RADAR | Search for sensor designs | Human genes | Mouse genes | Code

Pregenerated sensors for FGD4 (Mus musculus)

Ensembl gene IDs: ENSMUSG00000022788

Ensembl transcript IDs: ENSMUST00000069284.14, ENSMUST00000159542.8, ENSMUST00000161188.9, ENSMUST00000161861.8, ENSMUST00000162671.8

Found 206 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).

Type Sensor Details
3UTR CCA 90 bp CACAAGCACAACCTAATAGACAGCCATAGTTCATCTGAGAGTCCATaGGATAAAAAGGGAGAATTCTGCAGTTTCTTTAGTGCTTCCCAT +
Preference number: 1 (lower is better)
Translates to: HKHNLIDSHSSSESP*DKKGEFCSFFSASH
Trigger: ATGGGAAGCACTAAAGAAACTGCAGAATTCTCCCTTTTTATCCCATGGACTCTCAGATGAACTATGGCTGTCTATTAGGTTGTGCTTGTG
42% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000161861.8
3UTR CCA 90 bp ATGTATAGTTATTGTTTAATTTTATCAATAGGTACCCTTCACACCTaGTTTCTTTCCTCCCACTCAAACACAGCATCAATGCTGACAACT +
Preference number: 1 (lower is better)
Translates to: MYSYCLILSIGTLHT*FLSSHSNTASMLTT
Trigger: AGTTGTCAGCATTGATGCTGTGTTTGAGTGGGAGGAAAGAAACCAGGTGTGAAGGGTACCTATTGATAAAATTAAACAATAACTATACAT
37% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000161861.8
3UTR CCA 90 bp AAAATGAGACGTTTCTTGTGCAACATGAGGTGTATAAATGTATGGTaGTCTCAATTTCTGATAAATTGTACTCTACATCTCAAGTGTAGC +
Preference number: 1 (lower is better)
Translates to: KMRRFLCNMRCINVW*SQFLINCTLHLKCS
Trigger: GCTACACTTGAGATGTAGAGTACAATTTATCAGAAATTGAGACCACCATACATTTATACACCTCATGTTGCACAAGAAACGTCTCATTTT
36% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000161861.8
3UTR CCA 90 bp CCTTCTACTCTTAAAACAACAGAGATAAATAAGACCTGTGCTTTCTaGGAATTGATTTACTCTTATTCATGCTCATTTGCCATGACAACA +
Preference number: 1 (lower is better)
Translates to: PSTLKTTEINKTCAF*ELIYSYSCSFAMTT
Trigger: TGTTGTCATGGCAAATGAGCATGAATAAGAGTAAATCAATTCCCAGAAAGCACAGGTCTTATTTATCTCTGTTGTTTTAAGAGTAGAAGG
36% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000161861.8
3UTR CAA 90 bp AGCACCTTCACCAAAACTTCCTGGCCCCACCTCTGTTGCCCTTGCTaGCCTGGCCTTTATGTGGTCTCCGGAGACCTGTCTGAACTGTTT +
Preference number: 2 (lower is better)
Translates to: STFTKTSWPHLCCPC*PGLYVVSGDLSELF
Trigger: AAACAGTTCAGACAGGTCTCCGGAGACCACATAAAGGCCAGGCAAGCAAGGGCAACAGAGGTGGGGCCAGGAAGTTTTGGTGAAGGTGCT
54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000161861.8
3UTR-3UTR TCA 90 bp CTCCATTCATTCCTTTCATGTGCTAAGGTAGGTGCTCTCTCTATACCTGCAACACTGCACTCGCTGCTCTaGCTTGCCTGGATAGAGCAC +
Preference number: 2 (lower is better)
Translates to: LHSFLSCAKVGALSIPATLHSLL*LAWIEH
Trigger: GTGCTCTATCCAGGCAAGTCAGAGCAGCGAGTGCAG...TGTTGCAGGTATAGAGAGAGCACCTACCTTAGCACATGAAAGGAATGAATGGAG
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000161861.8
3UTR CAA 90 bp GAGCTCCGCTTTGTAGCTGACAGAAGGAAAGCTCACCCAGCCACCTaGTGTTTATTAGATGTTGTCCTCATTTACCCGTCCATAACAGTC +
Preference number: 2 (lower is better)
Translates to: ELRFVADRRKAHPAT*CLLDVVLIYPSITV
Trigger: GACTGTTATGGACGGGTAAATGAGGACAACATCTAATAAACACAAGGTGGCTGGGTGAGCTTTCCTTCTGTCAGCTACAAAGCGGAGCTC
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000161861.8
3UTR CAA 90 bp ACTGTGCAAATGTGGAGAGATCTGAGGCTATGTCAGGTGACTTCCTaGGTGCCTCTCTACCTCATCATTGAGGCAAGGTTACTTACTGTT +
Preference number: 2 (lower is better)
Translates to: TVQMWRDLRLCQVTS*VPLYLIIEARLLTV
Trigger: AACAGTAAGTAACCTTGCCTCAATGATGAGGTAGAGAGGCACCAAGGAAGTCACCTGACATAGCCTCAGATCTCTCCACATTTGCACAGT
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000161861.8
3UTR-3UTR CCA 90 bp CTCCATTCATTCCTTTCATGTGCTAAGGTAGGTGCTCTCTCTATACCTGCAACAGGTACCCTTCACACCTaGTTTCTTTCCTCCCACTCA +
Preference number: 2 (lower is better)
Translates to: LHSFLSCAKVGALSIPATGTLHT*FLSSHS
Trigger: TGAGTGGGAGGAAAGAAACCAGGTGTGAAGGGTACC...TGTTGCAGGTATAGAGAGAGCACCTACCTTAGCACATGAAAGGAATGAATGGAG
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000161861.8
3UTR-3UTR TCA 90 bp CTCCATTCATTCCTTTCATGTGCTAAGGTAGGTGCTCTCTCTATACCTGCAACAGAGCTGGGGATGTCTTaGGCTATGTGTATTACTGGA +
Preference number: 2 (lower is better)
Translates to: LHSFLSCAKVGALSIPATELGMS*AMCITG
Trigger: TCCAGTAATACACATAGCTCAAGACATCCCCAGCTC...TGTTGCAGGTATAGAGAGAGCACCTACCTTAGCACATGAAAGGAATGAATGGAG
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000161861.8
3UTR-3UTR TCA 90 bp AAGCATAAATTTCCTTTACTAATAACTCTCTTCTCCCAGATAAGCTGGCACACGGCTCCGCTTTGTAGCTaGCAGAAGGAAAGCTCACCC +
Preference number: 2 (lower is better)
Translates to: KHKFPLLITLFSQISWHTAPLCS*QKESSP
Trigger: GGGTGAGCTTTCCTTCTGTCAGCTACAAAGCGGAGC...CGTGTGCCAGCTTATCTGGGAGAAGAGAGTTATTAGTAAAGGAAATTTATGCTT
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000161861.8
3UTR-3UTR TCA 90 bp CTCCATTCATTCCTTTCATGTGCTAAGGTAGGTGCTCTCTCTATACCTGCAACAGCAATTAAGAGGTCCTaGGTTCAATTCCCAGCAACC +
Preference number: 2 (lower is better)
Translates to: LHSFLSCAKVGALSIPATAIKRS*VQFPAT
Trigger: GGTTGCTGGGAATTGAACTCAGGACCTCTTAATTGC...TGTTGCAGGTATAGAGAGAGCACCTACCTTAGCACATGAAAGGAATGAATGGAG
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000161861.8
3UTR-3UTR GCA 90 bp AAAGTGAGTTCCAGGACAGCTATACAGAGAAACCTTGTCTCGAAAAACCAAAAAGGGGAAAGTGGTTTGTaGTTGGCTCAGTGTGGGGAG +
Preference number: 2 (lower is better)
Translates to: KVSSRTAIQRNLVSKNQKGESGL*LAQCGE
Trigger: CTCCCCACACTGAGCCAAGCACAAACCACTTTCCCC...TTTTTGGTTTTTCGAGACAAGGTTTCTCTGTATAGCTGTCCTGGAACTCACTTT
46% GC, longest homopolymer 5 nt, total homopolymer stretches 18 nt.
Matches the following 1 transcripts:
ENSMUST00000161861.8
3UTR-3UTR CCA 90 bp CTCCATTCATTCCTTTCATGTGCTAAGGTAGGTGCTCTCTCTATACCTGCAACAGAGAAGATCCTCTTCTaGCACTCACACTCCTTACTG +
Preference number: 2 (lower is better)
Translates to: LHSFLSCAKVGALSIPATEKILF*HSHSLL
Trigger: CAGTAAGGAGTGTGAGTGCCAGAAGAGGATCTTCTC...TGTTGCAGGTATAGAGAGAGCACCTACCTTAGCACATGAAAGGAATGAATGGAG
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000161861.8
3UTR-3UTR CCA 90 bp CTCCATTCATTCCTTTCATGTGCTAAGGTAGGTGCTCTCTCTATACCTGCAACACACAACCATCTGCAATaGGATCTGATGCCTTCTTCG +
Preference number: 2 (lower is better)
Translates to: LHSFLSCAKVGALSIPATHNHLQ*DLMPSS
Trigger: CGAAGAAGGCATCAGATCCCATTGCAGATGGTTGTG...TGTTGCAGGTATAGAGAGAGCACCTACCTTAGCACATGAAAGGAATGAATGGAG
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000161861.8
3UTR CAA 90 bp AAGCCATGGAACGATGCCTTCCTTCTTTCCCCTGTGCTCAGCAATTaGGACTATCATATCACTTCTCAGAAGTTGATTCTCTATATGCTG +
Preference number: 2 (lower is better)
Translates to: KPWNDAFLLSPVLSN*DYHITSQKLILYML
Trigger: CAGCATATAGAGAATCAACTTCTGAGAAGTGATATGATAGTCCAAATTGCTGAGCACAGGGGAAAGAAGGAAGGCATCGTTCCATGGCTT
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000161861.8
3UTR-3UTR TCA 90 bp CTCCATTCATTCCTTTCATGTGCTAAGGTAGGTGCTCTCTCTATACCTGCAACACATGCTCATTTGCCATaGCAACACACTGACAGATAT +
Preference number: 2 (lower is better)
Translates to: LHSFLSCAKVGALSIPATHAHLP*QHTDRY
Trigger: ATATCTGTCAGTGTGTTGTCATGGCAAATGAGCATG...TGTTGCAGGTATAGAGAGAGCACCTACCTTAGCACATGAAAGGAATGAATGGAG
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000161861.8
3UTR-3UTR GCA 90 bp AAAGTGAGTTCCAGGACAGCTATACAGAGAAACCTTGTCTCGAAAAACCAAAAAGAAGCCATGGAACGATaGCTTCCTTCTTTCCCCTGT +
Preference number: 2 (lower is better)
Translates to: KVSSRTAIQRNLVSKNQKEAMER*LPSFPC
Trigger: ACAGGGGAAAGAAGGAAGGCATCGTTCCATGGCTTC...TTTTTGGTTTTTCGAGACAAGGTTTCTCTGTATAGCTGTCCTGGAACTCACTTT
43% GC, longest homopolymer 5 nt, total homopolymer stretches 14 nt.
Matches the following 1 transcripts:
ENSMUST00000161861.8
3UTR-3UTR CCA 90 bp CTCCATTCATTCCTTTCATGTGCTAAGGTAGGTGCTCTCTCTATACCTGCAACAAGCTATGTGTATTACTaGAAACTCCACACTAGCAGC +
Preference number: 2 (lower is better)
Translates to: LHSFLSCAKVGALSIPATSYVYY*KLHTSS
Trigger: GCTGCTAGTGTGGAGTTTCCAGTAATACACATAGCT...TGTTGCAGGTATAGAGAGAGCACCTACCTTAGCACATGAAAGGAATGAATGGAG
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000161861.8
3UTR-3UTR TCA 90 bp CTCCATTCATTCCTTTCATGTGCTAAGGTAGGTGCTCTCTCTATACCTGCAACATCACTTCTCAGAAGTTaGTTCTCTATATGCTGTAGC +
Preference number: 2 (lower is better)
Translates to: LHSFLSCAKVGALSIPATSLLRS*FSICCS
Trigger: GCTACAGCATATAGAGAATCAACTTCTGAGAAGTGA...TGTTGCAGGTATAGAGAGAGCACCTACCTTAGCACATGAAAGGAATGAATGGAG
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000161861.8
3UTR-3UTR GCA 90 bp CTCCATTCATTCCTTTCATGTGCTAAGGTAGGTGCTCTCTCTATACCTGCAACACCTAATTGGTTCCCTTaGTCCTTTGGAGTAGAAAAA +
Preference number: 2 (lower is better)
Translates to: LHSFLSCAKVGALSIPATPNWFP*SFGVEK
Trigger: TTTTTCTACTCCAAAGGAGCAAGGGAACCAATTAGG...TGTTGCAGGTATAGAGAGAGCACCTACCTTAGCACATGAAAGGAATGAATGGAG
42% GC, longest homopolymer 5 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000161861.8
3UTR-3UTR GCA 90 bp CTCCATTCATTCCTTTCATGTGCTAAGGTAGGTGCTCTCTCTATACCTGCAACAACTGTTTCTCATCCTTaGATAGAATTCTCCTTAGCC +
Preference number: 2 (lower is better)
Translates to: LHSFLSCAKVGALSIPATTVSHP*IEFSLA
Trigger: GGCTAAGGAGAATTCTATGCAAGGATGAGAAACAGT...TGTTGCAGGTATAGAGAGAGCACCTACCTTAGCACATGAAAGGAATGAATGGAG
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000161861.8
3UTR-3UTR CCA 90 bp AAGCATAAATTTCCTTTACTAATAACTCTCTTCTCCCAGATAAGCTGGCACACGACAAGGAAGGAGAGCTaGGGATGTCTTGAGCTATGT +
Preference number: 2 (lower is better)
Translates to: KHKFPLLITLFSQISWHTTRKES*GCLELC
Trigger: ACATAGCTCAAGACATCCCCAGCTCTCCTTCCTTGT...CGTGTGCCAGCTTATCTGGGAGAAGAGAGTTATTAGTAAAGGAAATTTATGCTT
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000161861.8
3UTR-3UTR TCA 90 bp CTCCATTCATTCCTTTCATGTGCTAAGGTAGGTGCTCTCTCTATACCTGCAACACATGTGCTTATCATGTaGTGTAGGAAAGCTAAGTTA +
Preference number: 2 (lower is better)
Translates to: LHSFLSCAKVGALSIPATHVLIM*CRKAKL
Trigger: TAACTTAGCTTTCCTACATCACATGATAAGCACATG...TGTTGCAGGTATAGAGAGAGCACCTACCTTAGCACATGAAAGGAATGAATGGAG
41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000161861.8
3UTR-3UTR GCA 90 bp CTCCATTCATTCCTTTCATGTGCTAAGGTAGGTGCTCTCTCTATACCTGCAACAGCAGAGCAAACAAACTaGTTCATTATACATAGCCTT +
Preference number: 2 (lower is better)
Translates to: LHSFLSCAKVGALSIPATAEQTN*FIIHSL
Trigger: AAGGCTATGTATAATGAAGCAGTTTGTTTGCTCTGC...TGTTGCAGGTATAGAGAGAGCACCTACCTTAGCACATGAAAGGAATGAATGGAG
41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000161861.8
3UTR-3UTR GCA 90 bp CTCCATTCATTCCTTTCATGTGCTAAGGTAGGTGCTCTCTCTATACCTGCAACAAACCATATTTCTCAATaGAAAGTGCTAAGAGACAAG +
Preference number: 2 (lower is better)
Translates to: LHSFLSCAKVGALSIPATNHISQ*KVLRDK
Trigger: CTTGTCTCTTAGCACTTTGCATTGAGAAATATGGTT...TGTTGCAGGTATAGAGAGAGCACCTACCTTAGCACATGAAAGGAATGAATGGAG
40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000161861.8
3UTR CAA 90 bp TTTCTTCTTCACAATGTAATCTCCATGAAGCTAGGAGCTATTTTGTaGACCATATTCTTTCTCTTCATGGGGCAGCACAATACTTTGCAT +
Preference number: 2 (lower is better)
Translates to: FLLHNVISMKLGAIL*TIFFLFMGQHNTLH
Trigger: ATGCAAAGTATTGTGCTGCCCCATGAAGAGAAAGAATATGGTCAACAAAATAGCTCCTAGCTTCATGGAGATTACATTGTGAAGAAGAAA
38% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000161188.9
3UTR CAA 90 bp TATTTTCTTCTTCACAATGTAATCTCCATGAAGCTAGGAGCTATTTaGTTGACCATATTCTTTCTCTTCATGGGGCAGCACAATACTTTG +
Preference number: 2 (lower is better)
Translates to: YFLLHNVISMKLGAI*LTIFFLFMGQHNTL
Trigger: CAAAGTATTGTGCTGCCCCATGAAGAGAAAGAATATGGTCAACAAAATAGCTCCTAGCTTCATGGAGATTACATTGTGAAGAAGAAAATA
37% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000161188.9
3UTR-3UTR GCA 90 bp AAAGTGAGTTCCAGGACAGCTATACAGAGAAACCTTGTCTCGAAAAACCAAAAAATGAGACGTTTCTTGTaGAACATGAGGTGTATAAAT +
Preference number: 2 (lower is better)
Translates to: KVSSRTAIQRNLVSKNQKMRRFL*NMRCIN
Trigger: ATTTATACACCTCATGTTGCACAAGAAACGTCTCAT...TTTTTGGTTTTTCGAGACAAGGTTTCTCTGTATAGCTGTCCTGGAACTCACTTT
37% GC, longest homopolymer 6 nt, total homopolymer stretches 11 nt.
Matches the following 1 transcripts:
ENSMUST00000161861.8
3UTR-3UTR CCA 90 bp AAAGTGAGTTCCAGGACAGCTATACAGAGAAACCTTGTCTCGAAAAACCAAAAAACTTCAACAGAAGAATaGCTCTGCATACTGATTTTA +
Preference number: 2 (lower is better)
Translates to: KVSSRTAIQRNLVSKNQKTSTEE*LCILIL
Trigger: TAAAATCAGTATGCAGAGCCATTCTTCTGTTGAAGT...TTTTTGGTTTTTCGAGACAAGGTTTCTCTGTATAGCTGTCCTGGAACTCACTTT
37% GC, longest homopolymer 6 nt, total homopolymer stretches 15 nt.
Matches the following 1 transcripts:
ENSMUST00000161861.8
3UTR GCA 72 bp TTCACCAAAACTTCCTGGCCCCACCTCTGTTGCCCTTaGTTGCCTGGCCTTTATGTGGTCTCCGGAGACCTG +
Preference number: 3 (lower is better)
Translates to: FTKTSWPHLCCP*LPGLYVVSGDL
Trigger: CAGGTCTCCGGAGACCACATAAAGGCCAGGCAAGCAAGGGCAACAGAGGTGGGGCCAGGAAGTTTTGGTGAA
57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000161861.8
3UTR CCA 72 bp CCCAGCAACCGCATGGTGGTTCACAACCATCTGCAATaGGATCTGATGCCTTCTTCGGGTGTGTCTAAAGAT +
Preference number: 3 (lower is better)
Translates to: PSNRMVVHNHLQ*DLMPSSGVSKD
Trigger: ATCTTTAGACACACCCGAAGAAGGCATCAGATCCCATTGCAGATGGTTGTGAACCACCATGCGGTTGCTGGG
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000161861.8
3UTR TCA 72 bp AGGCAAGGTTACTTACTGTTCCTGCACTCGCTGCTCTaGCTTGCCTGGATAGAGCACCTTCACCAAAACTTC +
Preference number: 3 (lower is better)
Translates to: RQGYLLFLHSLL*LAWIEHLHQNF
Trigger: GAAGTTTTGGTGAAGGTGCTCTATCCAGGCAAGTCAGAGCAGCGAGTGCAGGAACAGTAAGTAACCTTGCCT
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000161861.8
3UTR CCA 72 bp GAGAGATGGGGAAAGTGGTTTGTGCTTGGCTCAGTGTaGGGAGAAGTAAAGGTGAGAACCAGAGAAGATCCT +
Preference number: 3 (lower is better)
Translates to: ERWGKWFVLGSV*GEVKVRTREDP
Trigger: AGGATCTTCTCTGGTTCTCACCTTTACTTCTCCCCACACTGAGCCAAGCACAAACCACTTTCCCCATCTCTC
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000161861.8
3UTR-3UTR CAA 90 bp GAAAGCTCACCCAGCCACCTTGTGTTTATTAGATGTTGTCCTCATTTACCCGTCAGAGCTGGGGATGTCTaGAGCTATGTGTATTACTGG +
Preference number: 3 (lower is better)
Translates to: ESSPSHLVFIRCCPHLPVRAGDV*SYVYYW
Trigger: CCAGTAATACACATAGCTCAAGACATCCCCAGCTCT...GACGGGTAAATGAGGACAACATCTAATAAACACAAGGTGGCTGGGTGAGCTTTC
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000161861.8
3UTR TCA 72 bp GTGCTAAGAGACAAGGAAGGAGAGCTGGGGATGTCTTaGGCTATGTGTATTACTGGAAACTCCACACTAGCA +
Preference number: 3 (lower is better)
Translates to: VLRDKEGELGMS*AMCITGNSTLA
Trigger: TGCTAGTGTGGAGTTTCCAGTAATACACATAGCTCAAGACATCCCCAGCTCTCCTTCCTTGTCTCTTAGCAC
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000161861.8
3UTR TCA 72 bp CTTGCCTGGCCTTTATGTGGTCTCCGGAGACCTGTCTaGACTGTTTCTCATCCTTGCATAGAATTCTCCTTA +
Preference number: 3 (lower is better)
Translates to: LAWPLCGLRRPV*TVSHPCIEFSL
Trigger: TAAGGAGAATTCTATGCAAGGATGAGAAACAGTTCAGACAGGTCTCCGGAGACCACATAAAGGCCAGGCAAG
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000161861.8
3UTR-3UTR CAA 90 bp AAAGTGAGTTCCAGGACAGCTATACAGAGAAACCTTGTCTCGAAAAACCAAAAACCACCTCTGTTGCCCTaGCTTGCCTGGCCTTTATGT +
Preference number: 3 (lower is better)
Translates to: KVSSRTAIQRNLVSKNQKPPLLP*LAWPLC
Trigger: ACATAAAGGCCAGGCAAGCAAGGGCAACAGAGGTGG...TTTTTGGTTTTTCGAGACAAGGTTTCTCTGTATAGCTGTCCTGGAACTCACTTT
46% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 1 transcripts:
ENSMUST00000161861.8
3UTR-3UTR CAA 90 bp AAGCATAAATTTCCTTTACTAATAACTCTCTTCTCCCAGATAAGCTGGCACACGGCTCACCCAGCCACCTaGTGTTTATTAGATGTTGTC +
Preference number: 3 (lower is better)
Translates to: KHKFPLLITLFSQISWHTAHPAT*CLLDVV
Trigger: GACAACATCTAATAAACACAAGGTGGCTGGGTGAGC...CGTGTGCCAGCTTATCTGGGAGAAGAGAGTTATTAGTAAAGGAAATTTATGCTT
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000161861.8
3UTR-3UTR CAA 90 bp CTCCATTCATTCCTTTCATGTGCTAAGGTAGGTGCTCTCTCTATACCTGCAACAGTATTTGTGGTTATTTaGAGAGAGATGGGGAAAGTG +
Preference number: 3 (lower is better)
Translates to: LHSFLSCAKVGALSIPATVFVVI*REMGKV
Trigger: CACTTTCCCCATCTCTCTCAAAATAACCACAAATAC...TGTTGCAGGTATAGAGAGAGCACCTACCTTAGCACATGAAAGGAATGAATGGAG
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000161861.8
3UTR-3UTR CAA 90 bp CTCCATTCATTCCTTTCATGTGCTAAGGTAGGTGCTCTCTCTATACCTGCAACACTTCTATTCAAGAATTaGCTGGTAGGCAAACATGTA +
Preference number: 3 (lower is better)
Translates to: LHSFLSCAKVGALSIPATLLFKN*LVGKHV
Trigger: TACATGTTTGCCTACCAGCAAATTCTTGAATAGAAG...TGTTGCAGGTATAGAGAGAGCACCTACCTTAGCACATGAAAGGAATGAATGGAG
41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000161861.8
3UTR CCA 72 bp AACCTAATAGACAGCCATAGTTCATCTGAGAGTCCATaGGATAAAAAGGGAGAATTCTGCAGTTTCTTTAGT +
Preference number: 3 (lower is better)
Translates to: NLIDSHSSSESP*DKKGEFCSFFS
Trigger: ACTAAAGAAACTGCAGAATTCTCCCTTTTTATCCCATGGACTCTCAGATGAACTATGGCTGTCTATTAGGTT
39% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000161861.8
3UTR-3UTR CAA 90 bp TTTCTTCTTCACAATGTAATCTCCATGAAGCTAGGAGCTATTTTGTTGACCATAGGGCAGCACAATACTTaGCATATGGTAAGCTCTAAA +
Preference number: 3 (lower is better)
Translates to: FLLHNVISMKLGAILLTIGQHNT*HMVSSK
Trigger: TTTAGAGCTTACCATATGCAAAGTATTGTGCTGCCC...TATGGTCAACAAAATAGCTCCTAGCTTCATGGAGATTACATTGTGAAGAAGAAA
38% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000161188.9
3UTR TCA 72 bp GGTAATCCAGTGAAGACAGTATGGCAACCTTTATGTTaGATTCAATTCACAGAAATGTACAACACAGCTGAT +
Preference number: 3 (lower is better)
Translates to: GNPVKTVWQPLC*IQFTEMYNTAD
Trigger: ATCAGCTGTGTTGTACATTTCTGTGAATTGAATTCAACATAAAGGTTGCCATACTGTCTTCACTGGATTACC
38% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000161861.8
3UTR CCA 72 bp TATTGTTTAATTTTATCAATAGGTACCCTTCACACCTaGTTTCTTTCCTCCCACTCAAACACAGCATCAATG +
Preference number: 3 (lower is better)
Translates to: YCLILSIGTLHT*FLSSHSNTASM
Trigger: CATTGATGCTGTGTTTGAGTGGGAGGAAAGAAACCAGGTGTGAAGGGTACCTATTGATAAAATTAAACAATA
38% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000161861.8
3UTR GCA 72 bp TTTCTGGGAATTGATTTACTCTTATTCATGCTCATTTaGCATGACAACACACTGACAGATATGAGGATTAAG +
Preference number: 3 (lower is better)
Translates to: FLGIDLLLFMLI*HDNTLTDMRIK
Trigger: CTTAATCCTCATATCTGTCAGTGTGTTGTCATGGCAAATGAGCATGAATAAGAGTAAATCAATTCCCAGAAA
36% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000161861.8
3UTR CCA 72 bp AGACGTTTCTTGTGCAACATGAGGTGTATAAATGTATaGTGGTCTCAATTTCTGATAAATTGTACTCTACAT +
Preference number: 3 (lower is better)
Translates to: RRFLCNMRCINV*WSQFLINCTLH
Trigger: ATGTAGAGTACAATTTATCAGAAATTGAGACCACCATACATTTATACACCTCATGTTGCACAAGAAACGTCT
35% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000161861.8
3UTR CAA 72 bp GAGCACCTTCACCAAAACTTCCTGGCCCCACCTCTGTaGCCCTTGCTTGCCTGGCCTTTATGTGGTCTCCGG +
Preference number: 4 (lower is better)
Translates to: EHLHQNFLAPPL*PLLAWPLCGLR
Trigger: CCGGAGACCACATAAAGGCCAGGCAAGCAAGGGCAACAGAGGTGGGGCCAGGAAGTTTTGGTGAAGGTGCTC
58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000161861.8
3UTR CAA 72 bp ACCAAAACTTCCTGGCCCCACCTCTGTTGCCCTTGCTaGCCTGGCCTTTATGTGGTCTCCGGAGACCTGTCT +
Preference number: 4 (lower is better)
Translates to: TKTSWPHLCCPC*PGLYVVSGDLS
Trigger: AGACAGGTCTCCGGAGACCACATAAAGGCCAGGCAAGCAAGGGCAACAGAGGTGGGGCCAGGAAGTTTTGGT
57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000161861.8
3UTR CAA 72 bp CTTCACCAAAACTTCCTGGCCCCACCTCTGTTGCCCTaGCTTGCCTGGCCTTTATGTGGTCTCCGGAGACCT +
Preference number: 4 (lower is better)
Translates to: LHQNFLAPPLLP*LAWPLCGLRRP
Trigger: AGGTCTCCGGAGACCACATAAAGGCCAGGCAAGCAAGGGCAACAGAGGTGGGGCCAGGAAGTTTTGGTGAAG
57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000161861.8
3UTR CAA 72 bp ATGTGGAGAGATCTGAGGCTATGTCAGGTGACTTCCTaGGTGCCTCTCTACCTCATCATTGAGGCAAGGTTA +
Preference number: 4 (lower is better)
Translates to: MWRDLRLCQVTS*VPLYLIIEARL
Trigger: TAACCTTGCCTCAATGATGAGGTAGAGAGGCACCAAGGAAGTCACCTGACATAGCCTCAGATCTCTCCACAT
49% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000161861.8
CDS-3UTR TCA 90 bp GAAAGCTCACCCAGCCACCTTGTGTTTATTAGATGTTGTCCTCATTTACCCGTCTGGACTGGGTCAGCTTaGAACTATGTGGCAGATCTG +
Preference number: 4 (lower is better)
Translates to: ESSPSHLVFIRCCPHLPVWTGSA*NYVADL
Trigger: CAGATCTGCCACATAGTTTCAAGCTGACCCAGTCCA...GACGGGTAAATGAGGACAACATCTAATAAACACAAGGTGGCTGGGTGAGCTTTC
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000161861.8
CDS-3UTR GCA 90 bp GAAAGCTCACCCAGCCACCTTGTGTTTATTAGATGTTGTCCTCATTTACCCGTCTGTTCAGAACTGGCCTaGAGCTCCAGGGTTCTTTCT +
Preference number: 4 (lower is better)
Translates to: ESSPSHLVFIRCCPHLPVCSELA*SSRVLS
Trigger: AGAAAGAACCCTGGAGCTGCAGGCCAGTTCTGAACA...GACGGGTAAATGAGGACAACATCTAATAAACACAAGGTGGCTGGGTGAGCTTTC
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000161861.8
CDS-3UTR GCA 90 bp GAAAGCTCACCCAGCCACCTTGTGTTTATTAGATGTTGTCCTCATTTACCCGTCCCGCCTTCTGGTCAGTaGATTGAAGGACTCTTTGCA +
Preference number: 4 (lower is better)
Translates to: ESSPSHLVFIRCCPHLPVPPSGQ*IEGLFA
Trigger: TGCAAAGAGTCCTTCAATGCACTGACCAGAAGGCGG...GACGGGTAAATGAGGACAACATCTAATAAACACAAGGTGGCTGGGTGAGCTTTC
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000161861.8
CDS-3UTR CCA 90 bp GAAAGCTCACCCAGCCACCTTGTGTTTATTAGATGTTGTCCTCATTTACCCGTCCAGCCACTACACCATTaGCCAAACAACCATGTTGCC +
Preference number: 4 (lower is better)
Translates to: ESSPSHLVFIRCCPHLPVQPLHH*PNNHVA
Trigger: GGCAACATGGTTGTTTGGCCAATGGTGTAGTGGCTG...GACGGGTAAATGAGGACAACATCTAATAAACACAAGGTGGCTGGGTGAGCTTTC
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000161861.8
CDS-3UTR TCA 90 bp GAAAGCTCACCCAGCCACCTTGTGTTTATTAGATGTTGTCCTCATTTACCCGTCCTCTGGTTCGAACTGTaGATTTTGAGCCAACCAAGC +
Preference number: 4 (lower is better)
Translates to: ESSPSHLVFIRCCPHLPVLWFEL*ILSQPS
Trigger: GCTTGGTTGGCTCAAAATTCACAGTTCGAACCAGAG...GACGGGTAAATGAGGACAACATCTAATAAACACAAGGTGGCTGGGTGAGCTTTC
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000161861.8
CDS-3UTR GCA 90 bp TTCTTTCTCTTCATGGGGCAGCACAATACTTTGCATATGGTAAGCTCTAAAACACCGTCCCTGGAGTCCTaGAGCTGCTGTCAGAAGCAT +
Preference number: 4 (lower is better)
Translates to: FFLFMGQHNTLHMVSSKTPSLES*SCCQKH
Trigger: ATGCTTCTGACAGCAGCTGCAGGACTCCAGGGACGG...TGTTTTAGAGCTTACCATATGCAAAGTATTGTGCTGCCCCATGAAGAGAAAGAA
47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000161188.9
CDS-3UTR GCA 90 bp AAGCATAAATTTCCTTTACTAATAACTCTCTTCTCCCAGATAAGCTGGCACACGCCGTCCCTGGAGTCCTaGAGCTGCTGTCAGAAGCAT +
Preference number: 4 (lower is better)
Translates to: KHKFPLLITLFSQISWHTPSLES*SCCQKH
Trigger: ATGCTTCTGACAGCAGCTGCAGGACTCCAGGGACGG...CGTGTGCCAGCTTATCTGGGAGAAGAGAGTTATTAGTAAAGGAAATTTATGCTT
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000161861.8
CDS-3UTR TCA 90 bp CTCCATTCATTCCTTTCATGTGCTAAGGTAGGTGCTCTCTCTATACCTGCAACAACTATGCTTCCCTTTTaGGGTACAAGAAGTAGGGGC +
Preference number: 4 (lower is better)
Translates to: LHSFLSCAKVGALSIPATTMLPF*GTRSRG
Trigger: GCCCCTACTTCTTGTACCTCAAAAGGGAAGCATAGT...TGTTGCAGGTATAGAGAGAGCACCTACCTTAGCACATGAAAGGAATGAATGGAG
46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000161861.8
CDS-3UTR GCA 90 bp CTCCATTCATTCCTTTCATGTGCTAAGGTAGGTGCTCTCTCTATACCTGCAACACTGGAGTCCTGCAGCTaGTGTCAGAAGCATTTTCAT +
Preference number: 4 (lower is better)
Translates to: LHSFLSCAKVGALSIPATLESCS*CQKHFH
Trigger: ATGAAAATGCTTCTGACAGCAGCTGCAGGACTCCAG...TGTTGCAGGTATAGAGAGAGCACCTACCTTAGCACATGAAAGGAATGAATGGAG
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000161861.8
CDS-3UTR CCA 90 bp CTCCATTCATTCCTTTCATGTGCTAAGGTAGGTGCTCTCTCTATACCTGCAACATTCTGTGGAGAGTGCTaGGGCAGAAATTTTCGTGGA +
Preference number: 4 (lower is better)
Translates to: LHSFLSCAKVGALSIPATFCGEC*GRNFRG
Trigger: TCCACGAAAATTTCTGCCCCAGCACTCTCCACAGAA...TGTTGCAGGTATAGAGAGAGCACCTACCTTAGCACATGAAAGGAATGAATGGAG
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000161861.8
CDS-3UTR CCA 90 bp ATGAAGCTAGGAGCTATTTTGTTGACCATATTCTTTCTCTTCATGGGGCAGCACCAGCCACTACACCATTaGCCAAACAACCATGTTGCC +
Preference number: 4 (lower is better)
Translates to: MKLGAILLTIFFLFMGQHQPLHH*PNNHVA
Trigger: GGCAACATGGTTGTTTGGCCAATGGTGTAGTGGCTG...GTGCTGCCCCATGAAGAGAAAGAATATGGTCAACAAAATAGCTCCTAGCTTCAT
46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000161188.9
CDS-3UTR TCA 90 bp GCTAGGAGCTATTTTGTTGACCATATTCTTTCTCTTCATGGGGCAGCACAATACCTCTGGTTCGAACTGTaGATTTTGAGCCAACCAAGC +
Preference number: 4 (lower is better)
Translates to: ARSYFVDHILSLHGAAQYLWFEL*ILSQPS
Trigger: GCTTGGTTGGCTCAAAATTCACAGTTCGAACCAGAG...GTATTGTGCTGCCCCATGAAGAGAAAGAATATGGTCAACAAAATAGCTCCTAGC
44% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 1 transcripts:
ENSMUST00000161188.9
CDS-3UTR GCA 90 bp CTCCATTCATTCCTTTCATGTGCTAAGGTAGGTGCTCTCTCTATACCTGCAACATCCTTCACTTCATGGTaGTGGTCCAACGTATCCAAT +
Preference number: 4 (lower is better)
Translates to: LHSFLSCAKVGALSIPATSFTSW*WSNVSN
Trigger: ATTGGATACGTTGGACCAGCACCATGAAGTGAAGGA...TGTTGCAGGTATAGAGAGAGCACCTACCTTAGCACATGAAAGGAATGAATGGAG
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000161861.8
CDS-3UTR CCA 90 bp AAAGTGAGTTCCAGGACAGCTATACAGAGAAACCTTGTCTCGAAAAACCAAAAATGTCTTGTTCAGAACTaGCCTGCAGCTCCAGGGTTC +
Preference number: 4 (lower is better)
Translates to: KVSSRTAIQRNLVSKNQKCLVQN*PAAPGF
Trigger: GAACCCTGGAGCTGCAGGCCAGTTCTGAACAAGACA...TTTTTGGTTTTTCGAGACAAGGTTTCTCTGTATAGCTGTCCTGGAACTCACTTT
44% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 1 transcripts:
ENSMUST00000161861.8
CDS-3UTR TCA 90 bp TTTCTCTTCATGGGGCAGCACAATACTTTGCATATGGTAAGCTCTAAAACATACATAGGCTCCAGCATGTaGTGCTGCAGCGTTAAGCTT +
Preference number: 4 (lower is better)
Translates to: FLFMGQHNTLHMVSSKTYIGSSM*CCSVKL
Trigger: AAGCTTAACGCTGCAGCATCACATGCTGGAGCCTAT...GTATGTTTTAGAGCTTACCATATGCAAAGTATTGTGCTGCCCCATGAAGAGAAA
43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000161188.9
CDS-3UTR TCA 90 bp CTCCATTCATTCCTTTCATGTGCTAAGGTAGGTGCTCTCTCTATACCTGCAACAGCATCAATACTTTCTTaGAGGGCCTTGATCCATTCT +
Preference number: 4 (lower is better)
Translates to: LHSFLSCAKVGALSIPATASILS*RALIHS
Trigger: AGAATGGATCAAGGCCCTTCAAGAAAGTATTGATGC...TGTTGCAGGTATAGAGAGAGCACCTACCTTAGCACATGAAAGGAATGAATGGAG
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000161861.8
CDS-3UTR GCA 90 bp GAAAGCTCACCCAGCCACCTTGTGTTTATTAGATGTTGTCCTCATTTACCCGTCTCCGATACCTTACTATaGTTCCCTTTTGAGGTACAA +
Preference number: 4 (lower is better)
Translates to: ESSPSHLVFIRCCPHLPVSDTLL*FPFEVQ
Trigger: TTGTACCTCAAAAGGGAAGCATAGTAAGGTATCGGA...GACGGGTAAATGAGGACAACATCTAATAAACACAAGGTGGCTGGGTGAGCTTTC
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000161861.8
CDS-3UTR GCA 90 bp CTCCATTCATTCCTTTCATGTGCTAAGGTAGGTGCTCTCTCTATACCTGCAACAGTAGTTTCCCATTCTTaGATTCGTTTCTCCAGCTCA +
Preference number: 4 (lower is better)
Translates to: LHSFLSCAKVGALSIPATVVSHS*IRFSSS
Trigger: TGAGCTGGAGAAACGAATGCAAGAATGGGAAACTAC...TGTTGCAGGTATAGAGAGAGCACCTACCTTAGCACATGAAAGGAATGAATGGAG
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000161861.8
CDS-3UTR GCA 90 bp TTCATGGGGCAGCACAATACTTTGCATATGGTAAGCTCTAAAACATACTTCCTATGTTCAGAACTGGCCTaGAGCTCCAGGGTTCTTTCT +
Preference number: 4 (lower is better)
Translates to: FMGQHNTLHMVSSKTYFLCSELA*SSRVLS
Trigger: AGAAAGAACCCTGGAGCTGCAGGCCAGTTCTGAACA...TAGGAAGTATGTTTTAGAGCTTACCATATGCAAAGTATTGTGCTGCCCCATGAA
43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000161188.9
CDS-3UTR GCA 90 bp AAAGGTTCCATTTTCCACATTATTTTAGAACTTCAACAGAAGAATGGCTCTGCAAGCACAAGGGGGTCTTaGTTGGGGATCACACACCAG +
Preference number: 4 (lower is better)
Translates to: KGSIFHIILELQQKNGSASTRGS*LGITHQ
Trigger: CTGGTGTGTGATCCCCAAGCAAGACCCCCTTGTGCT...TGCAGAGCCATTCTTCTGTTGAAGTTCTAAAATAATGTGGAAAATGGAACCTTT
43% GC, longest homopolymer 5 nt, total homopolymer stretches 17 nt.
Matches the following 1 transcripts:
ENSMUST00000161861.8
CDS-3UTR GCA 90 bp AAGCATAAATTTCCTTTACTAATAACTCTCTTCTCCCAGATAAGCTGGCACACGTCTGCAGCAAAGCTATaGACAGACTTGGACTGGGTC +
Preference number: 4 (lower is better)
Translates to: KHKFPLLITLFSQISWHTSAAKL*TDLDWV
Trigger: GACCCAGTCCAAGTCTGTGCATAGCTTTGCTGCAGA...CGTGTGCCAGCTTATCTGGGAGAAGAGAGTTATTAGTAAAGGAAATTTATGCTT
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000161861.8
CDS-3UTR CCA 90 bp GAAAGCTCACCCAGCCACCTTGTGTTTATTAGATGTTGTCCTCATTTACCCGTCATTCTGACTTTTTCTTaGGTCCAGGGAGATTGTTCA +
Preference number: 4 (lower is better)
Translates to: ESSPSHLVFIRCCPHLPVILTFS*VQGDCS
Trigger: TGAACAATCTCCCTGGACCCAAGAAAAAGTCAGAAT...GACGGGTAAATGAGGACAACATCTAATAAACACAAGGTGGCTGGGTGAGCTTTC
43% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000161861.8
CDS-3UTR TCA 90 bp AATCTCCATGAAGCTAGGAGCTATTTTGTTGACCATATTCTTTCTCTTCATGGGACTATGCTTCCCTTTTaGGGTACAAGAAGTAGGGGC +
Preference number: 4 (lower is better)
Translates to: NLHEARSYFVDHILSLHGTMLPF*GTRSRG
Trigger: GCCCCTACTTCTTGTACCTCAAAAGGGAAGCATAGT...CCCATGAAGAGAAAGAATATGGTCAACAAAATAGCTCCTAGCTTCATGGAGATT
42% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 1 transcripts:
ENSMUST00000161188.9
CDS-3UTR TCA 90 bp GAAAGCTCACCCAGCCACCTTGTGTTTATTAGATGTTGTCCTCATTTACCCGTCGAAGCATTTTCATCATaGCTATTGGCTATGGATGAT +
Preference number: 4 (lower is better)
Translates to: ESSPSHLVFIRCCPHLPVEAFSS*LLAMDD
Trigger: ATCATCCATAGCCAATAGTCATGATGAAAATGCTTC...GACGGGTAAATGAGGACAACATCTAATAAACACAAGGTGGCTGGGTGAGCTTTC
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000161861.8
CDS-3UTR TCA 90 bp CTCCATTCATTCCTTTCATGTGCTAAGGTAGGTGCTCTCTCTATACCTGCAACACAGATCTTCTGTTTCTaGATCTCTTCAGTCACTGAT +
Preference number: 4 (lower is better)
Translates to: LHSFLSCAKVGALSIPATQIFCF*ISSVTD
Trigger: ATCAGTGACTGAAGAGATTCAGAAACAGAAGATCTG...TGTTGCAGGTATAGAGAGAGCACCTACCTTAGCACATGAAAGGAATGAATGGAG
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000161861.8
CDS-3UTR GCA 90 bp AAGCATAAATTTCCTTTACTAATAACTCTCTTCTCCCAGATAAGCTGGCACACGTGCTTCTGTGGAGAGTaGTGGGGCAGAAATTTTCGT +
Preference number: 4 (lower is better)
Translates to: KHKFPLLITLFSQISWHTCFCGE*WGRNFR
Trigger: ACGAAAATTTCTGCCCCAGCACTCTCCACAGAAGCA...CGTGTGCCAGCTTATCTGGGAGAAGAGAGTTATTAGTAAAGGAAATTTATGCTT
42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000161861.8
CDS-3UTR GCA 90 bp TTTCTCTTCATGGGGCAGCACAATACTTTGCATATGGTAAGCTCTAAAACATACTTCCATCTGGTTTTGTaGAGCCACTACACCATTGGC +
Preference number: 4 (lower is better)
Translates to: FLFMGQHNTLHMVSSKTYFHLVL*SHYTIG
Trigger: GCCAATGGTGTAGTGGCTGCACAAAACCAGATGGAA...GTATGTTTTAGAGCTTACCATATGCAAAGTATTGTGCTGCCCCATGAAGAGAAA
42% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 1 transcripts:
ENSMUST00000161188.9
CDS-3UTR GCA 90 bp AATCTCCATGAAGCTAGGAGCTATTTTGTTGACCATATTCTTTCTCTTCATGGGCTGGAGTCCTGCAGCTaGTGTCAGAAGCATTTTCAT +
Preference number: 4 (lower is better)
Translates to: NLHEARSYFVDHILSLHGLESCS*CQKHFH
Trigger: ATGAAAATGCTTCTGACAGCAGCTGCAGGACTCCAG...CCCATGAAGAGAAAGAATATGGTCAACAAAATAGCTCCTAGCTTCATGGAGATT
42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000161188.9
CDS-3UTR CCA 90 bp CACAATGTAATCTCCATGAAGCTAGGAGCTATTTTGTTGACCATATTCTTTCTCCTGCCTCCTTCAAAGTaGCTGATGAGATCCGATACC +
Preference number: 4 (lower is better)
Translates to: HNVISMKLGAILLTIFFLLPPSK*LMRSDT
Trigger: GGTATCGGATCTCATCAGCCACTTTGAAGGAGGCAG...GAGAAAGAATATGGTCAACAAAATAGCTCCTAGCTTCATGGAGATTACATTGTG
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000161188.9
CDS-3UTR CCA 90 bp TTCATGGGGCAGCACAATACTTTGCATATGGTAAGCTCTAAAACATACTTCCTATTCTGTGGAGAGTGCTaGGGCAGAAATTTTCGTGGA +
Preference number: 4 (lower is better)
Translates to: FMGQHNTLHMVSSKTYFLFCGEC*GRNFRG
Trigger: TCCACGAAAATTTCTGCCCCAGCACTCTCCACAGAA...TAGGAAGTATGTTTTAGAGCTTACCATATGCAAAGTATTGTGCTGCCCCATGAA
42% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 1 transcripts:
ENSMUST00000161188.9
CDS-3UTR CCA 90 bp CAATGTAATCTCCATGAAGCTAGGAGCTATTTTGTTGACCATATTCTTTCTCTTCCCCTGAGTCTGATCTaGGTCGTTTTCCTGCTTCTG +
Preference number: 4 (lower is better)
Translates to: QCNLHEARSYFVDHILSLPLSLI*VVFLLL
Trigger: CAGAAGCAGGAAAACGACCCAGATCAGACTCAGGGG...AAGAGAAAGAATATGGTCAACAAAATAGCTCCTAGCTTCATGGAGATTACATTG
42% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 1 transcripts:
ENSMUST00000161188.9
CDS-3UTR CCA 90 bp TTCTTTCTCTTCATGGGGCAGCACAATACTTTGCATATGGTAAGCTCTAAAACATGCATCATTCCAGTCTaGGGAGTCAGGAGACAACTT +
Preference number: 4 (lower is better)
Translates to: FFLFMGQHNTLHMVSSKTCIIPV*GVRRQL
Trigger: AAGTTGTCTCCTGACTCCCCAGACTGGAATGATGCA...TGTTTTAGAGCTTACCATATGCAAAGTATTGTGCTGCCCCATGAAGAGAAAGAA
42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000161188.9
CDS-3UTR CCA 90 bp CAATGTAATCTCCATGAAGCTAGGAGCTATTTTGTTGACCATATTCTTTCTCTTTGTCTTGTTCAGAACTaGCCTGCAGCTCCAGGGTTC +
Preference number: 4 (lower is better)
Translates to: QCNLHEARSYFVDHILSLCLVQN*PAAPGF
Trigger: GAACCCTGGAGCTGCAGGCCAGTTCTGAACAAGACA...AAGAGAAAGAATATGGTCAACAAAATAGCTCCTAGCTTCATGGAGATTACATTG
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000161188.9
3UTR CAA 72 bp CTTCACAATGTAATCTCCATGAAGCTAGGAGCTATTTaGTTGACCATATTCTTTCTCTTCATGGGGCAGCAC +
Preference number: 4 (lower is better)
Translates to: LHNVISMKLGAI*LTIFFLFMGQH
Trigger: GTGCTGCCCCATGAAGAGAAAGAATATGGTCAACAAAATAGCTCCTAGCTTCATGGAGATTACATTGTGAAG
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000161188.9
CDS-3UTR TCA 90 bp AAAGGTTCCATTTTCCACATTATTTTAGAACTTCAACAGAAGAATGGCTCTGCAATAGGCTCCAGCATGTaGTGCTGCAGCGTTAAGCTT +
Preference number: 4 (lower is better)
Translates to: KGSIFHIILELQQKNGSAIGSSM*CCSVKL
Trigger: AAGCTTAACGCTGCAGCATCACATGCTGGAGCCTAT...TGCAGAGCCATTCTTCTGTTGAAGTTCTAAAATAATGTGGAAAATGGAACCTTT
41% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000161861.8
CDS-3UTR TCA 90 bp AAGCTAGGAGCTATTTTGTTGACCATATTCTTTCTCTTCATGGGGCAGCACAATTCCGAGCTGCTAGTTTaGGGATTTGTCCTTCTTTTA +
Preference number: 4 (lower is better)
Translates to: KLGAILLTIFFLFMGQHNSELLV*GFVLLL
Trigger: TAAAAGAAGGACAAATCCTCAAACTAGCAGCTCGGA...ATTGTGCTGCCCCATGAAGAGAAAGAATATGGTCAACAAAATAGCTCCTAGCTT
41% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 1 transcripts:
ENSMUST00000161188.9
CDS-3UTR TCA 90 bp CTCCATTCATTCCTTTCATGTGCTAAGGTAGGTGCTCTCTCTATACCTGCAACATTGCGATTGCATTTCTaGAAGTTTCATGCCTTTGAT +
Preference number: 4 (lower is better)
Translates to: LHSFLSCAKVGALSIPATLRLHF*KFHAFD
Trigger: ATCAAAGGCATGAAACTTTCAGAAATGCAATCGCAA...TGTTGCAGGTATAGAGAGAGCACCTACCTTAGCACATGAAAGGAATGAATGGAG
41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000161861.8
CDS-3UTR TCA 90 bp AAAGTGAGTTCCAGGACAGCTATACAGAGAAACCTTGTCTCGAAAAACCAAAAATTCTGGTCAGTGCATTaGAGGACTCTTTGCACTTCA +
Preference number: 4 (lower is better)
Translates to: KVSSRTAIQRNLVSKNQKFWSVH*RTLCTS
Trigger: TGAAGTGCAAAGAGTCCTTCAATGCACTGACCAGAA...TTTTTGGTTTTTCGAGACAAGGTTTCTCTGTATAGCTGTCCTGGAACTCACTTT
41% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 1 transcripts:
ENSMUST00000161861.8
CDS-3UTR GCA 90 bp TTTCTCTTCATGGGGCAGCACAATACTTTGCATATGGTAAGCTCTAAAACATACTCCTTCACTTCATGGTaGTGGTCCAACGTATCCAAT +
Preference number: 4 (lower is better)
Translates to: FLFMGQHNTLHMVSSKTYSFTSW*WSNVSN
Trigger: ATTGGATACGTTGGACCAGCACCATGAAGTGAAGGA...GTATGTTTTAGAGCTTACCATATGCAAAGTATTGTGCTGCCCCATGAAGAGAAA
41% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000161188.9
CDS-3UTR GCA 90 bp TTTCTTCTTCACAATGTAATCTCCATGAAGCTAGGAGCTATTTTGTTGACCATACCGCCTTCTGGTCAGTaGATTGAAGGACTCTTTGCA +
Preference number: 4 (lower is better)
Translates to: FLLHNVISMKLGAILLTIPPSGQ*IEGLFA
Trigger: TGCAAAGAGTCCTTCAATGCACTGACCAGAAGGCGG...TATGGTCAACAAAATAGCTCCTAGCTTCATGGAGATTACATTGTGAAGAAGAAA
41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000161188.9
CDS-3UTR CCA 90 bp AAAGGTTCCATTTTCCACATTATTTTAGAACTTCAACAGAAGAATGGCTCTGCACTGCCTCCTTCAAAGTaGCTGATGAGATCCGATACC +
Preference number: 4 (lower is better)
Translates to: KGSIFHIILELQQKNGSALPPSK*LMRSDT
Trigger: GGTATCGGATCTCATCAGCCACTTTGAAGGAGGCAG...TGCAGAGCCATTCTTCTGTTGAAGTTCTAAAATAATGTGGAAAATGGAACCTTT
41% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000161861.8
CDS-3UTR CCA 90 bp GAAAGCTCACCCAGCCACCTTGTGTTTATTAGATGTTGTCCTCATTTACCCGTCTATCTGGAAAGTGTGTaGATATTCTTCATTGTGAGT +
Preference number: 4 (lower is better)
Translates to: ESSPSHLVFIRCCPHLPVYLESV*IFFIVS
Trigger: ACTCACAATGAAGAATATCCACACACTTTCCAGATA...GACGGGTAAATGAGGACAACATCTAATAAACACAAGGTGGCTGGGTGAGCTTTC
41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000161861.8
CDS-3UTR CCA 90 bp CTCCATTCATTCCTTTCATGTGCTAAGGTAGGTGCTCTCTCTATACCTGCAACATCTTTCCCAGATATCTaGAAAGTGTGTGGATATTCT +
Preference number: 4 (lower is better)
Translates to: LHSFLSCAKVGALSIPATSFPDI*KVCGYS
Trigger: AGAATATCCACACACTTTCCAGATATCTGGGAAAGA...TGTTGCAGGTATAGAGAGAGCACCTACCTTAGCACATGAAAGGAATGAATGGAG
41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000161861.8
CDS-3UTR TCA 90 bp TTTCTCTTCATGGGGCAGCACAATACTTTGCATATGGTAAGCTCTAAAACATACAATCTCTTCAGTCACTaGTTTAAACTGGGGAACACG +
Preference number: 4 (lower is better)
Translates to: FLFMGQHNTLHMVSSKTYNLFSH*FKLGNT
Trigger: CGTGTTCCCCAGTTTAAATCAGTGACTGAAGAGATT...GTATGTTTTAGAGCTTACCATATGCAAAGTATTGTGCTGCCCCATGAAGAGAAA
40% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 1 transcripts:
ENSMUST00000161188.9
CDS-3UTR TCA 90 bp AAGCATAAATTTCCTTTACTAATAACTCTCTTCTCCCAGATAAGCTGGCACACGAATCTCTTCAGTCACTaGTTTAAACTGGGGAACACG +
Preference number: 4 (lower is better)
Translates to: KHKFPLLITLFSQISWHTNLFSH*FKLGNT
Trigger: CGTGTTCCCCAGTTTAAATCAGTGACTGAAGAGATT...CGTGTGCCAGCTTATCTGGGAGAAGAGAGTTATTAGTAAAGGAAATTTATGCTT
40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000161861.8
CDS-3UTR TCA 90 bp TTGTTGACCATATTCTTTCTCTTCATGGGGCAGCACAATACTTTGCATATGGTATCGAACTGTGAATTTTaGGCCAACCAAGCTGAATCT +
Preference number: 4 (lower is better)
Translates to: LLTIFFLFMGQHNTLHMVSNCEF*ANQAES
Trigger: AGATTCAGCTTGGTTGGCTCAAAATTCACAGTTCGA...TACCATATGCAAAGTATTGTGCTGCCCCATGAAGAGAAAGAATATGGTCAACAA
40% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000161188.9
CDS-3UTR GCA 90 bp TTTCTTCTTCACAATGTAATCTCCATGAAGCTAGGAGCTATTTTGTTGACCATATGCTTCTGTGGAGAGTaGTGGGGCAGAAATTTTCGT +
Preference number: 4 (lower is better)
Translates to: FLLHNVISMKLGAILLTICFCGE*WGRNFR
Trigger: ACGAAAATTTCTGCCCCAGCACTCTCCACAGAAGCA...TATGGTCAACAAAATAGCTCCTAGCTTCATGGAGATTACATTGTGAAGAAGAAA
40% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 1 transcripts:
ENSMUST00000161188.9
CDS-3UTR GCA 90 bp ATGGGGCAGCACAATACTTTGCATATGGTAAGCTCTAAAACATACTTCCTAACTGTAGTTTCCCATTCTTaGATTCGTTTCTCCAGCTCA +
Preference number: 4 (lower is better)
Translates to: MGQHNTLHMVSSKTYFLTVVSHS*IRFSSS
Trigger: TGAGCTGGAGAAACGAATGCAAGAATGGGAAACTAC...AGTTAGGAAGTATGTTTTAGAGCTTACCATATGCAAAGTATTGTGCTGCCCCAT
40% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000161188.9
CDS-3UTR GCA 90 bp TTTCTCTTCATGGGGCAGCACAATACTTTGCATATGGTAAGCTCTAAAACATACAATGGCGCCAACTTTTaGAGGATATCTCCAATTCTG +
Preference number: 4 (lower is better)
Translates to: FLFMGQHNTLHMVSSKTYNGANF*RISPIL
Trigger: CAGAATTGGAGATATCCTGCAAAAGTTGGCGCCATT...GTATGTTTTAGAGCTTACCATATGCAAAGTATTGTGCTGCCCCATGAAGAGAAA
40% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 1 transcripts:
ENSMUST00000161188.9
CDS-3UTR CCA 90 bp TTTCTCTTCATGGGGCAGCACAATACTTTGCATATGGTAAGCTCTAAAACATACTCTTCACATTCCATCTaGTTTTGTGCAGCCACTACA +
Preference number: 4 (lower is better)
Translates to: FLFMGQHNTLHMVSSKTYSSHSI*FCAATT
Trigger: TGTAGTGGCTGCACAAAACCAGATGGAATGTGAAGA...GTATGTTTTAGAGCTTACCATATGCAAAGTATTGTGCTGCCCCATGAAGAGAAA
40% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 1 transcripts:
ENSMUST00000161188.9
CDS-3UTR CCA 90 bp AAAGTGAGTTCCAGGACAGCTATACAGAGAAACCTTGTCTCGAAAAACCAAAAATCTTCACATTCCATCTaGTTTTGTGCAGCCACTACA +
Preference number: 4 (lower is better)
Translates to: KVSSRTAIQRNLVSKNQKSSHSI*FCAATT
Trigger: TGTAGTGGCTGCACAAAACCAGATGGAATGTGAAGA...TTTTTGGTTTTTCGAGACAAGGTTTCTCTGTATAGCTGTCCTGGAACTCACTTT
40% GC, longest homopolymer 5 nt, total homopolymer stretches 14 nt.
Matches the following 1 transcripts:
ENSMUST00000161861.8
CDS-3UTR CCA 90 bp AAAGGTTCCATTTTCCACATTATTTTAGAACTTCAACAGAAGAATGGCTCTGCATGCATCATTCCAGTCTaGGGAGTCAGGAGACAACTT +
Preference number: 4 (lower is better)
Translates to: KGSIFHIILELQQKNGSACIIPV*GVRRQL
Trigger: AAGTTGTCTCCTGACTCCCCAGACTGGAATGATGCA...TGCAGAGCCATTCTTCTGTTGAAGTTCTAAAATAATGTGGAAAATGGAACCTTT
40% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000161861.8
3UTR CAA 72 bp CACAATGTAATCTCCATGAAGCTAGGAGCTATTTTGTaGACCATATTCTTTCTCTTCATGGGGCAGCACAAT +
Preference number: 4 (lower is better)
Translates to: HNVISMKLGAIL*TIFFLFMGQHN
Trigger: ATTGTGCTGCCCCATGAAGAGAAAGAATATGGTCAACAAAATAGCTCCTAGCTTCATGGAGATTACATTGTG
40% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000161188.9
CDS-3UTR TCA 90 bp AAGCATAAATTTCCTTTACTAATAACTCTCTTCTCCCAGATAAGCTGGCACACGCAAATCAATGTAACTTaGCAAAACACTGCCTCCTTC +
Preference number: 4 (lower is better)
Translates to: KHKFPLLITLFSQISWHTQINVT*QNTASF
Trigger: GAAGGAGGCAGTGTTTTGTCAAGTTACATTGATTTG...CGTGTGCCAGCTTATCTGGGAGAAGAGAGTTATTAGTAAAGGAAATTTATGCTT
39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000161861.8
CDS-3UTR TCA 90 bp GTTGACCATATTCTTTCTCTTCATGGGGCAGCACAATACTTTGCATATGGTAAGGAAGCATTTTCATCATaGCTATTGGCTATGGATGAT +
Preference number: 4 (lower is better)
Translates to: VDHILSLHGAAQYFAYGKEAFSS*LLAMDD
Trigger: ATCATCCATAGCCAATAGTCATGATGAAAATGCTTC...CTTACCATATGCAAAGTATTGTGCTGCCCCATGAAGAGAAAGAATATGGTCAAC
39% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000161188.9
CDS-3UTR TCA 90 bp AATCTCCATGAAGCTAGGAGCTATTTTGTTGACCATATTCTTTCTCTTCATGGGCAGATCTTCTGTTTCTaGATCTCTTCAGTCACTGAT +
Preference number: 4 (lower is better)
Translates to: NLHEARSYFVDHILSLHGQIFCF*ISSVTD
Trigger: ATCAGTGACTGAAGAGATTCAGAAACAGAAGATCTG...CCCATGAAGAGAAAGAATATGGTCAACAAAATAGCTCCTAGCTTCATGGAGATT
39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000161188.9
CDS-3UTR TCA 90 bp CAATGTAATCTCCATGAAGCTAGGAGCTATTTTGTTGACCATATTCTTTCTCTTTTCTGGTCAGTGCATTaGAGGACTCTTTGCACTTCA +
Preference number: 4 (lower is better)
Translates to: QCNLHEARSYFVDHILSLFWSVH*RTLCTS
Trigger: TGAAGTGCAAAGAGTCCTTCAATGCACTGACCAGAA...AAGAGAAAGAATATGGTCAACAAAATAGCTCCTAGCTTCATGGAGATTACATTG
39% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000161188.9
CDS-3UTR CCA 90 bp TTTCTCTTCATGGGGCAGCACAATACTTTGCATATGGTAAGCTCTAAAACATACATACATCTTAAGGAATaGCGCCAACTTTTGCAGGAT +
Preference number: 4 (lower is better)
Translates to: FLFMGQHNTLHMVSSKTYIHLKE*RQLLQD
Trigger: ATCCTGCAAAAGTTGGCGCCATTCCTTAAGATGTAT...GTATGTTTTAGAGCTTACCATATGCAAAGTATTGTGCTGCCCCATGAAGAGAAA
39% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 1 transcripts:
ENSMUST00000161188.9
CDS-3UTR CCA 90 bp AAGCATAAATTTCCTTTACTAATAACTCTCTTCTCCCAGATAAGCTGGCACACGATACATCTTAAGGAATaGCGCCAACTTTTGCAGGAT +
Preference number: 4 (lower is better)
Translates to: KHKFPLLITLFSQISWHTIHLKE*RQLLQD
Trigger: ATCCTGCAAAAGTTGGCGCCATTCCTTAAGATGTAT...CGTGTGCCAGCTTATCTGGGAGAAGAGAGTTATTAGTAAAGGAAATTTATGCTT
39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000161861.8
CDS-3UTR TCA 90 bp AAAGGTTCCATTTTCCACATTATTTTAGAACTTCAACAGAAGAATGGCTCTGCATCCGAGCTGCTAGTTTaGGGATTTGTCCTTCTTTTA +
Preference number: 4 (lower is better)
Translates to: KGSIFHIILELQQKNGSASELLV*GFVLLL
Trigger: TAAAAGAAGGACAAATCCTCAAACTAGCAGCTCGGA...TGCAGAGCCATTCTTCTGTTGAAGTTCTAAAATAATGTGGAAAATGGAACCTTT
38% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 1 transcripts:
ENSMUST00000161861.8
CDS-3UTR TCA 90 bp AAAGGTTCCATTTTCCACATTATTTTAGAACTTCAACAGAAGAATGGCTCTGCATCGAACTGTGAATTTTaGGCCAACCAAGCTGAATCT +
Preference number: 4 (lower is better)
Translates to: KGSIFHIILELQQKNGSASNCEF*ANQAES
Trigger: AGATTCAGCTTGGTTGGCTCAAAATTCACAGTTCGA...TGCAGAGCCATTCTTCTGTTGAAGTTCTAAAATAATGTGGAAAATGGAACCTTT
38% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 1 transcripts:
ENSMUST00000161861.8
CDS-3UTR TCA 90 bp CTTCACAATGTAATCTCCATGAAGCTAGGAGCTATTTTGTTGACCATATTCTTTGCATCAATACTTTCTTaGAGGGCCTTGATCCATTCT +
Preference number: 4 (lower is better)
Translates to: LHNVISMKLGAILLTIFFASILS*RALIHS
Trigger: AGAATGGATCAAGGCCCTTCAAGAAAGTATTGATGC...AAAGAATATGGTCAACAAAATAGCTCCTAGCTTCATGGAGATTACATTGTGAAG
38% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000161188.9
CDS-3UTR TCA 90 bp ATGGGGCAGCACAATACTTTGCATATGGTAAGCTCTAAAACATACTTCCTAACTTTGCGATTGCATTTCTaGAAGTTTCATGCCTTTGAT +
Preference number: 4 (lower is better)
Translates to: MGQHNTLHMVSSKTYFLTLRLHF*KFHAFD
Trigger: ATCAAAGGCATGAAACTTTCAGAAATGCAATCGCAA...AGTTAGGAAGTATGTTTTAGAGCTTACCATATGCAAAGTATTGTGCTGCCCCAT
38% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000161188.9
CDS-3UTR TCA 90 bp AAAGTGAGTTCCAGGACAGCTATACAGAGAAACCTTGTCTCGAAAAACCAAAAATTTCTTCACTGTCTGTaGATCCACTTATTATCTGGT +
Preference number: 4 (lower is better)
Translates to: KVSSRTAIQRNLVSKNQKFLHCL*IHLLSG
Trigger: ACCAGATAATAAGTGGATTCACAGACAGTGAAGAAA...TTTTTGGTTTTTCGAGACAAGGTTTCTCTGTATAGCTGTCCTGGAACTCACTTT
38% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 1 transcripts:
ENSMUST00000161861.8
CDS-3UTR GCA 90 bp AAAGGTTCCATTTTCCACATTATTTTAGAACTTCAACAGAAGAATGGCTCTGCAAATGGCGCCAACTTTTaGAGGATATCTCCAATTCTG +
Preference number: 4 (lower is better)
Translates to: KGSIFHIILELQQKNGSANGANF*RISPIL
Trigger: CAGAATTGGAGATATCCTGCAAAAGTTGGCGCCATT...TGCAGAGCCATTCTTCTGTTGAAGTTCTAAAATAATGTGGAAAATGGAACCTTT
38% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 1 transcripts:
ENSMUST00000161861.8
CDS-3UTR GCA 90 bp GGGCAGCACAATACTTTGCATATGGTAAGCTCTAAAACATACTTCCTAACTAAGTTTAACCAGTTCCACTaGATTATCAAATCCCTTCAC +
Preference number: 4 (lower is better)
Translates to: GQHNTLHMVSSKTYFLTKFNQFH*IIKSLH
Trigger: GTGAAGGGATTTGATAATGCAGTGGAACTGGTTAAA...CTTAGTTAGGAAGTATGTTTTAGAGCTTACCATATGCAAAGTATTGTGCTGCCC
38% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000161188.9
CDS-3UTR CCA 90 bp TTTCTCTTCATGGGGCAGCACAATACTTTGCATATGGTAAGCTCTAAAACATACTCTTTCCCAGATATCTaGAAAGTGTGTGGATATTCT +
Preference number: 4 (lower is better)
Translates to: FLFMGQHNTLHMVSSKTYSFPDI*KVCGYS
Trigger: AGAATATCCACACACTTTCCAGATATCTGGGAAAGA...GTATGTTTTAGAGCTTACCATATGCAAAGTATTGTGCTGCCCCATGAAGAGAAA
38% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000161188.9
CDS-3UTR CCA 90 bp GGGCAGCACAATACTTTGCATATGGTAAGCTCTAAAACATACTTCCTAACTAAGTGCACTTCATACACATaGTCACTTCATTATCACGTA +
Preference number: 4 (lower is better)
Translates to: GQHNTLHMVSSKTYFLTKCTSYT*SLHYHV
Trigger: TACGTGATAATGAAGTGACCATGTGTATGAAGTGCA...CTTAGTTAGGAAGTATGTTTTAGAGCTTACCATATGCAAAGTATTGTGCTGCCC
38% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000161188.9
CDS-3UTR CCA 90 bp AAGCATAAATTTCCTTTACTAATAACTCTCTTCTCCCAGATAAGCTGGCACACGTGCACTTCATACACATaGTCACTTCATTATCACGTA +
Preference number: 4 (lower is better)
Translates to: KHKFPLLITLFSQISWHTCTSYT*SLHYHV
Trigger: TACGTGATAATGAAGTGACCATGTGTATGAAGTGCA...CGTGTGCCAGCTTATCTGGGAGAAGAGAGTTATTAGTAAAGGAAATTTATGCTT
38% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000161861.8
3UTR CAA 72 bp ACCATATTCTTTCTCTTCATGGGGCAGCACAATACTTaGCATATGGTAAGCTCTAAAACATACTTCCTAACT +
Preference number: 4 (lower is better)
Translates to: TIFFLFMGQHNT*HMVSSKTYFLT
Trigger: AGTTAGGAAGTATGTTTTAGAGCTTACCATATGCAAAGTATTGTGCTGCCCCATGAAGAGAAAGAATATGGT
38% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000161188.9
CDS-3UTR TCA 90 bp TTTCTTCTTCACAATGTAATCTCCATGAAGCTAGGAGCTATTTTGTTGACCATACAAATCAATGTAACTTaGCAAAACACTGCCTCCTTC +
Preference number: 4 (lower is better)
Translates to: FLLHNVISMKLGAILLTIQINVT*QNTASF
Trigger: GAAGGAGGCAGTGTTTTGTCAAGTTACATTGATTTG...TATGGTCAACAAAATAGCTCCTAGCTTCATGGAGATTACATTGTGAAGAAGAAA
37% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000161188.9
CDS-3UTR TCA 90 bp TTTCTTCTTCACAATGTAATCTCCATGAAGCTAGGAGCTATTTTGTTGACCATAATAGCAACATGTTGTTaGATAAGAAGAGGTAGCGCT +
Preference number: 4 (lower is better)
Translates to: FLLHNVISMKLGAILLTIIATCC*IRRGSA
Trigger: AGCGCTACCTCTTCTTATTCAACAACATGTTGCTAT...TATGGTCAACAAAATAGCTCCTAGCTTCATGGAGATTACATTGTGAAGAAGAAA
37% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000161188.9
CDS-3UTR TCA 90 bp AAAGGTTCCATTTTCCACATTATTTTAGAACTTCAACAGAAGAATGGCTCTGCAATAGCAACATGTTGTTaGATAAGAAGAGGTAGCGCT +
Preference number: 4 (lower is better)
Translates to: KGSIFHIILELQQKNGSAIATCC*IRRGSA
Trigger: AGCGCTACCTCTTCTTATTCAACAACATGTTGCTAT...TGCAGAGCCATTCTTCTGTTGAAGTTCTAAAATAATGTGGAAAATGGAACCTTT
37% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000161861.8
CDS-3UTR GCA 90 bp CTTCACAATGTAATCTCCATGAAGCTAGGAGCTATTTTGTTGACCATATTCTTTTCCGATACCTTACTATaGTTCCCTTTTGAGGTACAA +
Preference number: 4 (lower is better)
Translates to: LHNVISMKLGAILLTIFFSDTLL*FPFEVQ
Trigger: TTGTACCTCAAAAGGGAAGCATAGTAAGGTATCGGA...AAAGAATATGGTCAACAAAATAGCTCCTAGCTTCATGGAGATTACATTGTGAAG
37% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 1 transcripts:
ENSMUST00000161188.9
CDS-3UTR CCA 90 bp TTCATGGGGCAGCACAATACTTTGCATATGGTAAGCTCTAAAACATACTTCCTATTTCATCATGACTATTaGCTATGGATGATGCAGAAT +
Preference number: 4 (lower is better)
Translates to: FMGQHNTLHMVSSKTYFLFHHDY*LWMMQN
Trigger: ATTCTGCATCATCCATAGCCAATAGTCATGATGAAA...TAGGAAGTATGTTTTAGAGCTTACCATATGCAAAGTATTGTGCTGCCCCATGAA
37% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000161188.9
CDS-3UTR CCA 90 bp AAGCATAAATTTCCTTTACTAATAACTCTCTTCTCCCAGATAAGCTGGCACACGTTTCATCATGACTATTaGCTATGGATGATGCAGAAT +
Preference number: 4 (lower is better)
Translates to: KHKFPLLITLFSQISWHTFHHDY*LWMMQN
Trigger: ATTCTGCATCATCCATAGCCAATAGTCATGATGAAA...CGTGTGCCAGCTTATCTGGGAGAAGAGAGTTATTAGTAAAGGAAATTTATGCTT
37% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000161861.8
CDS-3UTR CCA 90 bp TTCATGGGGCAGCACAATACTTTGCATATGGTAAGCTCTAAAACATACTTCCTAATTGCACTATTAGAATaGCTTGCTGCTGTAGATATA +
Preference number: 4 (lower is better)
Translates to: FMGQHNTLHMVSSKTYFLIALLE*LAAVDI
Trigger: TATATCTACAGCAGCAAGCCATTCTAATAGTGCAAT...TAGGAAGTATGTTTTAGAGCTTACCATATGCAAAGTATTGTGCTGCCCCATGAA
37% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000161188.9
CDS-3UTR CCA 90 bp ATGGGGCAGCACAATACTTTGCATATGGTAAGCTCTAAAACATACTTCCTAACTTATCTGGAAAGTGTGTaGATATTCTTCATTGTGAGT +
Preference number: 4 (lower is better)
Translates to: MGQHNTLHMVSSKTYFLTYLESV*IFFIVS
Trigger: ACTCACAATGAAGAATATCCACACACTTTCCAGATA...AGTTAGGAAGTATGTTTTAGAGCTTACCATATGCAAAGTATTGTGCTGCCCCAT
37% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000161188.9
CDS-3UTR TCA 90 bp TTTCTTCTTCACAATGTAATCTCCATGAAGCTAGGAGCTATTTTGTTGACCATAATGATGCAGAATCTGTaGTGGTTTCATTTCTTTCTC +
Preference number: 4 (lower is better)
Translates to: FLLHNVISMKLGAILLTIMMQNL*WFHFFL
Trigger: GAGAAAGAAATGAAACCATCACAGATTCTGCATCAT...TATGGTCAACAAAATAGCTCCTAGCTTCATGGAGATTACATTGTGAAGAAGAAA
36% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000161188.9
CDS-3UTR GCA 90 bp AAAGGTTCCATTTTCCACATTATTTTAGAACTTCAACAGAAGAATGGCTCTGCATTTAACCAGTTCCACTaGATTATCAAATCCCTTCAC +
Preference number: 4 (lower is better)
Translates to: KGSIFHIILELQQKNGSAFNQFH*IIKSLH
Trigger: GTGAAGGGATTTGATAATGCAGTGGAACTGGTTAAA...TGCAGAGCCATTCTTCTGTTGAAGTTCTAAAATAATGTGGAAAATGGAACCTTT
36% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000161861.8
3UTR CAA 72 bp ACTGAATATCTAATCATATTCCTTCTATTCAAGAATTaGCTGGTAGGCAAACATGTACTCTTCTTGCTGATC +
Preference number: 4 (lower is better)
Translates to: TEYLIIFLLFKN*LVGKHVLFLLI
Trigger: GATCAGCAAGAAGAGTACATGTTTGCCTACCAGCAAATTCTTGAATAGAAGGAATATGATTAGATATTCAGT
35% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000161861.8
CDS-3UTR GCA 90 bp CAATGTAATCTCCATGAAGCTAGGAGCTATTTTGTTGACCATATTCTTTCTCTTCTCCATTTTTCTTATTaGACTATTAGAATGGCTTGC +
Preference number: 4 (lower is better)
Translates to: QCNLHEARSYFVDHILSLLHFSY*TIRMAC
Trigger: GCAAGCCATTCTAATAGTGCAATAAGAAAAATGGAG...AAGAGAAAGAATATGGTCAACAAAATAGCTCCTAGCTTCATGGAGATTACATTG
34% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000161188.9
CDS-3UTR GCA 90 bp AAAGGTTCCATTTTCCACATTATTTTAGAACTTCAACAGAAGAATGGCTCTGCACTCCATTTTTCTTATTaGACTATTAGAATGGCTTGC +
Preference number: 4 (lower is better)
Translates to: KGSIFHIILELQQKNGSALHFSY*TIRMAC
Trigger: GCAAGCCATTCTAATAGTGCAATAAGAAAAATGGAG...TGCAGAGCCATTCTTCTGTTGAAGTTCTAAAATAATGTGGAAAATGGAACCTTT
34% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 1 transcripts:
ENSMUST00000161861.8
CDS-3UTR CCA 90 bp AAAGGTTCCATTTTCCACATTATTTTAGAACTTCAACAGAAGAATGGCTCTGCAATTGCACTATTAGAATaGCTTGCTGCTGTAGATATA +
Preference number: 4 (lower is better)
Translates to: KGSIFHIILELQQKNGSAIALLE*LAAVDI
Trigger: TATATCTACAGCAGCAAGCCATTCTAATAGTGCAAT...TGCAGAGCCATTCTTCTGTTGAAGTTCTAAAATAATGTGGAAAATGGAACCTTT
34% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000161861.8
CDS TCA 90 bp TATCATCCACAACGTAGCCCAGGAGGGGTATGGTCGCTTGGGCTCTaGCATCCTGAGGAGCGCCATACATGTACAGCACAAGGGGGTCTT +
Preference number: 5 (lower is better)
Translates to: YHPQRSPGGVWSLGL*HPEERHTCTAQGGL
Trigger: AAGACCCCCTTGTGCTGTACATGTATGGCGCTCCTCAGGATGTCAGAGCCCAAGCGACCATACCCCTCCTGGGCTACGTTGTGGATGATA
56% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000069284.14
ENSMUST00000161861.8
ENSMUST00000162671.8
CDS TCA 90 bp TGTGATAATGAGGATGCCTCACTTACATGTCCACATGCCCGGCAGTaGTGCCGCCTTCTGGTCAGTGCATTGAAGGACTCTTTGCACTTC +
Preference number: 5 (lower is better)
Translates to: CDNEDASLTCPHARQ*CRLLVSALKDSLHF
Trigger: GAAGTGCAAAGAGTCCTTCAATGCACTGACCAGAAGGCGGCATCACTGCCGGGCATGTGGACATGTAAGTGAGGCATCCTCATTATCACA
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000161188.9
CDS GCA 90 bp TCTGACTTTTTCTTGGGTCCAGGGAGATTGTTCAAGGTGGCTAGATaGTCACTTGGGCCATCTGGTGTCTCACCTGTGACAGCTAGAAGG +
Preference number: 5 (lower is better)
Translates to: SDFFLGPGRLFKVAR*SLGPSGVSPVTARR
Trigger: CCTTCTAGCTGTCACAGGTGAGACACCAGATGGCCCAAGTGAGCATCTAGCCACCTTGAACAATCTCCCTGGACCCAAGAAAAAGTCAGA
51% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000161861.8
ENSMUST00000162671.8
CDS GCA 90 bp ATGCACAGACTTGGACTGGGTCAGCTTGAAACTATGTGGCAGATCTaGACTCTTAGGCATATCATCCACAACGTAGCCCAGGAGGGGTAT +
Preference number: 5 (lower is better)
Translates to: MHRLGLGQLETMWQI*TLRHIIHNVAQEGY
Trigger: ATACCCCTCCTGGGCTACGTTGTGGATGATATGCCTAAGAGTGCAGATCTGCCACATAGTTTCAAGCTGACCCAGTCCAAGTCTGTGCAT
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000069284.14
ENSMUST00000161861.8
ENSMUST00000162671.8
CDS-3UTR CAA 90 bp CTCCATTCATTCCTTTCATGTGCTAAGGTAGGTGCTCTCTCTATACCTGCAACACAGCACAAGGGGGTCTaGCTTGGGGATCACACACCA +
Preference number: 5 (lower is better)
Translates to: LHSFLSCAKVGALSIPATQHKGV*LGDHTP
Trigger: TGGTGTGTGATCCCCAAGCAAGACCCCCTTGTGCTG...TGTTGCAGGTATAGAGAGAGCACCTACCTTAGCACATGAAAGGAATGAATGGAG
50% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000161861.8
CDS GCA 90 bp ACACTGCCTCCTTCAAAGTGGCTGATGAGATCCGATACCTTACTATaGTTCCCTTTTGAGGTACAAGAAGTAGGGGCCGGATTAGACTCC +
Preference number: 5 (lower is better)
Translates to: TLPPSKWLMRSDTLL*FPFEVQEVGAGLDS
Trigger: GGAGTCTAATCCGGCCCCTACTTCTTGTACCTCAAAAGGGAAGCATAGTAAGGTATCGGATCTCATCAGCCACTTTGAAGGAGGCAGTGT
49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 5 transcripts:
ENSMUST00000069284.14
ENSMUST00000159542.8
ENSMUST00000161188.9
ENSMUST00000161861.8
ENSMUST00000162671.8
CDS GCA 90 bp CTTCTTTTGAGGGAAGCCCTAAGTCCGTCCCTGGAGTCCTGCAGCTaGTGTCAGAAGCATTTTCATCATGACTATTGGCTATGGATGATG +
Preference number: 5 (lower is better)
Translates to: LLLREALSPSLESCS*CQKHFHHDYWLWMM
Trigger: CATCATCCATAGCCAATAGTCATGATGAAAATGCTTCTGACAGCAGCTGCAGGACTCCAGGGACGGACTTAGGGCTTCCCTCAAAAGAAG
49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 5 transcripts:
ENSMUST00000069284.14
ENSMUST00000159542.8
ENSMUST00000161188.9
ENSMUST00000161861.8
ENSMUST00000162671.8
CDS CCA 90 bp CACATGTGTATCAGGAGAGGCGGCAGCAGTCTGAATAGCCATCTCTaGGCTAAGAGTAGTCTCCTTCTCATCTTCACATTCCATCTGGTT +
Preference number: 5 (lower is better)
Translates to: HMCIRRGGSSLNSHL*AKSSLLLIFTFHLV
Trigger: AACCAGATGGAATGTGAAGATGAGAAGGAGACTACTCTTAGCCCAGAGATGGCTATTCAGACTGCTGCCGCCTCTCCTGATACACATGTG
49% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000069284.14
ENSMUST00000159542.8
ENSMUST00000161188.9
ENSMUST00000161861.8
ENSMUST00000162671.8
CDS CCA 90 bp AGCAAAGCTATGCACAGACTTGGACTGGGTCAGCTTGAAACTATGTaGCAGATCTGCACTCTTAGGCATATCATCCACAACGTAGCCCAG +
Preference number: 5 (lower is better)
Translates to: SKAMHRLGLGQLETM*QICTLRHIIHNVAQ
Trigger: CTGGGCTACGTTGTGGATGATATGCCTAAGAGTGCAGATCTGCCACATAGTTTCAAGCTGACCCAGTCCAAGTCTGTGCATAGCTTTGCT
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000069284.14
ENSMUST00000161861.8
ENSMUST00000162671.8
CDS-3UTR CAA 90 bp GAAAGCTCACCCAGCCACCTTGTGTTTATTAGATGTTGTCCTCATTTACCCGTCACAAGGGGGTCTTGCTaGGGGATCACACACCAGATT +
Preference number: 5 (lower is better)
Translates to: ESSPSHLVFIRCCPHLPVTRGSC*GITHQI
Trigger: AATCTGGTGTGTGATCCCCAAGCAAGACCCCCTTGT...GACGGGTAAATGAGGACAACATCTAATAAACACAAGGTGGCTGGGTGAGCTTTC
49% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000161861.8
CDS CCA 90 bp TCTCATCTTCACATTCCATCTGGTTTTGTGCAGCCACTACACCATTaGCCAAACAACCATGTTGCCCCTGAGTCTGATCTGGGTCGTTTT +
Preference number: 5 (lower is better)
Translates to: SHLHIPSGFVQPLHH*PNNHVAPESDLGRF
Trigger: AAAACGACCCAGATCAGACTCAGGGGCAACATGGTTGTTTGGCCAATGGTGTAGTGGCTGCACAAAACCAGATGGAATGTGAAGATGAGA
48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 5 transcripts:
ENSMUST00000069284.14
ENSMUST00000159542.8
ENSMUST00000161188.9
ENSMUST00000161861.8
ENSMUST00000162671.8
CDS CCA 90 bp ATCTCTGGGCTAAGAGTAGTCTCCTTCTCATCTTCACATTCCATCTaGTTTTGTGCAGCCACTACACCATTGGCCAAACAACCATGTTGC +
Preference number: 5 (lower is better)
Translates to: ISGLRVVSFSSSHSI*FCAATTPLAKQPCC
Trigger: GCAACATGGTTGTTTGGCCAATGGTGTAGTGGCTGCACAAAACCAGATGGAATGTGAAGATGAGAAGGAGACTACTCTTAGCCCAGAGAT
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000069284.14
ENSMUST00000159542.8
ENSMUST00000161188.9
ENSMUST00000161861.8
ENSMUST00000162671.8
CDS-3UTR CAA 90 bp ATGGGGCAGCACAATACTTTGCATATGGTAAGCTCTAAAACATACTTCCTAACTCTGGCTCCCCTTCTTTaGAGGGAAGCCCTAAGTCCG +
Preference number: 5 (lower is better)
Translates to: MGQHNTLHMVSSKTYFLTLAPLL*REALSP
Trigger: CGGACTTAGGGCTTCCCTCAAAAGAAGGGGAGCCAG...AGTTAGGAAGTATGTTTTAGAGCTTACCATATGCAAAGTATTGTGCTGCCCCAT
47% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 1 transcripts:
ENSMUST00000161188.9
CDS-3UTR CAA 90 bp TTCATGGGGCAGCACAATACTTTGCATATGGTAAGCTCTAAAACATACTTCCTACCCATTTTCCCTCTCTaGGAGCTCAGCGTCCATCCC +
Preference number: 5 (lower is better)
Translates to: FMGQHNTLHMVSSKTYFLPIFPL*ELSVHP
Trigger: GGGATGGACGCTGAGCTCCAAGAGAGGGAAAATGGG...TAGGAAGTATGTTTTAGAGCTTACCATATGCAAAGTATTGTGCTGCCCCATGAA
47% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 1 transcripts:
ENSMUST00000161188.9
CDS-3UTR CAA 90 bp AAGCATAAATTTCCTTTACTAATAACTCTCTTCTCCCAGATAAGCTGGCACACGCCCATTTTCCCTCTCTaGGAGCTCAGCGTCCATCCC +
Preference number: 5 (lower is better)
Translates to: KHKFPLLITLFSQISWHTPIFPL*ELSVHP
Trigger: GGGATGGACGCTGAGCTCCAAGAGAGGGAAAATGGG...CGTGTGCCAGCTTATCTGGGAGAAGAGAGTTATTAGTAAAGGAAATTTATGCTT
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000161861.8
CDS TCA 90 bp TCCGTCCCTGGAGTCCTGCAGCTGCTGTCAGAAGCATTTTCATCATaGCTATTGGCTATGGATGATGCAGAATCTGTGATGGTTTCATTT +
Preference number: 5 (lower is better)
Translates to: SVPGVLQLLSEAFSS*LLAMDDAESVMVSF
Trigger: AAATGAAACCATCACAGATTCTGCATCATCCATAGCCAATAGTCATGATGAAAATGCTTCTGACAGCAGCTGCAGGACTCCAGGGACGGA
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000069284.14
ENSMUST00000159542.8
ENSMUST00000161188.9
ENSMUST00000161861.8
ENSMUST00000162671.8
CDS-3UTR CAA 90 bp CTCCATTCATTCCTTTCATGTGCTAAGGTAGGTGCTCTCTCTATACCTGCAACATTGGACTGGGTCAGCTaGAAACTATGTGGCAGATCT +
Preference number: 5 (lower is better)
Translates to: LHSFLSCAKVGALSIPATLDWVS*KLCGRS
Trigger: AGATCTGCCACATAGTTTCAAGCTGACCCAGTCCAA...TGTTGCAGGTATAGAGAGAGCACCTACCTTAGCACATGAAAGGAATGAATGGAG
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000161861.8
CDS-3UTR CAA 90 bp CTCCATTCATTCCTTTCATGTGCTAAGGTAGGTGCTCTCTCTATACCTGCAACAAAGCTATGCACAGACTaGGACTGGGTCAGCTTGAAA +
Preference number: 5 (lower is better)
Translates to: LHSFLSCAKVGALSIPATKLCTD*DWVSLK
Trigger: TTTCAAGCTGACCCAGTCCAAGTCTGTGCATAGCTT...TGTTGCAGGTATAGAGAGAGCACCTACCTTAGCACATGAAAGGAATGAATGGAG
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000161861.8
CDS-3UTR CAA 90 bp AAAGTGAGTTCCAGGACAGCTATACAGAGAAACCTTGTCTCGAAAAACCAAAAATGGCTAGATGCTCACTaGGGCCATCTGGTGTCTCAC +
Preference number: 5 (lower is better)
Translates to: KVSSRTAIQRNLVSKNQKWLDAH*GHLVSH
Trigger: GTGAGACACCAGATGGCCCAAGTGAGCATCTAGCCA...TTTTTGGTTTTTCGAGACAAGGTTTCTCTGTATAGCTGTCCTGGAACTCACTTT
46% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 1 transcripts:
ENSMUST00000161861.8
CDS-3UTR CAA 90 bp CTCCATTCATTCCTTTCATGTGCTAAGGTAGGTGCTCTCTCTATACCTGCAACAACATTCCATCTGGTTTaGTGCAGCCACTACACCATT +
Preference number: 5 (lower is better)
Translates to: LHSFLSCAKVGALSIPATTFHLV*CSHYTI
Trigger: AATGGTGTAGTGGCTGCACAAAACCAGATGGAATGT...TGTTGCAGGTATAGAGAGAGCACCTACCTTAGCACATGAAAGGAATGAATGGAG
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000161861.8
CDS-3UTR CAA 90 bp GAAAGCTCACCCAGCCACCTTGTGTTTATTAGATGTTGTCCTCATTTACCCGTCTTCCGAGCTGCTAGTTaGAGGATTTGTCCTTCTTTT +
Preference number: 5 (lower is better)
Translates to: ESSPSHLVFIRCCPHLPVFRAAS*RICPSF
Trigger: AAAAGAAGGACAAATCCTCAAACTAGCAGCTCGGAA...GACGGGTAAATGAGGACAACATCTAATAAACACAAGGTGGCTGGGTGAGCTTTC
44% GC, longest homopolymer 4 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000161861.8
CDS-3UTR CAA 90 bp CTCCATTCATTCCTTTCATGTGCTAAGGTAGGTGCTCTCTCTATACCTGCAACATGTTTCAGTTCCTCATaGTCTGCAGCAAAGCTATGC +
Preference number: 5 (lower is better)
Translates to: LHSFLSCAKVGALSIPATCFSSS*SAAKLC
Trigger: GCATAGCTTTGCTGCAGACAATGAGGAACTGAAACA...TGTTGCAGGTATAGAGAGAGCACCTACCTTAGCACATGAAAGGAATGAATGGAG
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000161861.8
CDS-3UTR CAA 90 bp ATGAAGCTAGGAGCTATTTTGTTGACCATATTCTTTCTCTTCATGGGGCAGCACACATTCCATCTGGTTTaGTGCAGCCACTACACCATT +
Preference number: 5 (lower is better)
Translates to: MKLGAILLTIFFLFMGQHTFHLV*CSHYTI
Trigger: AATGGTGTAGTGGCTGCACAAAACCAGATGGAATGT...GTGCTGCCCCATGAAGAGAAAGAATATGGTCAACAAAATAGCTCCTAGCTTCAT
43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000161188.9
CDS-3UTR CAA 90 bp TTCTTTCTCTTCATGGGGCAGCACAATACTTTGCATATGGTAAGCTCTAAAACACCATTCTTCCTTGTCTaGTTCAGAACTGGCCTGCAG +
Preference number: 5 (lower is better)
Translates to: FFLFMGQHNTLHMVSSKTPFFLV*FRTGLQ
Trigger: CTGCAGGCCAGTTCTGAACAAGACAAGGAAGAATGG...TGTTTTAGAGCTTACCATATGCAAAGTATTGTGCTGCCCCATGAAGAGAAAGAA
43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000161188.9
CDS-3UTR CAA 90 bp AAAGTGAGTTCCAGGACAGCTATACAGAGAAACCTTGTCTCGAAAAACCAAAAACCATTCTTCCTTGTCTaGTTCAGAACTGGCCTGCAG +
Preference number: 5 (lower is better)
Translates to: KVSSRTAIQRNLVSKNQKPFFLV*FRTGLQ
Trigger: CTGCAGGCCAGTTCTGAACAAGACAAGGAAGAATGG...TTTTTGGTTTTTCGAGACAAGGTTTCTCTGTATAGCTGTCCTGGAACTCACTTT
43% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 1 transcripts:
ENSMUST00000161861.8
CDS TCA 90 bp AGAAGAGGTAGCGCTCTTGTGCTGATGTGTTCCGAGCTGCTAGTTTaGGGATTTGTCCTTCTTTTATTAGTTCATTTGAGGGATTTACAA +
Preference number: 5 (lower is better)
Translates to: RRGSALVLMCSELLV*GFVLLLLVHLRDLQ
Trigger: TTGTAAATCCCTCAAATGAACTAATAAAAGAAGGACAAATCCTCAAACTAGCAGCTCGGAACACATCAGCACAAGAGCGCTACCTCTTCT
41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000069284.14
ENSMUST00000161188.9
ENSMUST00000161861.8
ENSMUST00000162671.8
CDS CCA 90 bp CTGCAGCTCCAGGGTTCTTTCTTTCCCAGATATCTGGAAAGTGTGTaGATATTCTTCATTGTGAGTCTCCACAATTTTCATTCCATCAAT +
Preference number: 5 (lower is better)
Translates to: LQLQGSFFPRYLESV*IFFIVSLHNFHSIN
Trigger: ATTGATGGAATGAAAATTGTGGAGACTCACAATGAAGAATATCCACACACTTTCCAGATATCTGGGAAAGAAAGAACCCTGGAGCTGCAG
41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000069284.14
ENSMUST00000161188.9
ENSMUST00000161861.8
ENSMUST00000162671.8
CDS-3UTR CAA 90 bp AAAGTGAGTTCCAGGACAGCTATACAGAGAAACCTTGTCTCGAAAAACCAAAAATGTAGTTTCCCATTCTaGCATTCGTTTCTCCAGCTC +
Preference number: 5 (lower is better)
Translates to: KVSSRTAIQRNLVSKNQKCSFPF*HSFLQL
Trigger: GAGCTGGAGAAACGAATGCAAGAATGGGAAACTACA...TTTTTGGTTTTTCGAGACAAGGTTTCTCTGTATAGCTGTCCTGGAACTCACTTT
41% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 1 transcripts:
ENSMUST00000161861.8
CDS-3UTR CAA 90 bp GTTGACCATATTCTTTCTCTTCATGGGGCAGCACAATACTTTGCATATGGTAAGTTTCAAGTGACTTTTTaGCATCATTCCAGTCTGGGG +
Preference number: 5 (lower is better)
Translates to: VDHILSLHGAAQYFAYGKFQVTF*HHSSLG
Trigger: CCCCAGACTGGAATGATGCAAAAAAGTCACTTGAAA...CTTACCATATGCAAAGTATTGTGCTGCCCCATGAAGAGAAAGAATATGGTCAAC
41% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000161188.9
CDS-3UTR CAA 90 bp GGGCAGCACAATACTTTGCATATGGTAAGCTCTAAAACATACTTCCTAACTAAGGCATTGAAGGACTCTTaGCACTTCATACACATGGTC +
Preference number: 5 (lower is better)
Translates to: GQHNTLHMVSSKTYFLTKALKDS*HFIHMV
Trigger: GACCATGTGTATGAAGTGCAAAGAGTCCTTCAATGC...CTTAGTTAGGAAGTATGTTTTAGAGCTTACCATATGCAAAGTATTGTGCTGCCC
41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000161188.9
CDS-3UTR CAA 90 bp AAAGTGAGTTCCAGGACAGCTATACAGAGAAACCTTGTCTCGAAAAACCAAAAAGCATTGAAGGACTCTTaGCACTTCATACACATGGTC +
Preference number: 5 (lower is better)
Translates to: KVSSRTAIQRNLVSKNQKALKDS*HFIHMV
Trigger: GACCATGTGTATGAAGTGCAAAGAGTCCTTCAATGC...TTTTTGGTTTTTCGAGACAAGGTTTCTCTGTATAGCTGTCCTGGAACTCACTTT
41% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 1 transcripts:
ENSMUST00000161861.8
CDS TCA 90 bp CTTTCTTTCCCAGATATCTGGAAAGTGTGTGGATATTCTTCATTGTaGGTCTCCACAATTTTCATTCCATCAATGCCAACTCTGGTTCGA +
Preference number: 5 (lower is better)
Translates to: LSFPDIWKVCGYSSL*VSTIFIPSMPTLVR
Trigger: TCGAACCAGAGTTGGCATTGATGGAATGAAAATTGTGGAGACTCACAATGAAGAATATCCACACACTTTCCAGATATCTGGGAAAGAAAG
40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000069284.14
ENSMUST00000161188.9
ENSMUST00000161861.8
ENSMUST00000162671.8
CDS GCA 90 bp AGATTTTCTGCCAAGGCTTTGACTTTTCCATGTACTGAAGGAAACTaGACACCTCACTATTTCCTGATACTTCTGCTGATTCAATCTCTA +
Preference number: 5 (lower is better)
Translates to: RFSAKALTFPCTEGN*TPHYFLILLLIQSL
Trigger: TAGAGATTGAATCAGCAGAAGTATCAGGAAATAGTGAGGTGTGCAGTTTCCTTCAGTACATGGAAAAGTCAAAGCCTTGGCAGAAAATCT
40% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000069284.14
ENSMUST00000161861.8
ENSMUST00000162671.8
CDS-3UTR CAA 90 bp CACAATGTAATCTCCATGAAGCTAGGAGCTATTTTGTTGACCATATTCTTTCTCTGTAGTTTCCCATTCTaGCATTCGTTTCTCCAGCTC +
Preference number: 5 (lower is better)
Translates to: HNVISMKLGAILLTIFFLCSFPF*HSFLQL
Trigger: GAGCTGGAGAAACGAATGCAAGAATGGGAAACTACA...GAGAAAGAATATGGTCAACAAAATAGCTCCTAGCTTCATGGAGATTACATTGTG
40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000161188.9
CDS-3UTR CAA 90 bp AAGCATAAATTTCCTTTACTAATAACTCTCTTCTCCCAGATAAGCTGGCACACGTTTCAAGTGACTTTTTaGCATCATTCCAGTCTGGGG +
Preference number: 5 (lower is better)
Translates to: KHKFPLLITLFSQISWHTFQVTF*HHSSLG
Trigger: CCCCAGACTGGAATGATGCAAAAAAGTCACTTGAAA...CGTGTGCCAGCTTATCTGGGAGAAGAGAGTTATTAGTAAAGGAAATTTATGCTT
40% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000161861.8
CDS-3UTR CAA 90 bp ATGGGGCAGCACAATACTTTGCATATGGTAAGCTCTAAAACATACTTCCTAACTTTCCGAGCTGCTAGTTaGAGGATTTGTCCTTCTTTT +
Preference number: 5 (lower is better)
Translates to: MGQHNTLHMVSSKTYFLTFRAAS*RICPSF
Trigger: AAAAGAAGGACAAATCCTCAAACTAGCAGCTCGGAA...AGTTAGGAAGTATGTTTTAGAGCTTACCATATGCAAAGTATTGTGCTGCCCCAT
40% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000161188.9
CDS TCA 90 bp AAGCATTTTCATCATGACTATTGGCTATGGATGATGCAGAATCTGTaGTGGTTTCATTTCTTTCTCCATTCAGCACATGTGTATCAGGAG +
Preference number: 5 (lower is better)
Translates to: KHFHHDYWLWMMQNL*WFHFFLHSAHVYQE
Trigger: CTCCTGATACACATGTGCTGAATGGAGAAAGAAATGAAACCATCACAGATTCTGCATCATCCATAGCCAATAGTCATGATGAAAATGCTT
39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000069284.14
ENSMUST00000159542.8
ENSMUST00000161188.9
ENSMUST00000161861.8
ENSMUST00000162671.8
CDS-3UTR CAA 90 bp TTCATGGGGCAGCACAATACTTTGCATATGGTAAGCTCTAAAACATACTTCCTAGCAAATCAATGTAACTaGACAAAACACTGCCTCCTT +
Preference number: 5 (lower is better)
Translates to: FMGQHNTLHMVSSKTYFLANQCN*TKHCLL
Trigger: AAGGAGGCAGTGTTTTGTCAAGTTACATTGATTTGC...TAGGAAGTATGTTTTAGAGCTTACCATATGCAAAGTATTGTGCTGCCCCATGAA
39% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 1 transcripts:
ENSMUST00000161188.9
CDS-3UTR CAA 90 bp AAGCATAAATTTCCTTTACTAATAACTCTCTTCTCCCAGATAAGCTGGCACACGGCAAATCAATGTAACTaGACAAAACACTGCCTCCTT +
Preference number: 5 (lower is better)
Translates to: KHKFPLLITLFSQISWHTANQCN*TKHCLL
Trigger: AAGGAGGCAGTGTTTTGTCAAGTTACATTGATTTGC...CGTGTGCCAGCTTATCTGGGAGAAGAGAGTTATTAGTAAAGGAAATTTATGCTT
39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000161861.8
CDS-3UTR CAA 90 bp AAAGGTTCCATTTTCCACATTATTTTAGAACTTCAACAGAAGAATGGCTCTGCACATTCTGACTTTTTCTaGGGTCCAGGGAGATTGTTC +
Preference number: 5 (lower is better)
Translates to: KGSIFHIILELQQKNGSAHSDFF*GPGRLF
Trigger: GAACAATCTCCCTGGACCCAAGAAAAAGTCAGAATG...TGCAGAGCCATTCTTCTGTTGAAGTTCTAAAATAATGTGGAAAATGGAACCTTT
39% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 1 transcripts:
ENSMUST00000161861.8
CDS-3UTR CAA 90 bp AAAGGTTCCATTTTCCACATTATTTTAGAACTTCAACAGAAGAATGGCTCTGCACAGTCTTTACAAACCTaGTTCAATCTTCCACCATCA +
Preference number: 5 (lower is better)
Translates to: KGSIFHIILELQQKNGSAQSLQT*FNLPPS
Trigger: TGATGGTGGAAGATTGAACAAGGTTTGTAAAGACTG...TGCAGAGCCATTCTTCTGTTGAAGTTCTAAAATAATGTGGAAAATGGAACCTTT
37% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000161861.8
CDS-3UTR CAA 90 bp AAAGGTTCCATTTTCCACATTATTTTAGAACTTCAACAGAAGAATGGCTCTGCATTTTCTGCCAAGGCTTaGACTTTTCCATGTACTGAA +
Preference number: 5 (lower is better)
Translates to: KGSIFHIILELQQKNGSAFSAKA*TFPCTE
Trigger: TTCAGTACATGGAAAAGTCAAAGCCTTGGCAGAAAA...TGCAGAGCCATTCTTCTGTTGAAGTTCTAAAATAATGTGGAAAATGGAACCTTT
37% GC, longest homopolymer 4 nt, total homopolymer stretches 16 nt.
Matches the following 1 transcripts:
ENSMUST00000161861.8
CDS TCA 72 bp CAACGTAGCCCAGGAGGGGTATGGTCGCTTGGGCTCTaGCATCCTGAGGAGCGCCATACATGTACAGCACAA +
Preference number: 6 (lower is better)
Translates to: QRSPGGVWSLGL*HPEERHTCTAQ
Trigger: TTGTGCTGTACATGTATGGCGCTCCTCAGGATGTCAGAGCCCAAGCGACCATACCCCTCCTGGGCTACGTTG
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000069284.14
ENSMUST00000161861.8
ENSMUST00000162671.8
CDS TCA 72 bp GAGGATGCCTCACTTACATGTCCACATGCCCGGCAGTaGTGCCGCCTTCTGGTCAGTGCATTGAAGGACTCT +
Preference number: 6 (lower is better)
Translates to: EDASLTCPHARQ*CRLLVSALKDS
Trigger: AGAGTCCTTCAATGCACTGACCAGAAGGCGGCATCACTGCCGGGCATGTGGACATGTAAGTGAGGCATCCTC
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000161188.9
CDS CAA 72 bp ATCATCCACAACGTAGCCCAGGAGGGGTATGGTCGCTaGGGCTCTGACATCCTGAGGAGCGCCATACATGTA +
Preference number: 6 (lower is better)
Translates to: IIHNVAQEGYGR*GSDILRSAIHV
Trigger: TACATGTATGGCGCTCCTCAGGATGTCAGAGCCCAAGCGACCATACCCCTCCTGGGCTACGTTGTGGATGAT
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000069284.14
ENSMUST00000161861.8
ENSMUST00000162671.8
CDS CAA 90 bp CTTAGGCATATCATCCACAACGTAGCCCAGGAGGGGTATGGTCGCTaGGGCTCTGACATCCTGAGGAGCGCCATACATGTACAGCACAAG +
Preference number: 6 (lower is better)
Translates to: LRHIIHNVAQEGYGR*GSDILRSAIHVQHK
Trigger: CTTGTGCTGTACATGTATGGCGCTCCTCAGGATGTCAGAGCCCAAGCGACCATACCCCTCCTGGGCTACGTTGTGGATGATATGCCTAAG
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000069284.14
ENSMUST00000161861.8
ENSMUST00000162671.8
CDS CCA 72 bp ATTGGCCAAACAACCATGTTGCCCCTGAGTCTGATCTaGGTCGTTTTCCTGCTTCTGTGGAGAGTGCTGGGG +
Preference number: 6 (lower is better)
Translates to: IGQTTMLPLSLI*VVFLLLWRVLG
Trigger: CCCCAGCACTCTCCACAGAAGCAGGAAAACGACCCAGATCAGACTCAGGGGCAACATGGTTGTTTGGCCAAT
54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 5 transcripts:
ENSMUST00000069284.14
ENSMUST00000159542.8
ENSMUST00000161188.9
ENSMUST00000161861.8
ENSMUST00000162671.8
CDS TCA 72 bp CATTTCCAACAAACCACATGTCCACATGCCCGGCAGTaGTGCCGCCTTCTGGTCAGTGCATTGAAGGACTCT +
Preference number: 6 (lower is better)
Translates to: HFQQTTCPHARQ*CRLLVSALKDS
Trigger: AGAGTCCTTCAATGCACTGACCAGAAGGCGGCATCACTGCCGGGCATGTGGACATGTGGTTTGTTGGAAATG
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000069284.14
ENSMUST00000161861.8
ENSMUST00000162671.8
CDS GCA 72 bp TTCTTGGGTCCAGGGAGATTGTTCAAGGTGGCTAGATaGTCACTTGGGCCATCTGGTGTCTCACCTGTGACA +
Preference number: 6 (lower is better)
Translates to: FLGPGRLFKVAR*SLGPSGVSPVT
Trigger: TGTCACAGGTGAGACACCAGATGGCCCAAGTGAGCATCTAGCCACCTTGAACAATCTCCCTGGACCCAAGAA
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000161861.8
ENSMUST00000162671.8
CDS TCA 72 bp TTCAGCACATGTGTATCAGGAGAGGCGGCAGCAGTCTaGATAGCCATCTCTGGGCTAAGAGTAGTCTCCTTC +
Preference number: 6 (lower is better)
Translates to: FSTCVSGEAAAV*IAISGLRVVSF
Trigger: GAAGGAGACTACTCTTAGCCCAGAGATGGCTATTCAGACTGCTGCCGCCTCTCCTGATACACATGTGCTGAA
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000069284.14
ENSMUST00000159542.8
ENSMUST00000161188.9
ENSMUST00000161861.8
ENSMUST00000162671.8
CDS CCA 72 bp TCACTTCATGGTGCTGGTCCAACGTATCCAATCCCATaGTGTTCACCCCATTTTCCCTCTCTTGGAGCTCAG +
Preference number: 6 (lower is better)
Translates to: SLHGAGPTYPIP*CSPHFPSLGAQ
Trigger: CTGAGCTCCAAGAGAGGGAAAATGGGGTGAACACCATGGGATTGGATACGTTGGACCAGCACCATGAAGTGA
51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 5 transcripts:
ENSMUST00000069284.14
ENSMUST00000159542.8
ENSMUST00000161188.9
ENSMUST00000161861.8
ENSMUST00000162671.8
CDS GCA 72 bp CTTGGACTGGGTCAGCTTGAAACTATGTGGCAGATCTaGACTCTTAGGCATATCATCCACAACGTAGCCCAG +
Preference number: 6 (lower is better)
Translates to: LGLGQLETMWQI*TLRHIIHNVAQ
Trigger: CTGGGCTACGTTGTGGATGATATGCCTAAGAGTGCAGATCTGCCACATAGTTTCAAGCTGACCCAGTCCAAG
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000069284.14
ENSMUST00000161861.8
ENSMUST00000162671.8
CDS CCA 72 bp CACATTCCATCTGGTTTTGTGCAGCCACTACACCATTaGCCAAACAACCATGTTGCCCCTGAGTCTGATCTG +
Preference number: 6 (lower is better)
Translates to: HIPSGFVQPLHH*PNNHVAPESDL
Trigger: CAGATCAGACTCAGGGGCAACATGGTTGTTTGGCCAATGGTGTAGTGGCTGCACAAAACCAGATGGAATGTG
50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 5 transcripts:
ENSMUST00000069284.14
ENSMUST00000159542.8
ENSMUST00000161188.9
ENSMUST00000161861.8
ENSMUST00000162671.8
CDS CCA 72 bp ATCAGGAGAGGCGGCAGCAGTCTGAATAGCCATCTCTaGGCTAAGAGTAGTCTCCTTCTCATCTTCACATTC +
Preference number: 6 (lower is better)
Translates to: IRRGGSSLNSHL*AKSSLLLIFTF
Trigger: GAATGTGAAGATGAGAAGGAGACTACTCTTAGCCCAGAGATGGCTATTCAGACTGCTGCCGCCTCTCCTGAT
50% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000069284.14
ENSMUST00000159542.8
ENSMUST00000161188.9
ENSMUST00000161861.8
ENSMUST00000162671.8
CDS CAA 90 bp TGGGCTAAGAGTAGTCTCCTTCTCATCTTCACATTCCATCTGGTTTaGTGCAGCCACTACACCATTGGCCAAACAACCATGTTGCCCCTG +
Preference number: 6 (lower is better)
Translates to: WAKSSLLLIFTFHLV*CSHYTIGQTTMLPL
Trigger: CAGGGGCAACATGGTTGTTTGGCCAATGGTGTAGTGGCTGCACAAAACCAGATGGAATGTGAAGATGAGAAGGAGACTACTCTTAGCCCA
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000069284.14
ENSMUST00000159542.8
ENSMUST00000161188.9
ENSMUST00000161861.8
ENSMUST00000162671.8
CDS TCA 72 bp GCTGATGAGATCCGATACCTTACTATGCTTCCCTTTTaGGGTACAAGAAGTAGGGGCCGGATTAGACTCCTC +
Preference number: 6 (lower is better)
Translates to: ADEIRYLTMLPF*GTRSRGRIRLL
Trigger: GAGGAGTCTAATCCGGCCCCTACTTCTTGTACCTCAAAAGGGAAGCATAGTAAGGTATCGGATCTCATCAGC
49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 5 transcripts:
ENSMUST00000069284.14
ENSMUST00000159542.8
ENSMUST00000161188.9
ENSMUST00000161861.8
ENSMUST00000162671.8
CDS CAA 72 bp GCAGCAAAGCTATGCACAGACTTGGACTGGGTCAGCTaGAAACTATGTGGCAGATCTGCACTCTTAGGCATA +
Preference number: 6 (lower is better)
Translates to: AAKLCTDLDWVS*KLCGRSALLGI
Trigger: TATGCCTAAGAGTGCAGATCTGCCACATAGTTTCAAGCTGACCCAGTCCAAGTCTGTGCATAGCTTTGCTGC
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000069284.14
ENSMUST00000161861.8
ENSMUST00000162671.8
CDS CAA 90 bp TCATTGTCTGCAGCAAAGCTATGCACAGACTTGGACTGGGTCAGCTaGAAACTATGTGGCAGATCTGCACTCTTAGGCATATCATCCACA +
Preference number: 6 (lower is better)
Translates to: SLSAAKLCTDLDWVS*KLCGRSALLGISST
Trigger: TGTGGATGATATGCCTAAGAGTGCAGATCTGCCACATAGTTTCAAGCTGACCCAGTCCAAGTCTGTGCATAGCTTTGCTGCAGACAATGA
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000069284.14
ENSMUST00000161861.8
ENSMUST00000162671.8
CDS CCA 72 bp AGTTTCTGTTCATTAGTCTCCTTCACTTCATGGTGCTaGTCCAACGTATCCAATCCCATGGTGTTCACCCCA +
Preference number: 6 (lower is better)
Translates to: SFCSLVSFTSWC*SNVSNPMVFTP
Trigger: TGGGGTGAACACCATGGGATTGGATACGTTGGACCAGCACCATGAAGTGAAGGAGACTAATGAACAGAAACT
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000069284.14
ENSMUST00000159542.8
ENSMUST00000161188.9
ENSMUST00000161861.8
ENSMUST00000162671.8
CDS CAA 72 bp AGTTCCTCATTGTCTGCAGCAAAGCTATGCACAGACTaGGACTGGGTCAGCTTGAAACTATGTGGCAGATCT +
Preference number: 6 (lower is better)
Translates to: SSSLSAAKLCTD*DWVSLKLCGRS
Trigger: AGATCTGCCACATAGTTTCAAGCTGACCCAGTCCAAGTCTGTGCATAGCTTTGCTGCAGACAATGAGGAACT
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000069284.14
ENSMUST00000161861.8
ENSMUST00000162671.8
CDS TCA 72 bp GGAGGTGAGGAGGTTAACCCAGGCTGTCCTAGAGTTTaGGGAATATTGAGGTTCATAGTAGAATCTTTCTGC +
Preference number: 6 (lower is better)
Translates to: GGEEVNPGCPRV*GILRFIVESFC
Trigger: GCAGAAAGATTCTACTATGAACCTCAATATTCCTCAAACTCTAGGACAGCCTGGGTTAACCTCCTCACCTCC
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000069284.14
ENSMUST00000159542.8
ENSMUST00000161188.9
ENSMUST00000161861.8
ENSMUST00000162671.8
CDS TCA 72 bp GGAGTCCTGCAGCTGCTGTCAGAAGCATTTTCATCATaGCTATTGGCTATGGATGATGCAGAATCTGTGATG +
Preference number: 6 (lower is better)
Translates to: GVLQLLSEAFSS*LLAMDDAESVM
Trigger: CATCACAGATTCTGCATCATCCATAGCCAATAGTCATGATGAAAATGCTTCTGACAGCAGCTGCAGGACTCC
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000069284.14
ENSMUST00000159542.8
ENSMUST00000161188.9
ENSMUST00000161861.8
ENSMUST00000162671.8
CDS GCA 72 bp GATTTTCAGCCATTTCTGTTTCAGTTCCTCATTGTCTaGAGCAAAGCTATGCACAGACTTGGACTGGGTCAG +
Preference number: 6 (lower is better)
Translates to: DFQPFLFQFLIV*SKAMHRLGLGQ
Trigger: CTGACCCAGTCCAAGTCTGTGCATAGCTTTGCTGCAGACAATGAGGAACTGAAACAGAAATGGCTGAAAATC
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000069284.14
ENSMUST00000161861.8
ENSMUST00000162671.8
CDS CCA 72 bp CATACACATGGTCACTTCATTATCACGTATCCATCTTaGAGCTCGTTTTCCCAGCTCAGCAGTAGAAACTTC +
Preference number: 6 (lower is better)
Translates to: HTHGHFIITYPS*SSFSQLSSRNF
Trigger: GAAGTTTCTACTGCTGAGCTGGGAAAACGAGCTCCAAGATGGATACGTGATAATGAAGTGACCATGTGTATG
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000069284.14
ENSMUST00000161188.9
ENSMUST00000161861.8
ENSMUST00000162671.8
CDS GCA 72 bp GGGAACACGCTCTGTCATGGTTTTAACCAGTTCCACTaGATTATCAAATCCCTTCACGTATTCTCCATACAT +
Preference number: 6 (lower is better)
Translates to: GNTLCHGFNQFH*IIKSLHVFSIH
Trigger: ATGTATGGAGAATACGTGAAGGGATTTGATAATGCAGTGGAACTGGTTAAAACCATGACAGAGCGTGTTCCC
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000069284.14
ENSMUST00000159542.8
ENSMUST00000161188.9
ENSMUST00000161861.8
ENSMUST00000162671.8
CDS TCA 72 bp CATCATGACTATTGGCTATGGATGATGCAGAATCTGTaGTGGTTTCATTTCTTTCTCCATTCAGCACATGTG +
Preference number: 6 (lower is better)
Translates to: HHDYWLWMMQNL*WFHFFLHSAHV
Trigger: CACATGTGCTGAATGGAGAAAGAAATGAAACCATCACAGATTCTGCATCATCCATAGCCAATAGTCATGATG
40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000069284.14
ENSMUST00000159542.8
ENSMUST00000161188.9
ENSMUST00000161861.8
ENSMUST00000162671.8
CDS TCA 72 bp GTTCATAGTAGAATCTTTCTGCAAATCAATGTAACTTaGCAAAACACTGCCTCCTTCAAAGTGGCTGATGAG +
Preference number: 6 (lower is better)
Translates to: VHSRIFLQINVT*QNTASFKVADE
Trigger: CTCATCAGCCACTTTGAAGGAGGCAGTGTTTTGTCAAGTTACATTGATTTGCAGAAAGATTCTACTATGAAC
39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000069284.14
ENSMUST00000159542.8
ENSMUST00000161188.9
ENSMUST00000161861.8
ENSMUST00000162671.8
CDS TCA 72 bp CCAGATATCTGGAAAGTGTGTGGATATTCTTCATTGTaGGTCTCCACAATTTTCATTCCATCAATGCCAACT +
Preference number: 6 (lower is better)
Translates to: PDIWKVCGYSSL*VSTIFIPSMPT
Trigger: AGTTGGCATTGATGGAATGAAAATTGTGGAGACTCACAATGAAGAATATCCACACACTTTCCAGATATCTGG
39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000069284.14
ENSMUST00000161188.9
ENSMUST00000161861.8
ENSMUST00000162671.8
CDS CAA 72 bp TTCCTTTGCGATTGCATTTCTGAAAGTTTCATGCCTTaGATGAAAAGCATCAATACTTTCTTGAAGGGCCTT +
Preference number: 6 (lower is better)
Translates to: FLCDCISESFMP*MKSINTFLKGL
Trigger: AAGGCCCTTCAAGAAAGTATTGATGCTTTTCATCAAAGGCATGAAACTTTCAGAAATGCAATCGCAAAGGAA
38% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000069284.14
ENSMUST00000161188.9
ENSMUST00000161861.8
ENSMUST00000162671.8
CDS CAA 90 bp AATGTCATTTTCCTTTGCGATTGCATTTCTGAAAGTTTCATGCCTTaGATGAAAAGCATCAATACTTTCTTGAAGGGCCTTGATCCATTC +
Preference number: 6 (lower is better)
Translates to: NVIFLCDCISESFMP*MKSINTFLKGLDPF
Trigger: GAATGGATCAAGGCCCTTCAAGAAAGTATTGATGCTTTTCATCAAAGGCATGAAACTTTCAGAAATGCAATCGCAAAGGAAAATGACATT
37% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000069284.14
ENSMUST00000161188.9
ENSMUST00000161861.8
ENSMUST00000162671.8
CDS CAA 72 bp TTTTATTCACCATCTCTGCAGGAAATGAGCCTCGGTTaGCTTCTTCTAATAGTTTGCAATAAAATACCTGAT +
Preference number: 6 (lower is better)
Translates to: FYSPSLQEMSLG*LLLIVCNKIPD
Trigger: ATCAGGTATTTTATTGCAAACTATTAGAAGAAGCAAACCGAGGCTCATTTCCTGCAGAGATGGTGAATAAAA
36% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 5 transcripts:
ENSMUST00000069284.14
ENSMUST00000159542.8
ENSMUST00000161188.9
ENSMUST00000161861.8
ENSMUST00000162671.8