Pregenerated sensors for FGF4 (Mus musculus)
Ensembl gene IDs: ENSMUSG00000050917Ensembl transcript IDs: ENSMUST00000060336.5
Found 80 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR GCA 90 bp | GACGGCAGAATGCTCCCGATCGGGAACGCTCAGGGTCCTTCTCACTaGCTCAGAGGTCCCAGGCAGGCCTTTCCAGTTACAGGCCAGGCA | + |
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Preference number: 1 (lower is better) Translates to: DGRMLPIGNAQGPSH*LRGPRQAFPVTGQA Trigger: TGCCTGGCCTGTAACTGGAAAGGCCTGCCTGGGACCTCTGAGGCAGTGAGAAGGACCCTGAGCGTTCCCGATCGGGAGCATTCTGCCGTC 62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000060336.5 |
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| 3UTR GCA 90 bp | ACAGGGTTCATACCAAAGGAAGCAGAGGGAGCGGCGACGGCAGAATaGTCCCGATCGGGAACGCTCAGGGTCCTTCTCACTGCCTCAGAG | + |
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Preference number: 1 (lower is better) Translates to: TGFIPKEAEGAATAE*SRSGTLRVLLTASE Trigger: CTCTGAGGCAGTGAGAAGGACCCTGAGCGTTCCCGATCGGGAGCATTCTGCCGTCGCCGCTCCCTCTGCTTCCTTTGGTATGAACCCTGT 60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000060336.5 |
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| 3UTR GCA 90 bp | ATTCCTTCACCTTGGGGCAGCACCGGAATTCGGACTCCTGCAGTCTaGCTGCATAAAGGCTGCCTGGGGTGGGAAAGGGCAGCTCACCCT | + |
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Preference number: 1 (lower is better) Translates to: IPSPWGSTGIRTPAV*LHKGCLGWERAAHP Trigger: AGGGTGAGCTGCCCTTTCCCACCCCAGGCAGCCTTTATGCAGGCAGACTGCAGGAGTCCGAATTCCGGTGCTGCCCCAAGGTGAAGGAAT 60% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000060336.5 |
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| 3UTR GCA 90 bp | CTTCACCTTGGGGCAGCACCGGAATTCGGACTCCTGCAGTCTGCCTaGATAAAGGCTGCCTGGGGTGGGAAAGGGCAGCTCACCCTTAAA | + |
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Preference number: 1 (lower is better) Translates to: LHLGAAPEFGLLQSA*IKAAWGGKGQLTLK Trigger: TTTAAGGGTGAGCTGCCCTTTCCCACCCCAGGCAGCCTTTATGCAGGCAGACTGCAGGAGTCCGAATTCCGGTGCTGCCCCAAGGTGAAG 59% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000060336.5 |
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| 3UTR GCA 90 bp | CGTGACAAGGGTCCAGATACTACATGTGGAAGAGAAGCAGGCAGATaGACCCAGCAGAGCCTCCAGCTTAGTCACCAGGGTCTCAGGAAC | + |
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Preference number: 1 (lower is better) Translates to: RDKGPDTTCGREAGR*TQQSLQLSHQGLRN Trigger: GTTCCTGAGACCCTGGTGACTAAGCTGGAGGCTCTGCTGGGTGCATCTGCCTGCTTCTCTTCCACATGTAGTATCTGGACCCTTGTCACG 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000060336.5 |
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| 3UTR TCA 90 bp | TCCCAGGCAGGCCTTTCCAGTTACAGGCCAGGCACCCTTGGAAACTaGTGTCACCAAGTTTTAGAGGCACACATGAAACAGCATCACACC | + |
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Preference number: 1 (lower is better) Translates to: SQAGLSSYRPGTLGN*CHQVLEAHMKQHHT Trigger: GGTGTGATGCTGTTTCATGTGTGCCTCTAAAACTTGGTGACATCAGTTTCCAAGGGTGCCTGGCCTGTAACTGGAAAGGCCTGCCTGGGA 52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000060336.5 |
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| 3UTR TCA 90 bp | GCTGAAGAAACAGGTAATAGGTGTCAGGTAGGACCACAGCCTGCCTaGAGCAACATAGCTGCAGAGAATCCCATCAGAACAGGGCAGGTG | + |
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Preference number: 1 (lower is better) Translates to: AEETGNRCQVGPQPA*SNIAAENPIRTGQV Trigger: CACCTGCCCTGTTCTGATGGGATTCTCTGCAGCTATGTTGCTTCAGGCAGGCTGTGGTCCTACCTGACACCTATTACCTGTTTCTTCAGC 52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000060336.5 |
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| 3UTR CCA 90 bp | CACAAAATCTTATTGTCCTGTGAGCCACCAGACAGAAAGGAAGTTTaGGAGGAGCTCCCACCTCAGCTTTGGGGTGTGGCTTCTTCCATC | + |
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Preference number: 1 (lower is better) Translates to: HKILLSCEPPDRKEV*EELPPQLWGVASSI Trigger: GATGGAAGAAGCCACACCCCAAAGCTGAGGTGGGAGCTCCTCCCAAACTTCCTTTCTGTCTGGTGGCTCACAGGACAATAAGATTTTGTG 51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000060336.5 |
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| 3UTR GCA 90 bp | CCAGTCTTGCTGTCTGTAGCCTCCCATAAAGTTAATTCGGGAGGTTaGTCAGAAGTCTCCCAGCAGAGTCTTAACATCTTGGGGAGAAGC | + |
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Preference number: 1 (lower is better) Translates to: PVLLSVASHKVNSGG*SEVSQQSLNILGRS Trigger: GCTTCTCCCCAAGATGTTAAGACTCTGCTGGGAGACTTCTGAGCAACCTCCCGAATTAACTTTATGGGAGGCTACAGACAGCAAGACTGG 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000060336.5 |
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| 3UTR CCA 90 bp | ATAAAGGCTGCCTGGGGTGGGAAAGGGCAGCTCACCCTTAAATTATaGAGTTCCAGCACAAAGCTTCCCATATTCAGGGAAGCCTGTTTT | + |
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Preference number: 1 (lower is better) Translates to: IKAAWGGKGQLTLKL*SSSTKLPIFREACF Trigger: AAAACAGGCTTCCCTGAATATGGGAAGCTTTGTGCTGGAACTCCATAATTTAAGGGTGAGCTGCCCTTTCCCACCCCAGGCAGCCTTTAT 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000060336.5 |
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| 3UTR TCA 90 bp | TATCTCTCCCAATCATTCCCATCAGTCCATGGGGCTGTCTATACATaGTTGAATGCTTCTCTTTGGATGGAGCATCCAGTGTGCATAGCA | + |
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Preference number: 1 (lower is better) Translates to: YLSQSFPSVHGAVYT*LNASLWMEHPVCIA Trigger: TGCTATGCACACTGGATGCTCCATCCAAAGAGAAGCATTCAATCATGTATAGACAGCCCCATGGACTGATGGGAATGATTGGGAGAGATA 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000060336.5 |
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| 3UTR-3UTR GCA 90 bp | GGAGGAGCTCCCACCTCAGCTTTGGGGTGTGGCTTCTTCCATCTTGGGCTGTGGCTCCTGCAGTCTGCCTaGATAAAGGCTGCCTGGGGT | + |
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Preference number: 2 (lower is better) Translates to: GGAPTSALGCGFFHLGLWLLQSA*IKAAWG Trigger: ACCCCAGGCAGCCTTTATGCAGGCAGACTGCAGGAG...CCACAGCCCAAGATGGAAGAAGCCACACCCCAAAGCTGAGGTGGGAGCTCCTCC 60% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000060336.5 |
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| 3UTR-3UTR CCA 90 bp | ATGGGGATAGAATTCCTTCACCTTGGGGCAGCACCGGAATTCGGACTCCTGCAGAAAGGCTGCCTGGGGTaGGAAAGGGCAGCTCACCCT | + |
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Preference number: 2 (lower is better) Translates to: MGIEFLHLGAAPEFGLLQKGCLG*ERAAHP Trigger: AGGGTGAGCTGCCCTTTCCCACCCCAGGCAGCCTTT...CTGCAGGAGTCCGAATTCCGGTGCTGCCCCAAGGTGAAGGAATTCTATCCCCAT 58% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 1 transcripts: ENSMUST00000060336.5 |
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| 3UTR-3UTR CCA 90 bp | GACAAGGGTCCAGATACTACATGTGGAAGAGAAGCAGGCAGATGCACCCAGCAGTGCATAAAGGCTGCCTaGGGTGGGAAAGGGCAGCTC | + |
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Preference number: 2 (lower is better) Translates to: DKGPDTTCGREAGRCTQQCIKAA*GGKGQL Trigger: GAGCTGCCCTTTCCCACCCCAGGCAGCCTTTATGCA...CTGCTGGGTGCATCTGCCTGCTTCTCTTCCACATGTAGTATCTGGACCCTTGTC 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000060336.5 |
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| 3UTR CAA 90 bp | GCCACCAGACAGAAAGGAAGTTTGGGAGGAGCTCCCACCTCAGCTTaGGGGTGTGGCTTCTTCCATCTTGGGCTGTGGTACAGAATAGTA | + |
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Preference number: 2 (lower is better) Translates to: ATRQKGSLGGAPTSA*GCGFFHLGLWYRIV Trigger: TACTATTCTGTACCACAGCCCAAGATGGAAGAAGCCACACCCCAAAGCTGAGGTGGGAGCTCCTCCCAAACTTCCTTTCTGTCTGGTGGC 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000060336.5 |
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| 3UTR-3UTR GCA 90 bp | AACGTGCCCTGTTGGCCAGTCCAAAAATGGCAAACAGGAGTTTATAAAGTTGTCCAGGGTCCTTCTCACTaGCTCAGAGGTCCCAGGCAG | + |
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Preference number: 2 (lower is better) Translates to: NVPCWPVQKWQTGVYKVVQGPSH*LRGPRQ Trigger: CTGCCTGGGACCTCTGAGGCAGTGAGAAGGACCCTG...GACAACTTTATAAACTCCTGTTTGCCATTTTTGGACTGGCCAACAGGGCACGTT 51% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000060336.5 |
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| 3UTR-3UTR GCA 90 bp | ATCAAACCCATTCTGGTAACAAAATTCCAAAGATACAGTCTTGTCCCTGGGCGCAGAGAAGCAGGCAGATaGACCCAGCAGAGCCTCCAG | + |
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Preference number: 2 (lower is better) Translates to: IKPILVTKFQRYSLVPGRREAGR*TQQSLQ Trigger: CTGGAGGCTCTGCTGGGTGCATCTGCCTGCTTCTCT...GCGCCCAGGGACAAGACTGTATCTTTGGAATTTTGTTACCAGAATGGGTTTGAT 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000060336.5 |
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| 3UTR-3UTR CCA 90 bp | GTTTGGGAGGAGCTCCCACCTCAGCTTTGGGGTGTGGCTTCTTCCATCTTGGGCTGGCCAGTCCAAAAATaGCAAACAGGAGTTTATAAA | + |
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Preference number: 2 (lower is better) Translates to: VWEELPPQLWGVASSILGWPVQK*QTGVYK Trigger: TTTATAAACTCCTGTTTGCCATTTTTGGACTGGCCA...GCCCAAGATGGAAGAAGCCACACCCCAAAGCTGAGGTGGGAGCTCCTCCCAAAC 50% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000060336.5 |
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| 3UTR CAA 90 bp | CCCATCAGTCCATGGGGCTGTCTATACATGATTGAATGCTTCTCTTaGGATGGAGCATCCAGTGTGCATAGCACATACTATCTCTGGGTC | + |
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Preference number: 2 (lower is better) Translates to: PISPWGCLYMIECFS*DGASSVHSTYYLWV Trigger: GACCCAGAGATAGTATGTGCTATGCACACTGGATGCTCCATCCAAAGAGAAGCATTCAATCATGTATAGACAGCCCCATGGACTGATGGG 48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000060336.5 |
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| 3UTR-3UTR TCA 90 bp | AAAGATCAGTCTTGGAGATCTAAAAACAGAGGCGGGAGGACTTCTGTCCCTGGAGGCACCCTTGGAAACTaGTGTCACCAAGTTTTAGAG | + |
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Preference number: 2 (lower is better) Translates to: KDQSWRSKNRGGRTSVPGGTLGN*CHQVLE Trigger: CTCTAAAACTTGGTGACATCAGTTTCCAAGGGTGCC...TCCAGGGACAGAAGTCCTCCCGCCTCTGTTTTTAGATCTCCAAGACTGATCTTT 48% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000060336.5 |
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| 3UTR-3UTR CCA 90 bp | TTCCTCTCCAGAAAAGCAAAGTTCCAGTGGCTACAAGCAACGTGCCCTGTTGGCTTCAAAGATCAGTCTTaGAGATCTAAAAACAGAGGC | + |
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Preference number: 2 (lower is better) Translates to: FLSRKAKFQWLQATCPVGFKDQS*RSKNRG Trigger: GCCTCTGTTTTTAGATCTCCAAGACTGATCTTTGAA...GCCAACAGGGCACGTTGCTTGTAGCCACTGGAACTTTGCTTTTCTGGAGAGGAA 46% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000060336.5 |
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| 3UTR-3UTR CCA 90 bp | AGAAACATCAAACCCATTCTGGTAACAAAATTCCAAAGATACAGTCTTGTCCCTTCTCCCCAACACTCTTaGAGCCTAGGGCCTGGATTT | + |
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Preference number: 2 (lower is better) Translates to: RNIKPILVTKFQRYSLVPSPQHS*SLGPGF Trigger: AAATCCAGGCCCTAGGCTCCAAGAGTGTTGGGGAGA...AGGGACAAGACTGTATCTTTGGAATTTTGTTACCAGAATGGGTTTGATGTTTCT 43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000060336.5 |
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| 3UTR-3UTR TCA 90 bp | CAAGAGGATCAGAAATTCAAGGTCATCTTTAGTGACATAGCAAGTTCAGGTACAGTCCAAGAAGATGATTaGCTGCAAGAGAGTTCAAAG | + |
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Preference number: 2 (lower is better) Translates to: QEDQKFKVIFSDIASSGTVQEDD*LQESSK Trigger: CTTTGAACTCTCTTGCAGTCAATCATCTTCTTGGAC...TGTACCTGAACTTGCTATGTCACTAAAGATGACCTTGAATTTCTGATCCTCTTG 40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000060336.5 |
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| 3UTR-3UTR GCA 90 bp | AGAAACATCAAACCCATTCTGGTAACAAAATTCCAAAGATACAGTCTTGTCCCTCTGAAGCAACATAGCTaGAGAGAATCCCATCAGAAC | + |
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Preference number: 2 (lower is better) Translates to: RNIKPILVTKFQRYSLVPLKQHS*RESHQN Trigger: GTTCTGATGGGATTCTCTGCAGCTATGTTGCTTCAG...AGGGACAAGACTGTATCTTTGGAATTTTGTTACCAGAATGGGTTTGATGTTTCT 40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000060336.5 |
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| 3UTR-3UTR TCA 90 bp | ACATTGTTATATCCCAACAAATCATCCTCTATCACAAAACAGAATTTCATCCCCGTAGGTCCAAGAAGATaGTTGACTGCAAGAGAGTTC | + |
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Preference number: 2 (lower is better) Translates to: TLLYPNKSSSITKQNFIPVGPRR*LTAREF Trigger: GAACTCTCTTGCAGTCAATCATCTTCTTGGACCTAC...GGGGATGAAATTCTGTTTTGTGATAGAGGATGATTTGTTGGGATATAACAATGT 39% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000060336.5 |
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| 3UTR-3UTR GCA 90 bp | CAAGAGGATCAGAAATTCAAGGTCATCTTTAGTGACATAGCAAGTTCAGGTACACAAAGAGGTCTGAGCTaGAATTTGTTTGTTCTTTTG | + |
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Preference number: 2 (lower is better) Translates to: QEDQKFKVIFSDIASSGTQRGLS*NLFVLL Trigger: CAAAAGAACAAACAAATTGCAGCTCAGACCTCTTTG...TGTACCTGAACTTGCTATGTCACTAAAGATGACCTTGAATTTCTGATCCTCTTG 38% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000060336.5 |
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| 3UTR GCA 72 bp | GGGGCAGCACCGGAATTCGGACTCCTGCAGTCTGCCTaGATAAAGGCTGCCTGGGGTGGGAAAGGGCAGCTC | + |
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Preference number: 3 (lower is better) Translates to: GAAPEFGLLQSA*IKAAWGGKGQL Trigger: GAGCTGCCCTTTCCCACCCCAGGCAGCCTTTATGCAGGCAGACTGCAGGAGTCCGAATTCCGGTGCTGCCCC 64% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000060336.5 |
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| 3UTR GCA 72 bp | CCTTGGGGCAGCACCGGAATTCGGACTCCTGCAGTCTaGCTGCATAAAGGCTGCCTGGGGTGGGAAAGGGCA | + |
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Preference number: 3 (lower is better) Translates to: PWGSTGIRTPAV*LHKGCLGWERA Trigger: TGCCCTTTCCCACCCCAGGCAGCCTTTATGCAGGCAGACTGCAGGAGTCCGAATTCCGGTGCTGCCCCAAGG 62% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000060336.5 |
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| 3UTR GCA 72 bp | ATGCTCCCGATCGGGAACGCTCAGGGTCCTTCTCACTaGCTCAGAGGTCCCAGGCAGGCCTTTCCAGTTACA | + |
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Preference number: 3 (lower is better) Translates to: MLPIGNAQGPSH*LRGPRQAFPVT Trigger: TGTAACTGGAAAGGCCTGCCTGGGACCTCTGAGGCAGTGAGAAGGACCCTGAGCGTTCCCGATCGGGAGCAT 60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000060336.5 |
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| 3UTR GCA 72 bp | ATACCAAAGGAAGCAGAGGGAGCGGCGACGGCAGAATaGTCCCGATCGGGAACGCTCAGGGTCCTTCTCACT | + |
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Preference number: 3 (lower is better) Translates to: IPKEAEGAATAE*SRSGTLRVLLT Trigger: AGTGAGAAGGACCCTGAGCGTTCCCGATCGGGAGCATTCTGCCGTCGCCGCTCCCTCTGCTTCCTTTGGTAT 60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000060336.5 |
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| 3UTR GCA 72 bp | GGTCCAGATACTACATGTGGAAGAGAAGCAGGCAGATaGACCCAGCAGAGCCTCCAGCTTAGTCACCAGGGT | + |
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Preference number: 3 (lower is better) Translates to: GPDTTCGREAGR*TQQSLQLSHQG Trigger: ACCCTGGTGACTAAGCTGGAGGCTCTGCTGGGTGCATCTGCCTGCTTCTCTTCCACATGTAGTATCTGGACC 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000060336.5 |
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| 3UTR GCA 72 bp | TCAGGTAGGACCACAGCCTGCCTGAAGCAACATAGCTaGAGAGAATCCCATCAGAACAGGGCAGGTGCCTTC | + |
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Preference number: 3 (lower is better) Translates to: SGRTTACLKQHS*RESHQNRAGAF Trigger: GAAGGCACCTGCCCTGTTCTGATGGGATTCTCTGCAGCTATGTTGCTTCAGGCAGGCTGTGGTCCTACCTGA 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000060336.5 |
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| 3UTR CCA 72 bp | TTCGGACTCCTGCAGTCTGCCTGCATAAAGGCTGCCTaGGGTGGGAAAGGGCAGCTCACCCTTAAATTATGG | + |
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Preference number: 3 (lower is better) Translates to: FGLLQSACIKAA*GGKGQLTLKLW Trigger: CCATAATTTAAGGGTGAGCTGCCCTTTCCCACCCCAGGCAGCCTTTATGCAGGCAGACTGCAGGAGTCCGAA 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000060336.5 |
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| 3UTR CCA 72 bp | ACAGGGCAGGTGCCTTCTACCTGTAGTCTCAACACTTaGGCTCAAGCAGTAGGCCAGCCTTGGCTACAGAGT | + |
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Preference number: 3 (lower is better) Translates to: TGQVPSTCSLNT*AQAVGQPWLQS Trigger: ACTCTGTAGCCAAGGCTGGCCTACTGCTTGAGCCCAAGTGTTGAGACTACAGGTAGAAGGCACCTGCCCTGT 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000060336.5 |
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| 3UTR CCA 72 bp | AGAAAGGAAGTTTGGGAGGAGCTCCCACCTCAGCTTTaGGGTGTGGCTTCTTCCATCTTGGGCTGTGGTACA | + |
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Preference number: 3 (lower is better) Translates to: RKEVWEELPPQL*GVASSILGCGT Trigger: TGTACCACAGCCCAAGATGGAAGAAGCCACACCCCAAAGCTGAGGTGGGAGCTCCTCCCAAACTTCCTTTCT 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000060336.5 |
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| 3UTR CCA 72 bp | TTATTGTCCTGTGAGCCACCAGACAGAAAGGAAGTTTaGGAGGAGCTCCCACCTCAGCTTTGGGGTGTGGCT | + |
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Preference number: 3 (lower is better) Translates to: LLSCEPPDRKEV*EELPPQLWGVA Trigger: AGCCACACCCCAAAGCTGAGGTGGGAGCTCCTCCCAAACTTCCTTTCTGTCTGGTGGCTCACAGGACAATAA 54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000060336.5 |
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| 3UTR-3UTR CAA 90 bp | ACAGCCTGCCTGAAGCAACATAGCTGCAGAGAATCCCATCAGAACAGGGCAGGTAGCGCACACACCCTCTaGTCCATTCCTAGTTCCTCT | + |
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Preference number: 3 (lower is better) Translates to: TACLKQHSCRESHQNRAGSAHTL*SIPSSS Trigger: AGAGGAACTAGGAATGGACAAGAGGGTGTGTGCGCT...ACCTGCCCTGTTCTGATGGGATTCTCTGCAGCTATGTTGCTTCAGGCAGGCTGT 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000060336.5 |
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| 3UTR CCA 72 bp | CCAGGCAGGCCTTTCCAGTTACAGGCCAGGCACCCTTaGAAACTGATGTCACCAAGTTTTAGAGGCACACAT | + |
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Preference number: 3 (lower is better) Translates to: PGRPFQLQARHP*KLMSPSFRGTH Trigger: ATGTGTGCCTCTAAAACTTGGTGACATCAGTTTCCAAGGGTGCCTGGCCTGTAACTGGAAAGGCCTGCCTGG 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000060336.5 |
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| 3UTR CCA 72 bp | AAGTTTGGGAGGAGCTCCCACCTCAGCTTTGGGGTGTaGCTTCTTCCATCTTGGGCTGTGGTACAGAATAGT | + |
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Preference number: 3 (lower is better) Translates to: KFGRSSHLSFGV*LLPSWAVVQNS Trigger: ACTATTCTGTACCACAGCCCAAGATGGAAGAAGCCACACCCCAAAGCTGAGGTGGGAGCTCCTCCCAAACTT 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000060336.5 |
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| 3UTR CCA 72 bp | GCCTGGGGTGGGAAAGGGCAGCTCACCCTTAAATTATaGAGTTCCAGCACAAAGCTTCCCATATTCAGGGAA | + |
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Preference number: 3 (lower is better) Translates to: AWGGKGQLTLKL*SSSTKLPIFRE Trigger: TTCCCTGAATATGGGAAGCTTTGTGCTGGAACTCCATAATTTAAGGGTGAGCTGCCCTTTCCCACCCCAGGC 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000060336.5 |
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| 3UTR CCA 72 bp | GATGGAGCATCCAGTGTGCATAGCACATACTATCTCTaGGTCGACACCTGTAGTAACTACAGACCGACTCGG | + |
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Preference number: 3 (lower is better) Translates to: DGASSVHSTYYL*VDTCSNYRPTR Trigger: CCGAGTCGGTCTGTAGTTACTACAGGTGTCGACCCAGAGATAGTATGTGCTATGCACACTGGATGCTCCATC 51% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000060336.5 |
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| 3UTR-3UTR CAA 90 bp | GGTAAAGATAGCTGGAACGTGACAAGGGTCCAGATACTACATGTGGAAGAGAAGACAGGCCAGGCACCCTaGGAAACTGATGTCACCAAG | + |
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Preference number: 3 (lower is better) Translates to: GKDSWNVTRVQILHVEEKTGQAP*ETDVTK Trigger: CTTGGTGACATCAGTTTCCAAGGGTGCCTGGCCTGT...CTTCTCTTCCACATGTAGTATCTGGACCCTTGTCACGTTCCAGCTATCTTTACC 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000060336.5 |
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| 3UTR TCA 72 bp | GGCCTTTCCAGTTACAGGCCAGGCACCCTTGGAAACTaGTGTCACCAAGTTTTAGAGGCACACATGAAACAG | + |
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Preference number: 3 (lower is better) Translates to: GLSSYRPGTLGN*CHQVLEAHMKQ Trigger: CTGTTTCATGTGTGCCTCTAAAACTTGGTGACATCAGTTTCCAAGGGTGCCTGGCCTGTAACTGGAAAGGCC 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000060336.5 |
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| 3UTR TCA 72 bp | ACAGGTAATAGGTGTCAGGTAGGACCACAGCCTGCCTaGAGCAACATAGCTGCAGAGAATCCCATCAGAACA | + |
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Preference number: 3 (lower is better) Translates to: TGNRCQVGPQPA*SNIAAENPIRT Trigger: TGTTCTGATGGGATTCTCTGCAGCTATGTTGCTTCAGGCAGGCTGTGGTCCTACCTGACACCTATTACCTGT 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000060336.5 |
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| 3UTR-3UTR CAA 90 bp | CCAGACAGAAAGGAAGTTTGGGAGGAGCTCCCACCTCAGCTTTGGGGTGTGGCTCGAGCTAAGGTCATTTaGTATAAACTCCAAAGTCAT | + |
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Preference number: 3 (lower is better) Translates to: PDRKEVWEELPPQLWGVARAKVI*YKLQSH Trigger: ATGACTTTGGAGTTTATACAAAATGACCTTAGCTCG...AGCCACACCCCAAAGCTGAGGTGGGAGCTCCTCCCAAACTTCCTTTCTGTCTGG 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000060336.5 |
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| 3UTR-3UTR CAA 90 bp | CAAGAGGATCAGAAATTCAAGGTCATCTTTAGTGACATAGCAAGTTCAGGTACAGCTCCCACCTCAGCTTaGGGGTGTGGCTTCTTCCAT | + |
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Preference number: 3 (lower is better) Translates to: QEDQKFKVIFSDIASSGTAPTSA*GCGFFH Trigger: ATGGAAGAAGCCACACCCCAAAGCTGAGGTGGGAGC...TGTACCTGAACTTGCTATGTCACTAAAGATGACCTTGAATTTCTGATCCTCTTG 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000060336.5 |
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| 3UTR GCA 72 bp | CTGTCTGTAGCCTCCCATAAAGTTAATTCGGGAGGTTaGTCAGAAGTCTCCCAGCAGAGTCTTAACATCTTG | + |
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Preference number: 3 (lower is better) Translates to: LSVASHKVNSGG*SEVSQQSLNIL Trigger: CAAGATGTTAAGACTCTGCTGGGAGACTTCTGAGCAACCTCCCGAATTAACTTTATGGGAGGCTACAGACAG 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000060336.5 |
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| 3UTR TCA 72 bp | TGTCTAAGGGTCTCCTATCCGGTAGGTCCAAGAAGATaGTTGACTGCAAGAGAGTTCAAAGATCAGTCTTGG | + |
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Preference number: 3 (lower is better) Translates to: CLRVSYPVGPRR*LTAREFKDQSW Trigger: CCAAGACTGATCTTTGAACTCTCTTGCAGTCAATCATCTTCTTGGACCTACCGGATAGGAGACCCTTAGACA 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000060336.5 |
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| 3UTR CCA 72 bp | AGCAAAGTTCCAGTGGCTACAAGCAACGTGCCCTGTTaGCCAGTCCAAAAATGGCAAACAGGAGTTTATAAA | + |
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Preference number: 3 (lower is better) Translates to: SKVPVATSNVPC*PVQKWQTGVYK Trigger: TTTATAAACTCCTGTTTGCCATTTTTGGACTGGCCAACAGGGCACGTTGCTTGTAGCCACTGGAACTTTGCT 46% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000060336.5 |
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| 3UTR-3UTR CAA 90 bp | GGTAAAGATAGCTGGAACGTGACAAGGGTCCAGATACTACATGTGGAAGAGAAGGGTCTGAGCTGCAATTaGTTTGTTCTTTTGGTCATA | + |
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Preference number: 3 (lower is better) Translates to: GKDSWNVTRVQILHVEEKGLSCN*FVLLVI Trigger: TATGACCAAAAGAACAAACAAATTGCAGCTCAGACC...CTTCTCTTCCACATGTAGTATCTGGACCCTTGTCACGTTCCAGCTATCTTTACC 43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000060336.5 |
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| 3UTR TCA 72 bp | GAAGAAAGAAGTCTGTTCCGCTATTCCAAAGAGGTCTaGGCTGCAATTTGTTTGTTCTTTTGGTCATATCCC | + |
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Preference number: 3 (lower is better) Translates to: EERSLFRYSKEV*AAICLFFWSYP Trigger: GGGATATGACCAAAAGAACAAACAAATTGCAGCTCAGACCTCTTTGGAATAGCGGAACAGACTTCTTTCTTC 42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000060336.5 |
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| 3UTR TCA 72 bp | ATATATAAAGAAAAATATAAGGGTTACTTGACTTGGTaGCCATATAGTGCACTCCGACAGCTGGTCGTGCAT | + |
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Preference number: 3 (lower is better) Translates to: IYKEKYKGYLTW*PYSALRQLVVH Trigger: ATGCACGACCAGCTGTCGGAGTGCACTATATGGTCACCAAGTCAAGTAACCCTTATATTTTTCTTTATATAT 39% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000060336.5 |
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| 3UTR CCA 72 bp | ATTTTAATATCTCTCCCAATCATTCCCATCAGTCCATaGGGCTGTCTATACATGATTGAATGCTTCTCTTTG | + |
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Preference number: 3 (lower is better) Translates to: ILISLPIIPISP*GCLYMIECFSL Trigger: CAAAGAGAAGCATTCAATCATGTATAGACAGCCCCATGGACTGATGGGAATGATTGGGAGAGATATTAAAAT 39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000060336.5 |
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| CDS-3UTR CCA 90 bp | ATACCAAAGGAAGCAGAGGGAGCGGCGACGGCAGAATGCTCCCGATCGGGAACGTGCCCCTGCTGCTCATaGCCACGAAGAACCGGCTGG | + |
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Preference number: 4 (lower is better) Translates to: IPKEAEGAATAECSRSGTCPCCS*PRRTGW Trigger: CCAGCCGGTTCTTCGTGGCCATGAGCAGCAGGGGCA...CGTTCCCGATCGGGAGCATTCTGCCGTCGCCGCTCCCTCTGCTTCCTTTGGTAT 62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000060336.5 |
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| CDS-3UTR GCA 90 bp | CCGACAGGGTTCATACCAAAGGAAGCAGAGGGAGCGGCGACGGCAGAATGCTCCCGAAGAGCTTGCCCCTaGTGCTCATGGCCACGAAGA | + |
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Preference number: 4 (lower is better) Translates to: PTGFIPKEAEGAATAECSRRACP*CSWPRR Trigger: TCTTCGTGGCCATGAGCAGCAGGGGCAAGCTCTTCG...GGAGCATTCTGCCGTCGCCGCTCCCTCTGCTTCCTTTGGTATGAACCCTGTCGG 60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000060336.5 |
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| CDS-3UTR GCA 90 bp | AGTTTTGAGTTGTGGCGAGCGCACACACCCTCTTGTCCATTCCTAGTTCCTCTCCCGTCGGGCAGCACCTaGAGGTGGAATCCGATGCCC | + |
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Preference number: 4 (lower is better) Translates to: SFELWRAHTPSCPFLVPLPSGST*RWNPMP Trigger: GGGCATCGGATTCCACCTGCAGGTGCTGCCCGACGG...GAGAGGAACTAGGAATGGACAAGAGGGTGTGTGCGCTCGCCACAACTCAAAACT 58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000060336.5 |
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| CDS-3UTR GCA 90 bp | ATGGGGATAGAATTCCTTCACCTTGGGGCAGCACCGGAATTCGGACTCCTGCAGTGGCCACTCCGAAGATaGTCACCACGCCTCGCTGCA | + |
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Preference number: 4 (lower is better) Translates to: MGIEFLHLGAAPEFGLLQWPLRR*SPRLAA Trigger: TGCAGCGAGGCGTGGTGAGCATCTTCGGAGTGGCCA...CTGCAGGAGTCCGAATTCCGGTGCTGCCCCAAGGTGAAGGAATTCTATCCCCAT 58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000060336.5 |
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| CDS-3UTR CCA 90 bp | TACCAAAGGAAGCAGAGGGAGCGGCGACGGCAGAATGCTCCCGATCGGGAACGCAGTCTAGGAAGGAAGTaGGTTACCTTCATGGTAGGC | + |
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Preference number: 4 (lower is better) Translates to: YQRKQRERRRQNAPDRERSLGRK*VTFMVG Trigger: GCCTACCATGAAGGTAACCCACTTCCTTCCTAGACT...GCGTTCCCGATCGGGAGCATTCTGCCGTCGCCGCTCCCTCTGCTTCCTTTGGTA 57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000060336.5 |
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| CDS-3UTR GCA 90 bp | CCAGCACAAAGCTTCCCATATTCAGGGAAGCCTGTTTTTCTCAGTTTGATTCTTGGCCACCGGCAGGCGTaGCAGCGAGCGGGCCACCAA | + |
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Preference number: 4 (lower is better) Translates to: PAQSFPYSGKPVFLSLILGHRQA*QRAGHQ Trigger: TTGGTGGCCCGCTCGCTGGCACGCCTGCCGGTGGCC...AAGAATCAAACTGAGAAAAACAGGCTTCCCTGAATATGGGAAGCTTTGTGCTGG 56% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000060336.5 |
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| CDS-3UTR GCA 90 bp | ATCAAACCCATTCTGGTAACAAAATTCCAAAGATACAGTCTTGTCCCTGGGCGCGCACACCGAAGAGCTTaGCCCTGCTGCTCATGGCCA | + |
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Preference number: 4 (lower is better) Translates to: IKPILVTKFQRYSLVPGRAHRRA*PCCSWP Trigger: TGGCCATGAGCAGCAGGGGCAAGCTCTTCGGTGTGC...GCGCCCAGGGACAAGACTGTATCTTTGGAATTTTGTTACCAGAATGGGTTTGAT 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000060336.5 |
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| CDS-3UTR GCA 90 bp | ACATTGTTATATCCCAACAAATCATCCTCTATCACAAAACAGAATTTCATCCCCCTCACCACGCCTCGCTaGACCGGAGAGAGCTCCAGA | + |
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Preference number: 4 (lower is better) Translates to: TLLYPNKSSSITKQNFIPLTTPR*TGESSR Trigger: TCTGGAGCTCTCTCCGGTGCAGCGAGGCGTGGTGAG...GGGGATGAAATTCTGTTTTGTGATAGAGGATGATTTGTTGGGATATAACAATGT 47% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000060336.5 |
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| 3UTR CAA 72 bp | TCCTCTATCACAAAACAGAATTTCATCCCCAGAGTTTaGAGTTGTGGCGAGCGCACACACCCTCTTGTCCAT | + |
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Preference number: 4 (lower is better) Translates to: SSITKQNFIPRV*SCGERTHPLVH Trigger: ATGGACAAGAGGGTGTGTGCGCTCGCCACAACTCAAAACTCTGGGGATGAAATTCTGTTTTGTGATAGAGGA 47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000060336.5 |
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| CDS-3UTR GCA 90 bp | AGAAACATCAAACCCATTCTGGTAACAAAATTCCAAAGATACAGTCTTGTCCCTAGAGCTTGCCCCTGCTaGTCATGGCCACGAAGAACC | + |
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Preference number: 4 (lower is better) Translates to: RNIKPILVTKFQRYSLVPRACPC*SWPRRT Trigger: GGTTCTTCGTGGCCATGAGCAGCAGGGGCAAGCTCT...AGGGACAAGACTGTATCTTTGGAATTTTGTTACCAGAATGGGTTTGATGTTTCT 46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000060336.5 |
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| CDS GCA 90 bp | AGCGAGCGGGCCACCAAGCCGTCCCAGCCGTGCCCCAATTCTGCGTaGCGCGTGCCGTTGGGTGCGGCGGTCCCTCGGTCCGCCAGGGCC | + |
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Preference number: 5 (lower is better) Translates to: SERATKPSQPCPNSA*RVPLGAAVPRSARA Trigger: GGCCCTGGCGGACCGAGGGACCGCCGCACCCAACGGCACGCGGCACGCAGAATTGGGGCACGGCTGGGACGGCTTGGTGGCCCGCTCGCT 76% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000060336.5 |
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| CDS GCA 90 bp | TGCCAGCGAGCGGGCCACCAAGCCGTCCCAGCCGTGCCCCAATTCTaGGTGCCGCGTGCCGTTGGGTGCGGCGGTCCCTCGGTCCGCCAG | + |
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Preference number: 5 (lower is better) Translates to: CQRAGHQAVPAVPQF*VPRAVGCGGPSVRQ Trigger: CTGGCGGACCGAGGGACCGCCGCACCCAACGGCACGCGGCACGCAGAATTGGGGCACGGCTGGGACGGCTTGGTGGCCCGCTCGCTGGCA 74% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000060336.5 |
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| CDS GCA 90 bp | ACCGGCAGGCGTGCCAGCGAGCGGGCCACCAAGCCGTCCCAGCCGTaGCCCAATTCTGCGTGCCGCGTGCCGTTGGGTGCGGCGGTCCCT | + |
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Preference number: 5 (lower is better) Translates to: TGRRASERATKPSQP*PNSACRVPLGAAVP Trigger: AGGGACCGCCGCACCCAACGGCACGCGGCACGCAGAATTGGGGCACGGCTGGGACGGCTTGGTGGCCCGCTCGCTGGCACGCCTGCCGGT 74% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000060336.5 |
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| CDS-3UTR CAA 90 bp | GGAGGAGCTCCCACCTCAGCTTTGGGGTGTGGCTTCTTCCATCTTGGGCTGTGGGGCACACCGAAGAGCTaGCCCCTGCTGCTCATGGCC | + |
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Preference number: 5 (lower is better) Translates to: GGAPTSALGCGFFHLGLWGTPKS*PLLLMA Trigger: GGCCATGAGCAGCAGGGGCAAGCTCTTCGGTGTGCC...CCACAGCCCAAGATGGAAGAAGCCACACCCCAAAGCTGAGGTGGGAGCTCCTCC 63% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 1 transcripts: ENSMUST00000060336.5 |
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| CDS-3UTR CAA 90 bp | GACAAGGGTCCAGATACTACATGTGGAAGAGAAGCAGGCAGATGCACCCAGCAGACTCGGTTCCCCTTCTaGGTCCGCCCGTTCTTACTG | + |
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Preference number: 5 (lower is better) Translates to: DKGPDTTCGREAGRCTQQTRFPF*VRPFLL Trigger: CAGTAAGAACGGGCGGACCAAGAAGGGGAACCGAGT...CTGCTGGGTGCATCTGCCTGCTTCTCTTCCACATGTAGTATCTGGACCCTTGTC 56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000060336.5 |
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| CDS-3UTR CAA 90 bp | TTCCTCTCCAGAAAAGCAAAGTTCCAGTGGCTACAAGCAACGTGCCCTGTTGGCGGCAGAAGTATTTCTTaGAATTTACACTCGTCGGTA | + |
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Preference number: 5 (lower is better) Translates to: FLSRKAKFQWLQATCPVGGRSIS*NLHSSV Trigger: TACCGACGAGTGTAAATTCAAAGAAATACTTCTGCC...GCCAACAGGGCACGTTGCTTGTAGCCACTGGAACTTTGCTTTTCTGGAGAGGAA 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000060336.5 |
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| CDS GCA 72 bp | GCGGGCCACCAAGCCGTCCCAGCCGTGCCCCAATTCTaGGTGCCGCGTGCCGTTGGGTGCGGCGGTCCCTCG | + |
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Preference number: 6 (lower is better) Translates to: AGHQAVPAVPQF*VPRAVGCGGPS Trigger: CGAGGGACCGCCGCACCCAACGGCACGCGGCACGCAGAATTGGGGCACGGCTGGGACGGCTTGGTGGCCCGC 75% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000060336.5 |
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| CDS GCA 72 bp | GCCACCAAGCCGTCCCAGCCGTGCCCCAATTCTGCGTaGCGCGTGCCGTTGGGTGCGGCGGTCCCTCGGTCC | + |
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Preference number: 6 (lower is better) Translates to: ATKPSQPCPNSA*RVPLGAAVPRS Trigger: GGACCGAGGGACCGCCGCACCCAACGGCACGCGGCACGCAGAATTGGGGCACGGCTGGGACGGCTTGGTGGC 74% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000060336.5 |
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| CDS GCA 72 bp | CGTGCCAGCGAGCGGGCCACCAAGCCGTCCCAGCCGTaGCCCAATTCTGCGTGCCGCGTGCCGTTGGGTGCG | + |
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Preference number: 6 (lower is better) Translates to: RASERATKPSQP*PNSACRVPLGA Trigger: CGCACCCAACGGCACGCGGCACGCAGAATTGGGGCACGGCTGGGACGGCTTGGTGGCCCGCTCGCTGGCACG 74% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000060336.5 |
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| CDS GCA 72 bp | GGAGAGAGCTCCAGAAGACTGTCCCTCGTGTCTGCGTaGACACCACCGATGCGGCCGTCGGGCAGCACCTGC | + |
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Preference number: 6 (lower is better) Translates to: GESSRRLSLVSA*TPPMRPSGSTC Trigger: GCAGGTGCTGCCCGACGGCCGCATCGGTGGTGTGCACGCAGACACGAGGGACAGTCTTCTGGAGCTCTCTCC 67% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000060336.5 |
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| CDS GCA 72 bp | CACCGGAGAGAGCTCCAGAAGACTGTCCCTCGTGTCTaGGTGCACACCACCGATGCGGCCGTCGGGCAGCAC | + |
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Preference number: 6 (lower is better) Translates to: HRRELQKTVPRV*VHTTDAAVGQH Trigger: GTGCTGCCCGACGGCCGCATCGGTGGTGTGCACGCAGACACGAGGGACAGTCTTCTGGAGCTCTCTCCGGTG 67% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000060336.5 |
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| CDS GCA 72 bp | GAAGACTGTCCCTCGTGTCTGCGTGCACACCACCGATaGGGCCGTCGGGCAGCACCTGCAGGTGGAATCCGA | + |
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Preference number: 6 (lower is better) Translates to: EDCPSCLRAHHR*GRRAAPAGGIR Trigger: TCGGATTCCACCTGCAGGTGCTGCCCGACGGCCGCATCGGTGGTGTGCACGCAGACACGAGGGACAGTCTTC 65% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000060336.5 |
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| CDS CCA 72 bp | AGAAAGGCACACCGAAGAGCTTGCCCCTGCTGCTCATaGCCACGAAGAACCGGCTGGCCACTCCGAAGATGC | + |
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Preference number: 6 (lower is better) Translates to: RKAHRRACPCCS*PRRTGWPLRRC Trigger: GCATCTTCGGAGTGGCCAGCCGGTTCTTCGTGGCCATGAGCAGCAGGGGCAAGCTCTTCGGTGTGCCTTTCT 61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000060336.5 |
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| CDS CAA 90 bp | AGGAAGTGGGTTACCTTCATGGTAGGCGACACTCGGTTCCCCTTCTaGGTCCGCCCGTTCTTACTGAGGGCCATGAACATACCGGGGTAC | + |
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Preference number: 6 (lower is better) Translates to: RKWVTFMVGDTRFPF*VRPFLLRAMNIPGY Trigger: GTACCCCGGTATGTTCATGGCCCTCAGTAAGAACGGGCGGACCAAGAAGGGGAACCGAGTGTCGCCTACCATGAAGGTAACCCACTTCCT 57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000060336.5 |
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| CDS CAA 72 bp | TTACACTCGTCGGTAAAGAAAGGCACACCGAAGAGCTaGCCCCTGCTGCTCATGGCCACGAAGAACCGGCTG | + |
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Preference number: 6 (lower is better) Translates to: LHSSVKKGTPKS*PLLLMATKNRL Trigger: CAGCCGGTTCTTCGTGGCCATGAGCAGCAGGGGCAAGCTCTTCGGTGTGCCTTTCTTTACCGACGAGTGTAA 57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000060336.5 |
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| CDS CAA 90 bp | TCTTTGAATTTACACTCGTCGGTAAAGAAAGGCACACCGAAGAGCTaGCCCCTGCTGCTCATGGCCACGAAGAACCGGCTGGCCACTCCG | + |
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Preference number: 6 (lower is better) Translates to: SLNLHSSVKKGTPKS*PLLLMATKNRLATP Trigger: CGGAGTGGCCAGCCGGTTCTTCGTGGCCATGAGCAGCAGGGGCAAGCTCTTCGGTGTGCCTTTCTTTACCGACGAGTGTAAATTCAAAGA 56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000060336.5 |
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| CDS CAA 72 bp | GTTACCTTCATGGTAGGCGACACTCGGTTCCCCTTCTaGGTCCGCCCGTTCTTACTGAGGGCCATGAACATA | + |
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Preference number: 6 (lower is better) Translates to: VTFMVGDTRFPF*VRPFLLRAMNI Trigger: TATGTTCATGGCCCTCAGTAAGAACGGGCGGACCAAGAAGGGGAACCGAGTGTCGCCTACCATGAAGGTAAC 54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000060336.5 |
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