GCA 90 bp | TCACTTATATATAAAATATTAAGGCCTCTGCATGAGAACGGTTTAACATCTGGGTCTGCTCTCGGTACTTaGTCATTATCAGTTCCAGGG | + |
|
Preference number: 4 (lower is better) Translates to: SLIYKILRPLHENGLTSGSALGT*SLSVPG Trigger: CCCTGGAACTGATAATGAGCAAGTACCGAGAGCAGA...CCCAGATGTTAAACCGTTCTCATGCAGAGGCCTTAATATTTTATATATAAGTGA 40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000067404.13 ENSMUST00000111663.9 |
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| CDS-3UTR CCA 90 bp | TCACTTATATATAAAATATTAAGGCCTCTGCATGAGAACGGTTTAACATCTGGGGCCATCTCGGTGATTTaGTCAACATGTGCTTGCAAC | + |
|
Preference number: 4 (lower is better) Translates to: SLIYKILRPLHENGLTSGAISVI*STCACN Trigger: GTTGCAAGCACATGTTGACCAAATCACCGAGATGGC...CCCAGATGTTAAACCGTTCTCATGCAGAGGCCTTAATATTTTATATATAAGTGA 40% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000067404.13 ENSMUST00000111663.9 |
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| CDS-3UTR GCA 90 bp | TCACTTATATATAAAATATTAAGGCCTCTGCATGAGAACGGTTTAACATCTGGGTGGTCAACATGTGCTTaGAACTCCTTTGAGTGTTGC | + |
|
Preference number: 4 (lower is better) Translates to: SLIYKILRPLHENGLTSGWSTCA*NSFECC Trigger: GCAACACTCAAAGGAGTTGCAAGCACATGTTGACCA...CCCAGATGTTAAACCGTTCTCATGCAGAGGCCTTAATATTTTATATATAAGTGA 39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000067404.13 |
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| CDS-3UTR GCA 90 bp | ATTACTTCTCAAATAACGTTTCACAATAGACCTGCTCAATACATCGATCTGACTTTTTCTCATTACTGCTaGCATCTCGGTGATTTGGTC | + |
|
Preference number: 4 (lower is better) Translates to: ITSQITFHNRPAQYIDLTFSHYC*HLGDLV Trigger: GACCAAATCACCGAGATGGCAGCAGTAATGAGAAAA...AGTCAGATCGATGTATTGAGCAGGTCTATTGTGAAACGTTATTTGAGAAGTAAT 38% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENSMUST00000067404.13 ENSMUST00000111663.9 |
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| CDS-3UTR GCA 90 bp | TCTAACTTTCTGTCTGTGCTAATTTCAGTATGGACTTCAGATACAAGTATAGTGGATTTGGTCAACATGTaGTTGCAACTCATTCTGATT | + |
|
Preference number: 4 (lower is better) Translates to: SNFLSVLISVWTSDTSIVDLVNM*LQLILI Trigger: AATCAGAATGAGTTGCAAGCACATGTTGACCAAATC...CACTATACTTGTATCTGAAGTCCATACTGAAATTAGCACAGACAGAAAGTTAGA 36% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000111663.9 |
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| CDS GCA 90 bp | CCTCCTCTCCAGTCCGTGCTGAGGTGCTTCAAGGATGTGCCGAGATaGATCCAGGAAGAATCCTTCGCAGCTGTTACGATGTACCATGTC | + |
|
Preference number: 5 (lower is better) Translates to: PPLQSVLRCFKDVPR*IQEESFAAVTMYHV Trigger: GACATGGTACATCGTAACAGCTGCGAAGGATTCTTCCTGGATGCATCTCGGCACATCCTTGAAGCACCTCAGCACGGACTGGAGAGGAGG 54% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000037836.12 ENSMUST00000058245.5 ENSMUST00000111663.9 |
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| CDS GCA 90 bp | ATTCTGATTTGCCTCCAAGTGCCTCCTCTCCAGTCCGTGCTGAGGTaGTTCAAGGATGTGCCGAGATGCATCCAGGAAGAATCCTTCGCA | + |
|
Preference number: 5 (lower is better) Translates to: ILICLQVPPLQSVLR*FKDVPRCIQEESFA Trigger: TGCGAAGGATTCTTCCTGGATGCATCTCGGCACATCCTTGAAGCACCTCAGCACGGACTGGAGAGGAGGCACTTGGAGGCAAATCAGAAT 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000037836.12 ENSMUST00000058245.5 ENSMUST00000111663.9 |
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| CDS-3UTR CAA 90 bp | GCAGGTGAGCACCAACTCAGCAGCTTTATGTACACAAGCTATGCCAACTCTGACATCCGCTCCTGTTCCTaGCAACCCTGCTGCTCGTCA | + |
|
Preference number: 5 (lower is better) Translates to: AGEHQLSSFMYTSYANSDIRSCS*QPCCSS Trigger: TGACGAGCAGCAGGGTTGCAAGGAACAGGAGCGGAT...GTCAGAGTTGGCATAGCTTGTGTACATAAAGCTGCTGAGTTGGTGCTCACCTGC 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000067404.13 ENSMUST00000111663.9 |
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| CDS-3UTR CAA 90 bp | GCAGGTGAGCACCAACTCAGCAGCTTTATGTACACAAGCTATGCCAACTCTGACCCTGGGTCATCTTTCTaGCTGGCCATGAGCAGTCTG | + |
|
Preference number: 5 (lower is better) Translates to: AGEHQLSSFMYTSYANSDPGSSF*LAMSSL Trigger: CAGACTGCTCATGGCCAGCAAGAAAGATGACCCAGG...GTCAGAGTTGGCATAGCTTGTGTACATAAAGCTGCTGAGTTGGTGCTCACCTGC 52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000067404.13 ENSMUST00000111663.9 |
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| CDS-3UTR CAA 90 bp | ACCACTGGTTATACATTCTGCTGCCGTCTCTTTGCCAGTGTCCCTGTACATACCCCTGGGTCATCTTTCTaGCTGGCCATGAGCAGTCTG | + |
|
Preference number: 5 (lower is better) Translates to: TTGYTFCCRLFASVPVHTPGSSF*LAMSSL Trigger: CAGACTGCTCATGGCCAGCAAGAAAGATGACCCAGG...GGTATGTACAGGGACACTGGCAAAGAGACGGCAGCAGAATGTATAACCAGTGGT 52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000067404.13 ENSMUST00000111663.9 |
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| CDS-3UTR CAA 90 bp | ACCACTGGTTATACATTCTGCTGCCGTCTCTTTGCCAGTGTCCCTGTACATACCGCAACTCATTCTGATTaGCCTCCAAGTGCCTCCTCT | + |
|
Preference number: 5 (lower is better) Translates to: TTGYTFCCRLFASVPVHTATHSD*PPSASS Trigger: AGAGGAGGCACTTGGAGGCAAATCAGAATGAGTTGC...GGTATGTACAGGGACACTGGCAAAGAGACGGCAGCAGAATGTATAACCAGTGGT 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000111663.9 |
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| CDS-3UTR CAA 90 bp | GCAGGTGAGCACCAACTCAGCAGCTTTATGTACACAAGCTATGCCAACTCTGACTGCCATCTCGGTGATTaGGTCAACATGTGCTTGCAA | + |
|
Preference number: 5 (lower is better) Translates to: AGEHQLSSFMYTSYANSDCHLGD*VNMCLQ Trigger: TTGCAAGCACATGTTGACCAAATCACCGAGATGGCA...GTCAGAGTTGGCATAGCTTGTGTACATAAAGCTGCTGAGTTGGTGCTCACCTGC 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000067404.13 ENSMUST00000111663.9 |
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| CDS-3UTR CAA 90 bp | GCAGGTGAGCACCAACTCAGCAGCTTTATGTACACAAGCTATGCCAACTCTGACGTACCATGTCAATCTTaGAGTGTTGCTCTTTTAACT | + |
|
Preference number: 5 (lower is better) Translates to: AGEHQLSSFMYTSYANSDVPCQS*SVALLT Trigger: AGTTAAAAGAGCAACACTCAAAGATTGACATGGTAC...GTCAGAGTTGGCATAGCTTGTGTACATAAAGCTGCTGAGTTGGTGCTCACCTGC 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000111663.9 |
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| CDS-3UTR CAA 90 bp | TCACTTATATATAAAATATTAAGGCCTCTGCATGAGAACGGTTTAACATCTGGGATCCGCTCCTGTTCCTaGCAACCCTGCTGCTCGTCA | + |
|
Preference number: 5 (lower is better) Translates to: SLIYKILRPLHENGLTSGIRSCS*QPCCSS Trigger: TGACGAGCAGCAGGGTTGCAAGGAACAGGAGCGGAT...CCCAGATGTTAAACCGTTCTCATGCAGAGGCCTTAATATTTTATATATAAGTGA 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000067404.13 ENSMUST00000111663.9 |
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| CDS-3UTR CAA 90 bp | GCAGGTGAGCACCAACTCAGCAGCTTTATGTACACAAGCTATGCCAACTCTGACATTTTCTTGTTCAAGTaGAAATATCCGCTCCTGTTC | + |
|
Preference number: 5 (lower is better) Translates to: AGEHQLSSFMYTSYANSDIFLFK*KYPLLF Trigger: GAACAGGAGCGGATATTTCAACTTGAACAAGAAAAT...GTCAGAGTTGGCATAGCTTGTGTACATAAAGCTGCTGAGTTGGTGCTCACCTGC 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000067404.13 ENSMUST00000111663.9 |
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| CDS-3UTR CAA 90 bp | ACGTTTCACAATAGACCTGCTCAATACATCGATCTGACTCATCTCGTCTGTGCCATTTTCTTGTTCAAGTaGAAATATCCGCTCCTGTTC | + |
|
Preference number: 5 (lower is better) Translates to: TFHNRPAQYIDLTHLVCAIFLFK*KYPLLF Trigger: GAACAGGAGCGGATATTTCAACTTGAACAAGAAAAT...GGCACAGACGAGATGAGTCAGATCGATGTATTGAGCAGGTCTATTGTGAAACGT 42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000067404.13 ENSMUST00000111663.9 |
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| CDS-3UTR CAA 90 bp | TCACTTATATATAAAATATTAAGGCCTCTGCATGAGAACGGTTTAACATCTGGGTGCCATCTCGGTGATTaGGTCAACATGTGCTTGCAA | + |
|
Preference number: 5 (lower is better) Translates to: SLIYKILRPLHENGLTSGCHLGD*VNMCLQ Trigger: TTGCAAGCACATGTTGACCAAATCACCGAGATGGCA...CCCAGATGTTAAACCGTTCTCATGCAGAGGCCTTAATATTTTATATATAAGTGA 40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000067404.13 ENSMUST00000111663.9 |
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| CDS-3UTR CAA 90 bp | AAAAGTTTAGGTTGCAGTTGGTATGAAAGCACACTTCTGTATCCTGTGGCCTTAGATGTCCGCAGTTCTTaGTTTTCTTGTTGTAATTCT | + |
|
Preference number: 5 (lower is better) Translates to: KSLGCSWYESTLLYPVALDVRSS*FSCCNS Trigger: AGAATTACAACAAGAAAACAAAGAACTGCGGACATC...TAAGGCCACAGGATACAGAAGTGTGCTTTCATACCAACTGCAACCTAAACTTTT 39% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000067404.13 ENSMUST00000111663.9 |
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| CDS-3UTR CAA 90 bp | ATTACTTCTCAAATAACGTTTCACAATAGACCTGCTCAATACATCGATCTGACTGTGCTTGCAACTCCTTaGAGTGTTGCTCTTTTAACT | + |
|
Preference number: 5 (lower is better) Translates to: ITSQITFHNRPAQYIDLTVLATP*SVALLT Trigger: AGTTAAAAGAGCAACACTCAAAGGAGTTGCAAGCAC...AGTCAGATCGATGTATTGAGCAGGTCTATTGTGAAACGTTATTTGAGAAGTAAT 38% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000067404.13 |
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| CDS-3UTR CAA 90 bp | ATTACTTCTCAAATAACGTTTCACAATAGACCTGCTCAATACATCGATCTGACTGATGTCCGCAGTTCTTaGTTTTCTTGTTGTAATTCT | + |
|
Preference number: 5 (lower is better) Translates to: ITSQITFHNRPAQYIDLTDVRSS*FSCCNS Trigger: AGAATTACAACAAGAAAACAAAGAACTGCGGACATC...AGTCAGATCGATGTATTGAGCAGGTCTATTGTGAAACGTTATTTGAGAAGTAAT 36% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000067404.13 ENSMUST00000111663.9 |
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| CDS GCA 72 bp | TGCCTCCAAGTGCCTCCTCTCCAGTCCGTGCTGAGGTaGTTCAAGGATGTGCCGAGATGCATCCAGGAAGAA | + |
|
Preference number: 6 (lower is better) Translates to: CLQVPPLQSVLR*FKDVPRCIQEE Trigger: TTCTTCCTGGATGCATCTCGGCACATCCTTGAAGCACCTCAGCACGGACTGGAGAGGAGGCACTTGGAGGCA 57% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000037836.12 ENSMUST00000058245.5 ENSMUST00000111663.9 |
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| CDS CAA 72 bp | CTGGCCATGAGCAGTCTGAACATCTGCTCTCGGTACTaGCTCATTATCAGTTCCAGGGCAGACTGGTGCTCT | + |
|
Preference number: 6 (lower is better) Translates to: LAMSSLNICSRY*LIISSRADWCS Trigger: AGAGCACCAGTCTGCCCTGGAACTGATAATGAGCAAGTACCGAGAGCAGATGTTCAGACTGCTCATGGCCAG 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 4 transcripts: ENSMUST00000037836.12 ENSMUST00000058245.5 ENSMUST00000067404.13 ENSMUST00000111663.9 |
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| CDS CAA 90 bp | TCTTTCTTGCTGGCCATGAGCAGTCTGAACATCTGCTCTCGGTACTaGCTCATTATCAGTTCCAGGGCAGACTGGTGCTCTTCCAGGGAT | + |
|
Preference number: 6 (lower is better) Translates to: SFLLAMSSLNICSRY*LIISSRADWCSSRD Trigger: ATCCCTGGAAGAGCACCAGTCTGCCCTGGAACTGATAATGAGCAAGTACCGAGAGCAGATGTTCAGACTGCTCATGGCCAGCAAGAAAGA 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 4 transcripts: ENSMUST00000037836.12 ENSMUST00000058245.5 ENSMUST00000067404.13 ENSMUST00000111663.9 |
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| CDS GCA 72 bp | GATTTGGTCAACATGTGCTTGCAACTCATTCTGATTTaGCTCCAAGTGCCTCCTCTCCAGTCCGTGCTGAGG | + |
|
Preference number: 6 (lower is better) Translates to: DLVNMCLQLILI*LQVPPLQSVLR Trigger: CCTCAGCACGGACTGGAGAGGAGGCACTTGGAGGCAAATCAGAATGAGTTGCAAGCACATGTTGACCAAATC 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000111663.9 |
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