RADAR | Search for sensor designs | Human genes | Mouse genes | Code

Pregenerated sensors for FGD6 (Mus musculus)

Ensembl gene IDs: ENSMUSG00000020021

Ensembl transcript IDs: ENSMUST00000020208.5

Found 273 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).

Type Sensor Details
3UTR TCA 90 bp AGGTCCGAGTGGCAGCACTCATCTAAAGTCCTAGGATGTAGGAGCTaGGGTGGGGCGGTGAGCCTCAGGCCAGCCTGGGCTGCTTGGAAG +
Preference number: 1 (lower is better)
Translates to: RSEWQHSSKVLGCRS*GGAVSLRPAWAAWK
Trigger: CTTCCAAGCAGCCCAGGCTGGCCTGAGGCTCACCGCCCCACCTCAGCTCCTACATCCTAGGACTTTAGATGAGTGCTGCCACTCGGACCT
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000020208.5
3UTR CCA 90 bp CTTAGTTCGAGGCCAACTGGCAAGATCCTATGGGGTGTGGGAGTCTaGGGGGCTGTGGACAACGTTATCAGTACTGACTCTGCTGGGACT +
Preference number: 1 (lower is better)
Translates to: LSSRPTGKILWGVGV*GAVDNVISTDSAGT
Trigger: AGTCCCAGCAGAGTCAGTACTGATAACGTTGTCCACAGCCCCCCAGACTCCCACACCCCATAGGATCTTGCCAGTTGGCCTCGAACTAAG
56% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000020208.5
3UTR CCA 90 bp CACACACATGTAATCCTAGCAGTTGAGAAACCATGGGTCACAGGGTaGCATGGGTTACGCAAGTTCCAGGCCAGTCTGGGTTCCAAAGTG +
Preference number: 1 (lower is better)
Translates to: HTHVILAVEKPWVTG*HGLRKFQASLGSKV
Trigger: CACTTTGGAACCCAGACTGGCCTGGAACTTGCGTAACCCATGCCACCCTGTGACCCATGGTTTCTCAACTGCTAGGATTACATGTGTGTG
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000020208.5
3UTR TCA 90 bp TATGTGTGCTTTACGTGCAAAGCTTTCCCATCAGTCAGAGTGTCATaGCGTAAGGCAGAGACAGCAGTGTGGACGGCACATCATCCATGG +
Preference number: 1 (lower is better)
Translates to: YVCFTCKAFPSVRVS*RKAETAVWTAHHPW
Trigger: CCATGGATGATGTGCCGTCCACACTGCTGTCTCTGCCTTACGTCATGACACTCTGACTGATGGGAAAGCTTTGCACGTAAAGCACACATA
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000020208.5
3UTR GCA 90 bp TGGGCCAACTCCAGTGAGCAAGGCGAAGTGTTTTCAAGAACAGAATaGAGTAGGAATGGTGAGAGTGTTTATGAGCTGACGACTACAGGA +
Preference number: 1 (lower is better)
Translates to: WANSSEQGEVFSRTE*SRNGESVYELTTTG
Trigger: TCCTGTAGTCGTCAGCTCATAAACACTCTCACCATTCCTACTGCATTCTGTTCTTGAAAACACTTCGCCTTGCTCACTGGAGTTGGCCCA
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000020208.5
3UTR GCA 90 bp CTTCATCTCCTGCTGCTAATTAACAACTTTACGTGCAAGTGGGTTTaGATGTTAAACAGTAAGCACGTCAGAATTAAGAACATGAACCTT +
Preference number: 1 (lower is better)
Translates to: LHLLLLINNFTCKWV*MLNSKHVRIKNMNL
Trigger: AAGGTTCATGTTCTTAATTCTGACGTGCTTACTGTTTAACATGCAAACCCACTTGCACGTAAAGTTGTTAATTAGCAGCAGGAGATGAAG
39% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000020208.5
3UTR-3UTR TCA 90 bp GACTACAGGAACCAGGGAAAAGAGCACAAACAGTCTGAAGGACAGAAGAACAGGGCTGAGGTGGGGCGGTaGGCCTCAGGCCAGCCTGGG +
Preference number: 2 (lower is better)
Translates to: DYRNQGKEHKQSEGQKNRAEVGR*ASGQPG
Trigger: CCCAGGCTGGCCTGAGGCTCACCGCCCCACCTCAGC...CCTGTTCTTCTGTCCTTCAGACTGTTTGTGCTCTTTTCCCTGGTTCCTGTAGTC
59% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000020208.5
3UTR-3UTR TCA 90 bp AGAGGTCCAGGTGGTGTCCTGAAGAAAACAGACTTGAACGGGAAGAAAGCTGGGCTAGGATGTAGGAGCTaGGGTGGGGCGGTGAGCCTC +
Preference number: 2 (lower is better)
Translates to: RGPGGVLKKTDLNGKKAGLGCRS*GGAVSL
Trigger: GAGGCTCACCGCCCCACCTCAGCTCCTACATCCTAG...CCCAGCTTTCTTCCCGTTCAAGTCTGTTTTCTTCAGGACACCACCTGGACCTCT
57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000020208.5
3UTR-3UTR GCA 90 bp AGAGGTCCAGGTGGTGTCCTGAAGAAAACAGACTTGAACGGGAAGAAAGCTGGGCAGGCCAGCCTGGGCTaGTTGGAAGGACCCTGTCTC +
Preference number: 2 (lower is better)
Translates to: RGPGGVLKKTDLNGKKAGQASLG*LEGPCL
Trigger: GAGACAGGGTCCTTCCAAGCAGCCCAGGCTGGCCTG...CCCAGCTTTCTTCCCGTTCAAGTCTGTTTTCTTCAGGACACCACCTGGACCTCT
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000020208.5
3UTR-3UTR CCA 90 bp GAAAGGCTGAAGCAGGCCAAACCATTGGGAATGCCACTGAAGTTCACAGGCATTGCACCTCCACCTCGTTaGAACCCCAGAGGAAAGGCA +
Preference number: 2 (lower is better)
Translates to: ERLKQAKPLGMPLKFTGIAPPPR*NPRGKA
Trigger: TGCCTTTCCTCTGGGGTTCCAACGAGGTGGAGGTGC...AATGCCTGTGAACTTCAGTGGCATTCCCAATGGTTTGGCCTGCTTCAGCCTTTC
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000020208.5
3UTR-3UTR CCA 90 bp AGAGGTCCAGGTGGTGTCCTGAAGAAAACAGACTTGAACGGGAAGAAAGCTGGGGCAGTTGAGAAACCATaGGTCACAGGGTGGCATGGG +
Preference number: 2 (lower is better)
Translates to: RGPGGVLKKTDLNGKKAGAVEKP*VTGWHG
Trigger: CCCATGCCACCCTGTGACCCATGGTTTCTCAACTGC...CCCAGCTTTCTTCCCGTTCAAGTCTGTTTTCTTCAGGACACCACCTGGACCTCT
53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000020208.5
3UTR-3UTR CCA 90 bp GACTACAGGAACCAGGGAAAAGAGCACAAACAGTCTGAAGGACAGAAGAACAGGCCAGCCTGGGCTGCTTaGAAGGACCCTGTCTCAAAA +
Preference number: 2 (lower is better)
Translates to: DYRNQGKEHKQSEGQKNRPAWAA*KDPVSK
Trigger: TTTTGAGACAGGGTCCTTCCAAGCAGCCCAGGCTGG...CCTGTTCTTCTGTCCTTCAGACTGTTTGTGCTCTTTTCCCTGGTTCCTGTAGTC
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000020208.5
3UTR-3UTR TCA 90 bp GCTCCAGAGCACGTGTACCGAAGATATTTTTCAGGGACCCACAGGAGACATCTAAAGTTGCTTAGAGTTTaGGGCAGGAAGACTGCAGCT +
Preference number: 2 (lower is better)
Translates to: APEHVYRRYFSGTHRRHLKLLRV*GRKTAA
Trigger: AGCTGCAGTCTTCCTGCCTCAAACTCTAAGCAACTT...TAGATGTCTCCTGTGGGTCCCTGAAAAATATCTTCGGTACACGTGCTCTGGAGC
49% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000020208.5
3UTR-3UTR TCA 90 bp GCTCCAGAGCACGTGTACCGAAGATATTTTTCAGGGACCCACAGGAGACATCTATGTAATCCTAGCAGTTaGGAAACCATGGGTCACAGG +
Preference number: 2 (lower is better)
Translates to: APEHVYRRYFSGTHRRHLCNPSS*ETMGHR
Trigger: CCTGTGACCCATGGTTTCTCAACTGCTAGGATTACA...TAGATGTCTCCTGTGGGTCCCTGAAAAATATCTTCGGTACACGTGCTCTGGAGC
49% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000020208.5
3UTR-3UTR CCA 90 bp GAAAGGCTGAAGCAGGCCAAACCATTGGGAATGCCACTGAAGTTCACAGGCATTAATAAAGACTGGACATaGTGGTACAGGCCTGGGACT +
Preference number: 2 (lower is better)
Translates to: ERLKQAKPLGMPLKFTGINKDWT*WYRPGT
Trigger: AGTCCCAGGCCTGTACCACCATGTCCAGTCTTTATT...AATGCCTGTGAACTTCAGTGGCATTCCCAATGGTTTGGCCTGCTTCAGCCTTTC
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000020208.5
3UTR-3UTR GCA 90 bp GAAAGGCTGAAGCAGGCCAAACCATTGGGAATGCCACTGAAGTTCACAGGCATTGGCAGTGTTCATTCTTaGACGGCTTTTGAGCAGTTT +
Preference number: 2 (lower is better)
Translates to: ERLKQAKPLGMPLKFTGIGSVHS*TAFEQF
Trigger: AAACTGCTCAAAAGCCGTGCAAGAATGAACACTGCC...AATGCCTGTGAACTTCAGTGGCATTCCCAATGGTTTGGCCTGCTTCAGCCTTTC
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000020208.5
3UTR-3UTR CCA 90 bp TATCTATCCTTAAGGATCGTGGCGTGCAGTGAGGTAGGGTTGACTTCTGGAAATATGGTGGTACAGGCCTaGGACTCAAGTTGCTTAGAG +
Preference number: 2 (lower is better)
Translates to: YLSLRIVACSEVGLTSGNMVVQA*DSSCLE
Trigger: CTCTAAGCAACTTGAGTCCCAGGCCTGTACCACCAT...ATTTCCAGAAGTCAACCCTACCTCACTGCACGCCACGATCCTTAAGGATAGATA
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000020208.5
3UTR-3UTR CCA 90 bp TATCTATCCTTAAGGATCGTGGCGTGCAGTGAGGTAGGGTTGACTTCTGGAAATCTGGTAAGGTCCGAGTaGCAGCACTCATCTAAAGTC +
Preference number: 2 (lower is better)
Translates to: YLSLRIVACSEVGLTSGNLVRSE*QHSSKV
Trigger: GACTTTAGATGAGTGCTGCCACTCGGACCTTACCAG...ATTTCCAGAAGTCAACCCTACCTCACTGCACGCCACGATCCTTAAGGATAGATA
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000020208.5
3UTR-3UTR CCA 90 bp GAAAGGCTGAAGCAGGCCAAACCATTGGGAATGCCACTGAAGTTCACAGGCATTTCACAGATAACGAAGTaGGAAATGCCTGCAGCCTTT +
Preference number: 2 (lower is better)
Translates to: ERLKQAKPLGMPLKFTGISQITK*EMPAAF
Trigger: AAAGGCTGCAGGCATTTCCCACTTCGTTATCTGTGA...AATGCCTGTGAACTTCAGTGGCATTCCCAATGGTTTGGCCTGCTTCAGCCTTTC
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000020208.5
3UTR-3UTR CCA 90 bp GAAAGGCTGAAGCAGGCCAAACCATTGGGAATGCCACTGAAGTTCACAGGCATTAAGGCAAAACCCCTTTaGGAAGCCTGTCTTCAATGT +
Preference number: 2 (lower is better)
Translates to: ERLKQAKPLGMPLKFTGIKAKPL*EACLQC
Trigger: ACATTGAAGACAGGCTTCCCAAAGGGGTTTTGCCTT...AATGCCTGTGAACTTCAGTGGCATTCCCAATGGTTTGGCCTGCTTCAGCCTTTC
48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000020208.5
3UTR-3UTR CCA 90 bp GACTACAGGAACCAGGGAAAAGAGCACAAACAGTCTGAAGGACAGAAGAACAGGCAGCAGGAGCTGTCCTaGGAAAACAGTGAGATTCTT +
Preference number: 2 (lower is better)
Translates to: DYRNQGKEHKQSEGQKNRQQELS*ENSEIL
Trigger: AAGAATCTCACTGTTTTCCCAGGACAGCTCCTGCTG...CCTGTTCTTCTGTCCTTCAGACTGTTTGTGCTCTTTTCCCTGGTTCCTGTAGTC
48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000020208.5
3UTR-3UTR GCA 90 bp GAAAGGCTGAAGCAGGCCAAACCATTGGGAATGCCACTGAAGTTCACAGGCATTACGTGCAAGTGGGTTTaGATGTTAAACAGTAAGCAC +
Preference number: 2 (lower is better)
Translates to: ERLKQAKPLGMPLKFTGITCKWV*MLNSKH
Trigger: GTGCTTACTGTTTAACATGCAAACCCACTTGCACGT...AATGCCTGTGAACTTCAGTGGCATTCCCAATGGTTTGGCCTGCTTCAGCCTTTC
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000020208.5
3UTR-3UTR TCA 90 bp GAAAGGCTGAAGCAGGCCAAACCATTGGGAATGCCACTGAAGTTCACAGGCATTTTCTTGCACGGCTTTTaGGCAGTTTTTAATCCTTTC +
Preference number: 2 (lower is better)
Translates to: ERLKQAKPLGMPLKFTGIFLHGF*AVFNPF
Trigger: GAAAGGATTAAAAACTGCTCAAAAGCCGTGCAAGAA...AATGCCTGTGAACTTCAGTGGCATTCCCAATGGTTTGGCCTGCTTCAGCCTTTC
46% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 1 transcripts:
ENSMUST00000020208.5
3UTR-3UTR TCA 90 bp TATCTATCCTTAAGGATCGTGGCGTGCAGTGAGGTAGGGTTGACTTCTGGAAATGTCTGGGTTCCAAAGTaGGCTTCTGTCTCAGAAAAT +
Preference number: 2 (lower is better)
Translates to: YLSLRIVACSEVGLTSGNVWVPK*ASVSEN
Trigger: ATTTTCTGAGACAGAAGCTCACTTTGGAACCCAGAC...ATTTCCAGAAGTCAACCCTACCTCACTGCACGCCACGATCCTTAAGGATAGATA
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000020208.5
3UTR-3UTR GCA 90 bp TATCTATCCTTAAGGATCGTGGCGTGCAGTGAGGTAGGGTTGACTTCTGGAAATTTTAATCCTTTCTGCTaGACCTCCACCTCGTTGGAA +
Preference number: 2 (lower is better)
Translates to: YLSLRIVACSEVGLTSGNFNPFC*TSTSLE
Trigger: TTCCAACGAGGTGGAGGTGCAGCAGAAAGGATTAAA...ATTTCCAGAAGTCAACCCTACCTCACTGCACGCCACGATCCTTAAGGATAGATA
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000020208.5
3UTR-3UTR TCA 90 bp GACTACAGGAACCAGGGAAAAGAGCACAAACAGTCTGAAGGACAGAAGAACAGGTTGCTTTGCAATGCCTaGAATAGACTACACAGAAAG +
Preference number: 2 (lower is better)
Translates to: DYRNQGKEHKQSEGQKNRLLCNA*NRLHRK
Trigger: CTTTCTGTGTAGTCTATTTCAGGCATTGCAAAGCAA...CCTGTTCTTCTGTCCTTCAGACTGTTTGTGCTCTTTTCCCTGGTTCCTGTAGTC
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000020208.5
3UTR-3UTR GCA 90 bp TATCTATCCTTAAGGATCGTGGCGTGCAGTGAGGTAGGGTTGACTTCTGGAAATTATGTGTGCTTTACGTaGAAAGCTTTCCCATCAGTC +
Preference number: 2 (lower is better)
Translates to: YLSLRIVACSEVGLTSGNYVCFT*KAFPSV
Trigger: GACTGATGGGAAAGCTTTGCACGTAAAGCACACATA...ATTTCCAGAAGTCAACCCTACCTCACTGCACGCCACGATCCTTAAGGATAGATA
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000020208.5
3UTR-3UTR GCA 90 bp GCTCCAGAGCACGTGTACCGAAGATATTTTTCAGGGACCCACAGGAGACATCTAAGTTGTTTTCCTCAGTaGCATTCCATTGTGTTAGAA +
Preference number: 2 (lower is better)
Translates to: APEHVYRRYFSGTHRRHLSCFPQ*HSIVLE
Trigger: TTCTAACACAATGGAATGGCACTGAGGAAAACAACT...TAGATGTCTCCTGTGGGTCCCTGAAAAATATCTTCGGTACACGTGCTCTGGAGC
44% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000020208.5
3UTR-3UTR CCA 90 bp TCACAGGCATTGGGATTAAATCAGAATTCTACAGTAATGCAGATTGCTTTGCAAGCAGAGACAGCAGTGTaGACGGCACATCATCCATGG +
Preference number: 2 (lower is better)
Translates to: SQALGLNQNSTVMQIALQAETAV*TAHHPW
Trigger: CCATGGATGATGTGCCGTCCACACTGCTGTCTCTGC...TTGCAAAGCAATCTGCATTACTGTAGAATTCTGATTTAATCCCAATGCCTGTGA
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000020208.5
3UTR-3UTR CCA 90 bp TCACAGGCATTGGGATTAAATCAGAATTCTACAGTAATGCAGATTGCTTTGCAACCATGGGTCACAGGGTaGCATGGGTTACGCAAGTTC +
Preference number: 2 (lower is better)
Translates to: SQALGLNQNSTVMQIALQPWVTG*HGLRKF
Trigger: GAACTTGCGTAACCCATGCCACCCTGTGACCCATGG...TTGCAAAGCAATCTGCATTACTGTAGAATTCTGATTTAATCCCAATGCCTGTGA
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000020208.5
3UTR-3UTR CCA 90 bp TATCTATCCTTAAGGATCGTGGCGTGCAGTGAGGTAGGGTTGACTTCTGGAAATAACTTTACGTGCAAGTaGGTTTGCATGTTAAACAGT +
Preference number: 2 (lower is better)
Translates to: YLSLRIVACSEVGLTSGNNFTCK*VCMLNS
Trigger: ACTGTTTAACATGCAAACCCACTTGCACGTAAAGTT...ATTTCCAGAAGTCAACCCTACCTCACTGCACGCCACGATCCTTAAGGATAGATA
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000020208.5
3UTR-3UTR CCA 90 bp TCACAGGCATTGGGATTAAATCAGAATTCTACAGTAATGCAGATTGCTTTGCAAACGGCACATCATCCATaGTACACAGAATACAGCATT +
Preference number: 2 (lower is better)
Translates to: SQALGLNQNSTVMQIALQTAHHP*YTEYSI
Trigger: AATGCTGTATTCTGTGTACCATGGATGATGTGCCGT...TTGCAAAGCAATCTGCATTACTGTAGAATTCTGATTTAATCCCAATGCCTGTGA
39% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000020208.5
3UTR-3UTR GCA 90 bp ATGCCACTGAAGTTCACAGGCATTGGGATTAAATCAGAATTCTACAGTAATGCACACTGTATGGAAATTTaGTACTTAGTATGTGTGCTT +
Preference number: 2 (lower is better)
Translates to: MPLKFTGIGIKSEFYSNAHCMEI*YLVCVL
Trigger: AAGCACACATACTAAGTAGCAAATTTCCATACAGTG...TGCATTACTGTAGAATTCTGATTTAATCCCAATGCCTGTGAACTTCAGTGGCAT
37% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000020208.5
3UTR-3UTR GCA 90 bp TCACAGGCATTGGGATTAAATCAGAATTCTACAGTAATGCAGATTGCTTTGCAAAATGTGCATCTCTACTaGAATATAAACAGTTCCACC +
Preference number: 2 (lower is better)
Translates to: SQALGLNQNSTVMQIALQNVHLY*NINSST
Trigger: GGTGGAACTGTTTATATTGCAGTAGAGATGCACATT...TTGCAAAGCAATCTGCATTACTGTAGAATTCTGATTTAATCCCAATGCCTGTGA
37% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000020208.5
3UTR-3UTR GCA 90 bp TCACAGGCATTGGGATTAAATCAGAATTCTACAGTAATGCAGATTGCTTTGCAAAGCCTACTATGTATCTaGCTAACAAAAACATACTTC +
Preference number: 2 (lower is better)
Translates to: SQALGLNQNSTVMQIALQSLLCI*LTKTYF
Trigger: GAAGTATGTTTTTGTTAGGCAGATACATAGTAGGCT...TTGCAAAGCAATCTGCATTACTGTAGAATTCTGATTTAATCCCAATGCCTGTGA
36% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000020208.5
3UTR CCA 72 bp GTAATCCTAGCAGTTGAGAAACCATGGGTCACAGGGTaGCATGGGTTACGCAAGTTCCAGGCCAGTCTGGGT +
Preference number: 3 (lower is better)
Translates to: VILAVEKPWVTG*HGLRKFQASLG
Trigger: ACCCAGACTGGCCTGGAACTTGCGTAACCCATGCCACCCTGTGACCCATGGTTTCTCAACTGCTAGGATTAC
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000020208.5
3UTR-3UTR CAA 90 bp GACTACAGGAACCAGGGAAAAGAGCACAAACAGTCTGAAGGACAGAAGAACAGGTGCACCTCCACCTCGTaGGAACCCCAGAGGAAAGGC +
Preference number: 3 (lower is better)
Translates to: DYRNQGKEHKQSEGQKNRCTSTS*EPQRKG
Trigger: GCCTTTCCTCTGGGGTTCCAACGAGGTGGAGGTGCA...CCTGTTCTTCTGTCCTTCAGACTGTTTGTGCTCTTTTCCCTGGTTCCTGTAGTC
53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000020208.5
3UTR GCA 72 bp AGACTGGACATGGTGGTACAGGCCTGGGACTCAAGTTaGTTAGAGTTTGAGGCAGGAAGACTGCAGCTCATG +
Preference number: 3 (lower is better)
Translates to: RLDMVVQAWDSS*LEFEAGRLQLM
Trigger: CATGAGCTGCAGTCTTCCTGCCTCAAACTCTAAGCAACTTGAGTCCCAGGCCTGTACCACCATGTCCAGTCT
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000020208.5
3UTR-3UTR CAA 90 bp AGTCTTGCCCTGGATGTGGGCTTGAAGGGCGGTGAGGAGAGAGTGGATCAGGGGAAGAGAAAAATCACATaGACACTGATCTGGCGGTTT +
Preference number: 3 (lower is better)
Translates to: SLALDVGLKGGEERVDQGKRKIT*TLIWRF
Trigger: AAACCGCCAGATCAGTGTCAATGTGATTTTTCTCTT...CCCCTGATCCACTCTCTCCTCACCGCCCTTCAAGCCCACATCCAGGGCAAGACT
52% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000020208.5
3UTR-3UTR CAA 90 bp GCTCCAGAGCACGTGTACCGAAGATATTTTTCAGGGACCCACAGGAGACATCTATTCCTAGATAAGGGCTaGAACCCAGGGCCTTCTACA +
Preference number: 3 (lower is better)
Translates to: APEHVYRRYFSGTHRRHLFLDKG*NPGPST
Trigger: TGTAGAAGGCCCTGGGTTCAAGCCCTTATCTAGGAA...TAGATGTCTCCTGTGGGTCCCTGAAAAATATCTTCGGTACACGTGCTCTGGAGC
50% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000020208.5
3UTR GCA 72 bp TTAGAGTTTGAGGCAGGAAGACTGCAGCTCATGCTTTaGCTACACTTAGTTCGAGGCCAACTGGCAAGATCC +
Preference number: 3 (lower is better)
Translates to: LEFEAGRLQLML*LHLVRGQLARS
Trigger: GGATCTTGCCAGTTGGCCTCGAACTAAGTGTAGGCAAAGCATGAGCTGCAGTCTTCCTGCCTCAAACTCTAA
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000020208.5
3UTR CCA 72 bp CAAGAGAGACTCAGAGTTCGATCCCAGAGGTCCAGGTaGTGTCCTGAAGAAAACAGACTTGAACGGGAAGAA +
Preference number: 3 (lower is better)
Translates to: QERLRVRSQRSR*CPEENRLEREE
Trigger: TTCTTCCCGTTCAAGTCTGTTTTCTTCAGGACACCACCTGGACCTCTGGGATCGAACTCTGAGTCTCTCTTG
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000020208.5
3UTR CCA 72 bp GCAAGCATTTATCCACTGCATGTAAGACATTCTTGTTaGATGTGGGCCAACTCCAGTGAGCAAGGCGAAGTG +
Preference number: 3 (lower is better)
Translates to: ASIYPLHVRHSC*MWANSSEQGEV
Trigger: CACTTCGCCTTGCTCACTGGAGTTGGCCCACATCCAACAAGAATGTCTTACATGCAGTGGATAAATGCTTGC
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000020208.5
3UTR-3UTR CAA 90 bp GAAAGGCTGAAGCAGGCCAAACCATTGGGAATGCCACTGAAGTTCACAGGCATTTTTGGAAGAACTGATTaGTTCCCCGTGACAAGGAAG +
Preference number: 3 (lower is better)
Translates to: ERLKQAKPLGMPLKFTGIFGRTD*FPVTRK
Trigger: CTTCCTTGTCACGGGGAACAAATCAGTTCTTCCAAA...AATGCCTGTGAACTTCAGTGGCATTCCCAATGGTTTGGCCTGCTTCAGCCTTTC
48% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000020208.5
3UTR TCA 72 bp GATTTGTCTCGGCAGTGTTCATTCTTGCACGGCTTTTaGGCAGTTTTTAATCCTTTCTGCTGCACCTCCACC +
Preference number: 3 (lower is better)
Translates to: DLSRQCSFLHGF*AVFNPFCCTST
Trigger: GGTGGAGGTGCAGCAGAAAGGATTAAAAACTGCTCAAAAGCCGTGCAAGAATGAACACTGCCGAGACAAATC
47% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000020208.5
3UTR GCA 72 bp AAGGCTCCTCCATCCCTCCACAGCCTACTATGTATCTaGCTAACAAAAACATACTTCCCAGTTGTTTTCCTC +
Preference number: 3 (lower is better)
Translates to: KAPPSLHSLLCI*LTKTYFPVVFL
Trigger: GAGGAAAACAACTGGGAAGTATGTTTTTGTTAGGCAGATACATAGTAGGCTGTGGAGGGATGGAGGAGCCTT
46% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000020208.5
3UTR-3UTR CAA 90 bp AGAGACATCCAAGAAAAACTGGACCTGCTACCTCTAGATCTGCTGTATCTGCAGAATACCATCACTGACTaGGCCTCAAAACTCTTAAGA +
Preference number: 3 (lower is better)
Translates to: RDIQEKLDLLPLDLLYLQNTITD*ASKLLR
Trigger: TCTTAAGAGTTTTGAGGCCAAGTCAGTGATGGTATT...CTGCAGATACAGCAGATCTAGAGGTAGCAGGTCCAGTTTTTCTTGGATGTCTCT
43% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000020208.5
3UTR-3UTR CAA 90 bp TATCTATCCTTAAGGATCGTGGCGTGCAGTGAGGTAGGGTTGACTTCTGGAAATCCAACTGAAATATGTTaGGAAGAACTGATTTGTTCC +
Preference number: 3 (lower is better)
Translates to: YLSLRIVACSEVGLTSGNPTEIC*EELICS
Trigger: GGAACAAATCAGTTCTTCCAAACATATTTCAGTTGG...ATTTCCAGAAGTCAACCCTACCTCACTGCACGCCACGATCCTTAAGGATAGATA
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000020208.5
3UTR TCA 72 bp AACGGCATCCAAAAGGCCTCACGAATGTGTTCAGGATaGAAAAATAGTATCCAGAATATAATTCTCTACCAC +
Preference number: 3 (lower is better)
Translates to: NGIQKASRMCSG*KNSIQNIILYH
Trigger: GTGGTAGAGAATTATATTCTGGATACTATTTTTTCATCCTGAACACATTCGTGAGGCCTTTTGGATGCCGTT
39% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000020208.5
3UTR GCA 72 bp CTGCTGCTAATTAACAACTTTACGTGCAAGTGGGTTTaGATGTTAAACAGTAAGCACGTCAGAATTAAGAAC +
Preference number: 3 (lower is better)
Translates to: LLLINNFTCKWV*MLNSKHVRIKN
Trigger: GTTCTTAATTCTGACGTGCTTACTGTTTAACATGCAAACCCACTTGCACGTAAAGTTGTTAATTAGCAGCAG
39% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000020208.5
CDS-3UTR CCA 90 bp AGTCTTGCCCTGGATGTGGGCTTGAAGGGCGGTGAGGAGAGAGTGGATCAGGGGCGGGTTACAGGTAGCTaGTGGCTGGTCAGTGCAGGC +
Preference number: 4 (lower is better)
Translates to: SLALDVGLKGGEERVDQGRVTGS*WLVSAG
Trigger: GCCTGCACTGACCAGCCACCAGCTACCTGTAACCCG...CCCCTGATCCACTCTCTCCTCACCGCCCTTCAAGCCCACATCCAGGGCAAGACT
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000020208.5
CDS-3UTR CCA 90 bp AGTCTTGCCCTGGATGTGGGCTTGAAGGGCGGTGAGGAGAGAGTGGATCAGGGGCCACAGGCCCTGCAGTaGTGTCTTCTCCAGGTCAGG +
Preference number: 4 (lower is better)
Translates to: SLALDVGLKGGEERVDQGPQALQ*CLLQVR
Trigger: CCTGACCTGGAGAAGACACCACTGCAGGGCCTGTGG...CCCCTGATCCACTCTCTCCTCACCGCCCTTCAAGCCCACATCCAGGGCAAGACT
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000020208.5
CDS-3UTR GCA 90 bp AGAGGTCCAGGTGGTGTCCTGAAGAAAACAGACTTGAACGGGAAGAAAGCTGGGCCCGAGCTGCCTGGATaGATGGGCTACAGCACCCCG +
Preference number: 4 (lower is better)
Translates to: RGPGGVLKKTDLNGKKAGPELPG*MGYSTP
Trigger: CGGGGTGCTGTAGCCCATGCATCCAGGCAGCTCGGG...CCCAGCTTTCTTCCCGTTCAAGTCTGTTTTCTTCAGGACACCACCTGGACCTCT
58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000020208.5
CDS-3UTR TCA 90 bp AGAGGTCCAGGTGGTGTCCTGAAGAAAACAGACTTGAACGGGAAGAAAGCTGGGCGGGGAACCACAAGGTaGTCGCTGCTGCGTCAGGAC +
Preference number: 4 (lower is better)
Translates to: RGPGGVLKKTDLNGKKAGRGTTR*SLLRQD
Trigger: GTCCTGACGCAGCAGCGATCACCTTGTGGTTCCCCG...CCCAGCTTTCTTCCCGTTCAAGTCTGTTTTCTTCAGGACACCACCTGGACCTCT
57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000020208.5
CDS-3UTR GCA 90 bp AGTCTTGCCCTGGATGTGGGCTTGAAGGGCGGTGAGGAGAGAGTGGATCAGGGGCTTTTTAAGCACCCCTaGTGCAGGCAAGCTGTGTCT +
Preference number: 4 (lower is better)
Translates to: SLALDVGLKGGEERVDQGLFKHP*CRQAVS
Trigger: AGACACAGCTTGCCTGCAGCAGGGGTGCTTAAAAAG...CCCCTGATCCACTCTCTCCTCACCGCCCTTCAAGCCCACATCCAGGGCAAGACT
57% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 1 transcripts:
ENSMUST00000020208.5
CDS-3UTR GCA 90 bp AGTCTTGCCCTGGATGTGGGCTTGAAGGGCGGTGAGGAGAGAGTGGATCAGGGGAAAACCCGCCCGGGTTaGACAATTTCATGGTGTCCA +
Preference number: 4 (lower is better)
Translates to: SLALDVGLKGGEERVDQGKTRPG*TISWCP
Trigger: TGGACACCATGAAATTGTGCAACCCGGGCGGGTTTT...CCCCTGATCCACTCTCTCCTCACCGCCCTTCAAGCCCACATCCAGGGCAAGACT
57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000020208.5
CDS-3UTR GCA 90 bp AGTCTTGCCCTGGATGTGGGCTTGAAGGGCGGTGAGGAGAGAGTGGATCAGGGGTCCTCCCTGACGGGATaGTATGTAAGACTGACGACA +
Preference number: 4 (lower is better)
Translates to: SLALDVGLKGGEERVDQGSSLTG*YVRLTT
Trigger: TGTCGTCAGTCTTACATAGCATCCCGTCAGGGAGGA...CCCCTGATCCACTCTCTCCTCACCGCCCTTCAAGCCCACATCCAGGGCAAGACT
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000020208.5
CDS-3UTR TCA 90 bp AGTCTTGCCCTGGATGTGGGCTTGAAGGGCGGTGAGGAGAGAGTGGATCAGGGGGGATGCTTAATGTCTTaGACAACTGAGTTTGTCGGG +
Preference number: 4 (lower is better)
Translates to: SLALDVGLKGGEERVDQGGCLMS*TTEFVG
Trigger: CCCGACAAACTCAGTTGTTCAAGACATTAAGCATCC...CCCCTGATCCACTCTCTCCTCACCGCCCTTCAAGCCCACATCCAGGGCAAGACT
54% GC, longest homopolymer 6 nt, total homopolymer stretches 6 nt.
Matches the following 1 transcripts:
ENSMUST00000020208.5
CDS-3UTR TCA 90 bp AGAGGTCCAGGTGGTGTCCTGAAGAAAACAGACTTGAACGGGAAGAAAGCTGGGTCAGGAGATCCCGGTTaGGCTCGTACAGCTGAGGCA +
Preference number: 4 (lower is better)
Translates to: RGPGGVLKKTDLNGKKAGSGDPG*ARTAEA
Trigger: TGCCTCAGCTGTACGAGCTCAACCGGGATCTCCTGA...CCCAGCTTTCTTCCCGTTCAAGTCTGTTTTCTTCAGGACACCACCTGGACCTCT
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000020208.5
CDS-3UTR TCA 90 bp AGTCTTGCCCTGGATGTGGGCTTGAAGGGCGGTGAGGAGAGAGTGGATCAGGGGTTCTCCAGGTCAGGGTaGATTCACTTGTGCAAATCA +
Preference number: 4 (lower is better)
Translates to: SLALDVGLKGGEERVDQGFSRSG*IHLCKS
Trigger: TGATTTGCACAAGTGAATTCACCCTGACCTGGAGAA...CCCCTGATCCACTCTCTCCTCACCGCCCTTCAAGCCCACATCCAGGGCAAGACT
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000020208.5
CDS-3UTR GCA 90 bp AGTCTTGCCCTGGATGTGGGCTTGAAGGGCGGTGAGGAGAGAGTGGATCAGGGGCCTGTAGCCAAACCTTaGCAATCACTTTCAAGTCCT +
Preference number: 4 (lower is better)
Translates to: SLALDVGLKGGEERVDQGPVAKP*QSLSSP
Trigger: AGGACTTGAAAGTGATTGGCAAGGTTTGGCTACAGG...CCCCTGATCCACTCTCTCCTCACCGCCCTTCAAGCCCACATCCAGGGCAAGACT
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000020208.5
CDS-3UTR CCA 90 bp AGAGGTCCAGGTGGTGTCCTGAAGAAAACAGACTTGAACGGGAAGAAAGCTGGGCTTGGGAGCCAATGGTaGCTTCTTAAGCTCCGCGGC +
Preference number: 4 (lower is better)
Translates to: RGPGGVLKKTDLNGKKAGLGSQW*LLKLRG
Trigger: GCCGCGGAGCTTAAGAAGCCACCATTGGCTCCCAAG...CCCAGCTTTCTTCCCGTTCAAGTCTGTTTTCTTCAGGACACCACCTGGACCTCT
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000020208.5
CDS-3UTR CCA 90 bp AGAGGTCCAGGTGGTGTCCTGAAGAAAACAGACTTGAACGGGAAGAAAGCTGGGGCTTCAGGGCCAGGTTaGCACATCGAGGGCTCATCT +
Preference number: 4 (lower is better)
Translates to: RGPGGVLKKTDLNGKKAGASGPG*HIEGSS
Trigger: AGATGAGCCCTCGATGTGCCAACCTGGCCCTGAAGC...CCCAGCTTTCTTCCCGTTCAAGTCTGTTTTCTTCAGGACACCACCTGGACCTCT
54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000020208.5
CDS-3UTR CCA 90 bp GCTCCAGAGCACGTGTACCGAAGATATTTTTCAGGGACCCACAGGAGACATCTATGTCTGGGATCCAGATaGGAGCCTTTGCCCCGAGGG +
Preference number: 4 (lower is better)
Translates to: APEHVYRRYFSGTHRRHLCLGSR*EPLPRG
Trigger: CCCTCGGGGCAAAGGCTCCCATCTGGATCCCAGACA...TAGATGTCTCCTGTGGGTCCCTGAAAAATATCTTCGGTACACGTGCTCTGGAGC
54% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000020208.5
CDS-3UTR CCA 90 bp AGAGGTCCAGGTGGTGTCCTGAAGAAAACAGACTTGAACGGGAAGAAAGCTGGGTGGCTTGGGAGCCAATaGTGGCTTCTTAAGCTCCGC +
Preference number: 4 (lower is better)
Translates to: RGPGGVLKKTDLNGKKAGWLGSQ*WLLKLR
Trigger: GCGGAGCTTAAGAAGCCACCATTGGCTCCCAAGCCA...CCCAGCTTTCTTCCCGTTCAAGTCTGTTTTCTTCAGGACACCACCTGGACCTCT
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000020208.5
CDS-3UTR GCA 90 bp GAAAGGCTGAAGCAGGCCAAACCATTGGGAATGCCACTGAAGTTCACAGGCATTCAAGGTGATCGCTGCTaGGTCAGGACCTCTTTGAGC +
Preference number: 4 (lower is better)
Translates to: ERLKQAKPLGMPLKFTGIQGDRC*VRTSLS
Trigger: GCTCAAAGAGGTCCTGACGCAGCAGCGATCACCTTG...AATGCCTGTGAACTTCAGTGGCATTCCCAATGGTTTGGCCTGCTTCAGCCTTTC
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000020208.5
CDS-3UTR CCA 90 bp AGTCTTGCCCTGGATGTGGGCTTGAAGGGCGGTGAGGAGAGAGTGGATCAGGGGGTATACGGTAGTAAGTaGATTTCTAAAGGACCGAGA +
Preference number: 4 (lower is better)
Translates to: SLALDVGLKGGEERVDQGVYGSK*ISKGPR
Trigger: TCTCGGTCCTTTAGAAATCCACTTACTACCGTATAC...CCCCTGATCCACTCTCTCCTCACCGCCCTTCAAGCCCACATCCAGGGCAAGACT
52% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000020208.5
CDS-3UTR TCA 90 bp AGAGGTCCAGGTGGTGTCCTGAAGAAAACAGACTTGAACGGGAAGAAAGCTGGGGTTGTTCTGTCCAGGTaGGCATTCGCTCTTCCAGTT +
Preference number: 4 (lower is better)
Translates to: RGPGGVLKKTDLNGKKAGVVLSR*AFALPV
Trigger: AACTGGAAGAGCGAATGCTCACCTGGACAGAACAAC...CCCAGCTTTCTTCCCGTTCAAGTCTGTTTTCTTCAGGACACCACCTGGACCTCT
51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000020208.5
CDS-3UTR GCA 90 bp TATCTATCCTTAAGGATCGTGGCGTGCAGTGAGGTAGGGTTGACTTCTGGAAATGCGAAGACGAGCAGCTaGGTGTGTCTTCCTGGGCTT +
Preference number: 4 (lower is better)
Translates to: YLSLRIVACSEVGLTSGNAKTSS*VCLPGL
Trigger: AAGCCCAGGAAGACACACGCAGCTGCTCGTCTTCGC...ATTTCCAGAAGTCAACCCTACCTCACTGCACGCCACGATCCTTAAGGATAGATA
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000020208.5
CDS-3UTR GCA 90 bp TATCTATCCTTAAGGATCGTGGCGTGCAGTGAGGTAGGGTTGACTTCTGGAAATTCTTCCCACAGGCCCTaGAGTGGTGTCTTCTCCAGG +
Preference number: 4 (lower is better)
Translates to: YLSLRIVACSEVGLTSGNSSHRP*SGVFSR
Trigger: CCTGGAGAAGACACCACTGCAGGGCCTGTGGGAAGA...ATTTCCAGAAGTCAACCCTACCTCACTGCACGCCACGATCCTTAAGGATAGATA
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000020208.5
CDS-3UTR CCA 90 bp GCTCCAGAGCACGTGTACCGAAGATATTTTTCAGGGACCCACAGGAGACATCTAGCATCCTTCCCCTCCTaGGATGTTCCAGAACTGCAA +
Preference number: 4 (lower is better)
Translates to: APEHVYRRYFSGTHRRHLASFPS*DVPELQ
Trigger: TTGCAGTTCTGGAACATCCCAGGAGGGGAAGGATGC...TAGATGTCTCCTGTGGGTCCCTGAAAAATATCTTCGGTACACGTGCTCTGGAGC
51% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000020208.5
CDS-3UTR CCA 90 bp GCTCCAGAGCACGTGTACCGAAGATATTTTTCAGGGACCCACAGGAGACATCTACTATGGAGCTGGATATaGCCTCCAGCCAGTCATCTC +
Preference number: 4 (lower is better)
Translates to: APEHVYRRYFSGTHRRHLLWSWI*PPASHL
Trigger: GAGATGACTGGCTGGAGGCCATATCCAGCTCCATAG...TAGATGTCTCCTGTGGGTCCCTGAAAAATATCTTCGGTACACGTGCTCTGGAGC
51% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000020208.5
CDS-3UTR CCA 90 bp AGAGACATCCAAGAAAAACTGGACCTGCTACCTCTAGATCTGCTGTATCTGCAGGGTGGCTCTGGTGTCTaGGATCCAGATGGGAGCCTT +
Preference number: 4 (lower is better)
Translates to: RDIQEKLDLLPLDLLYLQGGSGV*DPDGSL
Trigger: AAGGCTCCCATCTGGATCCCAGACACCAGAGCCACC...CTGCAGATACAGCAGATCTAGAGGTAGCAGGTCCAGTTTTTCTTGGATGTCTCT
51% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000020208.5
CDS-3UTR TCA 90 bp CATTCTTGCACGGCTTTTGAGCAGTTTTTAATCCTTTCTGCTGCACCTCCACCTCCACACTGGCTTCTCTaGAGTCGGGTTGGGCATATC +
Preference number: 4 (lower is better)
Translates to: HSCTAFEQFLILSAAPPPPHWLL*SRVGHI
Trigger: GATATGCCCAACCCGACTTCAGAGAAGCCAGTGTGG...AGGTGGAGGTGCAGCAGAAAGGATTAAAAACTGCTCAAAAGCCGTGCAAGAATG
50% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000020208.5
CDS-3UTR TCA 90 bp AGAGACATCCAAGAAAAACTGGACCTGCTACCTCTAGATCTGCTGTATCTGCAGCAGAAGGCAGGTCACTaGGGCCAAGATGGAGAGCAT +
Preference number: 4 (lower is better)
Translates to: RDIQEKLDLLPLDLLYLQQKAGH*GQDGEH
Trigger: ATGCTCTCCATCTTGGCCTCAGTGACCTGCCTTCTG...CTGCAGATACAGCAGATCTAGAGGTAGCAGGTCCAGTTTTTCTTGGATGTCTCT
50% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000020208.5
CDS-3UTR TCA 90 bp AGAGACATCCAAGAAAAACTGGACCTGCTACCTCTAGATCTGCTGTATCTGCAGACATCCGGGGCTGCATaGCTTTCCGAGACAGCTTCA +
Preference number: 4 (lower is better)
Translates to: RDIQEKLDLLPLDLLYLQTSGAA*LSETAS
Trigger: TGAAGCTGTCTCGGAAAGTCATGCAGCCCCGGATGT...CTGCAGATACAGCAGATCTAGAGGTAGCAGGTCCAGTTTTTCTTGGATGTCTCT
50% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000020208.5
CDS-3UTR GCA 90 bp CATTCTTGCACGGCTTTTGAGCAGTTTTTAATCCTTTCTGCTGCACCTCCACCTCAGTGTCCTCCACACTaGTGGAGTTCTGCCATCCCA +
Preference number: 4 (lower is better)
Translates to: HSCTAFEQFLILSAAPPPQCPPH*WSSAIP
Trigger: TGGGATGGCAGAACTCCAGCAGTGTGGAGGACACTG...AGGTGGAGGTGCAGCAGAAAGGATTAAAAACTGCTCAAAAGCCGTGCAAGAATG
50% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000020208.5
CDS-3UTR GCA 90 bp GAAAGGCTGAAGCAGGCCAAACCATTGGGAATGCCACTGAAGTTCACAGGCATTTGTCTAGGATCAAGTTaGAGCTGGCCATCTGGAGCA +
Preference number: 4 (lower is better)
Translates to: ERLKQAKPLGMPLKFTGICLGSS*SWPSGA
Trigger: TGCTCCAGATGGCCAGCTGCAACTTGATCCTAGACA...AATGCCTGTGAACTTCAGTGGCATTCCCAATGGTTTGGCCTGCTTCAGCCTTTC
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000020208.5
CDS-3UTR GCA 90 bp TATCTATCCTTAAGGATCGTGGCGTGCAGTGAGGTAGGGTTGACTTCTGGAAATGCGGGGATTTTCTTCTaGTTCCTCCCTGACGGGATG +
Preference number: 4 (lower is better)
Translates to: YLSLRIVACSEVGLTSGNAGIFF*FLPDGM
Trigger: CATCCCGTCAGGGAGGAAGCAGAAGAAAATCCCCGC...ATTTCCAGAAGTCAACCCTACCTCACTGCACGCCACGATCCTTAAGGATAGATA
50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000020208.5
CDS-3UTR TCA 90 bp AGAGGTCCAGGTGGTGTCCTGAAGAAAACAGACTTGAACGGGAAGAAAGCTGGGTCTTGGGTGTCTCTGTaGTCTACAGAGTCTTCTAGA +
Preference number: 4 (lower is better)
Translates to: RGPGGVLKKTDLNGKKAGSWVSL*STESSR
Trigger: TCTAGAAGACTCTGTAGATCACAGAGACACCCAAGA...CCCAGCTTTCTTCCCGTTCAAGTCTGTTTTCTTCAGGACACCACCTGGACCTCT
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000020208.5
CDS-3UTR TCA 90 bp GAAAGGCTGAAGCAGGCCAAACCATTGGGAATGCCACTGAAGTTCACAGGCATTCTAGGCGACAGCTGGTaGTCTAATTTCTGTAGCTCT +
Preference number: 4 (lower is better)
Translates to: ERLKQAKPLGMPLKFTGILGDSW*SNFCSS
Trigger: AGAGCTACAGAAATTAGATCACCAGCTGTCGCCTAG...AATGCCTGTGAACTTCAGTGGCATTCCCAATGGTTTGGCCTGCTTCAGCCTTTC
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000020208.5
CDS-3UTR TCA 90 bp GCTCCAGAGCACGTGTACCGAAGATATTTTTCAGGGACCCACAGGAGACATCTAAATACTGTGCCTTCCTaGAATGCGTCTATCCACCTC +
Preference number: 4 (lower is better)
Translates to: APEHVYRRYFSGTHRRHLNTVPS*NASIHL
Trigger: GAGGTGGATAGACGCATTTCAGGAAGGCACAGTATT...TAGATGTCTCCTGTGGGTCCCTGAAAAATATCTTCGGTACACGTGCTCTGGAGC
49% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000020208.5
CDS-3UTR GCA 90 bp GAAAGGCTGAAGCAGGCCAAACCATTGGGAATGCCACTGAAGTTCACAGGCATTTCCCTGGCTCTTCAGTaGTTTCACCAGGAGTATCTA +
Preference number: 4 (lower is better)
Translates to: ERLKQAKPLGMPLKFTGISLALQ*FHQEYL
Trigger: TAGATACTCCTGGTGAAAGCACTGAAGAGCCAGGGA...AATGCCTGTGAACTTCAGTGGCATTCCCAATGGTTTGGCCTGCTTCAGCCTTTC
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000020208.5
CDS-3UTR CCA 90 bp AGAGACATCCAAGAAAAACTGGACCTGCTACCTCTAGATCTGCTGTATCTGCAGCCTCACCTCGTCCACTaGTCCCTGGTTATACAAAGC +
Preference number: 4 (lower is better)
Translates to: RDIQEKLDLLPLDLLYLQPHLVH*SLVIQS
Trigger: GCTTTGTATAACCAGGGACCAGTGGACGAGGTGAGG...CTGCAGATACAGCAGATCTAGAGGTAGCAGGTCCAGTTTTTCTTGGATGTCTCT
49% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000020208.5
CDS-3UTR CCA 90 bp CATTCTTGCACGGCTTTTGAGCAGTTTTTAATCCTTTCTGCTGCACCTCCACCTTTGCAGCTGGCCATCTaGAGCATTGTAGGGCTCTTC +
Preference number: 4 (lower is better)
Translates to: HSCTAFEQFLILSAAPPPLQLAI*SIVGLF
Trigger: GAAGAGCCCTACAATGCTCCAGATGGCCAGCTGCAA...AGGTGGAGGTGCAGCAGAAAGGATTAAAAACTGCTCAAAAGCCGTGCAAGAATG
49% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000020208.5
CDS-3UTR CCA 90 bp GACTACAGGAACCAGGGAAAAGAGCACAAACAGTCTGAAGGACAGAAGAACAGGACATCCCAGACTGCATaGGTGTGGTGTAGAGAAGAG +
Preference number: 4 (lower is better)
Translates to: DYRNQGKEHKQSEGQKNRTSQTA*VWCREE
Trigger: CTCTTCTCTACACCACACCCATGCAGTCTGGGATGT...CCTGTTCTTCTGTCCTTCAGACTGTTTGTGCTCTTTTCCCTGGTTCCTGTAGTC
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000020208.5
CDS-3UTR TCA 90 bp AGAGACATCCAAGAAAAACTGGACCTGCTACCTCTAGATCTGCTGTATCTGCAGCCAGAACTGCAAGGCTaGTGTCTAGGATCAAGTTGC +
Preference number: 4 (lower is better)
Translates to: RDIQEKLDLLPLDLLYLQPELQG*CLGSSC
Trigger: GCAACTTGATCCTAGACATCAGCCTTGCAGTTCTGG...CTGCAGATACAGCAGATCTAGAGGTAGCAGGTCCAGTTTTTCTTGGATGTCTCT
48% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000020208.5
CDS-3UTR TCA 90 bp GAAAGGCTGAAGCAGGCCAAACCATTGGGAATGCCACTGAAGTTCACAGGCATTTGTACTGAATCTGCATaGGCTTCTGAAAGTTGTCCC +
Preference number: 4 (lower is better)
Translates to: ERLKQAKPLGMPLKFTGICTESA*ASESCP
Trigger: GGGACAACTTTCAGAAGCTCATGCAGATTCAGTACA...AATGCCTGTGAACTTCAGTGGCATTCCCAATGGTTTGGCCTGCTTCAGCCTTTC
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000020208.5
CDS-3UTR CCA 90 bp TATCTATCCTTAAGGATCGTGGCGTGCAGTGAGGTAGGGTTGACTTCTGGAAATCGGGACTTTTGGTTTTaGCGCAATTGCCGGTTTGGT +
Preference number: 4 (lower is better)
Translates to: YLSLRIVACSEVGLTSGNRDFWF*RNCRFG
Trigger: ACCAAACCGGCAATTGCGCCAAAACCAAAAGTCCCG...ATTTCCAGAAGTCAACCCTACCTCACTGCACGCCACGATCCTTAAGGATAGATA
48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000020208.5
CDS-3UTR TCA 90 bp TATCTATCCTTAAGGATCGTGGCGTGCAGTGAGGTAGGGTTGACTTCTGGAAATCAGGACTTCACCTTTTaGGATTCCAGGCTGCAGTTT +
Preference number: 4 (lower is better)
Translates to: YLSLRIVACSEVGLTSGNQDFTF*DSRLQF
Trigger: AAACTGCAGCCTGGAATCTCAAAAGGTGAAGTCCTG...ATTTCCAGAAGTCAACCCTACCTCACTGCACGCCACGATCCTTAAGGATAGATA
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000020208.5
CDS-3UTR TCA 90 bp GACTACAGGAACCAGGGAAAAGAGCACAAACAGTCTGAAGGACAGAAGAACAGGTGTTCCTTCCAGCCATaGCAAAGGGCAAATTCTCAT +
Preference number: 4 (lower is better)
Translates to: DYRNQGKEHKQSEGQKNRCSFQP*QRANSH
Trigger: ATGAGAATTTGCCCTTTGTCATGGCTGGAAGGAACA...CCTGTTCTTCTGTCCTTCAGACTGTTTGTGCTCTTTTCCCTGGTTCCTGTAGTC
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000020208.5
CDS-3UTR TCA 90 bp AGAGACATCCAAGAAAAACTGGACCTGCTACCTCTAGATCTGCTGTATCTGCAGATCTGCATGAGCTTCTaGAAGTTGTCCCCTTGCTTC +
Preference number: 4 (lower is better)
Translates to: RDIQEKLDLLPLDLLYLQICMSF*KLSPCF
Trigger: GAAGCAAGGGGACAACTTTCAGAAGCTCATGCAGAT...CTGCAGATACAGCAGATCTAGAGGTAGCAGGTCCAGTTTTTCTTGGATGTCTCT
47% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000020208.5
CDS-3UTR TCA 90 bp CATTCTTGCACGGCTTTTGAGCAGTTTTTAATCCTTTCTGCTGCACCTCCACCTCCTTTGTGCAGCAGCTaGAACACTTTAGACTCTGAG +
Preference number: 4 (lower is better)
Translates to: HSCTAFEQFLILSAAPPPPLCSS*NTLDSE
Trigger: CTCAGAGTCTAAAGTGTTTCAGCTGCTGCACAAAGG...AGGTGGAGGTGCAGCAGAAAGGATTAAAAACTGCTCAAAAGCCGTGCAAGAATG
47% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000020208.5
CDS-3UTR CCA 90 bp ATGCCACTGAAGTTCACAGGCATTGGGATTAAATCAGAATTCTACAGTAATGCACAGGTAGCTGGTGGCTaGTCAGTGCAGGCTGATGTG +
Preference number: 4 (lower is better)
Translates to: MPLKFTGIGIKSEFYSNAQVAGG*SVQADV
Trigger: CACATCAGCCTGCACTGACCAGCCACCAGCTACCTG...TGCATTACTGTAGAATTCTGATTTAATCCCAATGCCTGTGAACTTCAGTGGCAT
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000020208.5
CDS-3UTR CCA 90 bp GACTACAGGAACCAGGGAAAAGAGCACAAACAGTCTGAAGGACAGAAGAACAGGAAGATTCCTTTTGTATaGGAGGAGCTGACACTTCCG +
Preference number: 4 (lower is better)
Translates to: DYRNQGKEHKQSEGQKNRKIPFV*EELTLP
Trigger: CGGAAGTGTCAGCTCCTCCCATACAAAAGGAATCTT...CCTGTTCTTCTGTCCTTCAGACTGTTTGTGCTCTTTTCCCTGGTTCCTGTAGTC
47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000020208.5
CDS-3UTR CCA 90 bp CATTCTTGCACGGCTTTTGAGCAGTTTTTAATCCTTTCTGCTGCACCTCCACCTTGGCATACTCTTCTATaGAGCTGGATATGGCCTCCA +
Preference number: 4 (lower is better)
Translates to: HSCTAFEQFLILSAAPPPWHTLL*SWIWPP
Trigger: TGGAGGCCATATCCAGCTCCATAGAAGAGTATGCCA...AGGTGGAGGTGCAGCAGAAAGGATTAAAAACTGCTCAAAAGCCGTGCAAGAATG
47% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000020208.5
CDS-3UTR TCA 90 bp GACTACAGGAACCAGGGAAAAGAGCACAAACAGTCTGAAGGACAGAAGAACAGGCAAAGTAGGTTTCTTTaGGGGTGGATGCTTAATGTC +
Preference number: 4 (lower is better)
Translates to: DYRNQGKEHKQSEGQKNRQSRFL*GWMLNV
Trigger: GACATTAAGCATCCACCCTCAAAGAAACCTACTTTG...CCTGTTCTTCTGTCCTTCAGACTGTTTGTGCTCTTTTCCCTGGTTCCTGTAGTC
46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000020208.5
CDS-3UTR TCA 90 bp AGAGACATCCAAGAAAAACTGGACCTGCTACCTCTAGATCTGCTGTATCTGCAGCATCTTGACAAGTCTTaGGAGTCTGAGATTCATCCC +
Preference number: 4 (lower is better)
Translates to: RDIQEKLDLLPLDLLYLQHLDKS*ESEIHP
Trigger: GGGATGAATCTCAGACTCTCAAGACTTGTCAAGATG...CTGCAGATACAGCAGATCTAGAGGTAGCAGGTCCAGTTTTTCTTGGATGTCTCT
46% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000020208.5
CDS-3UTR TCA 90 bp TATCTATCCTTAAGGATCGTGGCGTGCAGTGAGGTAGGGTTGACTTCTGGAAATTTGACCTCTGTCTTCTaGCTAATTCCATCTGAAGCC +
Preference number: 4 (lower is better)
Translates to: YLSLRIVACSEVGLTSGNLTSVF*LIPSEA
Trigger: GGCTTCAGATGGAATTAGTCAGAAGACAGAGGTCAA...ATTTCCAGAAGTCAACCCTACCTCACTGCACGCCACGATCCTTAAGGATAGATA
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000020208.5
CDS-3UTR TCA 90 bp TGCAGAAAATGTGACATCCTTTTAGATAGAAATACCATCACTGACTTGGCCTCATTTGTCCACAGCAGGTaGCACGCCAGAACCACTGCT +
Preference number: 4 (lower is better)
Translates to: CRKCDILLDRNTITDLASFVHSR*HARTTA
Trigger: AGCAGTGGTTCTGGCGTGTCACCTGCTGTGGACAAA...TGAGGCCAAGTCAGTGATGGTATTTCTATCTAAAAGGATGTCACATTTTCTGCA
46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000020208.5
CDS-3UTR TCA 90 bp AGAGACATCCAAGAAAAACTGGACCTGCTACCTCTAGATCTGCTGTATCTGCAGTCATCTCGAATTCTCTaGCAACTGCAGCAAATCCTG +
Preference number: 4 (lower is better)
Translates to: RDIQEKLDLLPLDLLYLQSSRIL*QLQQIL
Trigger: CAGGATTTGCTGCAGTTGTCAGAGAATTCGAGATGA...CTGCAGATACAGCAGATCTAGAGGTAGCAGGTCCAGTTTTTCTTGGATGTCTCT
46% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000020208.5
CDS-3UTR TCA 90 bp TATCTATCCTTAAGGATCGTGGCGTGCAGTGAGGTAGGGTTGACTTCTGGAAATATCTTTAACTCGTTCTaGTATGCCTCCTGGGTAGGT +
Preference number: 4 (lower is better)
Translates to: YLSLRIVACSEVGLTSGNIFNSF*YASWVG
Trigger: ACCTACCCAGGAGGCATATCAGAACGAGTTAAAGAT...ATTTCCAGAAGTCAACCCTACCTCACTGCACGCCACGATCCTTAAGGATAGATA
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000020208.5
CDS-3UTR TCA 90 bp CATTCTTGCACGGCTTTTGAGCAGTTTTTAATCCTTTCTGCTGCACCTCCACCTTGCTGGGGCAGAATGTaGTTCTTTTCTTGGCATACT +
Preference number: 4 (lower is better)
Translates to: HSCTAFEQFLILSAAPPPCWGRM*FFSWHT
Trigger: AGTATGCCAAGAAAAGAATCACATTCTGCCCCAGCA...AGGTGGAGGTGCAGCAGAAAGGATTAAAAACTGCTCAAAAGCCGTGCAAGAATG
46% GC, longest homopolymer 5 nt, total homopolymer stretches 17 nt.
Matches the following 1 transcripts:
ENSMUST00000020208.5
CDS-3UTR TCA 90 bp TATCTATCCTTAAGGATCGTGGCGTGCAGTGAGGTAGGGTTGACTTCTGGAAATTTCTTCTTTCCTTTCTaGGTCCTCGTCAAGACTCCT +
Preference number: 4 (lower is better)
Translates to: YLSLRIVACSEVGLTSGNFFFPF*VLVKTP
Trigger: AGGAGTCTTGACGAGGACTCAGAAAGGAAAGAAGAA...ATTTCCAGAAGTCAACCCTACCTCACTGCACGCCACGATCCTTAAGGATAGATA
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000020208.5
CDS-3UTR GCA 90 bp AGAGGTCCAGGTGGTGTCCTGAAGAAAACAGACTTGAACGGGAAGAAAGCTGGGGGAAGAAGACACATCTaGAAATTCAATTCTGATCTG +
Preference number: 4 (lower is better)
Translates to: RGPGGVLKKTDLNGKKAGGRRHI*KFNSDL
Trigger: CAGATCAGAATTGAATTTGCAGATGTGTCTTCTTCC...CCCAGCTTTCTTCCCGTTCAAGTCTGTTTTCTTCAGGACACCACCTGGACCTCT
46% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000020208.5
CDS-3UTR GCA 90 bp AGAGACATCCAAGAAAAACTGGACCTGCTACCTCTAGATCTGCTGTATCTGCAGTCCATGGCTTTTTACTaGCCTTGGATCTGTAGAGGT +
Preference number: 4 (lower is better)
Translates to: RDIQEKLDLLPLDLLYLQSMAFY*PWICRG
Trigger: ACCTCTACAGATCCAAGGGCAGTAAAAAGCCATGGA...CTGCAGATACAGCAGATCTAGAGGTAGCAGGTCCAGTTTTTCTTGGATGTCTCT
46% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 1 transcripts:
ENSMUST00000020208.5
CDS-3UTR CCA 90 bp CATTCTTGCACGGCTTTTGAGCAGTTTTTAATCCTTTCTGCTGCACCTCCACCTTGCCTGGTGCAACTATaGTCACCATTCATTTCTGGT +
Preference number: 4 (lower is better)
Translates to: HSCTAFEQFLILSAAPPPCLVQL*SPFISG
Trigger: ACCAGAAATGAATGGTGACCATAGTTGCACCAGGCA...AGGTGGAGGTGCAGCAGAAAGGATTAAAAACTGCTCAAAAGCCGTGCAAGAATG
46% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000020208.5
CDS-3UTR CCA 90 bp CATTCTTGCACGGCTTTTGAGCAGTTTTTAATCCTTTCTGCTGCACCTCCACCTATTTTGCTCTTGGCTTaGTTAGGGAAACGGAAGGCT +
Preference number: 4 (lower is better)
Translates to: HSCTAFEQFLILSAAPPPILLLA*LGKRKA
Trigger: AGCCTTCCGTTTCCCTAACCAAGCCAAGAGCAAAAT...AGGTGGAGGTGCAGCAGAAAGGATTAAAAACTGCTCAAAAGCCGTGCAAGAATG
46% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 1 transcripts:
ENSMUST00000020208.5
CDS-3UTR CCA 90 bp GACTACAGGAACCAGGGAAAAGAGCACAAACAGTCTGAAGGACAGAAGAACAGGATGGTGTCATTGGCATaGTTAGCTACCTCTATGACA +
Preference number: 4 (lower is better)
Translates to: DYRNQGKEHKQSEGQKNRMVSLA*LATSMT
Trigger: TGTCATAGAGGTAGCTAACCATGCCAATGACACCAT...CCTGTTCTTCTGTCCTTCAGACTGTTTGTGCTCTTTTCCCTGGTTCCTGTAGTC
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000020208.5
3UTR CAA 72 bp CTATCCTTAAGGATCGTGGCGTGCAGTGAGGTAGGGTaGACTTCTGGAAATTCCAGCATTTTTGACTACAGT +
Preference number: 4 (lower is better)
Translates to: LSLRIVACSEVG*TSGNSSIFDYS
Trigger: ACTGTAGTCAAAAATGCTGGAATTTCCAGAAGTCAACCCTACCTCACTGCACGCCACGATCCTTAAGGATAG
46% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000020208.5
CDS-3UTR TCA 90 bp TGCAGAAAATGTGACATCCTTTTAGATAGAAATACCATCACTGACTTGGCCTCATCACATGAATCAGTGTaGCCACGGCTCTCTGCACTG +
Preference number: 4 (lower is better)
Translates to: CRKCDILLDRNTITDLASSHESV*PRLSAL
Trigger: CAGTGCAGAGAGCCGTGGTCACACTGATTCATGTGA...TGAGGCCAAGTCAGTGATGGTATTTCTATCTAAAAGGATGTCACATTTTCTGCA
44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000020208.5
CDS-3UTR GCA 90 bp CATTCTTGCACGGCTTTTGAGCAGTTTTTAATCCTTTCTGCTGCACCTCCACCTTTTGAGATTCCAGGCTaGAGTTTTCTGCAGAATGTG +
Preference number: 4 (lower is better)
Translates to: HSCTAFEQFLILSAAPPPFEIPG*SFLQNV
Trigger: CACATTCTGCAGAAAACTGCAGCCTGGAATCTCAAA...AGGTGGAGGTGCAGCAGAAAGGATTAAAAACTGCTCAAAAGCCGTGCAAGAATG
44% GC, longest homopolymer 5 nt, total homopolymer stretches 17 nt.
Matches the following 1 transcripts:
ENSMUST00000020208.5
CDS-3UTR GCA 90 bp CATTCTTGCACGGCTTTTGAGCAGTTTTTAATCCTTTCTGCTGCACCTCCACCTATACGTAAAACACCATaGCTTTGTGCAGCAGCTGAA +
Preference number: 4 (lower is better)
Translates to: HSCTAFEQFLILSAAPPPIRKTP*LCAAAE
Trigger: TTCAGCTGCTGCACAAAGGCATGGTGTTTTACGTAT...AGGTGGAGGTGCAGCAGAAAGGATTAAAAACTGCTCAAAAGCCGTGCAAGAATG
44% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 1 transcripts:
ENSMUST00000020208.5
CDS-3UTR CCA 90 bp CATTCTTGCACGGCTTTTGAGCAGTTTTTAATCCTTTCTGCTGCACCTCCACCTGGTTGCACAATTTCATaGTGTCCACTTAAGCTGTAC +
Preference number: 4 (lower is better)
Translates to: HSCTAFEQFLILSAAPPPGCTIS*CPLKLY
Trigger: GTACAGCTTAAGTGGACACCATGAAATTGTGCAACC...AGGTGGAGGTGCAGCAGAAAGGATTAAAAACTGCTCAAAAGCCGTGCAAGAATG
44% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000020208.5
CDS-3UTR TCA 90 bp ATGCCACTGAAGTTCACAGGCATTGGGATTAAATCAGAATTCTACAGTAATGCAGCGTCAGGACCTCTTTaGGCTTCTCTTCTAAGATGC +
Preference number: 4 (lower is better)
Translates to: MPLKFTGIGIKSEFYSNAASGPL*ASLLRC
Trigger: GCATCTTAGAAGAGAAGCTCAAAGAGGTCCTGACGC...TGCATTACTGTAGAATTCTGATTTAATCCCAATGCCTGTGAACTTCAGTGGCAT
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000020208.5
CDS-3UTR TCA 90 bp TCACAGGCATTGGGATTAAATCAGAATTCTACAGTAATGCAGATTGCTTTGCAATGCGGCAGAACTAGCTaGGAGGATGAAAGAACGCTC +
Preference number: 4 (lower is better)
Translates to: SQALGLNQNSTVMQIALQCGRTS*EDERTL
Trigger: GAGCGTTCTTTCATCCTCTCAGCTAGTTCTGCCGCA...TTGCAAAGCAATCTGCATTACTGTAGAATTCTGATTTAATCCCAATGCCTGTGA
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000020208.5
CDS-3UTR TCA 90 bp TCACAGGCATTGGGATTAAATCAGAATTCTACAGTAATGCAGATTGCTTTGCAACTTGAAGGAGACTTGTaGTTTCCGGGAGACCCAACC +
Preference number: 4 (lower is better)
Translates to: SQALGLNQNSTVMQIALQLEGDL*FPGDPT
Trigger: GGTTGGGTCTCCCGGAAATCACAAGTCTCCTTCAAG...TTGCAAAGCAATCTGCATTACTGTAGAATTCTGATTTAATCCCAATGCCTGTGA
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000020208.5
CDS-3UTR GCA 90 bp ATGCCACTGAAGTTCACAGGCATTGGGATTAAATCAGAATTCTACAGTAATGCAAAAAACATCCGGGGCTaGATGACTTTCCGAGACAGC +
Preference number: 4 (lower is better)
Translates to: MPLKFTGIGIKSEFYSNAKNIRG*MTFRDS
Trigger: GCTGTCTCGGAAAGTCATGCAGCCCCGGATGTTTTT...TGCATTACTGTAGAATTCTGATTTAATCCCAATGCCTGTGAACTTCAGTGGCAT
43% GC, longest homopolymer 6 nt, total homopolymer stretches 10 nt.
Matches the following 1 transcripts:
ENSMUST00000020208.5
CDS-3UTR CCA 90 bp TCACAGGCATTGGGATTAAATCAGAATTCTACAGTAATGCAGATTGCTTTGCAACTGCGTGTGTCTTCCTaGGCTTGGGAGTTGGAAACT +
Preference number: 4 (lower is better)
Translates to: SQALGLNQNSTVMQIALQLRVSS*AWELET
Trigger: AGTTTCCAACTCCCAAGCCCAGGAAGACACACGCAG...TTGCAAAGCAATCTGCATTACTGTAGAATTCTGATTTAATCCCAATGCCTGTGA
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000020208.5
CDS-3UTR CCA 90 bp ATGCCACTGAAGTTCACAGGCATTGGGATTAAATCAGAATTCTACAGTAATGCATTAACTGCACTGCTCTaGCCCCAGGACTTCACCTTT +
Preference number: 4 (lower is better)
Translates to: MPLKFTGIGIKSEFYSNALTALL*PQDFTF
Trigger: AAAGGTGAAGTCCTGGGGCCAGAGCAGTGCAGTTAA...TGCATTACTGTAGAATTCTGATTTAATCCCAATGCCTGTGAACTTCAGTGGCAT
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000020208.5
CDS-3UTR CCA 90 bp TCACAGGCATTGGGATTAAATCAGAATTCTACAGTAATGCAGATTGCTTTGCAATGTCCTCCACACTGCTaGAGTTCTGCCATCCCAAGT +
Preference number: 4 (lower is better)
Translates to: SQALGLNQNSTVMQIALQCPPHC*SSAIPS
Trigger: ACTTGGGATGGCAGAACTCCAGCAGTGTGGAGGACA...TTGCAAAGCAATCTGCATTACTGTAGAATTCTGATTTAATCCCAATGCCTGTGA
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000020208.5
CDS-3UTR CCA 90 bp TGCAGAAAATGTGACATCCTTTTAGATAGAAATACCATCACTGACTTGGCCTCACAGACTGCATGGGTGTaGTGTAGAGAAGAGCATCGT +
Preference number: 4 (lower is better)
Translates to: CRKCDILLDRNTITDLASQTAWV*CREEHR
Trigger: ACGATGCTCTTCTCTACACCACACCCATGCAGTCTG...TGAGGCCAAGTCAGTGATGGTATTTCTATCTAAAAGGATGTCACATTTTCTGCA
43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000020208.5
CDS-3UTR CCA 90 bp ATGCCACTGAAGTTCACAGGCATTGGGATTAAATCAGAATTCTACAGTAATGCAGCTTTTTACTGCCCTTaGATCTGTAGAGGTAGCCGC +
Preference number: 4 (lower is better)
Translates to: MPLKFTGIGIKSEFYSNAAFYCP*ICRGSR
Trigger: GCGGCTACCTCTACAGATCCAAGGGCAGTAAAAAGC...TGCATTACTGTAGAATTCTGATTTAATCCCAATGCCTGTGAACTTCAGTGGCAT
43% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000020208.5
CDS-3UTR TCA 90 bp ATGCCACTGAAGTTCACAGGCATTGGGATTAAATCAGAATTCTACAGTAATGCATACTGGACTCGGAGCTaGCATCATCTTCATCAGAAC +
Preference number: 4 (lower is better)
Translates to: MPLKFTGIGIKSEFYSNAYWTRS*HHLHQN
Trigger: GTTCTGATGAAGATGATGTCAGCTCCGAGTCCAGTA...TGCATTACTGTAGAATTCTGATTTAATCCCAATGCCTGTGAACTTCAGTGGCAT
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000020208.5
CDS-3UTR TCA 90 bp TGCAGAAAATGTGACATCCTTTTAGATAGAAATACCATCACTGACTTGGCCTCAAAGCCTAATAAAGGCTaGCTTTCCAAAGCTGCCACG +
Preference number: 4 (lower is better)
Translates to: CRKCDILLDRNTITDLASKPNKG*LSKAAT
Trigger: CGTGGCAGCTTTGGAAAGTCAGCCTTTATTAGGCTT...TGAGGCCAAGTCAGTGATGGTATTTCTATCTAAAAGGATGTCACATTTTCTGCA
42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000020208.5
CDS-3UTR GCA 90 bp TCACAGGCATTGGGATTAAATCAGAATTCTACAGTAATGCAGATTGCTTTGCAACAGGCTGATGTGACTTaGTTAGGCAAGCTCAAAGGC +
Preference number: 4 (lower is better)
Translates to: SQALGLNQNSTVMQIALQQADVT*LGKLKG
Trigger: GCCTTTGAGCTTGCCTAAGCAAGTCACATCAGCCTG...TTGCAAAGCAATCTGCATTACTGTAGAATTCTGATTTAATCCCAATGCCTGTGA
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000020208.5
CDS-3UTR GCA 90 bp AGAGACATCCAAGAAAAACTGGACCTGCTACCTCTAGATCTGCTGTATCTGCAGGAATTCTCTGACAACTaGAGCAAATCCTGGATTTTT +
Preference number: 4 (lower is better)
Translates to: RDIQEKLDLLPLDLLYLQEFSDN*SKSWIF
Trigger: AAAAATCCAGGATTTGCTGCAGTTGTCAGAGAATTC...CTGCAGATACAGCAGATCTAGAGGTAGCAGGTCCAGTTTTTCTTGGATGTCTCT
42% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000020208.5
CDS-3UTR CCA 90 bp ATGCCACTGAAGTTCACAGGCATTGGGATTAAATCAGAATTCTACAGTAATGCATCTCTGAAGTCGGGTTaGGCATATCAAAGGGTGATG +
Preference number: 4 (lower is better)
Translates to: MPLKFTGIGIKSEFYSNASLKSG*AYQRVM
Trigger: CATCACCCTTTGATATGCCCAACCCGACTTCAGAGA...TGCATTACTGTAGAATTCTGATTTAATCCCAATGCCTGTGAACTTCAGTGGCAT
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000020208.5
CDS-3UTR CCA 90 bp ATGCCACTGAAGTTCACAGGCATTGGGATTAAATCAGAATTCTACAGTAATGCAAAATCATACACATGGTaGCTCTGGTGTCTGGGATCC +
Preference number: 4 (lower is better)
Translates to: MPLKFTGIGIKSEFYSNAKSYTW*LWCLGS
Trigger: GGATCCCAGACACCAGAGCCACCATGTGTATGATTT...TGCATTACTGTAGAATTCTGATTTAATCCCAATGCCTGTGAACTTCAGTGGCAT
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000020208.5
CDS-3UTR CCA 90 bp TGCAGAAAATGTGACATCCTTTTAGATAGAAATACCATCACTGACTTGGCCTCATGCAAATCATACACATaGTGGCTCTGGTGTCTGGGA +
Preference number: 4 (lower is better)
Translates to: CRKCDILLDRNTITDLASCKSYT*WLWCLG
Trigger: TCCCAGACACCAGAGCCACCATGTGTATGATTTGCA...TGAGGCCAAGTCAGTGATGGTATTTCTATCTAAAAGGATGTCACATTTTCTGCA
42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000020208.5
CDS-3UTR TCA 90 bp ATGCCACTGAAGTTCACAGGCATTGGGATTAAATCAGAATTCTACAGTAATGCAAAAGGTAGAATAGGATaGGGTAACTTCCACACTGGC +
Preference number: 4 (lower is better)
Translates to: MPLKFTGIGIKSEFYSNAKGRIG*GNFHTG
Trigger: GCCAGTGTGGAAGTTACCTCATCCTATTCTACCTTT...TGCATTACTGTAGAATTCTGATTTAATCCCAATGCCTGTGAACTTCAGTGGCAT
41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000020208.5
CDS-3UTR TCA 90 bp TGCAGAAAATGTGACATCCTTTTAGATAGAAATACCATCACTGACTTGGCCTCACTTTCTCGGAGCTCATaGTCTCCTTGGCAATATGAT +
Preference number: 4 (lower is better)
Translates to: CRKCDILLDRNTITDLASLSRSS*SPWQYD
Trigger: ATCATATTGCCAAGGAGATCATGAGCTCCGAGAAAG...TGAGGCCAAGTCAGTGATGGTATTTCTATCTAAAAGGATGTCACATTTTCTGCA
41% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000020208.5
CDS-3UTR TCA 90 bp TCACAGGCATTGGGATTAAATCAGAATTCTACAGTAATGCAGATTGCTTTGCAAGTCTTCTGTGTTTGCTaGCACTTCTTTGAGAGCAGC +
Preference number: 4 (lower is better)
Translates to: SQALGLNQNSTVMQIALQVFCVC*HFFESS
Trigger: GCTGCTCTCAAAGAAGTGTCAGCAAACACAGAAGAC...TTGCAAAGCAATCTGCATTACTGTAGAATTCTGATTTAATCCCAATGCCTGTGA
41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000020208.5
CDS-3UTR GCA 90 bp ATGCCACTGAAGTTCACAGGCATTGGGATTAAATCAGAATTCTACAGTAATGCAGGCTCTAAAACAAGCTaGTCTACACACTGGGTTTCT +
Preference number: 4 (lower is better)
Translates to: MPLKFTGIGIKSEFYSNAGSKTS*STHWVS
Trigger: AGAAACCCAGTGTGTAGAGCAGCTTGTTTTAGAGCC...TGCATTACTGTAGAATTCTGATTTAATCCCAATGCCTGTGAACTTCAGTGGCAT
41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000020208.5
CDS-3UTR CCA 90 bp TGCAGAAAATGTGACATCCTTTTAGATAGAAATACCATCACTGACTTGGCCTCACAGAATGTGCCTTCGTaGGCTTACTTCTCTTCTCTT +
Preference number: 4 (lower is better)
Translates to: CRKCDILLDRNTITDLASQNVPS*AYFSSL
Trigger: AAGAGAAGAGAAGTAAGCCCACGAAGGCACATTCTG...TGAGGCCAAGTCAGTGATGGTATTTCTATCTAAAAGGATGTCACATTTTCTGCA
41% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000020208.5
CDS-3UTR TCA 90 bp TGCAGAAAATGTGACATCCTTTTAGATAGAAATACCATCACTGACTTGGCCTCACTGACTAATTCCATCTaGAGCCACTCTTTTGTTCTC +
Preference number: 4 (lower is better)
Translates to: CRKCDILLDRNTITDLASLTNSI*SHSFVL
Trigger: GAGAACAAAAGAGTGGCTTCAGATGGAATTAGTCAG...TGAGGCCAAGTCAGTGATGGTATTTCTATCTAAAAGGATGTCACATTTTCTGCA
40% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 1 transcripts:
ENSMUST00000020208.5
CDS-3UTR GCA 90 bp TCACAGGCATTGGGATTAAATCAGAATTCTACAGTAATGCAGATTGCTTTGCAAGGATTTTTCTTGCACTaGTCATCCAGCAAAGCTACG +
Preference number: 4 (lower is better)
Translates to: SQALGLNQNSTVMQIALQGFFLH*SSSKAT
Trigger: CGTAGCTTTGCTGGATGAGCAGTGCAAGAAAAATCC...TTGCAAAGCAATCTGCATTACTGTAGAATTCTGATTTAATCCCAATGCCTGTGA
40% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000020208.5
CDS-3UTR CCA 90 bp TCACAGGCATTGGGATTAAATCAGAATTCTACAGTAATGCAGATTGCTTTGCAAAATTTCTGTAGCTCTTaGAAGCAGTGCTCGCACACT +
Preference number: 4 (lower is better)
Translates to: SQALGLNQNSTVMQIALQNFCSS*KQCSHT
Trigger: AGTGTGCGAGCACTGCTTCCAAGAGCTACAGAAATT...TTGCAAAGCAATCTGCATTACTGTAGAATTCTGATTTAATCCCAATGCCTGTGA
40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000020208.5
CDS-3UTR GCA 90 bp TCACAGGCATTGGGATTAAATCAGAATTCTACAGTAATGCAGATTGCTTTGCAACCCCGGAAGTCAATATaGAAAAGCTTTAACACATCC +
Preference number: 4 (lower is better)
Translates to: SQALGLNQNSTVMQIALQPRKSI*KSFNTS
Trigger: GGATGTGTTAAAGCTTTTGCATATTGACTTCCGGGG...TTGCAAAGCAATCTGCATTACTGTAGAATTCTGATTTAATCCCAATGCCTGTGA
39% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000020208.5
CDS-3UTR TCA 90 bp TCACAGGCATTGGGATTAAATCAGAATTCTACAGTAATGCAGATTGCTTTGCAAATTTGTCTCCTTACCTaGAGAGCTCTTTTCTACAAG +
Preference number: 4 (lower is better)
Translates to: SQALGLNQNSTVMQIALQICLLT*RALFYK
Trigger: CTTGTAGAAAAGAGCTCTTCAGGTAAGGAGACAAAT...TTGCAAAGCAATCTGCATTACTGTAGAATTCTGATTTAATCCCAATGCCTGTGA
38% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000020208.5
CDS-3UTR GCA 90 bp TCACAGGCATTGGGATTAAATCAGAATTCTACAGTAATGCAGATTGCTTTGCAACAATATGATGAACTTTaGTTTTCATCCCAGCATCTT +
Preference number: 4 (lower is better)
Translates to: SQALGLNQNSTVMQIALQQYDEL*FSSQHL
Trigger: AAGATGCTGGGATGAAAAGCAAAGTTCATCATATTG...TTGCAAAGCAATCTGCATTACTGTAGAATTCTGATTTAATCCCAATGCCTGTGA
36% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000020208.5
3UTR CAA 72 bp TGTGACATCCTTTTAGATAGAAATACCATCACTGACTaGGCCTCAAAACTCTTAAGAATAATAGAGGGTATT +
Preference number: 4 (lower is better)
Translates to: CDILLDRNTITD*ASKLLRIIEGI
Trigger: AATACCCTCTATTATTCTTAAGAGTTTTGAGGCCAAGTCAGTGATGGTATTTCTATCTAAAAGGATGTCACA
35% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000020208.5
CDS CCA 90 bp GCTGCACAGCTTTCTGTGAGCCGACTGAGTCCTGTCCGCCACTGTTaGAATCCCCTGTCAGTGCCCTCTGGTTTGCTGGCCTCACCTCGT +
Preference number: 5 (lower is better)
Translates to: AAQLSVSRLSPVRHC*NPLSVPSGLLASPR
Trigger: ACGAGGTGAGGCCAGCAAACCAGAGGGCACTGACAGGGGATTCCAACAGTGGCGGACAGGACTCAGTCGGCTCACAGAAAGCTGTGCAGC
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000020208.5
CDS CCA 90 bp TTCCCTGGCTCTTCAGTGCTTTCACCAGGAGTATCTACATGCTTCTaGCGGCGAAGACGAGCAGCTGCGTGTGTCTTCCTGGGCTTGGGA +
Preference number: 5 (lower is better)
Translates to: FPGSSVLSPGVSTCF*RRRRAAACVFLGLG
Trigger: TCCCAAGCCCAGGAAGACACACGCAGCTGCTCGTCTTCGCCGCCAGAAGCATGTAGATACTCCTGGTGAAAGCACTGAAGAGCCAGGGAA
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000020208.5
CDS GCA 90 bp TTTGAGTTCCCTGGCTCTTCAGTGCTTTCACCAGGAGTATCTACATaGTTCTGGCGGCGAAGACGAGCAGCTGCGTGTGTCTTCCTGGGC +
Preference number: 5 (lower is better)
Translates to: FEFPGSSVLSPGVST*FWRRRRAAACVFLG
Trigger: GCCCAGGAAGACACACGCAGCTGCTCGTCTTCGCCGCCAGAAGCATGTAGATACTCCTGGTGAAAGCACTGAAGAGCCAGGGAACTCAAA
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000020208.5
CDS GCA 90 bp GGAGAGAATCCGGTCATCCAAAGACTCCGCCCTCTGACCGTTAACTaGACTGCTCTGGCCCCAGGACTTCACCTTTTGAGATTCCAGGCT +
Preference number: 5 (lower is better)
Translates to: GENPVIQRLRPLTVN*TALAPGLHLLRFQA
Trigger: AGCCTGGAATCTCAAAAGGTGAAGTCCTGGGGCCAGAGCAGTGCAGTTAACGGTCAGAGGGCGGAGTCTTTGGATGACCGGATTCTCTCC
56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000020208.5
CDS GCA 90 bp AGGATCTGGTTAAGGATCCGGTCCTCAATCACGGGCTTCCCGAGCTaGCTGGATGCATGGGCTACAGCACCCCGGAAGTCAATATGCAAA +
Preference number: 5 (lower is better)
Translates to: RIWLRIRSSITGFPS*LDAWATAPRKSICK
Trigger: TTTGCATATTGACTTCCGGGGTGCTGTAGCCCATGCATCCAGGCAGCTCGGGAAGCCCGTGATTGAGGACCGGATCCTTAACCAGATCCT
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000020208.5
CDS CCA 90 bp AGGATCCGGTCCTCAATCACGGGCTTCCCGAGCTGCCTGGATGCATaGGCTACAGCACCCCGGAAGTCAATATGCAAAAGCTTTAACACA +
Preference number: 5 (lower is better)
Translates to: RIRSSITGFPSCLDA*ATAPRKSICKSFNT
Trigger: TGTGTTAAAGCTTTTGCATATTGACTTCCGGGGTGCTGTAGCCCATGCATCCAGGCAGCTCGGGAAGCCCGTGATTGAGGACCGGATCCT
54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000020208.5
CDS GCA 90 bp CCAGGAGGCAAGAAGAGCCATTGTTTGAGTTCCCTGGCTCTTCAGTaGTTTCACCAGGAGTATCTACATGCTTCTGGCGGCGAAGACGAG +
Preference number: 5 (lower is better)
Translates to: PGGKKSHCLSSLALQ*FHQEYLHASGGEDE
Trigger: CTCGTCTTCGCCGCCAGAAGCATGTAGATACTCCTGGTGAAAGCACTGAAGAGCCAGGGAACTCAAACAATGGCTCTTCTTGCCTCCTGG
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000020208.5
CDS CCA 90 bp CTACATGCTTCTGGCGGCGAAGACGAGCAGCTGCGTGTGTCTTCCTaGGCTTGGGAGTTGGAAACTTTGAGGTATACGGTAGTAAGTGGA +
Preference number: 5 (lower is better)
Translates to: LHASGGEDEQLRVSS*AWELETLRYTVVSG
Trigger: TCCACTTACTACCGTATACCTCAAAGTTTCCAACTCCCAAGCCCAGGAAGACACACGCAGCTGCTCGTCTTCGCCGCCAGAAGCATGTAG
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000020208.5
CDS CCA 90 bp CTCATACTCGGGTATCTCCTCATAATGGCGGACATTTTCATACTCTaGCCCGAAGTCGCCTGTACAGGACGTGTGCCTGGAGAGAATCCG +
Preference number: 5 (lower is better)
Translates to: LILGYLLIMADIFIL*PEVACTGRVPGENP
Trigger: CGGATTCTCTCCAGGCACACGTCCTGTACAGGCGACTTCGGGCCAGAGTATGAAAATGTCCGCCATTATGAGGAGATACCCGAGTATGAG
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000020208.5
CDS CCA 90 bp CTATTGATGACTTCCTCATCAGAAGGCAGGTCACTGAGGCCAAGATaGAGAGCATCCTTCCCCTCCTGGGATGTTCCAGAACTGCAAGGC +
Preference number: 5 (lower is better)
Translates to: LLMTSSSEGRSLRPR*RASFPSWDVPELQG
Trigger: GCCTTGCAGTTCTGGAACATCCCAGGAGGGGAAGGATGCTCTCCATCTTGGCCTCAGTGACCTGCCTTCTGATGAGGAAGTCATCAATAG
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000020208.5
CDS CCA 90 bp GGTGAATTCACTTGTGCAAATCATACACATGGTGGCTCTGGTGTCTaGGATCCAGATGGGAGCCTTTGCCCCGAGGGGGCTAACTTCTTC +
Preference number: 5 (lower is better)
Translates to: GEFTCANHTHGGSGV*DPDGSLCPEGANFF
Trigger: GAAGAAGTTAGCCCCCTCGGGGCAAAGGCTCCCATCTGGATCCCAGACACCAGAGCCACCATGTGTATGATTTGCACAAGTGAATTCACC
53% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000020208.5
CDS-3UTR CAA 90 bp AGTCTTGCCCTGGATGTGGGCTTGAAGGGCGGTGAGGAGAGAGTGGATCAGGGGAATCCTGGATTTTTCTaGCACTGCTCATCCAGCAAA +
Preference number: 5 (lower is better)
Translates to: SLALDVGLKGGEERVDQGNPGFF*HCSSSK
Trigger: TTTGCTGGATGAGCAGTGCAAGAAAAATCCAGGATT...CCCCTGATCCACTCTCTCCTCACCGCCCTTCAAGCCCACATCCAGGGCAAGACT
53% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000020208.5
CDS TCA 90 bp CAATCTTCCCACAGGCCCTGCAGTGGTGTCTTCTCCAGGTCAGGGTaGATTCACTTGTGCAAATCATACACATGGTGGCTCTGGTGTCTG +
Preference number: 5 (lower is better)
Translates to: QSSHRPCSGVFSRSG*IHLCKSYTWWLWCL
Trigger: CAGACACCAGAGCCACCATGTGTATGATTTGCACAAGTGAATTCACCCTGACCTGGAGAAGACACCACTGCAGGGCCTGTGGGAAGATTG
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000020208.5
CDS CCA 90 bp GCTTCTGGCGGCGAAGACGAGCAGCTGCGTGTGTCTTCCTGGGCTTaGGAGTTGGAAACTTTGAGGTATACGGTAGTAAGTGGATTTCTA +
Preference number: 5 (lower is better)
Translates to: ASGGEDEQLRVSSWA*ELETLRYTVVSGFL
Trigger: TAGAAATCCACTTACTACCGTATACCTCAAAGTTTCCAACTCCCAAGCCCAGGAAGACACACGCAGCTGCTCGTCTTCGCCGCCAGAAGC
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000020208.5
CDS CCA 90 bp ATCCCCTGTCAGTGCCCTCTGGTTTGCTGGCCTCACCTCGTCCACTaGTCCCTGGTTATACAAAGCATTCTGACGAAGAACACTGACTTT +
Preference number: 5 (lower is better)
Translates to: IPCQCPLVCWPHLVH*SLVIQSILTKNTDF
Trigger: AAAGTCAGTGTTCTTCGTCAGAATGCTTTGTATAACCAGGGACCAGTGGACGAGGTGAGGCCAGCAAACCAGAGGGCACTGACAGGGGAT
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000020208.5
CDS CCA 90 bp CTCTTCTCCTGTAGCCAAACCTTGCCAATCACTTTCAAGTCCTTTTaGCTCTCTAGCGAGCGGATGTCCTGCAGAGACATCCCCGTGTTG +
Preference number: 5 (lower is better)
Translates to: LFSCSQTLPITFKSF*LSSERMSCRDIPVL
Trigger: CAACACGGGGATGTCTCTGCAGGACATCCGCTCGCTAGAGAGCCAAAAGGACTTGAAAGTGATTGGCAAGGTTTGGCTACAGGAGAAGAG
52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000020208.5
CDS TCA 90 bp ACGCGTTTCAAGGCCTCTGGGCTCCCTGAAAAAGGTAGAATAGGATaGGGTAACTTCCACACTGGCTTCTCTGAAGTCGGGTTGGGCATA +
Preference number: 5 (lower is better)
Translates to: TRFKASGLPEKGRIG*GNFHTGFSEVGLGI
Trigger: TATGCCCAACCCGACTTCAGAGAAGCCAGTGTGGAAGTTACCTCATCCTATTCTACCTTTTTCAGGGAGCCCAGAGGCCTTGAAACGCGT
51% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000020208.5
CDS CCA 90 bp GCTTTTCATCCCAGCATCTTCATCCTGTTTATCCTCCAGGGGGTCTaGCTCGCCTTTACTGGACTCGGAGCTGACATCATCTTCATCAGA +
Preference number: 5 (lower is better)
Translates to: AFHPSIFILFILQGV*LAFTGLGADIIFIR
Trigger: TCTGATGAAGATGATGTCAGCTCCGAGTCCAGTAAAGGCGAGCCAGACCCCCTGGAGGATAAACAGGATGAAGATGCTGGGATGAAAAGC
51% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000020208.5
CDS-3UTR CAA 90 bp GCTCCAGAGCACGTGTACCGAAGATATTTTTCAGGGACCCACAGGAGACATCTATCGGGACTTTTGGTTTaGGCGCAATTGCCGGTTTGG +
Preference number: 5 (lower is better)
Translates to: APEHVYRRYFSGTHRRHLSGLLV*AQLPVW
Trigger: CCAAACCGGCAATTGCGCCAAAACCAAAAGTCCCGA...TAGATGTCTCCTGTGGGTCCCTGAAAAATATCTTCGGTACACGTGCTCTGGAGC
51% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000020208.5
CDS GCA 90 bp CTGTCAGAAGTCAAACTAGAATCTGTATCTAAAGAAGGCGTTTGCTaGTGCACAGCTTTCTGTGAGCCGACTGAGTCCTGTCCGCCACTG +
Preference number: 5 (lower is better)
Translates to: LSEVKLESVSKEGVC*CTAFCEPTESCPPL
Trigger: CAGTGGCGGACAGGACTCAGTCGGCTCACAGAAAGCTGTGCAGCAGCAAACGCCTTCTTTAGATACAGATTCTAGTTTGACTTCTGACAG
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000020208.5
CDS-3UTR CAA 90 bp GAAAGGCTGAAGCAGGCCAAACCATTGGGAATGCCACTGAAGTTCACAGGCATTTTCATCCCTAGGAAGTaGTGGGTGGCAGTTGTGATG +
Preference number: 5 (lower is better)
Translates to: ERLKQAKPLGMPLKFTGIFIPRK*WVAVVM
Trigger: CATCACAACTGCCACCCACAACTTCCTAGGGATGAA...AATGCCTGTGAACTTCAGTGGCATTCCCAATGGTTTGGCCTGCTTCAGCCTTTC
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000020208.5
CDS-3UTR CAA 90 bp GCTCCAGAGCACGTGTACCGAAGATATTTTTCAGGGACCCACAGGAGACATCTAACAGGGATTTTGCTCTaGGCTTGGTTAGGGAAACGG +
Preference number: 5 (lower is better)
Translates to: APEHVYRRYFSGTHRRHLTGILL*AWLGKR
Trigger: CCGTTTCCCTAACCAAGCCAAGAGCAAAATCCCTGT...TAGATGTCTCCTGTGGGTCCCTGAAAAATATCTTCGGTACACGTGCTCTGGAGC
50% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000020208.5
CDS GCA 90 bp TTCCTGAAATGCGTCTATCCACCTCTGCGTGGAGTGGGCATCGTCTaGCTTAAATACGTAAAACACCATGCCTTTGTGCAGCAGCTGAAA +
Preference number: 5 (lower is better)
Translates to: FLKCVYPPLRGVGIV*LKYVKHHAFVQQLK
Trigger: TTTCAGCTGCTGCACAAAGGCATGGTGTTTTACGTATTTAAGGCAGACGATGCCCACTCCACGCAGAGGTGGATAGACGCATTTCAGGAA
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000020208.5
CDS-3UTR CAA 90 bp GACTACAGGAACCAGGGAAAAGAGCACAAACAGTCTGAAGGACAGAAGAACAGGGATTTTGCTCTTGGCTaGGTTAGGGAAACGGAAGGC +
Preference number: 5 (lower is better)
Translates to: DYRNQGKEHKQSEGQKNRDFALG*VRETEG
Trigger: GCCTTCCGTTTCCCTAACCAAGCCAAGAGCAAAATC...CCTGTTCTTCTGTCCTTCAGACTGTTTGTGCTCTTTTCCCTGGTTCCTGTAGTC
49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000020208.5
CDS-3UTR CAA 90 bp CATTCTTGCACGGCTTTTGAGCAGTTTTTAATCCTTTCTGCTGCACCTCCACCTTTCTTCGGAGGGTCTTaGCAAGGCTTGTTACACCGG +
Preference number: 5 (lower is better)
Translates to: HSCTAFEQFLILSAAPPPFFGGS*QGLLHR
Trigger: CCGGTGTAACAAGCCTTGCAAAGACCCTCCGAAGAA...AGGTGGAGGTGCAGCAGAAAGGATTAAAAACTGCTCAAAAGCCGTGCAAGAATG
49% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000020208.5
CDS-3UTR CAA 90 bp CATTCTTGCACGGCTTTTGAGCAGTTTTTAATCCTTTCTGCTGCACCTCCACCTAAAAACCCGCCCGGGTaGCACAATTTCATGGTGTCC +
Preference number: 5 (lower is better)
Translates to: HSCTAFEQFLILSAAPPPKNPPG*HNFMVS
Trigger: GGACACCATGAAATTGTGCAACCCGGGCGGGTTTTT...AGGTGGAGGTGCAGCAGAAAGGATTAAAAACTGCTCAAAAGCCGTGCAAGAATG
49% GC, longest homopolymer 5 nt, total homopolymer stretches 14 nt.
Matches the following 1 transcripts:
ENSMUST00000020208.5
CDS TCA 90 bp CTGAGTACTGCACTGTGTGTAAGTAGTCTCTTTGTCCACAGCAGGTaGCACGCCAGAACCACTGCTGTCAGAAGTCAAACTAGAATCTGT +
Preference number: 5 (lower is better)
Translates to: LSTALCVSSLFVHSR*HARTTAVRSQTRIC
Trigger: ACAGATTCTAGTTTGACTTCTGACAGCAGTGGTTCTGGCGTGTCACCTGCTGTGGACAAAGAGACTACTTACACACAGTGCAGTACTCAG
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000020208.5
CDS TCA 90 bp CTTTCCTTTCTGAGTCCTCGTCAAGACTCCTGCTGGGGCAGAATGTaGTTCTTTTCTTGGCATACTCTTCTATGGAGCTGGATATGGCCT +
Preference number: 5 (lower is better)
Translates to: LSFLSPRQDSCWGRM*FFSWHTLLWSWIWP
Trigger: AGGCCATATCCAGCTCCATAGAAGAGTATGCCAAGAAAAGAATCACATTCTGCCCCAGCAGGAGTCTTGACGAGGACTCAGAAAGGAAAG
48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000020208.5
CDS CCA 90 bp ATCTTGACAAGTCTTGAGAGTCTGAGATTCATCCCTAGGAAGTTGTaGGTGGCAGTTGTGATGAGCGGGAACTTTTTCAAAGCCGGTCAG +
Preference number: 5 (lower is better)
Translates to: ILTSLESLRFIPRKL*VAVVMSGNFFKAGQ
Trigger: CTGACCGGCTTTGAAAAAGTTCCCGCTCATCACAACTGCCACCCACAACTTCCTAGGGATGAATCTCAGACTCTCAAGACTTGTCAAGAT
48% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000020208.5
CDS-3UTR CAA 90 bp TATCTATCCTTAAGGATCGTGGCGTGCAGTGAGGTAGGGTTGACTTCTGGAAATTGTGTCTTCCTGGGCTaGGGAGTTGGAAACTTTGAG +
Preference number: 5 (lower is better)
Translates to: YLSLRIVACSEVGLTSGNCVFLG*GVGNFE
Trigger: CTCAAAGTTTCCAACTCCCAAGCCCAGGAAGACACA...ATTTCCAGAAGTCAACCCTACCTCACTGCACGCCACGATCCTTAAGGATAGATA
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000020208.5
CDS-3UTR CAA 90 bp TGCAGAAAATGTGACATCCTTTTAGATAGAAATACCATCACTGACTTGGCCTCATCAGTGCCCTCTGGTTaGCTGGCCTCACCTCGTCCA +
Preference number: 5 (lower is better)
Translates to: CRKCDILLDRNTITDLASSVPSG*LASPRP
Trigger: TGGACGAGGTGAGGCCAGCAAACCAGAGGGCACTGA...TGAGGCCAAGTCAGTGATGGTATTTCTATCTAAAAGGATGTCACATTTTCTGCA
48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000020208.5
CDS-3UTR CAA 90 bp TGCAGAAAATGTGACATCCTTTTAGATAGAAATACCATCACTGACTTGGCCTCATGCTTCAGGGCCAGGTaGGCACATCGAGGGCTCATC +
Preference number: 5 (lower is better)
Translates to: CRKCDILLDRNTITDLASCFRAR*AHRGLI
Trigger: GATGAGCCCTCGATGTGCCAACCTGGCCCTGAAGCA...TGAGGCCAAGTCAGTGATGGTATTTCTATCTAAAAGGATGTCACATTTTCTGCA
48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000020208.5
CDS-3UTR CAA 90 bp TGCAGAAAATGTGACATCCTTTTAGATAGAAATACCATCACTGACTTGGCCTCAGGCACTTTTCGCTGCTaGAATCCCAGCTACTCCCCC +
Preference number: 5 (lower is better)
Translates to: CRKCDILLDRNTITDLASGTFRC*NPSYSP
Trigger: GGGGGAGTAGCTGGGATTCAAGCAGCGAAAAGTGCC...TGAGGCCAAGTCAGTGATGGTATTTCTATCTAAAAGGATGTCACATTTTCTGCA
47% GC, longest homopolymer 5 nt, total homopolymer stretches 12 nt.
Matches the following 1 transcripts:
ENSMUST00000020208.5
CDS-3UTR CAA 90 bp CATTCTTGCACGGCTTTTGAGCAGTTTTTAATCCTTTCTGCTGCACCTCCACCTTGCGTCAGGACCTCTTaGAGCTTCTCTTCTAAGATG +
Preference number: 5 (lower is better)
Translates to: HSCTAFEQFLILSAAPPPCVRTS*SFSSKM
Trigger: CATCTTAGAAGAGAAGCTCAAAGAGGTCCTGACGCA...AGGTGGAGGTGCAGCAGAAAGGATTAAAAACTGCTCAAAAGCCGTGCAAGAATG
47% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000020208.5
CDS-3UTR CAA 90 bp GCTCCAGAGCACGTGTACCGAAGATATTTTTCAGGGACCCACAGGAGACATCTATGGGAGTTGGAAACTTaGAGGTATACGGTAGTAAGT +
Preference number: 5 (lower is better)
Translates to: APEHVYRRYFSGTHRRHLWELET*RYTVVS
Trigger: ACTTACTACCGTATACCTCAAAGTTTCCAACTCCCA...TAGATGTCTCCTGTGGGTCCCTGAAAAATATCTTCGGTACACGTGCTCTGGAGC
47% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000020208.5
CDS-3UTR CAA 90 bp GCTCCAGAGCACGTGTACCGAAGATATTTTTCAGGGACCCACAGGAGACATCTAATCAGCAATTCTTTGTaGTTCTGTCCAGGTGAGCAT +
Preference number: 5 (lower is better)
Translates to: APEHVYRRYFSGTHRRHLISNSL*FCPGEH
Trigger: ATGCTCACCTGGACAGAACAACAAAGAATTGCTGAT...TAGATGTCTCCTGTGGGTCCCTGAAAAATATCTTCGGTACACGTGCTCTGGAGC
47% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000020208.5
CDS-3UTR CAA 90 bp GAAAGGCTGAAGCAGGCCAAACCATTGGGAATGCCACTGAAGTTCACAGGCATTGATATCAGCAATTCTTaGTTGTTCTGTCCAGGTGAG +
Preference number: 5 (lower is better)
Translates to: ERLKQAKPLGMPLKFTGIDISNS*LFCPGE
Trigger: CTCACCTGGACAGAACAACAAAGAATTGCTGATATC...AATGCCTGTGAACTTCAGTGGCATTCCCAATGGTTTGGCCTGCTTCAGCCTTTC
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000020208.5
CDS-3UTR CAA 90 bp AGAGACATCCAAGAAAAACTGGACCTGCTACCTCTAGATCTGCTGTATCTGCAGTGCTTCATGGTGTCATaGGCATGGTTAGCTACCTCT +
Preference number: 5 (lower is better)
Translates to: RDIQEKLDLLPLDLLYLQCFMVS*AWLATS
Trigger: AGAGGTAGCTAACCATGCCAATGACACCATGAAGCA...CTGCAGATACAGCAGATCTAGAGGTAGCAGGTCCAGTTTTTCTTGGATGTCTCT
47% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000020208.5
CDS-3UTR CAA 90 bp AGAGACATCCAAGAAAAACTGGACCTGCTACCTCTAGATCTGCTGTATCTGCAGCTGACGACAAGGCACTaGAAGGAGACTTGTGATTTC +
Preference number: 5 (lower is better)
Translates to: RDIQEKLDLLPLDLLYLQLTTRH*KETCDF
Trigger: GAAATCACAAGTCTCCTTCAAGTGCCTTGTCGTCAG...CTGCAGATACAGCAGATCTAGAGGTAGCAGGTCCAGTTTTTCTTGGATGTCTCT
47% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000020208.5
CDS TCA 90 bp GAGAGGATGAAAGAACGCTCTACACTTTCAATCTTTAACTCGTTCTaGTATGCCTCCTGGGTAGGTTTTCTGACCTTCATTCCAGCCAGC +
Preference number: 5 (lower is better)
Translates to: ERMKERSTLSIFNSF*YASWVGFLTFIPAS
Trigger: GCTGGCTGGAATGAAGGTCAGAAAACCTACCCAGGAGGCATATCAGAACGAGTTAAAGATTGAAAGTGTAGAGCGTTCTTTCATCCTCTC
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000020208.5
CDS GCA 90 bp ATGAGCGGGAACTTTTTCAAAGCCGGTCAGGGAAGAAGACACATCTaGAAATTCAATTCTGATCTGCCTGGTGCAACTATGGTCACCATT +
Preference number: 5 (lower is better)
Translates to: MSGNFFKAGQGRRHI*KFNSDLPGATMVTI
Trigger: AATGGTGACCATAGTTGCACCAGGCAGATCAGAATTGAATTTGCAGATGTGTCTTCTTCCCTGACCGGCTTTGAAAAAGTTCCCGCTCAT
46% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000020208.5
CDS-3UTR CAA 90 bp AGAGACATCCAAGAAAAACTGGACCTGCTACCTCTAGATCTGCTGTATCTGCAGAGCATGTTGTTCAGTTaGTACATCCCAGACTGCATG +
Preference number: 5 (lower is better)
Translates to: RDIQEKLDLLPLDLLYLQSMLFS*YIPDCM
Trigger: CATGCAGTCTGGGATGTACAAACTGAACAACATGCT...CTGCAGATACAGCAGATCTAGAGGTAGCAGGTCCAGTTTTTCTTGGATGTCTCT
46% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000020208.5
CDS TCA 90 bp TCCAGGTTCAAAGTAGGTTTCTTTGAGGGTGGATGCTTAATGTCTTaGACAACTGAGTTTGTCGGGACTTTTGGTTTTGGCGCAATTGCC +
Preference number: 5 (lower is better)
Translates to: SRFKVGFFEGGCLMS*TTEFVGTFGFGAIA
Trigger: GGCAATTGCGCCAAAACCAAAAGTCCCGACAAACTCAGTTGTTCAAGACATTAAGCATCCACCCTCAAAGAAACCTACTTTGAACCTGGA
44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000020208.5
CDS TCA 90 bp GTTGCACAATTTCATGGTGTCCACTTAAGCTGTACTGAATCTGCATaGGCTTCTGAAAGTTGTCCCCTTGCTTCATGGTGTCATTGGCAT +
Preference number: 5 (lower is better)
Translates to: VAQFHGVHLSCTESA*ASESCPLASWCHWH
Trigger: ATGCCAATGACACCATGAAGCAAGGGGACAACTTTCAGAAGCTCATGCAGATTCAGTACAGCTTAAGTGGACACCATGAAATTGTGCAAC
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000020208.5
CDS-3UTR CAA 90 bp ATGCCACTGAAGTTCACAGGCATTGGGATTAAATCAGAATTCTACAGTAATGCATCCTGGGCTTGGGAGTaGGAAACTTTGAGGTATACG +
Preference number: 5 (lower is better)
Translates to: MPLKFTGIGIKSEFYSNASWAWE*ETLRYT
Trigger: CGTATACCTCAAAGTTTCCAACTCCCAAGCCCAGGA...TGCATTACTGTAGAATTCTGATTTAATCCCAATGCCTGTGAACTTCAGTGGCAT
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000020208.5
CDS-3UTR CAA 90 bp ATGCCACTGAAGTTCACAGGCATTGGGATTAAATCAGAATTCTACAGTAATGCACCAGGACTTCACCTTTaGAGATTCCAGGCTGCAGTT +
Preference number: 5 (lower is better)
Translates to: MPLKFTGIGIKSEFYSNAPGLHL*RFQAAV
Trigger: AACTGCAGCCTGGAATCTCAAAAGGTGAAGTCCTGG...TGCATTACTGTAGAATTCTGATTTAATCCCAATGCCTGTGAACTTCAGTGGCAT
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000020208.5
CDS-3UTR CAA 90 bp TCACAGGCATTGGGATTAAATCAGAATTCTACAGTAATGCAGATTGCTTTGCAAGGATCCCTGACATCCTaGCAATTAGACTTGCCAGTG +
Preference number: 5 (lower is better)
Translates to: SQALGLNQNSTVMQIALQGSLTS*QLDLPV
Trigger: CACTGGCAAGTCTAATTGCAAGGATGTCAGGGATCC...TTGCAAAGCAATCTGCATTACTGTAGAATTCTGATTTAATCCCAATGCCTGTGA
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000020208.5
CDS-3UTR CAA 90 bp AGAGACATCCAAGAAAAACTGGACCTGCTACCTCTAGATCTGCTGTATCTGCAGAACTGCAGGAACACGTaGGTAAAATATAATCACTGT +
Preference number: 5 (lower is better)
Translates to: RDIQEKLDLLPLDLLYLQNCRNT*VKYNHC
Trigger: ACAGTGATTATATTTTACCAACGTGTTCCTGCAGTT...CTGCAGATACAGCAGATCTAGAGGTAGCAGGTCCAGTTTTTCTTGGATGTCTCT
42% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000020208.5
CDS-3UTR CAA 90 bp CATTCTTGCACGGCTTTTGAGCAGTTTTTAATCCTTTCTGCTGCACCTCCACCTTCTTCATCAGAACTATaGATGACTTCCTCATCAGAA +
Preference number: 5 (lower is better)
Translates to: HSCTAFEQFLILSAAPPPSSSEL*MTSSSE
Trigger: TTCTGATGAGGAAGTCATCAATAGTTCTGATGAAGA...AGGTGGAGGTGCAGCAGAAAGGATTAAAAACTGCTCAAAAGCCGTGCAAGAATG
42% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000020208.5
CDS-3UTR CAA 90 bp TCACAGGCATTGGGATTAAATCAGAATTCTACAGTAATGCAGATTGCTTTGCAACTGAAAGTTGTCCCCTaGCTTCATGGTGTCATTGGC +
Preference number: 5 (lower is better)
Translates to: SQALGLNQNSTVMQIALQLKVVP*LHGVIG
Trigger: GCCAATGACACCATGAAGCAAGGGGACAACTTTCAG...TTGCAAAGCAATCTGCATTACTGTAGAATTCTGATTTAATCCCAATGCCTGTGA
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000020208.5
CDS-3UTR CAA 90 bp TGCAGAAAATGTGACATCCTTTTAGATAGAAATACCATCACTGACTTGGCCTCATTTGCTGACACTTCTTaGAGAGCAGCGGGGATTTTC +
Preference number: 5 (lower is better)
Translates to: CRKCDILLDRNTITDLASFADTS*RAAGIF
Trigger: GAAAATCCCCGCTGCTCTCAAAGAAGTGTCAGCAAA...TGAGGCCAAGTCAGTGATGGTATTTCTATCTAAAAGGATGTCACATTTTCTGCA
42% GC, longest homopolymer 4 nt, total homopolymer stretches 16 nt.
Matches the following 1 transcripts:
ENSMUST00000020208.5
CDS-3UTR CAA 90 bp TGCAGAAAATGTGACATCCTTTTAGATAGAAATACCATCACTGACTTGGCCTCACTAAGCCATACTTGTTaGATGAGCAAGCTTGGCACA +
Preference number: 5 (lower is better)
Translates to: CRKCDILLDRNTITDLASLSHTC*MSKLGT
Trigger: TGTGCCAAGCTTGCTCATCAAACAAGTATGGCTTAG...TGAGGCCAAGTCAGTGATGGTATTTCTATCTAAAAGGATGTCACATTTTCTGCA
41% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000020208.5
CDS GCA 90 bp TCGAATTCTCTGACAACTGCAGCAAATCCTGGATTTTTCTTGCACTaGTCATCCAGCAAAGCTACGTTCTTATCAAATTCTTTGATGTAT +
Preference number: 5 (lower is better)
Translates to: SNSLTTAANPGFFLH*SSSKATFLSNSLMY
Trigger: ATACATCAAAGAATTTGATAAGAACGTAGCTTTGCTGGATGAGCAGTGCAAGAAAAATCCAGGATTTGCTGCAGTTGTCAGAGAATTCGA
39% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000020208.5
CDS-3UTR CAA 90 bp TGCAGAAAATGTGACATCCTTTTAGATAGAAATACCATCACTGACTTGGCCTCATCTCTTCTAAGATGCTaGCCTTTAAAACAACTCCAC +
Preference number: 5 (lower is better)
Translates to: CRKCDILLDRNTITDLASSLLRC*PLKQLH
Trigger: GTGGAGTTGTTTTAAAGGCAAGCATCTTAGAAGAGA...TGAGGCCAAGTCAGTGATGGTATTTCTATCTAAAAGGATGTCACATTTTCTGCA
39% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 1 transcripts:
ENSMUST00000020208.5
CDS CAA 90 bp TGCTGCACAGCTTTCTGTGAGCCGACTGAGTCCTGTCCGCCACTGTaGGAATCCCCTGTCAGTGCCCTCTGGTTTGCTGGCCTCACCTCG +
Preference number: 6 (lower is better)
Translates to: CCTAFCEPTESCPPL*ESPVSALWFAGLTS
Trigger: CGAGGTGAGGCCAGCAAACCAGAGGGCACTGACAGGGGATTCCAACAGTGGCGGACAGGACTCAGTCGGCTCACAGAAAGCTGTGCAGCA
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000020208.5
CDS GCA 72 bp CCGGTCCTCAATCACGGGCTTCCCGAGCTGCCTGGATaGATGGGCTACAGCACCCCGGAAGTCAATATGCAA +
Preference number: 6 (lower is better)
Translates to: PVLNHGLPELPG*MGYSTPEVNMQ
Trigger: TTGCATATTGACTTCCGGGGTGCTGTAGCCCATGCATCCAGGCAGCTCGGGAAGCCCGTGATTGAGGACCGG
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000020208.5
CDS GCA 72 bp TTAAGGATCCGGTCCTCAATCACGGGCTTCCCGAGCTaGCTGGATGCATGGGCTACAGCACCCCGGAAGTCA +
Preference number: 6 (lower is better)
Translates to: LRIRSSITGFPS*LDAWATAPRKS
Trigger: TGACTTCCGGGGTGCTGTAGCCCATGCATCCAGGCAGCTCGGGAAGCCCGTGATTGAGGACCGGATCCTTAA
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000020208.5
CDS CCA 72 bp ACTCTGGCCCGAAGTCGCCTGTACAGGACGTGTGCCTaGAGAGAATCCGGTCATCCAAAGACTCCGCCCTCT +
Preference number: 6 (lower is better)
Translates to: TLARSRLYRTCA*RESGHPKTPPS
Trigger: AGAGGGCGGAGTCTTTGGATGACCGGATTCTCTCCAGGCACACGTCCTGTACAGGCGACTTCGGGCCAGAGT
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000020208.5
CDS CAA 72 bp CGCCACTGTTGGAATCCCCTGTCAGTGCCCTCTGGTTaGCTGGCCTCACCTCGTCCACTGGTCCCTGGTTAT +
Preference number: 6 (lower is better)
Translates to: RHCWNPLSVPSG*LASPRPLVPGY
Trigger: ATAACCAGGGACCAGTGGACGAGGTGAGGCCAGCAAACCAGAGGGCACTGACAGGGGATTCCAACAGTGGCG
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000020208.5
CDS CAA 72 bp GCTTTCTGTGAGCCGACTGAGTCCTGTCCGCCACTGTaGGAATCCCCTGTCAGTGCCCTCTGGTTTGCTGGC +
Preference number: 6 (lower is better)
Translates to: AFCEPTESCPPL*ESPVSALWFAG
Trigger: GCCAGCAAACCAGAGGGCACTGACAGGGGATTCCAACAGTGGCGGACAGGACTCAGTCGGCTCACAGAAAGC
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000020208.5
CDS TCA 72 bp CTGGAGAGAATCCGGTCATCCAAAGACTCCGCCCTCTaGCCGTTAACTGCACTGCTCTGGCCCCAGGACTTC +
Preference number: 6 (lower is better)
Translates to: LERIRSSKDSAL*PLTALLWPQDF
Trigger: GAAGTCCTGGGGCCAGAGCAGTGCAGTTAACGGTCAGAGGGCGGAGTCTTTGGATGACCGGATTCTCTCCAG
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000020208.5
CDS CAA 90 bp AGTCCTGTCCGCCACTGTTGGAATCCCCTGTCAGTGCCCTCTGGTTaGCTGGCCTCACCTCGTCCACTGGTCCCTGGTTATACAAAGCAT +
Preference number: 6 (lower is better)
Translates to: SPVRHCWNPLSVPSG*LASPRPLVPGYTKH
Trigger: ATGCTTTGTATAACCAGGGACCAGTGGACGAGGTGAGGCCAGCAAACCAGAGGGCACTGACAGGGGATTCCAACAGTGGCGGACAGGACT
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000020208.5
CDS GCA 72 bp CTGTGCCTCCCCGGGGAACCACAAGGTGATCGCTGCTaGGTCAGGACCTCTTTGAGCTTCTCTTCTAAGATG +
Preference number: 6 (lower is better)
Translates to: LCLPGEPQGDRC*VRTSLSFSSKM
Trigger: CATCTTAGAAGAGAAGCTCAAAGAGGTCCTGACGCAGCAGCGATCACCTTGTGGTTCCCCGGGGAGGCACAG
57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000020208.5
CDS CCA 72 bp GGAGCTGACACTTCCGGGTTACAGGTAGCTGGTGGCTaGTCAGTGCAGGCTGATGTGACTTGCTTAGGCAAG +
Preference number: 6 (lower is better)
Translates to: GADTSGLQVAGG*SVQADVTCLGK
Trigger: CTTGCCTAAGCAAGTCACATCAGCCTGCACTGACCAGCCACCAGCTACCTGTAACCCGGAAGTGTCAGCTCC
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000020208.5
CDS CCA 72 bp TCCTCAATCACGGGCTTCCCGAGCTGCCTGGATGCATaGGCTACAGCACCCCGGAAGTCAATATGCAAAAGC +
Preference number: 6 (lower is better)
Translates to: SSITGFPSCLDA*ATAPRKSICKS
Trigger: GCTTTTGCATATTGACTTCCGGGGTGCTGTAGCCCATGCATCCAGGCAGCTCGGGAAGCCCGTGATTGAGGA
57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000020208.5
CDS CCA 72 bp ACTTGTGCAAATCATACACATGGTGGCTCTGGTGTCTaGGATCCAGATGGGAGCCTTTGCCCCGAGGGGGCT +
Preference number: 6 (lower is better)
Translates to: TCANHTHGGSGV*DPDGSLCPEGA
Trigger: AGCCCCCTCGGGGCAAAGGCTCCCATCTGGATCCCAGACACCAGAGCCACCATGTGTATGATTTGCACAAGT
57% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000020208.5
CDS CAA 90 bp AAGTCGGGTTGGGCATATCAAAGGGTGATGCTGACGCGCCATGGTTaGGGGGCCCCGGATGGTGAAGGTAGTTTCTGTGCAGACCTTTCT +
Preference number: 6 (lower is better)
Translates to: KSGWAYQRVMLTRHG*GAPDGEGSFCADLS
Trigger: AGAAAGGTCTGCACAGAAACTACCTTCACCATCCGGGGCCCCCAAACCATGGCGCGTCAGCATCACCCTTTGATATGCCCAACCCGACTT
56% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000020208.5
CDS TCA 72 bp CGGGTTACAGGTAGCTGGTGGCTGGTCAGTGCAGGCTaGTGTGACTTGCTTAGGCAAGCTCAAAGGCTGAGT +
Preference number: 6 (lower is better)
Translates to: RVTGSWWLVSAG*CDLLRQAQRLS
Trigger: ACTCAGCCTTTGAGCTTGCCTAAGCAAGTCACATCAGCCTGCACTGACCAGCCACCAGCTACCTGTAACCCG
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000020208.5
CDS CCA 72 bp TCTGGCGGCGAAGACGAGCAGCTGCGTGTGTCTTCCTaGGCTTGGGAGTTGGAAACTTTGAGGTATACGGTA +
Preference number: 6 (lower is better)
Translates to: SGGEDEQLRVSS*AWELETLRYTV
Trigger: TACCGTATACCTCAAAGTTTCCAACTCCCAAGCCCAGGAAGACACACGCAGCTGCTCGTCTTCGCCGCCAGA
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000020208.5
CDS TCA 72 bp TCTCGAGGAGGAAGATTCCTTTTGTATGGGAGGAGCTaGCACTTCCGGGTTACAGGTAGCTGGTGGCTGGTC +
Preference number: 6 (lower is better)
Translates to: SRGGRFLLYGRS*HFRVTGSWWLV
Trigger: GACCAGCCACCAGCTACCTGTAACCCGGAAGTGTCAGCTCCTCCCATACAAAAGGAATCTTCCTCCTCGAGA
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000020208.5
CDS TCA 72 bp TCCTTCCCCTCCTGGGATGTTCCAGAACTGCAAGGCTaGTGTCTAGGATCAAGTTGCAGCTGGCCATCTGGA +
Preference number: 6 (lower is better)
Translates to: SFPSWDVPELQG*CLGSSCSWPSG
Trigger: TCCAGATGGCCAGCTGCAACTTGATCCTAGACATCAGCCTTGCAGTTCTGGAACATCCCAGGAGGGGAAGGA
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000020208.5
CDS TCA 72 bp GCATTCGCTCTTCCAGTTCCTTCAGGAGATCCCGGTTaGGCTCGTACAGCTGAGGCAGGTAGTACAGGATCT +
Preference number: 6 (lower is better)
Translates to: AFALPVPSGDPG*ARTAEAGSTGS
Trigger: AGATCCTGTACTACCTGCCTCAGCTGTACGAGCTCAACCGGGATCTCCTGAAGGAACTGGAAGAGCGAATGC
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000020208.5
CDS TCA 72 bp TGTAAGACTGACGACAAGGCACTTGAAGGAGACTTGTaGTTTCCGGGAGACCCAACCCTAGGCGACAGCTGG +
Preference number: 6 (lower is better)
Translates to: CKTDDKALEGDL*FPGDPTLGDSW
Trigger: CCAGCTGTCGCCTAGGGTTGGGTCTCCCGGAAATCACAAGTCTCCTTCAAGTGCCTTGTCGTCAGTCTTACA
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000020208.5
CDS GCA 72 bp CCGTGGAACACTAGCACTGCCAATGTCCGGTTTAGGTaGAATAGGAGGGGGAGGTGGCTTATTATTGGTCCC +
Preference number: 6 (lower is better)
Translates to: PWNTSTANVRFR*NRRGRWLIIGP
Trigger: GGGACCAATAATAAGCCACCTCCCCCTCCTATTGCACCTAAACCGGACATTGGCAGTGCTAGTGTTCCACGG
54% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000020208.5
CDS GCA 72 bp AGTATCTACATGCTTCTGGCGGCGAAGACGAGCAGCTaGGTGTGTCTTCCTGGGCTTGGGAGTTGGAAACTT +
Preference number: 6 (lower is better)
Translates to: SIYMLLAAKTSS*VCLPGLGSWKL
Trigger: AAGTTTCCAACTCCCAAGCCCAGGAAGACACACGCAGCTGCTCGTCTTCGCCGCCAGAAGCATGTAGATACT
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000020208.5
CDS CCA 72 bp TCTTCAGTGCTTTCACCAGGAGTATCTACATGCTTCTaGCGGCGAAGACGAGCAGCTGCGTGTGTCTTCCTG +
Preference number: 6 (lower is better)
Translates to: SSVLSPGVSTCF*RRRRAAACVFL
Trigger: CAGGAAGACACACGCAGCTGCTCGTCTTCGCCGCCAGAAGCATGTAGATACTCCTGGTGAAAGCACTGAAGA
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000020208.5
CDS CCA 72 bp CAGTGCCCTCTGGTTTGCTGGCCTCACCTCGTCCACTaGTCCCTGGTTATACAAAGCATTCTGACGAAGAAC +
Preference number: 6 (lower is better)
Translates to: QCPLVCWPHLVH*SLVIQSILTKN
Trigger: GTTCTTCGTCAGAATGCTTTGTATAACCAGGGACCAGTGGACGAGGTGAGGCCAGCAAACCAGAGGGCACTG
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000020208.5
CDS CCA 72 bp GAGGTAACTTCCACACTGGCTTCTCTGAAGTCGGGTTaGGCATATCAAAGGGTGATGCTGACGCGCCATGGT +
Preference number: 6 (lower is better)
Translates to: EVTSTLASLKSG*AYQRVMLTRHG
Trigger: ACCATGGCGCGTCAGCATCACCCTTTGATATGCCCAACCCGACTTCAGAGAAGCCAGTGTGGAAGTTACCTC
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000020208.5
CDS CCA 72 bp GGGTATCTCCTCATAATGGCGGACATTTTCATACTCTaGCCCGAAGTCGCCTGTACAGGACGTGTGCCTGGA +
Preference number: 6 (lower is better)
Translates to: GYLLIMADIFIL*PEVACTGRVPG
Trigger: TCCAGGCACACGTCCTGTACAGGCGACTTCGGGCCAGAGTATGAAAATGTCCGCCATTATGAGGAGATACCC
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000020208.5
CDS CAA 72 bp CGGCGAAGACGAGCAGCTGCGTGTGTCTTCCTGGGCTaGGGAGTTGGAAACTTTGAGGTATACGGTAGTAAG +
Preference number: 6 (lower is better)
Translates to: RRRRAAACVFLG*GVGNFEVYGSK
Trigger: CTTACTACCGTATACCTCAAAGTTTCCAACTCCCAAGCCCAGGAAGACACACGCAGCTGCTCGTCTTCGCCG
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000020208.5
CDS GCA 72 bp CAGCGGGGATTTTCTTCTGCTTCCTCCCTGACGGGATaGTATGTAAGACTGACGACAAGGCACTTGAAGGAG +
Preference number: 6 (lower is better)
Translates to: QRGFSSASSLTG*YVRLTTRHLKE
Trigger: CTCCTTCAAGTGCCTTGTCGTCAGTCTTACATAGCATCCCGTCAGGGAGGAAGCAGAAGAAAATCCCCGCTG
53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000020208.5
CDS CCA 72 bp GGCGAAGACGAGCAGCTGCGTGTGTCTTCCTGGGCTTaGGAGTTGGAAACTTTGAGGTATACGGTAGTAAGT +
Preference number: 6 (lower is better)
Translates to: GEDEQLRVSSWA*ELETLRYTVVS
Trigger: ACTTACTACCGTATACCTCAAAGTTTCCAACTCCCAAGCCCAGGAAGACACACGCAGCTGCTCGTCTTCGCC
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000020208.5
CDS CAA 72 bp CTGACGGGATGCTATGTAAGACTGACGACAAGGCACTaGAAGGAGACTTGTGATTTCCGGGAGACCCAACCC +
Preference number: 6 (lower is better)
Translates to: LTGCYVRLTTRH*KETCDFRETQP
Trigger: GGGTTGGGTCTCCCGGAAATCACAAGTCTCCTTCAAGTGCCTTGTCGTCAGTCTTACATAGCATCCCGTCAG
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000020208.5
CDS CAA 90 bp GGCGGCGAAGACGAGCAGCTGCGTGTGTCTTCCTGGGCTTGGGAGTaGGAAACTTTGAGGTATACGGTAGTAAGTGGATTTCTAAAGGAC +
Preference number: 6 (lower is better)
Translates to: GGEDEQLRVSSWAWE*ETLRYTVVSGFLKD
Trigger: GTCCTTTAGAAATCCACTTACTACCGTATACCTCAAAGTTTCCAACTCCCAAGCCCAGGAAGACACACGCAGCTGCTCGTCTTCGCCGCC
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000020208.5
CDS CAA 90 bp TGCTTCTGGCGGCGAAGACGAGCAGCTGCGTGTGTCTTCCTGGGCTaGGGAGTTGGAAACTTTGAGGTATACGGTAGTAAGTGGATTTCT +
Preference number: 6 (lower is better)
Translates to: CFWRRRRAAACVFLG*GVGNFEVYGSKWIS
Trigger: AGAAATCCACTTACTACCGTATACCTCAAAGTTTCCAACTCCCAAGCCCAGGAAGACACACGCAGCTGCTCGTCTTCGCCGCCAGAAGCA
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000020208.5
CDS CAA 90 bp TGCAAGGCTTGTTACACCGGTCCGCATCCACGGCAGACAGGGATTTaGCTCTTGGCTTGGTTAGGGAAACGGAAGGCTCGTTATTTAAGG +
Preference number: 6 (lower is better)
Translates to: CKACYTGPHPRQTGI*LLAWLGKRKARYLR
Trigger: CCTTAAATAACGAGCCTTCCGTTTCCCTAACCAAGCCAAGAGCAAAATCCCTGTCTGCCGTGGATGCGGACCGGTGTAACAAGCCTTGCA
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000020208.5
CDS CAA 90 bp GCTGGCCATCTGGAGCATTGTAGGGCTCTTCTACTTCATATAGACTaGCATCAGTGTCCTCCACACTGCTGGAGTTCTGCCATCCCAAGT +
Preference number: 6 (lower is better)
Translates to: AGHLEHCRALLLHID*HQCPPHCWSSAIPS
Trigger: ACTTGGGATGGCAGAACTCCAGCAGTGTGGAGGACACTGATGCAAGTCTATATGAAGTAGAAGAGCCCTACAATGCTCCAGATGGCCAGC
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000020208.5
CDS CAA 90 bp GAGTCCTCGTCAAGACTCCTGCTGGGGCAGAATGTGATTCTTTTCTaGGCATACTCTTCTATGGAGCTGGATATGGCCTCCAGCCAGTCA +
Preference number: 6 (lower is better)
Translates to: ESSSRLLLGQNVILF*AYSSMELDMASSQS
Trigger: TGACTGGCTGGAGGCCATATCCAGCTCCATAGAAGAGTATGCCAAGAAAAGAATCACATTCTGCCCCAGCAGGAGTCTTGACGAGGACTC
51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000020208.5
CDS TCA 72 bp AAGGCCTCTGGGCTCCCTGAAAAAGGTAGAATAGGATaGGGTAACTTCCACACTGGCTTCTCTGAAGTCGGG +
Preference number: 6 (lower is better)
Translates to: KASGLPEKGRIG*GNFHTGFSEVG
Trigger: CCCGACTTCAGAGAAGCCAGTGTGGAAGTTACCTCATCCTATTCTACCTTTTTCAGGGAGCCCAGAGGCCTT
51% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000020208.5
CDS TCA 72 bp TCTGCCATCCCAAGTCCGGAGTGTTCCTTCCAGCCATaGCAAAGGGCAAATTCTCATACTCGGGTATCTCCT +
Preference number: 6 (lower is better)
Translates to: SAIPSPECSFQP*QRANSHTRVSP
Trigger: AGGAGATACCCGAGTATGAGAATTTGCCCTTTGTCATGGCTGGAAGGAACACTCCGGACTTGGGATGGCAGA
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000020208.5
CDS TCA 72 bp TCCTTGACTAGAGTGACGGTGAAGCCTAATAAAGGCTaGCTTTCCAAAGCTGCCACGTCCTCGCTTGCAGCA +
Preference number: 6 (lower is better)
Translates to: SLTRVTVKPNKG*LSKAATSSLAA
Trigger: TGCTGCAAGCGAGGACGTGGCAGCTTTGGAAAGTCAGCCTTTATTAGGCTTCACCGTCACTCTAGTCAAGGA
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000020208.5
CDS GCA 72 bp GCTGACACTTCTTTGAGAGCAGCGGGGATTTTCTTCTaGTTCCTCCCTGACGGGATGCTATGTAAGACTGAC +
Preference number: 6 (lower is better)
Translates to: ADTSLRAAGIFF*FLPDGMLCKTD
Trigger: GTCAGTCTTACATAGCATCCCGTCAGGGAGGAAGCAGAAGAAAATCCCCGCTGCTCTCAAAGAAGTGTCAGC
51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000020208.5
CDS CCA 72 bp CTTCATATAGACTTGCATCAGTGTCCTCCACACTGCTaGAGTTCTGCCATCCCAAGTCCGGAGTGTTCCTTC +
Preference number: 6 (lower is better)
Translates to: LHIDLHQCPPHC*SSAIPSPECSF
Trigger: GAAGGAACACTCCGGACTTGGGATGGCAGAACTCCAGCAGTGTGGAGGACACTGATGCAAGTCTATATGAAG
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000020208.5
CDS CAA 72 bp GGTTTAGGTGCAATAGGAGGGGGAGGTGGCTTATTATaGGTCCCCACTAACTTTGGCTTGGGAGCCAATGGT +
Preference number: 6 (lower is better)
Translates to: GLGAIGGGGGLL*VPTNFGLGANG
Trigger: ACCATTGGCTCCCAAGCCAAAGTTAGTGGGGACCAATAATAAGCCACCTCCCCCTCCTATTGCACCTAAACC
51% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000020208.5
CDS CAA 90 bp TTACACCGGTCCGCATCCACGGCAGACAGGGATTTTGCTCTTGGCTaGGTTAGGGAAACGGAAGGCTCGTTATTTAAGGATAAAGTGACG +
Preference number: 6 (lower is better)
Translates to: LHRSASTADRDFALG*VRETEGSLFKDKVT
Trigger: CGTCACTTTATCCTTAAATAACGAGCCTTCCGTTTCCCTAACCAAGCCAAGAGCAAAATCCCTGTCTGCCGTGGATGCGGACCGGTGTAA
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000020208.5
CDS CAA 90 bp CTCCTGGGATGTTCCAGAACTGCAAGGCTGATGTCTAGGATCAAGTaGCAGCTGGCCATCTGGAGCATTGTAGGGCTCTTCTACTTCATA +
Preference number: 6 (lower is better)
Translates to: LLGCSRTARLMSRIK*QLAIWSIVGLFYFI
Trigger: TATGAAGTAGAAGAGCCCTACAATGCTCCAGATGGCCAGCTGCAACTTGATCCTAGACATCAGCCTTGCAGTTCTGGAACATCCCAGGAG
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000020208.5
CDS TCA 72 bp GCACTGTGTGTAAGTAGTCTCTTTGTCCACAGCAGGTaGCACGCCAGAACCACTGCTGTCAGAAGTCAAACT +
Preference number: 6 (lower is better)
Translates to: ALCVSSLFVHSR*HARTTAVRSQT
Trigger: AGTTTGACTTCTGACAGCAGTGGTTCTGGCGTGTCACCTGCTGTGGACAAAGAGACTACTTACACACAGTGC
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000020208.5
CDS GCA 72 bp AAGAAGAGCCATTGTTTGAGTTCCCTGGCTCTTCAGTaGTTTCACCAGGAGTATCTACATGCTTCTGGCGGC +
Preference number: 6 (lower is better)
Translates to: KKSHCLSSLALQ*FHQEYLHASGG
Trigger: GCCGCCAGAAGCATGTAGATACTCCTGGTGAAAGCACTGAAGAGCCAGGGAACTCAAACAATGGCTCTTCTT
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000020208.5
CDS CCA 72 bp CCGCATCCACGGCAGACAGGGATTTTGCTCTTGGCTTaGTTAGGGAAACGGAAGGCTCGTTATTTAAGGATA +
Preference number: 6 (lower is better)
Translates to: PHPRQTGILLLA*LGKRKARYLRI
Trigger: TATCCTTAAATAACGAGCCTTCCGTTTCCCTAACCAAGCCAAGAGCAAAATCCCTGTCTGCCGTGGATGCGG
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000020208.5
CDS CCA 72 bp TGTAGCCAAACCTTGCCAATCACTTTCAAGTCCTTTTaGCTCTCTAGCGAGCGGATGTCCTGCAGAGACATC +
Preference number: 6 (lower is better)
Translates to: CSQTLPITFKSF*LSSERMSCRDI
Trigger: GATGTCTCTGCAGGACATCCGCTCGCTAGAGAGCCAAAAGGACTTGAAAGTGATTGGCAAGGTTTGGCTACA
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000020208.5
CDS CAA 72 bp GACGAGCAGCTGCGTGTGTCTTCCTGGGCTTGGGAGTaGGAAACTTTGAGGTATACGGTAGTAAGTGGATTT +
Preference number: 6 (lower is better)
Translates to: DEQLRVSSWAWE*ETLRYTVVSGF
Trigger: AAATCCACTTACTACCGTATACCTCAAAGTTTCCAACTCCCAAGCCCAGGAAGACACACGCAGCTGCTCGTC
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000020208.5
CDS CAA 72 bp TCCGCATCCACGGCAGACAGGGATTTTGCTCTTGGCTaGGTTAGGGAAACGGAAGGCTCGTTATTTAAGGAT +
Preference number: 6 (lower is better)
Translates to: SASTADRDFALG*VRETEGSLFKD
Trigger: ATCCTTAAATAACGAGCCTTCCGTTTCCCTAACCAAGCCAAGAGCAAAATCCCTGTCTGCCGTGGATGCGGA
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000020208.5
CDS CAA 72 bp TTAAAAGAAGTTTTCTTCGGAGGGTCTTTGCAAGGCTaGTTACACCGGTCCGCATCCACGGCAGACAGGGAT +
Preference number: 6 (lower is better)
Translates to: LKEVFFGGSLQG*LHRSASTADRD
Trigger: ATCCCTGTCTGCCGTGGATGCGGACCGGTGTAACAAGCCTTGCAAAGACCCTCCGAAGAAAACTTCTTTTAA
50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000020208.5
CDS CAA 72 bp CTGGAGCATTGTAGGGCTCTTCTACTTCATATAGACTaGCATCAGTGTCCTCCACACTGCTGGAGTTCTGCC +
Preference number: 6 (lower is better)
Translates to: LEHCRALLLHID*HQCPPHCWSSA
Trigger: GGCAGAACTCCAGCAGTGTGGAGGACACTGATGCAAGTCTATATGAAGTAGAAGAGCCCTACAATGCTCCAG
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000020208.5
CDS CAA 72 bp GGTTTTCTGACCTTCATTCCAGCCAGCGAGAGCATGTaGTTCAGTTTGTACATCCCAGACTGCATGGGTGTG +
Preference number: 6 (lower is better)
Translates to: GFLTFIPASESM*FSLYIPDCMGV
Trigger: CACACCCATGCAGTCTGGGATGTACAAACTGAACAACATGCTCTCGCTGGCTGGAATGAAGGTCAGAAAACC
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000020208.5
CDS CAA 90 bp ACAACTGAGTTTGTCGGGACTTTTGGTTTTGGCGCAATTGCCGGTTaGGTCTTCTTCGTTAACCGTGGAACACTAGCACTGCCAATGTCC +
Preference number: 6 (lower is better)
Translates to: TTEFVGTFGFGAIAG*VFFVNRGTLALPMS
Trigger: GGACATTGGCAGTGCTAGTGTTCCACGGTTAACGAAGAAGACCAAACCGGCAATTGCGCCAAAACCAAAAGTCCCGACAAACTCAGTTGT
49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000020208.5
CDS CAA 90 bp GCCATCTTGACAAGTCTTGAGAGTCTGAGATTCATCCCTAGGAAGTaGTGGGTGGCAGTTGTGATGAGCGGGAACTTTTTCAAAGCCGGT +
Preference number: 6 (lower is better)
Translates to: AILTSLESLRFIPRK*WVAVVMSGNFFKAG
Trigger: ACCGGCTTTGAAAAAGTTCCCGCTCATCACAACTGCCACCCACAACTTCCTAGGGATGAATCTCAGACTCTCAAGACTTGTCAAGATGGC
49% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000020208.5
CDS CAA 90 bp TCGCCTTTACTGGACTCGGAGCTGACATCATCTTCATCAGAACTATaGATGACTTCCTCATCAGAAGGCAGGTCACTGAGGCCAAGATGG +
Preference number: 6 (lower is better)
Translates to: SPLLDSELTSSSSEL*MTSSSEGRSLRPRW
Trigger: CCATCTTGGCCTCAGTGACCTGCCTTCTGATGAGGAAGTCATCAATAGTTCTGATGAAGATGATGTCAGCTCCGAGTCCAGTAAAGGCGA
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000020208.5
CDS CAA 90 bp ACACTCTTGCCAGTTGCCCTTTCAGGTAATCTAAGCCATACTTGTTaGATGAGCAAGCTTGGCACACAATCTTCCCACAGGCCCTGCAGT +
Preference number: 6 (lower is better)
Translates to: TLLPVALSGNLSHTC*MSKLGTQSSHRPCS
Trigger: ACTGCAGGGCCTGTGGGAAGATTGTGTGCCAAGCTTGCTCATCAAACAAGTATGGCTTAGATTACCTGAAAGGGCAACTGGCAAGAGTGT
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000020208.5
CDS TCA 72 bp CCAGGTTGGCACATCGAGGGCTCATCTCGAATTCTCTaGCAACTGCAGCAAATCCTGGATTTTTCTTGCACT +
Preference number: 6 (lower is better)
Translates to: PGWHIEGSSRIL*QLQQILDFSCT
Trigger: AGTGCAAGAAAAATCCAGGATTTGCTGCAGTTGTCAGAGAATTCGAGATGAGCCCTCGATGTGCCAACCTGG
49% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000020208.5
CDS CAA 72 bp TTTGTCGGGACTTTTGGTTTTGGCGCAATTGCCGGTTaGGTCTTCTTCGTTAACCGTGGAACACTAGCACTG +
Preference number: 6 (lower is better)
Translates to: FVGTFGFGAIAG*VFFVNRGTLAL
Trigger: CAGTGCTAGTGTTCCACGGTTAACGAAGAAGACCAAACCGGCAATTGCGCCAAAACCAAAAGTCCCGACAAA
49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000020208.5
CDS CAA 72 bp CAACTGAGTTTGTCGGGACTTTTGGTTTTGGCGCAATaGCCGGTTTGGTCTTCTTCGTTAACCGTGGAACAC +
Preference number: 6 (lower is better)
Translates to: QLSLSGLLVLAQ*PVWSSSLTVEH
Trigger: GTGTTCCACGGTTAACGAAGAAGACCAAACCGGCAATTGCGCCAAAACCAAAAGTCCCGACAAACTCAGTTG
49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000020208.5
CDS CAA 72 bp AACAATAATCCTCCAGGAGGCAAGAAGAGCCATTGTTaGAGTTCCCTGGCTCTTCAGTGCTTTCACCAGGAG +
Preference number: 6 (lower is better)
Translates to: NNNPPGGKKSHC*SSLALQCFHQE
Trigger: CTCCTGGTGAAAGCACTGAAGAGCCAGGGAACTCAAACAATGGCTCTTCTTGCCTCCTGGAGGATTATTGTT
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000020208.5
CDS CAA 72 bp TCAAGACTCCTGCTGGGGCAGAATGTGATTCTTTTCTaGGCATACTCTTCTATGGAGCTGGATATGGCCTCC +
Preference number: 6 (lower is better)
Translates to: SRLLLGQNVILF*AYSSMELDMAS
Trigger: GGAGGCCATATCCAGCTCCATAGAAGAGTATGCCAAGAAAAGAATCACATTCTGCCCCAGCAGGAGTCTTGA
49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000020208.5
CDS TCA 72 bp TTAGGGAAACGGAAGGCTCGTTATTTAAGGATAAAGTaGCGCGTTTCAAGGCCTCTGGGCTCCCTGAAAAAG +
Preference number: 6 (lower is better)
Translates to: LGKRKARYLRIK*RVSRPLGSLKK
Trigger: CTTTTTCAGGGAGCCCAGAGGCCTTGAAACGCGTCACTTTATCCTTAAATAACGAGCCTTCCGTTTCCCTAA
47% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000020208.5
CDS TCA 72 bp CTCCAGCCAGTCATCTCTTTCTGCGGCAGAACTAGCTaGGAGGATGAAAGAACGCTCTACACTTTCAATCTT +
Preference number: 6 (lower is better)
Translates to: LQPVISFCGRTS*EDERTLYTFNL
Trigger: AAGATTGAAAGTGTAGAGCGTTCTTTCATCCTCTCAGCTAGTTCTGCCGCAGAAAGAGATGACTGGCTGGAG
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000020208.5
CDS GCA 72 bp GAAGTCAAACTAGAATCTGTATCTAAAGAAGGCGTTTaGTGCTGCACAGCTTTCTGTGAGCCGACTGAGTCC +
Preference number: 6 (lower is better)
Translates to: EVKLESVSKEGV*CCTAFCEPTES
Trigger: GGACTCAGTCGGCTCACAGAAAGCTGTGCAGCAGCAAACGCCTTCTTTAGATACAGATTCTAGTTTGACTTC
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000020208.5
CDS GCA 72 bp CTGGATGCATGGGCTACAGCACCCCGGAAGTCAATATaGAAAAGCTTTAACACATCCACAAACACTTTCTCG +
Preference number: 6 (lower is better)
Translates to: LDAWATAPRKSI*KSFNTSTNTFS
Trigger: CGAGAAAGTGTTTGTGGATGTGTTAAAGCTTTTGCATATTGACTTCCGGGGTGCTGTAGCCCATGCATCCAG
47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000020208.5
CDS CAA 72 bp CCAGTTGCCCTTTCAGGTAATCTAAGCCATACTTGTTaGATGAGCAAGCTTGGCACACAATCTTCCCACAGG +
Preference number: 6 (lower is better)
Translates to: PVALSGNLSHTC*MSKLGTQSSHR
Trigger: CCTGTGGGAAGATTGTGTGCCAAGCTTGCTCATCAAACAAGTATGGCTTAGATTACCTGAAAGGGCAACTGG
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000020208.5
CDS CAA 72 bp ATTTCTGTAGCTCTTGGAAGCAGTGCTCGCACACTCTaGCCAGTTGCCCTTTCAGGTAATCTAAGCCATACT +
Preference number: 6 (lower is better)
Translates to: ISVALGSSARTL*PVALSGNLSHT
Trigger: AGTATGGCTTAGATTACCTGAAAGGGCAACTGGCAAGAGTGTGCGAGCACTGCTTCCAAGAGCTACAGAAAT
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000020208.5
CDS CAA 90 bp GGTGATCTAATTTCTGTAGCTCTTGGAAGCAGTGCTCGCACACTCTaGCCAGTTGCCCTTTCAGGTAATCTAAGCCATACTTGTTTGATG +
Preference number: 6 (lower is better)
Translates to: GDLISVALGSSARTL*PVALSGNLSHTCLM
Trigger: CATCAAACAAGTATGGCTTAGATTACCTGAAAGGGCAACTGGCAAGAGTGTGCGAGCACTGCTTCCAAGAGCTACAGAAATTAGATCACC
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000020208.5
CDS CCA 72 bp AGTCTTGAGAGTCTGAGATTCATCCCTAGGAAGTTGTaGGTGGCAGTTGTGATGAGCGGGAACTTTTTCAAA +
Preference number: 6 (lower is better)
Translates to: SLESLRFIPRKL*VAVVMSGNFFK
Trigger: TTTGAAAAAGTTCCCGCTCATCACAACTGCCACCCACAACTTCCTAGGGATGAATCTCAGACTCTCAAGACT
46% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000020208.5
CDS CAA 72 bp TGTCTTGAACAACTGAGTTTGTCGGGACTTTTGGTTTaGGCGCAATTGCCGGTTTGGTCTTCTTCGTTAACC +
Preference number: 6 (lower is better)
Translates to: CLEQLSLSGLLV*AQLPVWSSSLT
Trigger: GGTTAACGAAGAAGACCAAACCGGCAATTGCGCCAAAACCAAAAGTCCCGACAAACTCAGTTGTTCAAGACA
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000020208.5
CDS TCA 72 bp TTTCATGGTGTCCACTTAAGCTGTACTGAATCTGCATaGGCTTCTGAAAGTTGTCCCCTTGCTTCATGGTGT +
Preference number: 6 (lower is better)
Translates to: FHGVHLSCTESA*ASESCPLASWC
Trigger: ACACCATGAAGCAAGGGGACAACTTTCAGAAGCTCATGCAGATTCAGTACAGCTTAAGTGGACACCATGAAA
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000020208.5
CDS CAA 72 bp GGTGAAGGTAGTTTCTGTGCAGACCTTTCTCGACATTaGTCTCCTTACCTGAAGAGCTCTTTTCTACAAGCT +
Preference number: 6 (lower is better)
Translates to: GEGSFCADLSRH*SPYLKSSFLQA
Trigger: AGCTTGTAGAAAAGAGCTCTTCAGGTAAGGAGACAAATGTCGAGAAAGGTCTGCACAGAAACTACCTTCACC
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000020208.5
CDS CAA 72 bp TGGCCCCTTCTTTACAAAGATATCAGCAATTCTTTGTaGTTCTGTCCAGGTGAGCATTCGCTCTTCCAGTTC +
Preference number: 6 (lower is better)
Translates to: WPLLYKDISNSL*FCPGEHSLFQF
Trigger: GAACTGGAAGAGCGAATGCTCACCTGGACAGAACAACAAAGAATTGCTGATATCTTTGTAAAGAAGGGGCCA
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000020208.5
CDS CAA 90 bp TGTTTTTCAAACAATAATCCTCCAGGAGGCAAGAAGAGCCATTGTTaGAGTTCCCTGGCTCTTCAGTGCTTTCACCAGGAGTATCTACAT +
Preference number: 6 (lower is better)
Translates to: CFSNNNPPGGKKSHC*SSLALQCFHQEYLH
Trigger: ATGTAGATACTCCTGGTGAAAGCACTGAAGAGCCAGGGAACTCAAACAATGGCTCTTCTTGCCTCCTGGAGGATTATTGTTTGAAAAACA
43% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000020208.5
CDS GCA 72 bp AACTTTTTCAAAGCCGGTCAGGGAAGAAGACACATCTaGAAATTCAATTCTGATCTGCCTGGTGCAACTATG +
Preference number: 6 (lower is better)
Translates to: NFFKAGQGRRHI*KFNSDLPGATM
Trigger: CATAGTTGCACCAGGCAGATCAGAATTGAATTTGCAGATGTGTCTTCTTCCCTGACCGGCTTTGAAAAAGTT
43% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000020208.5
CDS TCA 72 bp AAAGTAGGTTTCTTTGAGGGTGGATGCTTAATGTCTTaGACAACTGAGTTTGTCGGGACTTTTGGTTTTGGC +
Preference number: 6 (lower is better)
Translates to: KVGFFEGGCLMS*TTEFVGTFGFG
Trigger: GCCAAAACCAAAAGTCCCGACAAACTCAGTTGTTCAAGACATTAAGCATCCACCCTCAAAGAAACCTACTTT
42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000020208.5
CDS CAA 72 bp AATTCTCTGACAACTGCAGCAAATCCTGGATTTTTCTaGCACTGCTCATCCAGCAAAGCTACGTTCTTATCA +
Preference number: 6 (lower is better)
Translates to: NSLTTAANPGFF*HCSSSKATFLS
Trigger: TGATAAGAACGTAGCTTTGCTGGATGAGCAGTGCAAGAAAAATCCAGGATTTGCTGCAGTTGTCAGAGAATT
42% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000020208.5
CDS CAA 90 bp CTCATCTCGAATTCTCTGACAACTGCAGCAAATCCTGGATTTTTCTaGCACTGCTCATCCAGCAAAGCTACGTTCTTATCAAATTCTTTG +
Preference number: 6 (lower is better)
Translates to: LISNSLTTAANPGFF*HCSSSKATFLSNSL
Trigger: CAAAGAATTTGATAAGAACGTAGCTTTGCTGGATGAGCAGTGCAAGAAAAATCCAGGATTTGCTGCAGTTGTCAGAGAATTCGAGATGAG
41% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000020208.5