RADAR | Search for sensor designs | Human genes | Mouse genes | Code

Pregenerated sensors for FGD1 (Mus musculus)

Ensembl gene IDs: ENSMUSG00000025265

Ensembl transcript IDs: ENSMUST00000026296.8, ENSMUST00000112685.8

Found 254 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).

Type Sensor Details
3UTR CCA 90 bp GTGCCCTTGATGGGAATTCAAGTATTGACTGCATTGGGAGTGGGCTaGAGCCCCCAATTGAACATGGGCAGCTGGAGTGTGGGGCAGAAA +
Preference number: 1 (lower is better)
Translates to: VPLMGIQVLTALGVG*SPQLNMGSWSVGQK
Trigger: TTTCTGCCCCACACTCCAGCTGCCCATGTTCAATTGGGGGCTCCAGCCCACTCCCAATGCAGTCAATACTTGAATTCCCATCAAGGGCAC
54% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000026296.8
ENSMUST00000112685.8
3UTR CCA 90 bp CCGTCCTGCCCAGTGGCCCTGCCATGGATCTGGACGATAAAATACTaGATTGCTTTGGGGCTAGGTAGAAGCTATAAGCCATGGGAAAGG +
Preference number: 1 (lower is better)
Translates to: PSCPVALPWIWTIKY*IALGLGRSYKPWER
Trigger: CCTTTCCCATGGCTTATAGCTTCTACCTAGCCCCAAAGCAATCCAGTATTTTATCGTCCAGATCCATGGCAGGGCCACTGGGCAGGACGG
53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000026296.8
ENSMUST00000112685.8
3UTR GCA 90 bp GCATTCGGGATTGAAAGTGCCCTTGATGGGAATTCAAGTATTGACTaGATTGGGAGTGGGCTGGAGCCCCCAATTGAACATGGGCAGCTG +
Preference number: 1 (lower is better)
Translates to: AFGIESALDGNSSID*IGSGLEPPIEHGQL
Trigger: CAGCTGCCCATGTTCAATTGGGGGCTCCAGCCCACTCCCAATGCAGTCAATACTTGAATTCCCATCAAGGGCACTTTCAATCCCGAATGC
52% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000026296.8
ENSMUST00000112685.8
3UTR-3UTR CCA 90 bp CCCCCATTCCCGTCCTGCCCAGTGGCCCTGCCATGGATCTGGACGATAAAATACTTGTGGGGAGCTGGGTaGAAGTGGGGTACTGGGAGG +
Preference number: 2 (lower is better)
Translates to: PPFPSCPVALPWIWTIKYLWGAG*KWGTGR
Trigger: CCTCCCAGTACCCCACTTCCACCCAGCTCCCCACAA...GTATTTTATCGTCCAGATCCATGGCAGGGCCACTGGGCAGGACGGGAATGGGGG
60% GC, longest homopolymer 5 nt, total homopolymer stretches 17 nt.
Matches the following 2 transcripts:
ENSMUST00000026296.8
ENSMUST00000112685.8
3UTR-3UTR TCA 90 bp CCCCCATTCCCGTCCTGCCCAGTGGCCCTGCCATGGATCTGGACGATAAAATACAGCAGAGCTGGCACTTaGATCCAGGTCTCCTGCCTC +
Preference number: 2 (lower is better)
Translates to: PPFPSCPVALPWIWTIKYSRAGT*IQVSCL
Trigger: GAGGCAGGAGACCTGGATTCAAGTGCCAGCTCTGCT...GTATTTTATCGTCCAGATCCATGGCAGGGCCACTGGGCAGGACGGGAATGGGGG
59% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000026296.8
ENSMUST00000112685.8
3UTR-3UTR CCA 90 bp CCCCCATTCCCGTCCTGCCCAGTGGCCCTGCCATGGATCTGGACGATAAAATACTGGGCAGCTGGAGTGTaGGGCAGAAACTCCCAGTTC +
Preference number: 2 (lower is better)
Translates to: PPFPSCPVALPWIWTIKYWAAGV*GRNSQF
Trigger: GAACTGGGAGTTTCTGCCCCACACTCCAGCTGCCCA...GTATTTTATCGTCCAGATCCATGGCAGGGCCACTGGGCAGGACGGGAATGGGGG
59% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000026296.8
ENSMUST00000112685.8
3UTR-3UTR TCA 90 bp CCCCCATTCCCGTCCTGCCCAGTGGCCCTGCCATGGATCTGGACGATAAAATACTGTGAAGACACTGGCTaGGGAGGAAAGGGTGGGTTG +
Preference number: 2 (lower is better)
Translates to: PPFPSCPVALPWIWTIKYCEDTG*GGKGGL
Trigger: CAACCCACCCTTTCCTCCTCAGCCAGTGTCTTCACA...GTATTTTATCGTCCAGATCCATGGCAGGGCCACTGGGCAGGACGGGAATGGGGG
58% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000026296.8
ENSMUST00000112685.8
3UTR-3UTR CCA 90 bp CCCGTCCTGCCCAGTGGCCCTGCCATGGATCTGGACGATAAAATACTGGATTGCGCATTGGGAGTGGGCTaGAGCCCCCAATTGAACATG +
Preference number: 2 (lower is better)
Translates to: PVLPSGPAMDLDDKILDCALGVG*SPQLNM
Trigger: CATGTTCAATTGGGGGCTCCAGCCCACTCCCAATGC...GCAATCCAGTATTTTATCGTCCAGATCCATGGCAGGGCCACTGGGCAGGACGGG
57% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000026296.8
ENSMUST00000112685.8
3UTR-3UTR TCA 90 bp CCCCCATTCCCGTCCTGCCCAGTGGCCCTGCCATGGATCTGGACGATAAAATACGTAAGGTCATACATGTaGAGACACTGGCTGAGGAGG +
Preference number: 2 (lower is better)
Translates to: PPFPSCPVALPWIWTIKYVRSYM*RHWLRR
Trigger: CCTCCTCAGCCAGTGTCTTCACATGTATGACCTTAC...GTATTTTATCGTCCAGATCCATGGCAGGGCCACTGGGCAGGACGGGAATGGGGG
56% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000026296.8
ENSMUST00000112685.8
3UTR CAA 90 bp ACCCAGCATTCGGGATTGAAAGTGCCCTTGATGGGAATTCAAGTATaGACTGCATTGGGAGTGGGCTGGAGCCCCCAATTGAACATGGGC +
Preference number: 2 (lower is better)
Translates to: TQHSGLKVPLMGIQV*TALGVGWSPQLNMG
Trigger: GCCCATGTTCAATTGGGGGCTCCAGCCCACTCCCAATGCAGTCAATACTTGAATTCCCATCAAGGGCACTTTCAATCCCGAATGCTGGGT
52% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000026296.8
ENSMUST00000112685.8
3UTR-3UTR GCA 90 bp CCCGTCCTGCCCAGTGGCCCTGCCATGGATCTGGACGATAAAATACTGGATTGCAATTCAAGTATTGACTaGATTGGGAGTGGGCTGGAG +
Preference number: 2 (lower is better)
Translates to: PVLPSGPAMDLDDKILDCNSSID*IGSGLE
Trigger: CTCCAGCCCACTCCCAATGCAGTCAATACTTGAATT...GCAATCCAGTATTTTATCGTCCAGATCCATGGCAGGGCCACTGGGCAGGACGGG
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000026296.8
ENSMUST00000112685.8
3UTR-3UTR CCA 90 bp GACCCAGCATTCGGGATTGAAAGTGCCCTTGATGGGAATTCAAGTATTGACTGCTGGGCAGCTGGAGTGTaGGGCAGAAACTCCCAGTTC +
Preference number: 2 (lower is better)
Translates to: DPAFGIESALDGNSSIDCWAAGV*GRNSQF
Trigger: GAACTGGGAGTTTCTGCCCCACACTCCAGCTGCCCA...GCAGTCAATACTTGAATTCCCATCAAGGGCACTTTCAATCCCGAATGCTGGGTC
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000026296.8
ENSMUST00000112685.8
3UTR-3UTR CCA 90 bp CCCGTCCTGCCCAGTGGCCCTGCCATGGATCTGGACGATAAAATACTGGATTGCAGAAGCTATAAGCCATaGGAAAGGCAAGAAGGGTCT +
Preference number: 2 (lower is better)
Translates to: PVLPSGPAMDLDDKILDCRSYKP*ERQEGS
Trigger: AGACCCTTCTTGCCTTTCCCATGGCTTATAGCTTCT...GCAATCCAGTATTTTATCGTCCAGATCCATGGCAGGGCCACTGGGCAGGACGGG
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000026296.8
ENSMUST00000112685.8
3UTR CAA 90 bp CCAGTGGCCCTGCCATGGATCTGGACGATAAAATACTGGATTGCTTaGGGGCTAGGTAGAAGCTATAAGCCATGGGAAAGGCAAGAAGGG +
Preference number: 2 (lower is better)
Translates to: PVALPWIWTIKYWIA*GLGRSYKPWERQEG
Trigger: CCCTTCTTGCCTTTCCCATGGCTTATAGCTTCTACCTAGCCCCAAAGCAATCCAGTATTTTATCGTCCAGATCCATGGCAGGGCCACTGG
51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000026296.8
ENSMUST00000112685.8
3UTR-3UTR CCA 90 bp TGGATCTGGACGATAAAATACTGGATTGCTTTGGGGCTAGGTAGAAGCTATAAGCTGAGGAGGAAAGGGTaGGTTGGGGTCCCAGGGTCA +
Preference number: 2 (lower is better)
Translates to: WIWTIKYWIALGLGRSYKLRRKG*VGVPGS
Trigger: TGACCCTGGGACCCCAACCCACCCTTTCCTCCTCAG...CTTATAGCTTCTACCTAGCCCCAAAGCAATCCAGTATTTTATCGTCCAGATCCA
50% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 2 transcripts:
ENSMUST00000026296.8
ENSMUST00000112685.8
3UTR CCA 72 bp CCTCCCCCATTCCCGTCCTGCCCAGTGGCCCTGCCATaGATCTGGACGATAAAATACTGGATTGCTTTGGGG +
Preference number: 3 (lower is better)
Translates to: PPPFPSCPVALP*IWTIKYWIALG
Trigger: CCCCAAAGCAATCCAGTATTTTATCGTCCAGATCCATGGCAGGGCCACTGGGCAGGACGGGAATGGGGGAGG
58% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000026296.8
ENSMUST00000112685.8
3UTR-3UTR CAA 90 bp CCCGTCCTGCCCAGTGGCCCTGCCATGGATCTGGACGATAAAATACTGGATTGCACCCAGCATTCGGGATaGAAAGTGCCCTTGATGGGA +
Preference number: 3 (lower is better)
Translates to: PVLPSGPAMDLDDKILDCTQHSG*KVPLMG
Trigger: TCCCATCAAGGGCACTTTCAATCCCGAATGCTGGGT...GCAATCCAGTATTTTATCGTCCAGATCCATGGCAGGGCCACTGGGCAGGACGGG
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000026296.8
ENSMUST00000112685.8
3UTR CCA 72 bp CCATTCCCGTCCTGCCCAGTGGCCCTGCCATGGATCTaGACGATAAAATACTGGATTGCTTTGGGGCTAGGT +
Preference number: 3 (lower is better)
Translates to: PFPSCPVALPWI*TIKYWIALGLG
Trigger: ACCTAGCCCCAAAGCAATCCAGTATTTTATCGTCCAGATCCATGGCAGGGCCACTGGGCAGGACGGGAATGG
56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000026296.8
ENSMUST00000112685.8
3UTR CCA 72 bp CTGCCTCTGGTACTTTTGTGGGGAGCTGGGTGGAAGTaGGGTACTGGGAGGAAACTAATTCAAGTGAGTCTA +
Preference number: 3 (lower is better)
Translates to: LPLVLLWGAGWK*GTGRKLIQVSL
Trigger: TAGACTCACTTGAATTAGTTTCCTCCCAGTACCCCACTTCCACCCAGCTCCCCACAAAAGTACCAGAGGCAG
51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000026296.8
ENSMUST00000112685.8
3UTR CCA 72 bp TGGATTGCTTTGGGGCTAGGTAGAAGCTATAAGCCATaGGAAAGGCAAGAAGGGTCTAGTCACCACCCCATG +
Preference number: 3 (lower is better)
Translates to: WIALGLGRSYKP*ERQEGSSHHPM
Trigger: CATGGGGTGGTGACTAGACCCTTCTTGCCTTTCCCATGGCTTATAGCTTCTACCTAGCCCCAAAGCAATCCA
51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000026296.8
ENSMUST00000112685.8
CDS-3UTR TCA 90 bp CCCCCATTCCCGTCCTGCCCAGTGGCCCTGCCATGGATCTGGACGATAAAATACAGGGCCCGGTGGTGCTaGGGACTAGGGCCGCAGGGT +
Preference number: 4 (lower is better)
Translates to: PPFPSCPVALPWIWTIKYRARWC*GLGPQG
Trigger: ACCCTGCGGCCCTAGTCCTCAGCACCACCGGGCCCT...GTATTTTATCGTCCAGATCCATGGCAGGGCCACTGGGCAGGACGGGAATGGGGG
64% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000026296.8
CDS-3UTR GCA 90 bp CCCCCATTCCCGTCCTGCCCAGTGGCCCTGCCATGGATCTGGACGATAAAATACCCCCACGGCCCGCCCTaGCGAGAACAGCCATCCAGC +
Preference number: 4 (lower is better)
Translates to: PPFPSCPVALPWIWTIKYPHGPP*REQPSS
Trigger: GCTGGATGGCTGTTCTCGGCAGGGCGGGCCGTGGGG...GTATTTTATCGTCCAGATCCATGGCAGGGCCACTGGGCAGGACGGGAATGGGGG
64% GC, longest homopolymer 5 nt, total homopolymer stretches 14 nt.
Matches the following 2 transcripts:
ENSMUST00000026296.8
ENSMUST00000112685.8
CDS-3UTR GCA 90 bp CCCGTCCTGCCCAGTGGCCCTGCCATGGATCTGGACGATAAAATACTGGATTGCGGCCTCCAAGAGCCGTaGCTGAGCCCCTGCTCACCG +
Preference number: 4 (lower is better)
Translates to: PVLPSGPAMDLDDKILDCGLQEP*LSPCSP
Trigger: CGGTGAGCAGGGGCTCAGGCACGGCTCTTGGAGGCC...GCAATCCAGTATTTTATCGTCCAGATCCATGGCAGGGCCACTGGGCAGGACGGG
62% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000026296.8
CDS-3UTR CCA 90 bp CCCCCATTCCCGTCCTGCCCAGTGGCCCTGCCATGGATCTGGACGATAAAATACTCACCCTCAGGGAGCTaGGACCCTGTTGGCTGCGGG +
Preference number: 4 (lower is better)
Translates to: PPFPSCPVALPWIWTIKYSPSGS*DPVGCG
Trigger: CCCGCAGCCAACAGGGTCCCAGCTCCCTGAGGGTGA...GTATTTTATCGTCCAGATCCATGGCAGGGCCACTGGGCAGGACGGGAATGGGGG
62% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000026296.8
ENSMUST00000112685.8
CDS-3UTR TCA 90 bp GTGCCCTTGATGGGAATTCAAGTATTGACTGCATTGGGAGTGGGCTGGAGCCCCGGGAGGGCCTGGATCTaGGCGAAGCCGTTGGGGACC +
Preference number: 4 (lower is better)
Translates to: VPLMGIQVLTALGVGWSPGRAWI*AKPLGT
Trigger: GGTCCCCAACGGCTTCGCTCAGATCCAGGCCCTCCC...GGGGCTCCAGCCCACTCCCAATGCAGTCAATACTTGAATTCCCATCAAGGGCAC
61% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000026296.8
CDS-3UTR TCA 90 bp CCCCCATTCCCGTCCTGCCCAGTGGCCCTGCCATGGATCTGGACGATAAAATACTGCAGGCAGAGGGCGTaGTGGTGGTGGAGGAATGGG +
Preference number: 4 (lower is better)
Translates to: PPFPSCPVALPWIWTIKYCRQRA*WWWRNG
Trigger: CCCATTCCTCCACCACCATCACGCCCTCTGCCTGCA...GTATTTTATCGTCCAGATCCATGGCAGGGCCACTGGGCAGGACGGGAATGGGGG
61% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000026296.8
ENSMUST00000112685.8
CDS-3UTR TCA 90 bp CCCGTCCTGCCCAGTGGCCCTGCCATGGATCTGGACGATAAAATACTGGATTGCCCACCTCAAAGCCAATaGGGGGCAGGCTGCGCTGGG +
Preference number: 4 (lower is better)
Translates to: PVLPSGPAMDLDDKILDCPPQSQ*GAGCAG
Trigger: CCCAGCGCAGCCTGCCCCTCATTGGCTTTGAGGTGG...GCAATCCAGTATTTTATCGTCCAGATCCATGGCAGGGCCACTGGGCAGGACGGG
61% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000026296.8
ENSMUST00000112685.8
CDS-3UTR GCA 90 bp CAAGTATTGACTGCATTGGGAGTGGGCTGGAGCCCCCAATTGAACATGGGCAGCGTCTGGCCGCTCTCCTaGCTCAGGAGGCCCCACCTC +
Preference number: 4 (lower is better)
Translates to: QVLTALGVGWSPQLNMGSVWPLS*LRRPHL
Trigger: GAGGTGGGGCCTCCTGAGGCAGGAGAGCGGCCAGAC...GCTGCCCATGTTCAATTGGGGGCTCCAGCCCACTCCCAATGCAGTCAATACTTG
61% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000026296.8
ENSMUST00000112685.8
CDS-3UTR CCA 90 bp CCCCCATTCCCGTCCTGCCCAGTGGCCCTGCCATGGATCTGGACGATAAAATACGCAGGGGCCAGGGGCTaGCCTATCCGAGGCAACAAT +
Preference number: 4 (lower is better)
Translates to: PPFPSCPVALPWIWTIKYAGARG*PIRGNN
Trigger: ATTGTTGCCTCGGATAGGCCAGCCCCTGGCCCCTGC...GTATTTTATCGTCCAGATCCATGGCAGGGCCACTGGGCAGGACGGGAATGGGGG
61% GC, longest homopolymer 5 nt, total homopolymer stretches 17 nt.
Matches the following 2 transcripts:
ENSMUST00000026296.8
ENSMUST00000112685.8
CDS-3UTR CCA 90 bp CCATTCCCGTCCTGCCCAGTGGCCCTGCCATGGATCTGGACGATAAAATACTGGCTGCGGGGGTGGCTGTaGCAACATGGCTGGCTCTGG +
Preference number: 4 (lower is better)
Translates to: PFPSCPVALPWIWTIKYWLRGWL*QHGWLW
Trigger: CCAGAGCCAGCCATGTTGCCACAGCCACCCCCGCAG...CCAGTATTTTATCGTCCAGATCCATGGCAGGGCCACTGGGCAGGACGGGAATGG
61% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000026296.8
ENSMUST00000112685.8
CDS-3UTR CCA 90 bp CAAGTATTGACTGCATTGGGAGTGGGCTGGAGCCCCCAATTGAACATGGGCAGCGAGCTGGGACCCTGTTaGCTGCGGGGGTGGCTGTGG +
Preference number: 4 (lower is better)
Translates to: QVLTALGVGWSPQLNMGSELGPC*LRGWLW
Trigger: CCACAGCCACCCCCGCAGCCAACAGGGTCCCAGCTC...GCTGCCCATGTTCAATTGGGGGCTCCAGCCCACTCCCAATGCAGTCAATACTTG
61% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 2 transcripts:
ENSMUST00000026296.8
ENSMUST00000112685.8
CDS-3UTR TCA 90 bp CAAGTATTGACTGCATTGGGAGTGGGCTGGAGCCCCCAATTGAACATGGGCAGCCCACCTCAAAGCCAATaGGGGGCAGGCTGCGCTGGG +
Preference number: 4 (lower is better)
Translates to: QVLTALGVGWSPQLNMGSPPQSQ*GAGCAG
Trigger: CCCAGCGCAGCCTGCCCCTCATTGGCTTTGAGGTGG...GCTGCCCATGTTCAATTGGGGGCTCCAGCCCACTCCCAATGCAGTCAATACTTG
60% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 2 transcripts:
ENSMUST00000026296.8
ENSMUST00000112685.8
CDS-3UTR CCA 90 bp GTGCCCTTGATGGGAATTCAAGTATTGACTGCATTGGGAGTGGGCTGGAGCCCCCAACATGGCTGGCTCTaGGGGAACTGGGCAGGGGCC +
Preference number: 4 (lower is better)
Translates to: VPLMGIQVLTALGVGWSPQHGWL*GNWAGA
Trigger: GGCCCCTGCCCAGTTCCCCCAGAGCCAGCCATGTTG...GGGGCTCCAGCCCACTCCCAATGCAGTCAATACTTGAATTCCCATCAAGGGCAC
60% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 2 transcripts:
ENSMUST00000026296.8
ENSMUST00000112685.8
CDS-3UTR CCA 90 bp GTGCCCTTGATGGGAATTCAAGTATTGACTGCATTGGGAGTGGGCTGGAGCCCCTCACCCTCAGGGAGCTaGGACCCTGTTGGCTGCGGG +
Preference number: 4 (lower is better)
Translates to: VPLMGIQVLTALGVGWSPSPSGS*DPVGCG
Trigger: CCCGCAGCCAACAGGGTCCCAGCTCCCTGAGGGTGA...GGGGCTCCAGCCCACTCCCAATGCAGTCAATACTTGAATTCCCATCAAGGGCAC
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000026296.8
ENSMUST00000112685.8
CDS-3UTR CCA 90 bp CAAGTATTGACTGCATTGGGAGTGGGCTGGAGCCCCCAATTGAACATGGGCAGCTGGGAGCCAGGCCGGTaGGGGTCGGCCAAAGCTACT +
Preference number: 4 (lower is better)
Translates to: QVLTALGVGWSPQLNMGSWEPGR*GSAKAT
Trigger: AGTAGCTTTGGCCGACCCCCACCGGCCTGGCTCCCA...GCTGCCCATGTTCAATTGGGGGCTCCAGCCCACTCCCAATGCAGTCAATACTTG
60% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000026296.8
ENSMUST00000112685.8
CDS-3UTR CCA 90 bp CCCCCATTCCCGTCCTGCCCAGTGGCCCTGCCATGGATCTGGACGATAAAATACCAGGAGGTTCAGCAGTaGCTCCTGAGGCTGCCACTG +
Preference number: 4 (lower is better)
Translates to: PPFPSCPVALPWIWTIKYQEVQQ*LLRLPL
Trigger: CAGTGGCAGCCTCAGGAGCCACTGCTGAACCTCCTG...GTATTTTATCGTCCAGATCCATGGCAGGGCCACTGGGCAGGACGGGAATGGGGG
60% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000026296.8
ENSMUST00000112685.8
CDS-3UTR TCA 90 bp CCCCCATTCCCGTCCTGCCCAGTGGCCCTGCCATGGATCTGGACGATAAAATACCGGGCACAGAATACCTaGTCCAGGAGATGGAGCCTG +
Preference number: 4 (lower is better)
Translates to: PPFPSCPVALPWIWTIKYRAQNT*SRRWSL
Trigger: CAGGCTCCATCTCCTGGATCAGGTATTCTGTGCCCG...GTATTTTATCGTCCAGATCCATGGCAGGGCCACTGGGCAGGACGGGAATGGGGG
59% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000026296.8
ENSMUST00000112685.8
CDS-3UTR TCA 90 bp CCCGTCCTGCCCAGTGGCCCTGCCATGGATCTGGACGATAAAATACTGGATTGCCGCACGCTAAACTTCTaGCCAAGGAGCCGCAGCCTG +
Preference number: 4 (lower is better)
Translates to: PVLPSGPAMDLDDKILDCRTLNF*PRSRSL
Trigger: CAGGCTGCGGCTCCTTGGTCAGAAGTTTAGCGTGCG...GCAATCCAGTATTTTATCGTCCAGATCCATGGCAGGGCCACTGGGCAGGACGGG
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000026296.8
ENSMUST00000112685.8
CDS-3UTR CCA 90 bp GTGCCCTTGATGGGAATTCAAGTATTGACTGCATTGGGAGTGGGCTGGAGCCCCAGGATCCGGTTTCCCTaGTGCAGTCCAGGCCGAGGC +
Preference number: 4 (lower is better)
Translates to: VPLMGIQVLTALGVGWSPRIRFP*CSPGRG
Trigger: GCCTCGGCCTGGACTGCACCAGGGAAACCGGATCCT...GGGGCTCCAGCCCACTCCCAATGCAGTCAATACTTGAATTCCCATCAAGGGCAC
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000026296.8
CDS-3UTR CCA 90 bp GTGCCCTTGATGGGAATTCAAGTATTGACTGCATTGGGAGTGGGCTGGAGCCCCCAAGGAGCCGCAGCCTaGGCACGCAGTAAAGGAGGC +
Preference number: 4 (lower is better)
Translates to: VPLMGIQVLTALGVGWSPQGAAA*ARSKGG
Trigger: GCCTCCTTTACTGCGTGCCCAGGCTGCGGCTCCTTG...GGGGCTCCAGCCCACTCCCAATGCAGTCAATACTTGAATTCCCATCAAGGGCAC
59% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000026296.8
ENSMUST00000112685.8
CDS-3UTR TCA 90 bp TTGATGGGAATTCAAGTATTGACTGCATTGGGAGTGGGCTGGAGCCCCCAATTGTCCAAGAGCCGTGCCTaGGCCCCTGCTCACCGGCAG +
Preference number: 4 (lower is better)
Translates to: LMGIQVLTALGVGWSPQLSKSRA*APAHRQ
Trigger: CTGCCGGTGAGCAGGGGCTCAGGCACGGCTCTTGGA...CAATTGGGGGCTCCAGCCCACTCCCAATGCAGTCAATACTTGAATTCCCATCAA
58% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000026296.8
CDS-3UTR TCA 90 bp CCCCCATTCCCGTCCTGCCCAGTGGCCCTGCCATGGATCTGGACGATAAAATACTGTTGGATGGCGAGCTaGTGCTGTCAATGCCGCTGT +
Preference number: 4 (lower is better)
Translates to: PPFPSCPVALPWIWTIKYCWMAS*CCQCRC
Trigger: ACAGCGGCATTGACAGCATCAGCTCGCCATCCAACA...GTATTTTATCGTCCAGATCCATGGCAGGGCCACTGGGCAGGACGGGAATGGGGG
58% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000026296.8
ENSMUST00000112685.8
CDS-3UTR TCA 90 bp CCATTCCCGTCCTGCCCAGTGGCCCTGCCATGGATCTGGACGATAAAATACTGGGCTCTTTGGTGGGACTaGCAATGTCCTCCTCACCCC +
Preference number: 4 (lower is better)
Translates to: PFPSCPVALPWIWTIKYWALWWD*QCPPHP
Trigger: GGGGTGAGGAGGACATTGTCAGTCCCACCAAAGAGC...CCAGTATTTTATCGTCCAGATCCATGGCAGGGCCACTGGGCAGGACGGGAATGG
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000026296.8
ENSMUST00000112685.8
CDS-3UTR TCA 90 bp CCCGTCCTGCCCAGTGGCCCTGCCATGGATCTGGACGATAAAATACTGGATTGCGCTCTTTGGTGGGACTaGCAATGTCCTCCTCACCCC +
Preference number: 4 (lower is better)
Translates to: PVLPSGPAMDLDDKILDCALWWD*QCPPHP
Trigger: GGGGTGAGGAGGACATTGTCAGTCCCACCAAAGAGC...GCAATCCAGTATTTTATCGTCCAGATCCATGGCAGGGCCACTGGGCAGGACGGG
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000026296.8
ENSMUST00000112685.8
CDS-3UTR GCA 90 bp GTGCCCTTGATGGGAATTCAAGTATTGACTGCATTGGGAGTGGGCTGGAGCCCCCATGCCCACAGGCCTTaGAGTGGTGCCTGCGTTTGG +
Preference number: 4 (lower is better)
Translates to: VPLMGIQVLTALGVGWSPHAHRP*SGACVW
Trigger: CCAAACGCAGGCACCACTGCAAGGCCTGTGGGCATG...GGGGCTCCAGCCCACTCCCAATGCAGTCAATACTTGAATTCCCATCAAGGGCAC
58% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000026296.8
ENSMUST00000112685.8
CDS-3UTR GCA 90 bp CAAGTATTGACTGCATTGGGAGTGGGCTGGAGCCCCCAATTGAACATGGGCAGCCTAGGATGGACCTCCTaGGCTGGGGTGTATGCTGGC +
Preference number: 4 (lower is better)
Translates to: QVLTALGVGWSPQLNMGSLGWTS*AGVYAG
Trigger: GCCAGCATACACCCCAGCGCAGGAGGTCCATCCTAG...GCTGCCCATGTTCAATTGGGGGCTCCAGCCCACTCCCAATGCAGTCAATACTTG
58% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000026296.8
ENSMUST00000112685.8
CDS-3UTR GCA 90 bp GACCCAGCATTCGGGATTGAAAGTGCCCTTGATGGGAATTCAAGTATTGACTGCCCCCACGGCCCGCCCTaGCGAGAACAGCCATCCAGC +
Preference number: 4 (lower is better)
Translates to: DPAFGIESALDGNSSIDCPHGPP*REQPSS
Trigger: GCTGGATGGCTGTTCTCGGCAGGGCGGGCCGTGGGG...GCAGTCAATACTTGAATTCCCATCAAGGGCACTTTCAATCCCGAATGCTGGGTC
58% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000026296.8
ENSMUST00000112685.8
CDS-3UTR CCA 90 bp CAAGTATTGACTGCATTGGGAGTGGGCTGGAGCCCCCAATTGAACATGGGCAGCGGCCAGGGATTTCAGTaGGAGGGCCTGGATCTGAGC +
Preference number: 4 (lower is better)
Translates to: QVLTALGVGWSPQLNMGSGQGFQ*EGLDLS
Trigger: GCTCAGATCCAGGCCCTCCCACTGAAATCCCTGGCC...GCTGCCCATGTTCAATTGGGGGCTCCAGCCCACTCCCAATGCAGTCAATACTTG
58% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000026296.8
CDS-3UTR CCA 90 bp CCCCCATTCCCGTCCTGCCCAGTGGCCCTGCCATGGATCTGGACGATAAAATACATGGTGGTGGAGGAATaGGCTCAGGAGGAGGAAGCA +
Preference number: 4 (lower is better)
Translates to: PPFPSCPVALPWIWTIKYMVVEE*AQEEEA
Trigger: TGCTTCCTCCTCCTGAGCCCATTCCTCCACCACCAT...GTATTTTATCGTCCAGATCCATGGCAGGGCCACTGGGCAGGACGGGAATGGGGG
58% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000026296.8
ENSMUST00000112685.8
CDS-3UTR CCA 90 bp GAAAGTGCCCTTGATGGGAATTCAAGTATTGACTGCATTGGGAGTGGGCTGGAGGAGCTGGGACCCTGTTaGCTGCGGGGGTGGCTGTGG +
Preference number: 4 (lower is better)
Translates to: ESALDGNSSIDCIGSGLEELGPC*LRGWLW
Trigger: CCACAGCCACCCCCGCAGCCAACAGGGTCCCAGCTC...CTCCAGCCCACTCCCAATGCAGTCAATACTTGAATTCCCATCAAGGGCACTTTC
58% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000026296.8
ENSMUST00000112685.8
CDS-3UTR CCA 90 bp CAAGTATTGACTGCATTGGGAGTGGGCTGGAGCCCCCAATTGAACATGGGCAGCGTCGGCCAAAGCTACTaGCATACTAGCCAGGGCGGG +
Preference number: 4 (lower is better)
Translates to: QVLTALGVGWSPQLNMGSVGQSY*HTSQGG
Trigger: CCCGCCCTGGCTAGTATGCCAGTAGCTTTGGCCGAC...GCTGCCCATGTTCAATTGGGGGCTCCAGCCCACTCCCAATGCAGTCAATACTTG
58% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000026296.8
ENSMUST00000112685.8
CDS-3UTR CCA 90 bp CCATTCCCGTCCTGCCCAGTGGCCCTGCCATGGATCTGGACGATAAAATACTGGCCTGTTTCTCTAGGATaGACCTCCTGCGCTGGGGTG +
Preference number: 4 (lower is better)
Translates to: PFPSCPVALPWIWTIKYWPVSLG*TSCAGV
Trigger: CACCCCAGCGCAGGAGGTCCATCCTAGAGAAACAGG...CCAGTATTTTATCGTCCAGATCCATGGCAGGGCCACTGGGCAGGACGGGAATGG
58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000026296.8
ENSMUST00000112685.8
CDS-3UTR CCA 90 bp CAAGTATTGACTGCATTGGGAGTGGGCTGGAGCCCCCAATTGAACATGGGCAGCGCCATCCAGCGCCGCTaGAGTTCTTCTGTCTCTGGG +
Preference number: 4 (lower is better)
Translates to: QVLTALGVGWSPQLNMGSAIQRR*SSSVSG
Trigger: CCCAGAGACAGAAGAACTCCAGCGGCGCTGGATGGC...GCTGCCCATGTTCAATTGGGGGCTCCAGCCCACTCCCAATGCAGTCAATACTTG
58% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000026296.8
ENSMUST00000112685.8
CDS-3UTR GCA 90 bp GTGCCCTTGATGGGAATTCAAGTATTGACTGCATTGGGAGTGGGCTGGAGCCCCGCCGTGGACAACATCTaGGGGGAAGGAACTGCGGTT +
Preference number: 4 (lower is better)
Translates to: VPLMGIQVLTALGVGWSPAVDNI*GEGTAV
Trigger: AACCGCAGTTCCTTCCCCGCAGATGTTGTCCACGGC...GGGGCTCCAGCCCACTCCCAATGCAGTCAATACTTGAATTCCCATCAAGGGCAC
57% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000026296.8
ENSMUST00000112685.8
CDS-3UTR GCA 90 bp CCATTCCCGTCCTGCCCAGTGGCCCTGCCATGGATCTGGACGATAAAATACTGGTTCCCACAAACCACATaGCCACAGGCCTTGCAGTGG +
Preference number: 4 (lower is better)
Translates to: PFPSCPVALPWIWTIKYWFPQTT*PQALQW
Trigger: CCACTGCAAGGCCTGTGGGCATGTGGTTTGTGGGAA...CCAGTATTTTATCGTCCAGATCCATGGCAGGGCCACTGGGCAGGACGGGAATGG
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000026296.8
ENSMUST00000112685.8
CDS-3UTR CCA 90 bp CAAGTATTGACTGCATTGGGAGTGGGCTGGAGCCCCCAATTGAACATGGGCAGCCCGTTGGGGACCTTCTaGATGAGGCTCAAGGCTCTG +
Preference number: 4 (lower is better)
Translates to: QVLTALGVGWSPQLNMGSPLGTF*MRLKAL
Trigger: CAGAGCCTTGAGCCTCATCCAGAAGGTCCCCAACGG...GCTGCCCATGTTCAATTGGGGGCTCCAGCCCACTCCCAATGCAGTCAATACTTG
57% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000026296.8
CDS-3UTR CCA 90 bp TTGATGGGAATTCAAGTATTGACTGCATTGGGAGTGGGCTGGAGCCCCCAATTGGGGAACCTGTGGCTTTaGGCCCGGTGCCCGCTTCAG +
Preference number: 4 (lower is better)
Translates to: LMGIQVLTALGVGWSPQLGNLWL*ARCPLQ
Trigger: CTGAAGCGGGCACCGGGCCCAAAGCCACAGGTTCCC...CAATTGGGGGCTCCAGCCCACTCCCAATGCAGTCAATACTTGAATTCCCATCAA
57% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000026296.8
CDS-3UTR CCA 90 bp TTGATGGGAATTCAAGTATTGACTGCATTGGGAGTGGGCTGGAGCCCCCAATTGCTGCGGGGGTGGCTGTaGCAACATGGCTGGCTCTGG +
Preference number: 4 (lower is better)
Translates to: LMGIQVLTALGVGWSPQLLRGWL*QHGWLW
Trigger: CCAGAGCCAGCCATGTTGCCACAGCCACCCCCGCAG...CAATTGGGGGCTCCAGCCCACTCCCAATGCAGTCAATACTTGAATTCCCATCAA
57% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 2 transcripts:
ENSMUST00000026296.8
ENSMUST00000112685.8
CDS-3UTR CCA 90 bp TTGATGGGAATTCAAGTATTGACTGCATTGGGAGTGGGCTGGAGCCCCCAATTGTCACTGTCAACCTCCTaGGAGCCAGGCCGGTGGGGG +
Preference number: 4 (lower is better)
Translates to: LMGIQVLTALGVGWSPQLSLSTS*EPGRWG
Trigger: CCCCCACCGGCCTGGCTCCCAGGAGGTTGACAGTGA...CAATTGGGGGCTCCAGCCCACTCCCAATGCAGTCAATACTTGAATTCCCATCAA
57% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000026296.8
ENSMUST00000112685.8
CDS-3UTR CCA 90 bp GAAAGTGCCCTTGATGGGAATTCAAGTATTGACTGCATTGGGAGTGGGCTGGAGTCACTGTCAACCTCCTaGGAGCCAGGCCGGTGGGGG +
Preference number: 4 (lower is better)
Translates to: ESALDGNSSIDCIGSGLESLSTS*EPGRWG
Trigger: CCCCCACCGGCCTGGCTCCCAGGAGGTTGACAGTGA...CTCCAGCCCACTCCCAATGCAGTCAATACTTGAATTCCCATCAAGGGCACTTTC
57% GC, longest homopolymer 5 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000026296.8
ENSMUST00000112685.8
CDS-3UTR CCA 90 bp GTGCCCTTGATGGGAATTCAAGTATTGACTGCATTGGGAGTGGGCTGGAGCCCCCCTGTTTCTCTAGGATaGACCTCCTGCGCTGGGGTG +
Preference number: 4 (lower is better)
Translates to: VPLMGIQVLTALGVGWSPPVSLG*TSCAGV
Trigger: CACCCCAGCGCAGGAGGTCCATCCTAGAGAAACAGG...GGGGCTCCAGCCCACTCCCAATGCAGTCAATACTTGAATTCCCATCAAGGGCAC
57% GC, longest homopolymer 6 nt, total homopolymer stretches 10 nt.
Matches the following 2 transcripts:
ENSMUST00000026296.8
ENSMUST00000112685.8
CDS-3UTR CCA 90 bp CCATTCCCGTCCTGCCCAGTGGCCCTGCCATGGATCTGGACGATAAAATACTGGGTCTTGTCTCGGGTCTaGGAGGCTTCAGGAGGTTCA +
Preference number: 4 (lower is better)
Translates to: PFPSCPVALPWIWTIKYWVLSRV*EASGGS
Trigger: TGAACCTCCTGAAGCCTCCCAGACCCGAGACAAGAC...CCAGTATTTTATCGTCCAGATCCATGGCAGGGCCACTGGGCAGGACGGGAATGG
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000026296.8
ENSMUST00000112685.8
CDS-3UTR TCA 90 bp CCATTCCCGTCCTGCCCAGTGGCCCTGCCATGGATCTGGACGATAAAATACTGGAGGTCCGAGGCATGTTaGGGTTGGAGCTCTCCTTTA +
Preference number: 4 (lower is better)
Translates to: PFPSCPVALPWIWTIKYWRSEAC*GWSSPL
Trigger: TAAAGGAGAGCTCCAACCTCAACATGCCTCGGACCT...CCAGTATTTTATCGTCCAGATCCATGGCAGGGCCACTGGGCAGGACGGGAATGG
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000026296.8
ENSMUST00000112685.8
CDS-3UTR TCA 90 bp CAAGTATTGACTGCATTGGGAGTGGGCTGGAGCCCCCAATTGAACATGGGCAGCCTTCTGTCTCTGGGCTaGAGTACCAGCTTAGGTGGC +
Preference number: 4 (lower is better)
Translates to: QVLTALGVGWSPQLNMGSLLSLG*STSLGG
Trigger: GCCACCTAAGCTGGTACTTCAGCCCAGAGACAGAAG...GCTGCCCATGTTCAATTGGGGGCTCCAGCCCACTCCCAATGCAGTCAATACTTG
56% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000026296.8
ENSMUST00000112685.8
CDS-3UTR GCA 90 bp CAAGTATTGACTGCATTGGGAGTGGGCTGGAGCCCCCAATTGAACATGGGCAGCTGGACTGCTCCCAGGTaGTCCATGCAAGGCCACATA +
Preference number: 4 (lower is better)
Translates to: QVLTALGVGWSPQLNMGSWTAPR*SMQGHI
Trigger: TATGTGGCCTTGCATGGAGCACCTGGGAGCAGTCCA...GCTGCCCATGTTCAATTGGGGGCTCCAGCCCACTCCCAATGCAGTCAATACTTG
56% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000026296.8
ENSMUST00000112685.8
CDS-3UTR GCA 90 bp CCCCCATTCCCGTCCTGCCCAGTGGCCCTGCCATGGATCTGGACGATAAAATACACAAACCATGCCTTGTaGCATCCTTTCCCACCCTTC +
Preference number: 4 (lower is better)
Translates to: PPFPSCPVALPWIWTIKYTNHAL*HPFPPF
Trigger: GAAGGGTGGGAAAGGATGGCACAAGGCATGGTTTGT...GTATTTTATCGTCCAGATCCATGGCAGGGCCACTGGGCAGGACGGGAATGGGGG
56% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000026296.8
ENSMUST00000112685.8
CDS-3UTR GCA 90 bp CCATTCCCGTCCTGCCCAGTGGCCCTGCCATGGATCTGGACGATAAAATACTGGGTGATCTTGAAGACATaGCTCCTGTCTGGCCGCTCT +
Preference number: 4 (lower is better)
Translates to: PFPSCPVALPWIWTIKYWVILKT*LLSGRS
Trigger: AGAGCGGCCAGACAGGAGGCATGTCTTCAAGATCAC...CCAGTATTTTATCGTCCAGATCCATGGCAGGGCCACTGGGCAGGACGGGAATGG
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000026296.8
ENSMUST00000112685.8
CDS-3UTR CCA 90 bp TTGATGGGAATTCAAGTATTGACTGCATTGGGAGTGGGCTGGAGCCCCCAATTGGAGGCGCTCCCAGGCTaGCATCCGAGGGTCCAACAA +
Preference number: 4 (lower is better)
Translates to: LMGIQVLTALGVGWSPQLEALPG*HPRVQQ
Trigger: TTGTTGGACCCTCGGATGCCAGCCTGGGAGCGCCTC...CAATTGGGGGCTCCAGCCCACTCCCAATGCAGTCAATACTTGAATTCCCATCAA
56% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000026296.8
CDS-3UTR CCA 90 bp TTGAAAGTGCCCTTGATGGGAATTCAAGTATTGACTGCATTGGGAGTGGGCTGGCTTTGGGGGAACCTGTaGCTTTGGGCCCGGTGCCCG +
Preference number: 4 (lower is better)
Translates to: LKVPLMGIQVLTALGVGWLWGNL*LWARCP
Trigger: CGGGCACCGGGCCCAAAGCCACAGGTTCCCCCAAAG...CCAGCCCACTCCCAATGCAGTCAATACTTGAATTCCCATCAAGGGCACTTTCAA
56% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000026296.8
CDS-3UTR CCA 90 bp GAAAGTGCCCTTGATGGGAATTCAAGTATTGACTGCATTGGGAGTGGGCTGGAGGCAGGGGCCAGGGGCTaGCCTATCCGAGGCAACAAT +
Preference number: 4 (lower is better)
Translates to: ESALDGNSSIDCIGSGLEAGARG*PIRGNN
Trigger: ATTGTTGCCTCGGATAGGCCAGCCCCTGGCCCCTGC...CTCCAGCCCACTCCCAATGCAGTCAATACTTGAATTCCCATCAAGGGCACTTTC
56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000026296.8
ENSMUST00000112685.8
CDS-3UTR CCA 90 bp TTGAAAGTGCCCTTGATGGGAATTCAAGTATTGACTGCATTGGGAGTGGGCTGGCAACATGGCTGGCTCTaGGGGAACTGGGCAGGGGCC +
Preference number: 4 (lower is better)
Translates to: LKVPLMGIQVLTALGVGWQHGWL*GNWAGA
Trigger: GGCCCCTGCCCAGTTCCCCCAGAGCCAGCCATGTTG...CCAGCCCACTCCCAATGCAGTCAATACTTGAATTCCCATCAAGGGCACTTTCAA
56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000026296.8
ENSMUST00000112685.8
CDS-3UTR CCA 90 bp CCATTCCCGTCCTGCCCAGTGGCCCTGCCATGGATCTGGACGATAAAATACTGGCCAGGAGATGGAGCCTaGAAACATAGGCCTTCTCAG +
Preference number: 4 (lower is better)
Translates to: PFPSCPVALPWIWTIKYWPGDGA*KHRPSQ
Trigger: CTGAGAAGGCCTATGTTTCCAGGCTCCATCTCCTGG...CCAGTATTTTATCGTCCAGATCCATGGCAGGGCCACTGGGCAGGACGGGAATGG
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000026296.8
ENSMUST00000112685.8
CDS-3UTR CCA 90 bp CCCCCATTCCCGTCCTGCCCAGTGGCCCTGCCATGGATCTGGACGATAAAATACTTAGAGAAGATGCCGTaGACAACATCTGCGGGGAAG +
Preference number: 4 (lower is better)
Translates to: PPFPSCPVALPWIWTIKYLEKMP*TTSAGK
Trigger: CTTCCCCGCAGATGTTGTCCACGGCATCTTCTCTAA...GTATTTTATCGTCCAGATCCATGGCAGGGCCACTGGGCAGGACGGGAATGGGGG
56% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 2 transcripts:
ENSMUST00000026296.8
ENSMUST00000112685.8
CDS-3UTR CCA 90 bp GTGCCCTTGATGGGAATTCAAGTATTGACTGCATTGGGAGTGGGCTGGAGCCCCAGCTCCAAAGACTTCTaGGCATCCTTGCTGTCCGGG +
Preference number: 4 (lower is better)
Translates to: VPLMGIQVLTALGVGWSPSSKDF*ASLLSG
Trigger: CCCGGACAGCAAGGATGCCCAGAAGTCTTTGGAGCT...GGGGCTCCAGCCCACTCCCAATGCAGTCAATACTTGAATTCCCATCAAGGGCAC
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000026296.8
ENSMUST00000112685.8
CDS-3UTR CCA 90 bp GTGCCCTTGATGGGAATTCAAGTATTGACTGCATTGGGAGTGGGCTGGAGCCCCTGTCCTCAGACAGTGTaGGCCCTGGGCAGAATGTGT +
Preference number: 4 (lower is better)
Translates to: VPLMGIQVLTALGVGWSPCPQTV*ALGRMC
Trigger: ACACATTCTGCCCAGGGCCCACACTGTCTGAGGACA...GGGGCTCCAGCCCACTCCCAATGCAGTCAATACTTGAATTCCCATCAAGGGCAC
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000026296.8
ENSMUST00000112685.8
CDS-3UTR TCA 90 bp GACCCAGCATTCGGGATTGAAAGTGCCCTTGATGGGAATTCAAGTATTGACTGCTGCCCGCTTCAGTGGTaGAGGACGTGGGCCAGGGAT +
Preference number: 4 (lower is better)
Translates to: DPAFGIESALDGNSSIDCCPLQW*RTWARD
Trigger: ATCCCTGGCCCACGTCCTTCACCACTGAAGCGGGCA...GCAGTCAATACTTGAATTCCCATCAAGGGCACTTTCAATCCCGAATGCTGGGTC
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000026296.8
CDS-3UTR TCA 90 bp GACCCAGCATTCGGGATTGAAAGTGCCCTTGATGGGAATTCAAGTATTGACTGCTGCAGGCAGAGGGCGTaGTGGTGGTGGAGGAATGGG +
Preference number: 4 (lower is better)
Translates to: DPAFGIESALDGNSSIDCCRQRA*WWWRNG
Trigger: CCCATTCCTCCACCACCATCACGCCCTCTGCCTGCA...GCAGTCAATACTTGAATTCCCATCAAGGGCACTTTCAATCCCGAATGCTGGGTC
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000026296.8
ENSMUST00000112685.8
CDS-3UTR TCA 90 bp CCCCCATTCCCGTCCTGCCCAGTGGCCCTGCCATGGATCTGGACGATAAAATACAAGGGTGCCAACTTCTaGAGAATGTCACCAATGCGT +
Preference number: 4 (lower is better)
Translates to: PPFPSCPVALPWIWTIKYKGANF*RMSPMR
Trigger: ACGCATTGGTGACATTCTTCAGAAGTTGGCACCCTT...GTATTTTATCGTCCAGATCCATGGCAGGGCCACTGGGCAGGACGGGAATGGGGG
54% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000026296.8
ENSMUST00000112685.8
CDS-3UTR TCA 90 bp GAAAGTGCCCTTGATGGGAATTCAAGTATTGACTGCATTGGGAGTGGGCTGGAGTTCAGCAGTGGCTCCTaGGGCTGCCACTGGTGTCTC +
Preference number: 4 (lower is better)
Translates to: ESALDGNSSIDCIGSGLEFSSGS*GCHWCL
Trigger: GAGACACCAGTGGCAGCCTCAGGAGCCACTGCTGAA...CTCCAGCCCACTCCCAATGCAGTCAATACTTGAATTCCCATCAAGGGCACTTTC
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000026296.8
ENSMUST00000112685.8
CDS-3UTR GCA 90 bp CCCGTCCTGCCCAGTGGCCCTGCCATGGATCTGGACGATAAAATACTGGATTGCTCCAGGGTCTGTTCATaGTTCAGGAGGGTGGAATTG +
Preference number: 4 (lower is better)
Translates to: PVLPSGPAMDLDDKILDCSRVCS*FRRVEL
Trigger: CAATTCCACCCTCCTGAAGCATGAACAGACCCTGGA...GCAATCCAGTATTTTATCGTCCAGATCCATGGCAGGGCCACTGGGCAGGACGGG
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000026296.8
ENSMUST00000112685.8
CDS-3UTR GCA 90 bp GAAAGTGCCCTTGATGGGAATTCAAGTATTGACTGCATTGGGAGTGGGCTGGAGCTAGGATGGACCTCCTaGGCTGGGGTGTATGCTGGC +
Preference number: 4 (lower is better)
Translates to: ESALDGNSSIDCIGSGLELGWTS*AGVYAG
Trigger: GCCAGCATACACCCCAGCGCAGGAGGTCCATCCTAG...CTCCAGCCCACTCCCAATGCAGTCAATACTTGAATTCCCATCAAGGGCACTTTC
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000026296.8
ENSMUST00000112685.8
CDS-3UTR CCA 90 bp TTGATGGGAATTCAAGTATTGACTGCATTGGGAGTGGGCTGGAGCCCCCAATTGCTGTGGCAACATGGCTaGCTCTGGGGGAACTGGGCA +
Preference number: 4 (lower is better)
Translates to: LMGIQVLTALGVGWSPQLLWQHG*LWGNWA
Trigger: TGCCCAGTTCCCCCAGAGCCAGCCATGTTGCCACAG...CAATTGGGGGCTCCAGCCCACTCCCAATGCAGTCAATACTTGAATTCCCATCAA
54% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 2 transcripts:
ENSMUST00000026296.8
ENSMUST00000112685.8
CDS-3UTR CCA 90 bp GACCCAGCATTCGGGATTGAAAGTGCCCTTGATGGGAATTCAAGTATTGACTGCTGTTGGCTGCGGGGGTaGCTGTGGCAACATGGCTGG +
Preference number: 4 (lower is better)
Translates to: DPAFGIESALDGNSSIDCCWLRG*LWQHGW
Trigger: CCAGCCATGTTGCCACAGCCACCCCCGCAGCCAACA...GCAGTCAATACTTGAATTCCCATCAAGGGCACTTTCAATCCCGAATGCTGGGTC
54% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000026296.8
ENSMUST00000112685.8
CDS-3UTR CCA 90 bp TTGATGGGAATTCAAGTATTGACTGCATTGGGAGTGGGCTGGAGCCCCCAATTGGTCGGCCAAAGCTACTaGCATACTAGCCAGGGCGGG +
Preference number: 4 (lower is better)
Translates to: LMGIQVLTALGVGWSPQLVGQSY*HTSQGG
Trigger: CCCGCCCTGGCTAGTATGCCAGTAGCTTTGGCCGAC...CAATTGGGGGCTCCAGCCCACTCCCAATGCAGTCAATACTTGAATTCCCATCAA
54% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000026296.8
ENSMUST00000112685.8
CDS-3UTR CCA 90 bp CCCCCATTCCCGTCCTGCCCAGTGGCCCTGCCATGGATCTGGACGATAAAATACCTCCATCGGGGGCACTaGAATTTCTCTTTCCTTTTC +
Preference number: 4 (lower is better)
Translates to: PPFPSCPVALPWIWTIKYLHRGH*NFSFLF
Trigger: GAAAAGGAAAGAGAAATTCCAGTGCCCCCGATGGAG...GTATTTTATCGTCCAGATCCATGGCAGGGCCACTGGGCAGGACGGGAATGGGGG
54% GC, longest homopolymer 5 nt, total homopolymer stretches 18 nt.
Matches the following 2 transcripts:
ENSMUST00000026296.8
ENSMUST00000112685.8
CDS-3UTR CCA 90 bp CCATTCCCGTCCTGCCCAGTGGCCCTGCCATGGATCTGGACGATAAAATACTGGTTAGAGAAGATGCCGTaGACAACATCTGCGGGGAAG +
Preference number: 4 (lower is better)
Translates to: PFPSCPVALPWIWTIKYWLEKMP*TTSAGK
Trigger: CTTCCCCGCAGATGTTGTCCACGGCATCTTCTCTAA...CCAGTATTTTATCGTCCAGATCCATGGCAGGGCCACTGGGCAGGACGGGAATGG
54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000026296.8
ENSMUST00000112685.8
CDS-3UTR CCA 90 bp CCCGTCCTGCCCAGTGGCCCTGCCATGGATCTGGACGATAAAATACTGGATTGCGTGGAATTGATGGCCTaGACCCAGTCTTTCTTCTCC +
Preference number: 4 (lower is better)
Translates to: PVLPSGPAMDLDDKILDCVELMA*TQSFFS
Trigger: GGAGAAGAAAGACTGGGTCCAGGCCATCAATTCCAC...GCAATCCAGTATTTTATCGTCCAGATCCATGGCAGGGCCACTGGGCAGGACGGG
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000026296.8
ENSMUST00000112685.8
CDS-3UTR CCA 90 bp CCATTCCCGTCCTGCCCAGTGGCCCTGCCATGGATCTGGACGATAAAATACTGGGTGGAATTGATGGCCTaGACCCAGTCTTTCTTCTCC +
Preference number: 4 (lower is better)
Translates to: PFPSCPVALPWIWTIKYWVELMA*TQSFFS
Trigger: GGAGAAGAAAGACTGGGTCCAGGCCATCAATTCCAC...CCAGTATTTTATCGTCCAGATCCATGGCAGGGCCACTGGGCAGGACGGGAATGG
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000026296.8
ENSMUST00000112685.8
CDS-3UTR CCA 90 bp TTGATGGGAATTCAAGTATTGACTGCATTGGGAGTGGGCTGGAGCCCCCAATTGGCCATCCAGCGCCGCTaGAGTTCTTCTGTCTCTGGG +
Preference number: 4 (lower is better)
Translates to: LMGIQVLTALGVGWSPQLAIQRR*SSSVSG
Trigger: CCCAGAGACAGAAGAACTCCAGCGGCGCTGGATGGC...CAATTGGGGGCTCCAGCCCACTCCCAATGCAGTCAATACTTGAATTCCCATCAA
54% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000026296.8
ENSMUST00000112685.8
CDS-3UTR CCA 90 bp GAAAGTGCCCTTGATGGGAATTCAAGTATTGACTGCATTGGGAGTGGGCTGGAGAGACAGTGTGGGCCCTaGGCAGAATGTGTCCCCACG +
Preference number: 4 (lower is better)
Translates to: ESALDGNSSIDCIGSGLERQCGP*AECVPT
Trigger: CGTGGGGACACATTCTGCCCAGGGCCCACACTGTCT...CTCCAGCCCACTCCCAATGCAGTCAATACTTGAATTCCCATCAAGGGCACTTTC
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000026296.8
ENSMUST00000112685.8
CDS-3UTR CCA 90 bp TTGATGGGAATTCAAGTATTGACTGCATTGGGAGTGGGCTGGAGCCCCCAATTGCAGGAGGTTCAGCAGTaGCTCCTGAGGCTGCCACTG +
Preference number: 4 (lower is better)
Translates to: LMGIQVLTALGVGWSPQLQEVQQ*LLRLPL
Trigger: CAGTGGCAGCCTCAGGAGCCACTGCTGAACCTCCTG...CAATTGGGGGCTCCAGCCCACTCCCAATGCAGTCAATACTTGAATTCCCATCAA
54% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000026296.8
ENSMUST00000112685.8
CDS-3UTR TCA 90 bp GAAAGTGCCCTTGATGGGAATTCAAGTATTGACTGCATTGGGAGTGGGCTGGAGGGGGCCCATCATCACTaGCGAAGCAGGTCTCTTCAC +
Preference number: 4 (lower is better)
Translates to: ESALDGNSSIDCIGSGLEGAHHH*RSRSLH
Trigger: GTGAAGAGACCTGCTTCGTCAGTGATGATGGGCCCC...CTCCAGCCCACTCCCAATGCAGTCAATACTTGAATTCCCATCAAGGGCACTTTC
53% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000026296.8
ENSMUST00000112685.8
CDS-3UTR TCA 90 bp CCATTCCCGTCCTGCCCAGTGGCCCTGCCATGGATCTGGACGATAAAATACTGGAAGGGTGCCAACTTCTaGAGAATGTCACCAATGCGT +
Preference number: 4 (lower is better)
Translates to: PFPSCPVALPWIWTIKYWKGANF*RMSPMR
Trigger: ACGCATTGGTGACATTCTTCAGAAGTTGGCACCCTT...CCAGTATTTTATCGTCCAGATCCATGGCAGGGCCACTGGGCAGGACGGGAATGG
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000026296.8
ENSMUST00000112685.8
CDS-3UTR TCA 90 bp GACCCAGCATTCGGGATTGAAAGTGCCCTTGATGGGAATTCAAGTATTGACTGCCGCACGCTAAACTTCTaGCCAAGGAGCCGCAGCCTG +
Preference number: 4 (lower is better)
Translates to: DPAFGIESALDGNSSIDCRTLNF*PRSRSL
Trigger: CAGGCTGCGGCTCCTTGGTCAGAAGTTTAGCGTGCG...GCAGTCAATACTTGAATTCCCATCAAGGGCACTTTCAATCCCGAATGCTGGGTC
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000026296.8
ENSMUST00000112685.8
CDS-3UTR TCA 90 bp TTGATGGGAATTCAAGTATTGACTGCATTGGGAGTGGGCTGGAGCCCCCAATTGGCAGGAAGCTGCAGATaGCGCTGTTCTCAGCAGCGA +
Preference number: 4 (lower is better)
Translates to: LMGIQVLTALGVGWSPQLAGSCR*RCSQQR
Trigger: TCGCTGCTGAGAACAGCGTCATCTGCAGCTTCCTGC...CAATTGGGGGCTCCAGCCCACTCCCAATGCAGTCAATACTTGAATTCCCATCAA
53% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000026296.8
ENSMUST00000112685.8
CDS-3UTR GCA 90 bp GAAAGTGCCCTTGATGGGAATTCAAGTATTGACTGCATTGGGAGTGGGCTGGAGCTGCGGGGAAGGAACTaGGGTTCCGAGCTTCTTCCA +
Preference number: 4 (lower is better)
Translates to: ESALDGNSSIDCIGSGLELRGRN*GSELLP
Trigger: TGGAAGAAGCTCGGAACCGCAGTTCCTTCCCCGCAG...CTCCAGCCCACTCCCAATGCAGTCAATACTTGAATTCCCATCAAGGGCACTTTC
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000026296.8
ENSMUST00000112685.8
CDS-3UTR GCA 90 bp GAAAGTGCCCTTGATGGGAATTCAAGTATTGACTGCATTGGGAGTGGGCTGGAGGCCGTGGACAACATCTaGGGGGAAGGAACTGCGGTT +
Preference number: 4 (lower is better)
Translates to: ESALDGNSSIDCIGSGLEAVDNI*GEGTAV
Trigger: AACCGCAGTTCCTTCCCCGCAGATGTTGTCCACGGC...CTCCAGCCCACTCCCAATGCAGTCAATACTTGAATTCCCATCAAGGGCACTTTC
53% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000026296.8
ENSMUST00000112685.8
CDS-3UTR GCA 90 bp GAAAGTGCCCTTGATGGGAATTCAAGTATTGACTGCATTGGGAGTGGGCTGGAGACTTCTGGGCATCCTTaGTGTCCGGGGAGCCATGAG +
Preference number: 4 (lower is better)
Translates to: ESALDGNSSIDCIGSGLETSGHP*CPGSHE
Trigger: CTCATGGCTCCCCGGACAGCAAGGATGCCCAGAAGT...CTCCAGCCCACTCCCAATGCAGTCAATACTTGAATTCCCATCAAGGGCACTTTC
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000026296.8
ENSMUST00000112685.8
CDS-3UTR GCA 90 bp TTGATGGGAATTCAAGTATTGACTGCATTGGGAGTGGGCTGGAGCCCCCAATTGACTTCTGGGCATCCTTaGTGTCCGGGGAGCCATGAG +
Preference number: 4 (lower is better)
Translates to: LMGIQVLTALGVGWSPQLTSGHP*CPGSHE
Trigger: CTCATGGCTCCCCGGACAGCAAGGATGCCCAGAAGT...CAATTGGGGGCTCCAGCCCACTCCCAATGCAGTCAATACTTGAATTCCCATCAA
53% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000026296.8
ENSMUST00000112685.8
CDS-3UTR GCA 90 bp CCCGTCCTGCCCAGTGGCCCTGCCATGGATCTGGACGATAAAATACTGGATTGCACCTTCAGCAGCTTGTaGATTCGTTCCATTTTCCGG +
Preference number: 4 (lower is better)
Translates to: PVLPSGPAMDLDDKILDCTFSSL*IRSIFR
Trigger: CCGGAAAATGGAACGAATGCACAAGCTGCTGAAGGT...GCAATCCAGTATTTTATCGTCCAGATCCATGGCAGGGCCACTGGGCAGGACGGG
53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000026296.8
ENSMUST00000112685.8
CDS-3UTR GCA 90 bp CCATTCCCGTCCTGCCCAGTGGCCCTGCCATGGATCTGGACGATAAAATACTGGATCTACATCAATGCGTaGCCGCACGCTAAACTTCTG +
Preference number: 4 (lower is better)
Translates to: PFPSCPVALPWIWTIKYWIYINA*PHAKLL
Trigger: CAGAAGTTTAGCGTGCGGGCACGCATTGATGTAGAT...CCAGTATTTTATCGTCCAGATCCATGGCAGGGCCACTGGGCAGGACGGGAATGG
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000026296.8
ENSMUST00000112685.8
CDS-3UTR GCA 90 bp TTGATGGGAATTCAAGTATTGACTGCATTGGGAGTGGGCTGGAGCCCCCAATTGCCGGATAGGCGTAGGTaGCCTCTTCCCAAGATCCAC +
Preference number: 4 (lower is better)
Translates to: LMGIQVLTALGVGWSPQLPDRRR*PLPKIH
Trigger: GTGGATCTTGGGAAGAGGGCACCTACGCCTATCCGG...CAATTGGGGGCTCCAGCCCACTCCCAATGCAGTCAATACTTGAATTCCCATCAA
53% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000026296.8
ENSMUST00000112685.8
CDS-3UTR GCA 90 bp GACCCAGCATTCGGGATTGAAAGTGCCCTTGATGGGAATTCAAGTATTGACTGCCATGCCCACAGGCCTTaGAGTGGTGCCTGCGTTTGG +
Preference number: 4 (lower is better)
Translates to: DPAFGIESALDGNSSIDCHAHRP*SGACVW
Trigger: CCAAACGCAGGCACCACTGCAAGGCCTGTGGGCATG...GCAGTCAATACTTGAATTCCCATCAAGGGCACTTTCAATCCCGAATGCTGGGTC
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000026296.8
ENSMUST00000112685.8
CDS-3UTR GCA 90 bp CCCGTCCTGCCCAGTGGCCCTGCCATGGATCTGGACGATAAAATACTGGATTGCCCACATAGCAATCAGTaGACACACGGTTGGAACGAT +
Preference number: 4 (lower is better)
Translates to: PVLPSGPAMDLDDKILDCPHSNQ*THGWND
Trigger: ATCGTTCCAACCGTGTGTGCACTGATTGCTATGTGG...GCAATCCAGTATTTTATCGTCCAGATCCATGGCAGGGCCACTGGGCAGGACGGG
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000026296.8
ENSMUST00000112685.8
CDS-3UTR GCA 90 bp TTGAAAGTGCCCTTGATGGGAATTCAAGTATTGACTGCATTGGGAGTGGGCTGGGGCTACAGGCTGGACTaGTCCCAGGTGCTCCATGCA +
Preference number: 4 (lower is better)
Translates to: LKVPLMGIQVLTALGVGWGYRLD*SQVLHA
Trigger: TGCATGGAGCACCTGGGAGCAGTCCAGCCTGTAGCC...CCAGCCCACTCCCAATGCAGTCAATACTTGAATTCCCATCAAGGGCACTTTCAA
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000026296.8
ENSMUST00000112685.8
CDS-3UTR GCA 90 bp GTGCCCTTGATGGGAATTCAAGTATTGACTGCATTGGGAGTGGGCTGGAGCCCCACAAACCATGCCTTGTaGCATCCTTTCCCACCCTTC +
Preference number: 4 (lower is better)
Translates to: VPLMGIQVLTALGVGWSPTNHAL*HPFPPF
Trigger: GAAGGGTGGGAAAGGATGGCACAAGGCATGGTTTGT...GGGGCTCCAGCCCACTCCCAATGCAGTCAATACTTGAATTCCCATCAAGGGCAC
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000026296.8
ENSMUST00000112685.8
CDS-3UTR GCA 90 bp GTGCCCTTGATGGGAATTCAAGTATTGACTGCATTGGGAGTGGGCTGGAGCCCCAGGAACCACAAACCATaGCTTGTGCCATCCTTTCCC +
Preference number: 4 (lower is better)
Translates to: VPLMGIQVLTALGVGWSPRNHKP*LVPSFP
Trigger: GGGAAAGGATGGCACAAGGCATGGTTTGTGGTTCCT...GGGGCTCCAGCCCACTCCCAATGCAGTCAATACTTGAATTCCCATCAAGGGCAC
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000026296.8
ENSMUST00000112685.8
CDS-3UTR GCA 90 bp TGGATCTGGACGATAAAATACTGGATTGCTTTGGGGCTAGGTAGAAGCTATAAGGTCTGGCCGCTCTCCTaGCTCAGGAGGCCCCACCTC +
Preference number: 4 (lower is better)
Translates to: WIWTIKYWIALGLGRSYKVWPLS*LRRPHL
Trigger: GAGGTGGGGCCTCCTGAGGCAGGAGAGCGGCCAGAC...CTTATAGCTTCTACCTAGCCCCAAAGCAATCCAGTATTTTATCGTCCAGATCCA
53% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 2 transcripts:
ENSMUST00000026296.8
ENSMUST00000112685.8
CDS-3UTR CCA 90 bp GACCCAGCATTCGGGATTGAAAGTGCCCTTGATGGGAATTCAAGTATTGACTGCCTGTGGCAACATGGCTaGCTCTGGGGGAACTGGGCA +
Preference number: 4 (lower is better)
Translates to: DPAFGIESALDGNSSIDCLWQHG*LWGNWA
Trigger: TGCCCAGTTCCCCCAGAGCCAGCCATGTTGCCACAG...GCAGTCAATACTTGAATTCCCATCAAGGGCACTTTCAATCCCGAATGCTGGGTC
53% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000026296.8
ENSMUST00000112685.8
CDS-3UTR CCA 90 bp TTCGGGATTGAAAGTGCCCTTGATGGGAATTCAAGTATTGACTGCATTGGGAGTTGGGAGCCAGGCCGGTaGGGGTCGGCCAAAGCTACT +
Preference number: 4 (lower is better)
Translates to: FGIESALDGNSSIDCIGSWEPGR*GSAKAT
Trigger: AGTAGCTTTGGCCGACCCCCACCGGCCTGGCTCCCA...ACTCCCAATGCAGTCAATACTTGAATTCCCATCAAGGGCACTTTCAATCCCGAA
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000026296.8
ENSMUST00000112685.8
CDS-3UTR CCA 90 bp CCATTCCCGTCCTGCCCAGTGGCCCTGCCATGGATCTGGACGATAAAATACTGGAGTGTTCTGCTGCTGTaGCTATCAGCTCCAAAGACT +
Preference number: 4 (lower is better)
Translates to: PFPSCPVALPWIWTIKYWSVLLL*LSAPKT
Trigger: AGTCTTTGGAGCTGATAGCCACAGCAGCAGAACACT...CCAGTATTTTATCGTCCAGATCCATGGCAGGGCCACTGGGCAGGACGGGAATGG
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000026296.8
ENSMUST00000112685.8
CDS-3UTR CCA 90 bp TTGATGGGAATTCAAGTATTGACTGCATTGGGAGTGGGCTGGAGCCCCCAATTGCCACAGGCCTTGCAGTaGTGCCTGCGTTTGGTGATG +
Preference number: 4 (lower is better)
Translates to: LMGIQVLTALGVGWSPQLPQALQ*CLRLVM
Trigger: CATCACCAAACGCAGGCACCACTGCAAGGCCTGTGG...CAATTGGGGGCTCCAGCCCACTCCCAATGCAGTCAATACTTGAATTCCCATCAA
53% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000026296.8
ENSMUST00000112685.8
CDS-3UTR CCA 90 bp CCCCCATTCCCGTCCTGCCCAGTGGCCCTGCCATGGATCTGGACGATAAAATACCAGTGCACACACGGTTaGAACGATTGTTGTCATAGA +
Preference number: 4 (lower is better)
Translates to: PPFPSCPVALPWIWTIKYQCTHG*NDCCHR
Trigger: TCTATGACAACAATCGTTCCAACCGTGTGTGCACTG...GTATTTTATCGTCCAGATCCATGGCAGGGCCACTGGGCAGGACGGGAATGGGGG
53% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000026296.8
ENSMUST00000112685.8
CDS-3UTR CCA 90 bp GAAAGTGCCCTTGATGGGAATTCAAGTATTGACTGCATTGGGAGTGGGCTGGAGATGGACCTCCTGCGCTaGGGTGTATGCTGGCTACAG +
Preference number: 4 (lower is better)
Translates to: ESALDGNSSIDCIGSGLEMDLLR*GVCWLQ
Trigger: CTGTAGCCAGCATACACCCCAGCGCAGGAGGTCCAT...CTCCAGCCCACTCCCAATGCAGTCAATACTTGAATTCCCATCAAGGGCACTTTC
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000026296.8
ENSMUST00000112685.8
CDS-3UTR TCA 90 bp CCCCCATTCCCGTCCTGCCCAGTGGCCCTGCCATGGATCTGGACGATAAAATACTTAACAGATAGTCCTTaGGAAGAAGTTCATAGCGGG +
Preference number: 4 (lower is better)
Translates to: PPFPSCPVALPWIWTIKYLTDSP*EEVHSG
Trigger: CCCGCTATGAACTTCTTCTCAAGGACTATCTGTTAA...GTATTTTATCGTCCAGATCCATGGCAGGGCCACTGGGCAGGACGGGAATGGGGG
52% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000026296.8
ENSMUST00000112685.8
CDS-3UTR TCA 90 bp GACCCAGCATTCGGGATTGAAAGTGCCCTTGATGGGAATTCAAGTATTGACTGCGCAGGAAGCTGCAGATaGCGCTGTTCTCAGCAGCGA +
Preference number: 4 (lower is better)
Translates to: DPAFGIESALDGNSSIDCAGSCR*RCSQQR
Trigger: TCGCTGCTGAGAACAGCGTCATCTGCAGCTTCCTGC...GCAGTCAATACTTGAATTCCCATCAAGGGCACTTTCAATCCCGAATGCTGGGTC
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000026296.8
ENSMUST00000112685.8
CDS-3UTR GCA 90 bp TTGATGGGAATTCAAGTATTGACTGCATTGGGAGTGGGCTGGAGCCCCCAATTGGCTGCAAGGTCAGGTTaGCACAGGCTTCCTCCTTCT +
Preference number: 4 (lower is better)
Translates to: LMGIQVLTALGVGWSPQLAARSG*HRLPPS
Trigger: AGAAGGAGGAAGCCTGTGGCAACCTGACCTTGCAGC...CAATTGGGGGCTCCAGCCCACTCCCAATGCAGTCAATACTTGAATTCCCATCAA
52% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000026296.8
ENSMUST00000112685.8
CDS-3UTR GCA 90 bp GTGCCCTTGATGGGAATTCAAGTATTGACTGCATTGGGAGTGGGCTGGAGCCCCACCTTCAGCAGCTTGTaGATTCGTTCCATTTTCCGG +
Preference number: 4 (lower is better)
Translates to: VPLMGIQVLTALGVGWSPTFSSL*IRSIFR
Trigger: CCGGAAAATGGAACGAATGCACAAGCTGCTGAAGGT...GGGGCTCCAGCCCACTCCCAATGCAGTCAATACTTGAATTCCCATCAAGGGCAC
52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000026296.8
ENSMUST00000112685.8
CDS-3UTR GCA 90 bp CAAGTATTGACTGCATTGGGAGTGGGCTGGAGCCCCCAATTGAACATGGGCAGCATCTACATCAATGCGTaGCCGCACGCTAAACTTCTG +
Preference number: 4 (lower is better)
Translates to: QVLTALGVGWSPQLNMGSIYINA*PHAKLL
Trigger: CAGAAGTTTAGCGTGCGGGCACGCATTGATGTAGAT...GCTGCCCATGTTCAATTGGGGGCTCCAGCCCACTCCCAATGCAGTCAATACTTG
52% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000026296.8
ENSMUST00000112685.8
CDS-3UTR GCA 90 bp GACCCAGCATTCGGGATTGAAAGTGCCCTTGATGGGAATTCAAGTATTGACTGCCCGGATAGGCGTAGGTaGCCTCTTCCCAAGATCCAC +
Preference number: 4 (lower is better)
Translates to: DPAFGIESALDGNSSIDCPDRRR*PLPKIH
Trigger: GTGGATCTTGGGAAGAGGGCACCTACGCCTATCCGG...GCAGTCAATACTTGAATTCCCATCAAGGGCACTTTCAATCCCGAATGCTGGGTC
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000026296.8
ENSMUST00000112685.8
CDS-3UTR GCA 90 bp GAAAGTGCCCTTGATGGGAATTCAAGTATTGACTGCATTGGGAGTGGGCTGGAGCAGGCCTTGCAGTGGTaGCTGCGTTTGGTGATGGAA +
Preference number: 4 (lower is better)
Translates to: ESALDGNSSIDCIGSGLEQALQW*LRLVME
Trigger: TTCCATCACCAAACGCAGGCACCACTGCAAGGCCTG...CTCCAGCCCACTCCCAATGCAGTCAATACTTGAATTCCCATCAAGGGCACTTTC
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000026296.8
ENSMUST00000112685.8
CDS-3UTR GCA 90 bp TTGATGGGAATTCAAGTATTGACTGCATTGGGAGTGGGCTGGAGCCCCCAATTGTTCCCACAAACCACATaGCCACAGGCCTTGCAGTGG +
Preference number: 4 (lower is better)
Translates to: LMGIQVLTALGVGWSPQLFPQTT*PQALQW
Trigger: CCACTGCAAGGCCTGTGGGCATGTGGTTTGTGGGAA...CAATTGGGGGCTCCAGCCCACTCCCAATGCAGTCAATACTTGAATTCCCATCAA
52% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000026296.8
ENSMUST00000112685.8
CDS-3UTR CCA 90 bp GACCCAGCATTCGGGATTGAAAGTGCCCTTGATGGGAATTCAAGTATTGACTGCCAGGTAGCTGGGCTTTaGGGGAACCTGTGGCTTTGG +
Preference number: 4 (lower is better)
Translates to: DPAFGIESALDGNSSIDCQVAGL*GNLWLW
Trigger: CCAAAGCCACAGGTTCCCCCAAAGCCCAGCTACCTG...GCAGTCAATACTTGAATTCCCATCAAGGGCACTTTCAATCCCGAATGCTGGGTC
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000026296.8
CDS-3UTR CCA 90 bp CCATTCCCGTCCTGCCCAGTGGCCCTGCCATGGATCTGGACGATAAAATACTGGAGCTCATTGGCAATATaGAACACCTTCTGCTGCACA +
Preference number: 4 (lower is better)
Translates to: PFPSCPVALPWIWTIKYWSSLAI*NTFCCT
Trigger: TGTGCAGCAGAAGGTGTTCCATATTGCCAATGAGCT...CCAGTATTTTATCGTCCAGATCCATGGCAGGGCCACTGGGCAGGACGGGAATGG
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000026296.8
ENSMUST00000112685.8
CDS-3UTR CCA 90 bp TTGATGGGAATTCAAGTATTGACTGCATTGGGAGTGGGCTGGAGCCCCCAATTGGTCTTGTCTCGGGTCTaGGAGGCTTCAGGAGGTTCA +
Preference number: 4 (lower is better)
Translates to: LMGIQVLTALGVGWSPQLVLSRV*EASGGS
Trigger: TGAACCTCCTGAAGCCTCCCAGACCCGAGACAAGAC...CAATTGGGGGCTCCAGCCCACTCCCAATGCAGTCAATACTTGAATTCCCATCAA
52% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000026296.8
ENSMUST00000112685.8
CDS-3UTR TCA 90 bp TTGAAAGTGCCCTTGATGGGAATTCAAGTATTGACTGCATTGGGAGTGGGCTGGGAGGGTCCAACAAACTaGGGATCCAAAGGGCCTCCA +
Preference number: 4 (lower is better)
Translates to: LKVPLMGIQVLTALGVGWEGPTN*GSKGPP
Trigger: TGGAGGCCCTTTGGATCCTCAGTTTGTTGGACCCTC...CCAGCCCACTCCCAATGCAGTCAATACTTGAATTCCCATCAAGGGCACTTTCAA
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000026296.8
CDS-3UTR TCA 90 bp GACCCAGCATTCGGGATTGAAAGTGCCCTTGATGGGAATTCAAGTATTGACTGCTGTTGGATGGCGAGCTaGTGCTGTCAATGCCGCTGT +
Preference number: 4 (lower is better)
Translates to: DPAFGIESALDGNSSIDCCWMAS*CCQCRC
Trigger: ACAGCGGCATTGACAGCATCAGCTCGCCATCCAACA...GCAGTCAATACTTGAATTCCCATCAAGGGCACTTTCAATCCCGAATGCTGGGTC
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000026296.8
ENSMUST00000112685.8
CDS-3UTR TCA 90 bp CCATTCCCGTCCTGCCCAGTGGCCCTGCCATGGATCTGGACGATAAAATACTGGTTAACAGATAGTCCTTaGGAAGAAGTTCATAGCGGG +
Preference number: 4 (lower is better)
Translates to: PFPSCPVALPWIWTIKYWLTDSP*EEVHSG
Trigger: CCCGCTATGAACTTCTTCTCAAGGACTATCTGTTAA...CCAGTATTTTATCGTCCAGATCCATGGCAGGGCCACTGGGCAGGACGGGAATGG
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000026296.8
ENSMUST00000112685.8
CDS-3UTR TCA 90 bp TTGATGGGAATTCAAGTATTGACTGCATTGGGAGTGGGCTGGAGCCCCCAATTGAGGTCCGAGGCATGTTaGGGTTGGAGCTCTCCTTTA +
Preference number: 4 (lower is better)
Translates to: LMGIQVLTALGVGWSPQLRSEAC*GWSSPL
Trigger: TAAAGGAGAGCTCCAACCTCAACATGCCTCGGACCT...CAATTGGGGGCTCCAGCCCACTCCCAATGCAGTCAATACTTGAATTCCCATCAA
51% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000026296.8
ENSMUST00000112685.8
CDS-3UTR TCA 90 bp TTGAAAGTGCCCTTGATGGGAATTCAAGTATTGACTGCATTGGGAGTGGGCTGGCTTCTGTCTCTGGGCTaGAGTACCAGCTTAGGTGGC +
Preference number: 4 (lower is better)
Translates to: LKVPLMGIQVLTALGVGWLLSLG*STSLGG
Trigger: GCCACCTAAGCTGGTACTTCAGCCCAGAGACAGAAG...CCAGCCCACTCCCAATGCAGTCAATACTTGAATTCCCATCAAGGGCACTTTCAA
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000026296.8
ENSMUST00000112685.8
CDS-3UTR TCA 90 bp TTCGGGATTGAAAGTGCCCTTGATGGGAATTCAAGTATTGACTGCATTGGGAGTTTCAGCAGTGGCTCCTaGGGCTGCCACTGGTGTCTC +
Preference number: 4 (lower is better)
Translates to: FGIESALDGNSSIDCIGSFSSGS*GCHWCL
Trigger: GAGACACCAGTGGCAGCCTCAGGAGCCACTGCTGAA...ACTCCCAATGCAGTCAATACTTGAATTCCCATCAAGGGCACTTTCAATCCCGAA
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000026296.8
ENSMUST00000112685.8
CDS-3UTR GCA 90 bp TTCGGGATTGAAAGTGCCCTTGATGGGAATTCAAGTATTGACTGCATTGGGAGTGGCTACAGGCTGGACTaGTCCCAGGTGCTCCATGCA +
Preference number: 4 (lower is better)
Translates to: FGIESALDGNSSIDCIGSGYRLD*SQVLHA
Trigger: TGCATGGAGCACCTGGGAGCAGTCCAGCCTGTAGCC...ACTCCCAATGCAGTCAATACTTGAATTCCCATCAAGGGCACTTTCAATCCCGAA
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000026296.8
ENSMUST00000112685.8
CDS-3UTR GCA 90 bp TTGATGGGAATTCAAGTATTGACTGCATTGGGAGTGGGCTGGAGCCCCCAATTGGTGATCTTGAAGACATaGCTCCTGTCTGGCCGCTCT +
Preference number: 4 (lower is better)
Translates to: LMGIQVLTALGVGWSPQLVILKT*LLSGRS
Trigger: AGAGCGGCCAGACAGGAGGCATGTCTTCAAGATCAC...CAATTGGGGGCTCCAGCCCACTCCCAATGCAGTCAATACTTGAATTCCCATCAA
51% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000026296.8
ENSMUST00000112685.8
CDS-3UTR CCA 90 bp CAAGTATTGACTGCATTGGGAGTGGGCTGGAGCCCCCAATTGAACATGGGCAGCGGTATCGATCTTGAGTaGTCCCATTCTTTGCTGACA +
Preference number: 4 (lower is better)
Translates to: QVLTALGVGWSPQLNMGSGIDLE*SHSLLT
Trigger: TGTCAGCAAAGAATGGGACCACTCAAGATCGATACC...GCTGCCCATGTTCAATTGGGGGCTCCAGCCCACTCCCAATGCAGTCAATACTTG
51% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000026296.8
ENSMUST00000112685.8
CDS-3UTR CCA 90 bp TGGATCTGGACGATAAAATACTGGATTGCTTTGGGGCTAGGTAGAAGCTATAAGCAAGGAGCCGCAGCCTaGGCACGCAGTAAAGGAGGC +
Preference number: 4 (lower is better)
Translates to: WIWTIKYWIALGLGRSYKQGAAA*ARSKGG
Trigger: GCCTCCTTTACTGCGTGCCCAGGCTGCGGCTCCTTG...CTTATAGCTTCTACCTAGCCCCAAAGCAATCCAGTATTTTATCGTCCAGATCCA
51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000026296.8
ENSMUST00000112685.8
CDS-3UTR CCA 90 bp TTGAAAGTGCCCTTGATGGGAATTCAAGTATTGACTGCATTGGGAGTGGGCTGGTGTCCTCAGACAGTGTaGGCCCTGGGCAGAATGTGT +
Preference number: 4 (lower is better)
Translates to: LKVPLMGIQVLTALGVGWCPQTV*ALGRMC
Trigger: ACACATTCTGCCCAGGGCCCACACTGTCTGAGGACA...CCAGCCCACTCCCAATGCAGTCAATACTTGAATTCCCATCAAGGGCACTTTCAA
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000026296.8
ENSMUST00000112685.8
3UTR CAA 72 bp AAAGTGCCCTTGATGGGAATTCAAGTATTGACTGCATaGGGAGTGGGCTGGAGCCCCCAATTGAACATGGGC +
Preference number: 4 (lower is better)
Translates to: KVPLMGIQVLTA*GVGWSPQLNMG
Trigger: GCCCATGTTCAATTGGGGGCTCCAGCCCACTCCCAATGCAGTCAATACTTGAATTCCCATCAAGGGCACTTT
51% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000026296.8
ENSMUST00000112685.8
CDS-3UTR TCA 90 bp TTCGGGATTGAAAGTGCCCTTGATGGGAATTCAAGTATTGACTGCATTGGGAGTGGGGCCCATCATCACTaGCGAAGCAGGTCTCTTCAC +
Preference number: 4 (lower is better)
Translates to: FGIESALDGNSSIDCIGSGAHHH*RSRSLH
Trigger: GTGAAGAGACCTGCTTCGTCAGTGATGATGGGCCCC...ACTCCCAATGCAGTCAATACTTGAATTCCCATCAAGGGCACTTTCAATCCCGAA
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000026296.8
ENSMUST00000112685.8
CDS-3UTR TCA 90 bp TTCGGGATTGAAAGTGCCCTTGATGGGAATTCAAGTATTGACTGCATTGGGAGTCGGGCACAGAATACCTaGTCCAGGAGATGGAGCCTG +
Preference number: 4 (lower is better)
Translates to: FGIESALDGNSSIDCIGSRAQNT*SRRWSL
Trigger: CAGGCTCCATCTCCTGGATCAGGTATTCTGTGCCCG...ACTCCCAATGCAGTCAATACTTGAATTCCCATCAAGGGCACTTTCAATCCCGAA
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000026296.8
ENSMUST00000112685.8
CDS-3UTR TCA 90 bp GAAAGTGCCCTTGATGGGAATTCAAGTATTGACTGCATTGGGAGTGGGCTGGAGGGTCCCATTCTTTGCTaGCAGCTTAAGGATATGGCC +
Preference number: 4 (lower is better)
Translates to: ESALDGNSSIDCIGSGLEGPILC*QLKDMA
Trigger: GGCCATATCCTTAAGCTGTCAGCAAAGAATGGGACC...CTCCAGCCCACTCCCAATGCAGTCAATACTTGAATTCCCATCAAGGGCACTTTC
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000026296.8
ENSMUST00000112685.8
CDS-3UTR TCA 90 bp TTGATGGGAATTCAAGTATTGACTGCATTGGGAGTGGGCTGGAGCCCCCAATTGGATTGTTGTCATAGATaGGTCGGGCTCGGAACTCAG +
Preference number: 4 (lower is better)
Translates to: LMGIQVLTALGVGWSPQLDCCHR*VGLGTQ
Trigger: CTGAGTTCCGAGCCCGACTCATCTATGACAACAATC...CAATTGGGGGCTCCAGCCCACTCCCAATGCAGTCAATACTTGAATTCCCATCAA
50% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000026296.8
ENSMUST00000112685.8
CDS-3UTR TCA 90 bp GAAAGTGCCCTTGATGGGAATTCAAGTATTGACTGCATTGGGAGTGGGCTGGAGGATTGTTGTCATAGATaGGTCGGGCTCGGAACTCAG +
Preference number: 4 (lower is better)
Translates to: ESALDGNSSIDCIGSGLEDCCHR*VGLGTQ
Trigger: CTGAGTTCCGAGCCCGACTCATCTATGACAACAATC...CTCCAGCCCACTCCCAATGCAGTCAATACTTGAATTCCCATCAAGGGCACTTTC
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000026296.8
ENSMUST00000112685.8
CDS-3UTR CCA 90 bp TGGATCTGGACGATAAAATACTGGATTGCTTTGGGGCTAGGTAGAAGCTATAAGGTGGCTGTGGCAACATaGCTGGCTCTGGGGGAACTG +
Preference number: 4 (lower is better)
Translates to: WIWTIKYWIALGLGRSYKVAVAT*LALGEL
Trigger: CAGTTCCCCCAGAGCCAGCCATGTTGCCACAGCCAC...CTTATAGCTTCTACCTAGCCCCAAAGCAATCCAGTATTTTATCGTCCAGATCCA
50% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 2 transcripts:
ENSMUST00000026296.8
ENSMUST00000112685.8
CDS-3UTR CCA 90 bp TTCGGGATTGAAAGTGCCCTTGATGGGAATTCAAGTATTGACTGCATTGGGAGTATGGACCTCCTGCGCTaGGGTGTATGCTGGCTACAG +
Preference number: 4 (lower is better)
Translates to: FGIESALDGNSSIDCIGSMDLLR*GVCWLQ
Trigger: CTGTAGCCAGCATACACCCCAGCGCAGGAGGTCCAT...ACTCCCAATGCAGTCAATACTTGAATTCCCATCAAGGGCACTTTCAATCCCGAA
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000026296.8
ENSMUST00000112685.8
CDS-3UTR CCA 90 bp CAAGTATTGACTGCATTGGGAGTGGGCTGGAGCCCCCAATTGAACATGGGCAGCAAGTACCAGCTTAGGTaGCTTTGTGTGATCTTGAAG +
Preference number: 4 (lower is better)
Translates to: QVLTALGVGWSPQLNMGSKYQLR*LCVILK
Trigger: CTTCAAGATCACACAAAGCCACCTAAGCTGGTACTT...GCTGCCCATGTTCAATTGGGGGCTCCAGCCCACTCCCAATGCAGTCAATACTTG
50% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000026296.8
ENSMUST00000112685.8
CDS-3UTR CCA 90 bp TGGATCTGGACGATAAAATACTGGATTGCTTTGGGGCTAGGTAGAAGCTATAAGAGACAGTGTGGGCCCTaGGCAGAATGTGTCCCCACG +
Preference number: 4 (lower is better)
Translates to: WIWTIKYWIALGLGRSYKRQCGP*AECVPT
Trigger: CGTGGGGACACATTCTGCCCAGGGCCCACACTGTCT...CTTATAGCTTCTACCTAGCCCCAAAGCAATCCAGTATTTTATCGTCCAGATCCA
50% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 2 transcripts:
ENSMUST00000026296.8
ENSMUST00000112685.8
CDS-3UTR TCA 90 bp GACCCAGCATTCGGGATTGAAAGTGCCCTTGATGGGAATTCAAGTATTGACTGCGGTCCCATTCTTTGCTaGCAGCTTAAGGATATGGCC +
Preference number: 4 (lower is better)
Translates to: DPAFGIESALDGNSSIDCGPILC*QLKDMA
Trigger: GGCCATATCCTTAAGCTGTCAGCAAAGAATGGGACC...GCAGTCAATACTTGAATTCCCATCAAGGGCACTTTCAATCCCGAATGCTGGGTC
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000026296.8
ENSMUST00000112685.8
CDS-3UTR GCA 90 bp TGGATCTGGACGATAAAATACTGGATTGCTTTGGGGCTAGGTAGAAGCTATAAGCTGCGGGGAAGGAACTaGGGTTCCGAGCTTCTTCCA +
Preference number: 4 (lower is better)
Translates to: WIWTIKYWIALGLGRSYKLRGRN*GSELLP
Trigger: TGGAAGAAGCTCGGAACCGCAGTTCCTTCCCCGCAG...CTTATAGCTTCTACCTAGCCCCAAAGCAATCCAGTATTTTATCGTCCAGATCCA
49% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 2 transcripts:
ENSMUST00000026296.8
ENSMUST00000112685.8
CDS-3UTR GCA 90 bp TTGAAAGTGCCCTTGATGGGAATTCAAGTATTGACTGCATTGGGAGTGGGCTGGTCCAGGGTCTGTTCATaGTTCAGGAGGGTGGAATTG +
Preference number: 4 (lower is better)
Translates to: LKVPLMGIQVLTALGVGWSRVCS*FRRVEL
Trigger: CAATTCCACCCTCCTGAAGCATGAACAGACCCTGGA...CCAGCCCACTCCCAATGCAGTCAATACTTGAATTCCCATCAAGGGCACTTTCAA
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000026296.8
ENSMUST00000112685.8
CDS-3UTR CCA 90 bp TGGATCTGGACGATAAAATACTGGATTGCTTTGGGGCTAGGTAGAAGCTATAAGGCATCTGCAGGTAGCTaGGCTTTGGGGGAACCTGTG +
Preference number: 4 (lower is better)
Translates to: WIWTIKYWIALGLGRSYKASAGS*ALGEPV
Trigger: CACAGGTTCCCCCAAAGCCCAGCTACCTGCAGATGC...CTTATAGCTTCTACCTAGCCCCAAAGCAATCCAGTATTTTATCGTCCAGATCCA
49% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 1 transcripts:
ENSMUST00000026296.8
CDS-3UTR CCA 90 bp CCATTCCCGTCCTGCCCAGTGGCCCTGCCATGGATCTGGACGATAAAATACTGGTCCTTCTGTACTTCATaGATGATGACTTTAAACTGG +
Preference number: 4 (lower is better)
Translates to: PFPSCPVALPWIWTIKYWSFCTS*MMTLNW
Trigger: CCAGTTTAAAGTCATCATCCATGAAGTACAGAAGGA...CCAGTATTTTATCGTCCAGATCCATGGCAGGGCCACTGGGCAGGACGGGAATGG
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000026296.8
ENSMUST00000112685.8
CDS-3UTR CCA 90 bp TTCGGGATTGAAAGTGCCCTTGATGGGAATTCAAGTATTGACTGCATTGGGAGTAGCTCCAAAGACTTCTaGGCATCCTTGCTGTCCGGG +
Preference number: 4 (lower is better)
Translates to: FGIESALDGNSSIDCIGSSSKDF*ASLLSG
Trigger: CCCGGACAGCAAGGATGCCCAGAAGTCTTTGGAGCT...ACTCCCAATGCAGTCAATACTTGAATTCCCATCAAGGGCACTTTCAATCCCGAA
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000026296.8
ENSMUST00000112685.8
CDS-3UTR CCA 90 bp GAAAGTGCCCTTGATGGGAATTCAAGTATTGACTGCATTGGGAGTGGGCTGGAGAGTGTTCTGCTGCTGTaGCTATCAGCTCCAAAGACT +
Preference number: 4 (lower is better)
Translates to: ESALDGNSSIDCIGSGLESVLLL*LSAPKT
Trigger: AGTCTTTGGAGCTGATAGCCACAGCAGCAGAACACT...CTCCAGCCCACTCCCAATGCAGTCAATACTTGAATTCCCATCAAGGGCACTTTC
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000026296.8
ENSMUST00000112685.8
CDS-3UTR TCA 90 bp GAAAGTGCCCTTGATGGGAATTCAAGTATTGACTGCATTGGGAGTGGGCTGGAGATGAGGTATCGATCTTaGGTGGTCCCATTCTTTGCT +
Preference number: 4 (lower is better)
Translates to: ESALDGNSSIDCIGSGLEMRYRS*VVPFFA
Trigger: AGCAAAGAATGGGACCACTCAAGATCGATACCTCAT...CTCCAGCCCACTCCCAATGCAGTCAATACTTGAATTCCCATCAAGGGCACTTTC
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000026296.8
ENSMUST00000112685.8
CDS-3UTR TCA 90 bp CAAGTATTGACTGCATTGGGAGTGGGCTGGAGCCCCCAATTGAACATGGGCAGCATCATCCCTGTTTGTTaGGTTCAACAGTTTGAAAGT +
Preference number: 4 (lower is better)
Translates to: QVLTALGVGWSPQLNMGSIIPVC*VQQFES
Trigger: ACTTTCAAACTGTTGAACTCAACAAACAGGGATGAT...GCTGCCCATGTTCAATTGGGGGCTCCAGCCCACTCCCAATGCAGTCAATACTTG
48% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000026296.8
ENSMUST00000112685.8
CDS-3UTR GCA 90 bp TGGATCTGGACGATAAAATACTGGATTGCTTTGGGGCTAGGTAGAAGCTATAAGGCTGCAAGGTCAGGTTaGCACAGGCTTCCTCCTTCT +
Preference number: 4 (lower is better)
Translates to: WIWTIKYWIALGLGRSYKAARSG*HRLPPS
Trigger: AGAAGGAGGAAGCCTGTGGCAACCTGACCTTGCAGC...CTTATAGCTTCTACCTAGCCCCAAAGCAATCCAGTATTTTATCGTCCAGATCCA
48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000026296.8
ENSMUST00000112685.8
CDS-3UTR GCA 90 bp GAAAGTGCCCTTGATGGGAATTCAAGTATTGACTGCATTGGGAGTGGGCTGGAGATTAGAGTGTTCTGCTaGTGTGGCTATCAGCTCCAA +
Preference number: 4 (lower is better)
Translates to: ESALDGNSSIDCIGSGLEIRVFC*CGYQLQ
Trigger: TTGGAGCTGATAGCCACAGCAGCAGAACACTCTAAT...CTCCAGCCCACTCCCAATGCAGTCAATACTTGAATTCCCATCAAGGGCACTTTC
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000026296.8
ENSMUST00000112685.8
CDS-3UTR GCA 90 bp TGGATCTGGACGATAAAATACTGGATTGCTTTGGGGCTAGGTAGAAGCTATAAGCAGGCCTTGCAGTGGTaGCTGCGTTTGGTGATGGAA +
Preference number: 4 (lower is better)
Translates to: WIWTIKYWIALGLGRSYKQALQW*LRLVME
Trigger: TTCCATCACCAAACGCAGGCACCACTGCAAGGCCTG...CTTATAGCTTCTACCTAGCCCCAAAGCAATCCAGTATTTTATCGTCCAGATCCA
48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000026296.8
ENSMUST00000112685.8
CDS-3UTR CCA 90 bp TGGATCTGGACGATAAAATACTGGATTGCTTTGGGGCTAGGTAGAAGCTATAAGATGGTGGTGGAGGAATaGGCTCAGGAGGAGGAAGCA +
Preference number: 4 (lower is better)
Translates to: WIWTIKYWIALGLGRSYKMVVEE*AQEEEA
Trigger: TGCTTCCTCCTCCTGAGCCCATTCCTCCACCACCAT...CTTATAGCTTCTACCTAGCCCCAAAGCAATCCAGTATTTTATCGTCCAGATCCA
48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000026296.8
ENSMUST00000112685.8
CDS-3UTR CCA 90 bp GACCCAGCATTCGGGATTGAAAGTGCCCTTGATGGGAATTCAAGTATTGACTGCCTCCATCGGGGGCACTaGAATTTCTCTTTCCTTTTC +
Preference number: 4 (lower is better)
Translates to: DPAFGIESALDGNSSIDCLHRGH*NFSFLF
Trigger: GAAAAGGAAAGAGAAATTCCAGTGCCCCCGATGGAG...GCAGTCAATACTTGAATTCCCATCAAGGGCACTTTCAATCCCGAATGCTGGGTC
48% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000026296.8
ENSMUST00000112685.8
CDS-3UTR CCA 90 bp GTGCCCTTGATGGGAATTCAAGTATTGACTGCATTGGGAGTGGGCTGGAGCCCCTCCTTCTGTACTTCATaGATGATGACTTTAAACTGG +
Preference number: 4 (lower is better)
Translates to: VPLMGIQVLTALGVGWSPSFCTS*MMTLNW
Trigger: CCAGTTTAAAGTCATCATCCATGAAGTACAGAAGGA...GGGGCTCCAGCCCACTCCCAATGCAGTCAATACTTGAATTCCCATCAAGGGCAC
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000026296.8
ENSMUST00000112685.8
CDS-3UTR CCA 90 bp GAAAGTGCCCTTGATGGGAATTCAAGTATTGACTGCATTGGGAGTGGGCTGGAGCAGTGCACACACGGTTaGAACGATTGTTGTCATAGA +
Preference number: 4 (lower is better)
Translates to: ESALDGNSSIDCIGSGLEQCTHG*NDCCHR
Trigger: TCTATGACAACAATCGTTCCAACCGTGTGTGCACTG...CTCCAGCCCACTCCCAATGCAGTCAATACTTGAATTCCCATCAAGGGCACTTTC
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000026296.8
ENSMUST00000112685.8
CDS-3UTR TCA 90 bp TTGAAAGTGCCCTTGATGGGAATTCAAGTATTGACTGCATTGGGAGTGGGCTGGATGAGGTATCGATCTTaGGTGGTCCCATTCTTTGCT +
Preference number: 4 (lower is better)
Translates to: LKVPLMGIQVLTALGVGWMRYRS*VVPFFA
Trigger: AGCAAAGAATGGGACCACTCAAGATCGATACCTCAT...CCAGCCCACTCCCAATGCAGTCAATACTTGAATTCCCATCAAGGGCACTTTCAA
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000026296.8
ENSMUST00000112685.8
CDS-3UTR GCA 90 bp TTGAAAGTGCCCTTGATGGGAATTCAAGTATTGACTGCATTGGGAGTGGGCTGGTCTCCTTTAGCTCCATaGCATCTACATCAATGCGTG +
Preference number: 4 (lower is better)
Translates to: LKVPLMGIQVLTALGVGWSPLAP*HLHQCV
Trigger: CACGCATTGATGTAGATGGCATGGAGCTAAAGGAGA...CCAGCCCACTCCCAATGCAGTCAATACTTGAATTCCCATCAAGGGCACTTTCAA
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000026296.8
ENSMUST00000112685.8
CDS-3UTR GCA 90 bp GACCCAGCATTCGGGATTGAAAGTGCCCTTGATGGGAATTCAAGTATTGACTGCTCTCCTTTAGCTCCATaGCATCTACATCAATGCGTG +
Preference number: 4 (lower is better)
Translates to: DPAFGIESALDGNSSIDCSPLAP*HLHQCV
Trigger: CACGCATTGATGTAGATGGCATGGAGCTAAAGGAGA...GCAGTCAATACTTGAATTCCCATCAAGGGCACTTTCAATCCCGAATGCTGGGTC
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000026296.8
ENSMUST00000112685.8
CDS-3UTR CCA 90 bp TGGATCTGGACGATAAAATACTGGATTGCTTTGGGGCTAGGTAGAAGCTATAAGCCAGGAGATGGAGCCTaGAAACATAGGCCTTCTCAG +
Preference number: 4 (lower is better)
Translates to: WIWTIKYWIALGLGRSYKPGDGA*KHRPSQ
Trigger: CTGAGAAGGCCTATGTTTCCAGGCTCCATCTCCTGG...CTTATAGCTTCTACCTAGCCCCAAAGCAATCCAGTATTTTATCGTCCAGATCCA
47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000026296.8
ENSMUST00000112685.8
CDS-3UTR CCA 90 bp TTGATGGGAATTCAAGTATTGACTGCATTGGGAGTGGGCTGGAGCCCCCAATTGATGATGACTTTAAACTaGGTAGACCGCTCTGTCCAT +
Preference number: 4 (lower is better)
Translates to: LMGIQVLTALGVGWSPQLMMTLN*VDRSVH
Trigger: ATGGACAGAGCGGTCTACCCAGTTTAAAGTCATCAT...CAATTGGGGGCTCCAGCCCACTCCCAATGCAGTCAATACTTGAATTCCCATCAA
47% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000026296.8
ENSMUST00000112685.8
CDS-3UTR CCA 90 bp TTGATGGGAATTCAAGTATTGACTGCATTGGGAGTGGGCTGGAGCCCCCAATTGAAGTACCAGCTTAGGTaGCTTTGTGTGATCTTGAAG +
Preference number: 4 (lower is better)
Translates to: LMGIQVLTALGVGWSPQLKYQLR*LCVILK
Trigger: CTTCAAGATCACACAAAGCCACCTAAGCTGGTACTT...CAATTGGGGGCTCCAGCCCACTCCCAATGCAGTCAATACTTGAATTCCCATCAA
47% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000026296.8
ENSMUST00000112685.8
3UTR CAA 72 bp AAACCCATGACCCAGCATTCGGGATTGAAAGTGCCCTaGATGGGAATTCAAGTATTGACTGCATTGGGAGTG +
Preference number: 4 (lower is better)
Translates to: KPMTQHSGLKVP*MGIQVLTALGV
Trigger: CACTCCCAATGCAGTCAATACTTGAATTCCCATCAAGGGCACTTTCAATCCCGAATGCTGGGTCATGGGTTT
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000026296.8
ENSMUST00000112685.8
CDS-3UTR GCA 90 bp TTCGGGATTGAAAGTGCCCTTGATGGGAATTCAAGTATTGACTGCATTGGGAGTCCACATAGCAATCAGTaGACACACGGTTGGAACGAT +
Preference number: 4 (lower is better)
Translates to: FGIESALDGNSSIDCIGSPHSNQ*THGWND
Trigger: ATCGTTCCAACCGTGTGTGCACTGATTGCTATGTGG...ACTCCCAATGCAGTCAATACTTGAATTCCCATCAAGGGCACTTTCAATCCCGAA
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000026296.8
ENSMUST00000112685.8
CDS-3UTR CCA 90 bp TTGAAAGTGCCCTTGATGGGAATTCAAGTATTGACTGCATTGGGAGTGGGCTGGATGATGACTTTAAACTaGGTAGACCGCTCTGTCCAT +
Preference number: 4 (lower is better)
Translates to: LKVPLMGIQVLTALGVGWMMTLN*VDRSVH
Trigger: ATGGACAGAGCGGTCTACCCAGTTTAAAGTCATCAT...CCAGCCCACTCCCAATGCAGTCAATACTTGAATTCCCATCAAGGGCACTTTCAA
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000026296.8
ENSMUST00000112685.8
CDS-3UTR CCA 90 bp TTCGGGATTGAAAGTGCCCTTGATGGGAATTCAAGTATTGACTGCATTGGGAGTAGCTCATTGGCAATATaGAACACCTTCTGCTGCACA +
Preference number: 4 (lower is better)
Translates to: FGIESALDGNSSIDCIGSSSLAI*NTFCCT
Trigger: TGTGCAGCAGAAGGTGTTCCATATTGCCAATGAGCT...ACTCCCAATGCAGTCAATACTTGAATTCCCATCAAGGGCACTTTCAATCCCGAA
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000026296.8
ENSMUST00000112685.8
CDS-3UTR CCA 90 bp TTCGGGATTGAAAGTGCCCTTGATGGGAATTCAAGTATTGACTGCATTGGGAGTGGTATCGATCTTGAGTaGTCCCATTCTTTGCTGACA +
Preference number: 4 (lower is better)
Translates to: FGIESALDGNSSIDCIGSGIDLE*SHSLLT
Trigger: TGTCAGCAAAGAATGGGACCACTCAAGATCGATACC...ACTCCCAATGCAGTCAATACTTGAATTCCCATCAAGGGCACTTTCAATCCCGAA
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000026296.8
ENSMUST00000112685.8
CDS-3UTR GCA 90 bp TGGATCTGGACGATAAAATACTGGATTGCTTTGGGGCTAGGTAGAAGCTATAAGATTAGAGTGTTCTGCTaGTGTGGCTATCAGCTCCAA +
Preference number: 4 (lower is better)
Translates to: WIWTIKYWIALGLGRSYKIRVFC*CGYQLQ
Trigger: TTGGAGCTGATAGCCACAGCAGCAGAACACTCTAAT...CTTATAGCTTCTACCTAGCCCCAAAGCAATCCAGTATTTTATCGTCCAGATCCA
43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000026296.8
ENSMUST00000112685.8
CDS-3UTR TCA 90 bp TGGATCTGGACGATAAAATACTGGATTGCTTTGGGGCTAGGTAGAAGCTATAAGATCATCCCTGTTTGTTaGGTTCAACAGTTTGAAAGT +
Preference number: 4 (lower is better)
Translates to: WIWTIKYWIALGLGRSYKIIPVC*VQQFES
Trigger: ACTTTCAAACTGTTGAACTCAACAAACAGGGATGAT...CTTATAGCTTCTACCTAGCCCCAAAGCAATCCAGTATTTTATCGTCCAGATCCA
40% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000026296.8
ENSMUST00000112685.8
CDS GCA 90 bp CAAACTGAGGATCCAAAGGGCCTCCAAGAGCCGTGCCTGAGCCCCTaGTCACCGGCAGCCCGGGTTCCAAGGCTCCAGGGTCCGAGTCGG +
Preference number: 5 (lower is better)
Translates to: QTEDPKGLQEPCLSP*SPAARVPRLQGPSR
Trigger: CCGACTCGGACCCTGGAGCCTTGGAACCCGGGCTGCCGGTGAGCAGGGGCTCAGGCACGGCTCTTGGAGGCCCTTTGGATCCTCAGTTTG
67% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000026296.8
CDS GCA 90 bp CAGACAGTGTGGGCCCTGGGCAGAATGTGTCCCCACGGCCCGCCCTaGCGAGAACAGCCATCCAGCGCCGCTGGAGTTCTTCTGTCTCTG +
Preference number: 5 (lower is better)
Translates to: QTVWALGRMCPHGPP*REQPSSAAGVLLSL
Trigger: CAGAGACAGAAGAACTCCAGCGGCGCTGGATGGCTGTTCTCGGCAGGGCGGGCCGTGGGGACACATTCTGCCCAGGGCCCACACTGTCTG
66% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000026296.8
ENSMUST00000112685.8
CDS TCA 90 bp GAGCTTGGAGGCGCTCCCAGGCTGGCATCCGAGGGTCCAACAAACTaGGGATCCAAAGGGCCTCCAAGAGCCGTGCCTGAGCCCCTGCTC +
Preference number: 5 (lower is better)
Translates to: ELGGAPRLASEGPTN*GSKGPPRAVPEPLL
Trigger: GAGCAGGGGCTCAGGCACGGCTCTTGGAGGCCCTTTGGATCCTCAGTTTGTTGGACCCTCGGATGCCAGCCTGGGAGCGCCTCCAAGCTC
64% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000026296.8
CDS CCA 90 bp AGGCTGCCACTGGTGTCTCCTCCATCTCCTTGTCCTCAGACAGTGTaGGCCCTGGGCAGAATGTGTCCCCACGGCCCGCCCTGCCGAGAA +
Preference number: 5 (lower is better)
Translates to: RLPLVSPPSPCPQTV*ALGRMCPHGPPCRE
Trigger: TTCTCGGCAGGGCGGGCCGTGGGGACACATTCTGCCCAGGGCCCACACTGTCTGAGGACAAGGAGATGGAGGAGACACCAGTGGCAGCCT
64% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000026296.8
ENSMUST00000112685.8
CDS CCA 90 bp GTGTCCCCACGGCCCGCCCTGCCGAGAACAGCCATCCAGCGCCGCTaGAGTTCTTCTGTCTCTGGGCTGAAGTACCAGCTTAGGTGGCTT +
Preference number: 5 (lower is better)
Translates to: VSPRPALPRTAIQRR*SSSVSGLKYQLRWL
Trigger: AAGCCACCTAAGCTGGTACTTCAGCCCAGAGACAGAAGAACTCCAGCGGCGCTGGATGGCTGTTCTCGGCAGGGCGGGCCGTGGGGACAC
63% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000026296.8
ENSMUST00000112685.8
CDS CCA 90 bp CACTGGTGTCTCCTCCATCTCCTTGTCCTCAGACAGTGTGGGCCCTaGGCAGAATGTGTCCCCACGGCCCGCCCTGCCGAGAACAGCCAT +
Preference number: 5 (lower is better)
Translates to: HWCLLHLLVLRQCGP*AECVPTARPAENSH
Trigger: ATGGCTGTTCTCGGCAGGGCGGGCCGTGGGGACACATTCTGCCCAGGGCCCACACTGTCTGAGGACAAGGAGATGGAGGAGACACCAGTG
63% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000026296.8
ENSMUST00000112685.8
CDS-3UTR CAA 90 bp CCCCCATTCCCGTCCTGCCCAGTGGCCCTGCCATGGATCTGGACGATAAAATACGGGGAACCTGTGGCTTaGGGCCCGGTGCCCGCTTCA +
Preference number: 5 (lower is better)
Translates to: PPFPSCPVALPWIWTIKYGEPVA*GPVPAS
Trigger: TGAAGCGGGCACCGGGCCCAAAGCCACAGGTTCCCC...GTATTTTATCGTCCAGATCCATGGCAGGGCCACTGGGCAGGACGGGAATGGGGG
63% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 1 transcripts:
ENSMUST00000026296.8
CDS-3UTR CAA 90 bp CCCGTCCTGCCCAGTGGCCCTGCCATGGATCTGGACGATAAAATACTGGATTGCGGAGCTGGGACCCTGTaGGCTGCGGGGGTGGCTGTG +
Preference number: 5 (lower is better)
Translates to: PVLPSGPAMDLDDKILDCGAGTL*AAGVAV
Trigger: CACAGCCACCCCCGCAGCCAACAGGGTCCCAGCTCC...GCAATCCAGTATTTTATCGTCCAGATCCATGGCAGGGCCACTGGGCAGGACGGG
63% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000026296.8
ENSMUST00000112685.8
CDS CCA 90 bp GAGGCCTGTTTCTCTAGGATGGACCTCCTGCGCTGGGGTGTATGCTaGCTACAGGCTGGACTGCTCCCAGGTGCTCCATGCAAGGCCACA +
Preference number: 5 (lower is better)
Translates to: EACFSRMDLLRWGVC*LQAGLLPGAPCKAT
Trigger: TGTGGCCTTGCATGGAGCACCTGGGAGCAGTCCAGCCTGTAGCCAGCATACACCCCAGCGCAGGAGGTCCATCCTAGAGAAACAGGCCTC
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000026296.8
ENSMUST00000112685.8
CDS GCA 90 bp GGATGGACCTCCTGCGCTGGGGTGTATGCTGGCTACAGGCTGGACTaGTCCCAGGTGCTCCATGCAAGGCCACATAGCAATCAGTGCACA +
Preference number: 5 (lower is better)
Translates to: GWTSCAGVYAGYRLD*SQVLHARPHSNQCT
Trigger: TGTGCACTGATTGCTATGTGGCCTTGCATGGAGCACCTGGGAGCAGTCCAGCCTGTAGCCAGCATACACCCCAGCGCAGGAGGTCCATCC
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000026296.8
ENSMUST00000112685.8
CDS TCA 90 bp GTGGGAGGGCCTGGATCTGAGCGAAGCCGTTGGGGACCTTCTGGATaGGGCTCAAGGCTCTGGCCAGGGTCAAGGGACAAACTTTTAACC +
Preference number: 5 (lower is better)
Translates to: VGGPGSERSRWGPSG*GSRLWPGSRDKLLT
Trigger: GGTTAAAAGTTTGTCCCTTGACCCTGGCCAGAGCCTTGAGCCTCATCCAGAAGGTCCCCAACGGCTTCGCTCAGATCCAGGCCCTCCCAC
59% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000026296.8
CDS GCA 90 bp GGGCTGAAGTACCAGCTTAGGTGGCTTTGTGTGATCTTGAAGACATaGCTCCTGTCTGGCCGCTCTCCTGCCTCAGGAGGCCCCACCTCA +
Preference number: 5 (lower is better)
Translates to: GLKYQLRWLCVILKT*LLSGRSPASGGPTS
Trigger: TGAGGTGGGGCCTCCTGAGGCAGGAGAGCGGCCAGACAGGAGGCATGTCTTCAAGATCACACAAAGCCACCTAAGCTGGTACTTCAGCCC
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000026296.8
ENSMUST00000112685.8
CDS-3UTR CAA 90 bp CCCCCATTCCCGTCCTGCCCAGTGGCCCTGCCATGGATCTGGACGATAAAATACCAGGTCTCTTCACTGTaGGATGGCGAGCTGATGCTG +
Preference number: 5 (lower is better)
Translates to: PPFPSCPVALPWIWTIKYQVSSL*DGELML
Trigger: CAGCATCAGCTCGCCATCCAACAGTGAAGAGACCTG...GTATTTTATCGTCCAGATCCATGGCAGGGCCACTGGGCAGGACGGGAATGGGGG
58% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000026296.8
ENSMUST00000112685.8
CDS-3UTR CAA 90 bp CCCGTCCTGCCCAGTGGCCCTGCCATGGATCTGGACGATAAAATACTGGATTGCCGTTTGGTGATGGAATaGAAGGGCTCCTGGCAGCGC +
Preference number: 5 (lower is better)
Translates to: PVLPSGPAMDLDDKILDCRLVME*KGSWQR
Trigger: GCGCTGCCAGGAGCCCTTCAATTCCATCACCAAACG...GCAATCCAGTATTTTATCGTCCAGATCCATGGCAGGGCCACTGGGCAGGACGGG
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000026296.8
ENSMUST00000112685.8
CDS-3UTR CAA 90 bp CAAGTATTGACTGCATTGGGAGTGGGCTGGAGCCCCCAATTGAACATGGGCAGCACATGCCCACAGGCCTaGCAGTGGTGCCTGCGTTTG +
Preference number: 5 (lower is better)
Translates to: QVLTALGVGWSPQLNMGSTCPQA*QWCLRL
Trigger: CAAACGCAGGCACCACTGCAAGGCCTGTGGGCATGT...GCTGCCCATGTTCAATTGGGGGCTCCAGCCCACTCCCAATGCAGTCAATACTTG
58% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000026296.8
ENSMUST00000112685.8
CDS-3UTR CAA 90 bp CCCCCATTCCCGTCCTGCCCAGTGGCCCTGCCATGGATCTGGACGATAAAATACAAGGTCCGAGGCATGTaGAGGTTGGAGCTCTCCTTT +
Preference number: 5 (lower is better)
Translates to: PPFPSCPVALPWIWTIKYKVRGM*RLELSF
Trigger: AAAGGAGAGCTCCAACCTCAACATGCCTCGGACCTT...GTATTTTATCGTCCAGATCCATGGCAGGGCCACTGGGCAGGACGGGAATGGGGG
57% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000026296.8
ENSMUST00000112685.8
CDS-3UTR CAA 90 bp CCCGTCCTGCCCAGTGGCCCTGCCATGGATCTGGACGATAAAATACTGGATTGCCAGTGGTGCCTGCGTTaGGTGATGGAATTGAAGGGC +
Preference number: 5 (lower is better)
Translates to: PVLPSGPAMDLDDKILDCQWCLR*VMELKG
Trigger: GCCCTTCAATTCCATCACCAAACGCAGGCACCACTG...GCAATCCAGTATTTTATCGTCCAGATCCATGGCAGGGCCACTGGGCAGGACGGG
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000026296.8
ENSMUST00000112685.8
CDS-3UTR CAA 90 bp CCATTCCCGTCCTGCCCAGTGGCCCTGCCATGGATCTGGACGATAAAATACTGGACCACAAACCATGCCTaGTGCCATCCTTTCCCACCC +
Preference number: 5 (lower is better)
Translates to: PFPSCPVALPWIWTIKYWTTNHA*CHPFPP
Trigger: GGGTGGGAAAGGATGGCACAAGGCATGGTTTGTGGT...CCAGTATTTTATCGTCCAGATCCATGGCAGGGCCACTGGGCAGGACGGGAATGG
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000026296.8
ENSMUST00000112685.8
CDS CCA 90 bp CGCCGCTGGAGTTCTTCTGTCTCTGGGCTGAAGTACCAGCTTAGGTaGCTTTGTGTGATCTTGAAGACATGCCTCCTGTCTGGCCGCTCT +
Preference number: 5 (lower is better)
Translates to: RRWSSSVSGLKYQLR*LCVILKTCLLSGRS
Trigger: AGAGCGGCCAGACAGGAGGCATGTCTTCAAGATCACACAAAGCCACCTAAGCTGGTACTTCAGCCCAGAGACAGAAGAACTCCAGCGGCG
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000026296.8
ENSMUST00000112685.8
CDS-3UTR CAA 90 bp CCATTCCCGTCCTGCCCAGTGGCCCTGCCATGGATCTGGACGATAAAATACTGGAAGGTCCGAGGCATGTaGAGGTTGGAGCTCTCCTTT +
Preference number: 5 (lower is better)
Translates to: PFPSCPVALPWIWTIKYWKVRGM*RLELSF
Trigger: AAAGGAGAGCTCCAACCTCAACATGCCTCGGACCTT...CCAGTATTTTATCGTCCAGATCCATGGCAGGGCCACTGGGCAGGACGGGAATGG
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000026296.8
ENSMUST00000112685.8
CDS-3UTR CAA 90 bp GAAAGTGCCCTTGATGGGAATTCAAGTATTGACTGCATTGGGAGTGGGCTGGAGGCAGGTAGCTGGGCTTaGGGGGAACCTGTGGCTTTG +
Preference number: 5 (lower is better)
Translates to: ESALDGNSSIDCIGSGLEAGSWA*GEPVAL
Trigger: CAAAGCCACAGGTTCCCCCAAAGCCCAGCTACCTGC...CTCCAGCCCACTCCCAATGCAGTCAATACTTGAATTCCCATCAAGGGCACTTTC
54% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000026296.8
CDS-3UTR CAA 90 bp TTGAAAGTGCCCTTGATGGGAATTCAAGTATTGACTGCATTGGGAGTGGGCTGGCGCTCTGTCCATGTGTaGACCAGCTCTACCGCCCGG +
Preference number: 5 (lower is better)
Translates to: LKVPLMGIQVLTALGVGWRSVHV*TSSTAR
Trigger: CCGGGCGGTAGAGCTGGTCAACACATGGACAGAGCG...CCAGCCCACTCCCAATGCAGTCAATACTTGAATTCCCATCAAGGGCACTTTCAA
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000026296.8
ENSMUST00000112685.8
CDS-3UTR CAA 90 bp CCCCCATTCCCGTCCTGCCCAGTGGCCCTGCCATGGATCTGGACGATAAAATACTGGCTTTGTGTGATCTaGAAGACATGCCTCCTGTCT +
Preference number: 5 (lower is better)
Translates to: PPFPSCPVALPWIWTIKYWLCVI*KTCLLS
Trigger: AGACAGGAGGCATGTCTTCAAGATCACACAAAGCCA...GTATTTTATCGTCCAGATCCATGGCAGGGCCACTGGGCAGGACGGGAATGGGGG
54% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000026296.8
ENSMUST00000112685.8
CDS CCA 90 bp CCACAGGCTTCCTCCTTCTGTACTTCATGGATGATGACTTTAAACTaGGTAGACCGCTCTGTCCATGTGTTGACCAGCTCTACCGCCCGG +
Preference number: 5 (lower is better)
Translates to: PQASSFCTSWMMTLN*VDRSVHVLTSSTAR
Trigger: CCGGGCGGTAGAGCTGGTCAACACATGGACAGAGCGGTCTACCCAGTTTAAAGTCATCATCCATGAAGTACAGAAGGAGGAAGCCTGTGG
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000026296.8
ENSMUST00000112685.8
CDS-3UTR CAA 90 bp GAAAGTGCCCTTGATGGGAATTCAAGTATTGACTGCATTGGGAGTGGGCTGGAGCAGGTCTCTTCACTGTaGGATGGCGAGCTGATGCTG +
Preference number: 5 (lower is better)
Translates to: ESALDGNSSIDCIGSGLEQVSSL*DGELML
Trigger: CAGCATCAGCTCGCCATCCAACAGTGAAGAGACCTG...CTCCAGCCCACTCCCAATGCAGTCAATACTTGAATTCCCATCAAGGGCACTTTC
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000026296.8
ENSMUST00000112685.8
CDS-3UTR CAA 90 bp GTGCCCTTGATGGGAATTCAAGTATTGACTGCATTGGGAGTGGGCTGGAGCCCCATAGGCCTTCTCAGTTaGCAGGAGCTCATTGGCAAT +
Preference number: 5 (lower is better)
Translates to: VPLMGIQVLTALGVGWSPIGLLS*QELIGN
Trigger: ATTGCCAATGAGCTCCTGCAAACTGAGAAGGCCTAT...GGGGCTCCAGCCCACTCCCAATGCAGTCAATACTTGAATTCCCATCAAGGGCAC
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000026296.8
ENSMUST00000112685.8
CDS-3UTR CAA 90 bp CAAGTATTGACTGCATTGGGAGTGGGCTGGAGCCCCCAATTGAACATGGGCAGCATAGGCCTTCTCAGTTaGCAGGAGCTCATTGGCAAT +
Preference number: 5 (lower is better)
Translates to: QVLTALGVGWSPQLNMGSIGLLS*QELIGN
Trigger: ATTGCCAATGAGCTCCTGCAAACTGAGAAGGCCTAT...GCTGCCCATGTTCAATTGGGGGCTCCAGCCCACTCCCAATGCAGTCAATACTTG
52% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000026296.8
ENSMUST00000112685.8
CDS-3UTR CAA 90 bp CCCGTCCTGCCCAGTGGCCCTGCCATGGATCTGGACGATAAAATACTGGATTGCGTTGAGTTCAACAGTTaGAAAGTCTCCAGGGTCTGT +
Preference number: 5 (lower is better)
Translates to: PVLPSGPAMDLDDKILDCVEFNS*KVSRVC
Trigger: ACAGACCCTGGAGACTTTCAAACTGTTGAACTCAAC...GCAATCCAGTATTTTATCGTCCAGATCCATGGCAGGGCCACTGGGCAGGACGGG
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000026296.8
ENSMUST00000112685.8
CDS-3UTR CAA 90 bp TTGAAAGTGCCCTTGATGGGAATTCAAGTATTGACTGCATTGGGAGTGGGCTGGCGTTTGGTGATGGAATaGAAGGGCTCCTGGCAGCGC +
Preference number: 5 (lower is better)
Translates to: LKVPLMGIQVLTALGVGWRLVME*KGSWQR
Trigger: GCGCTGCCAGGAGCCCTTCAATTCCATCACCAAACG...CCAGCCCACTCCCAATGCAGTCAATACTTGAATTCCCATCAAGGGCACTTTCAA
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000026296.8
ENSMUST00000112685.8
CDS-3UTR CAA 90 bp TGGATCTGGACGATAAAATACTGGATTGCTTTGGGGCTAGGTAGAAGCTATAAGCGCTCTGTCCATGTGTaGACCAGCTCTACCGCCCGG +
Preference number: 5 (lower is better)
Translates to: WIWTIKYWIALGLGRSYKRSVHV*TSSTAR
Trigger: CCGGGCGGTAGAGCTGGTCAACACATGGACAGAGCG...CTTATAGCTTCTACCTAGCCCCAAAGCAATCCAGTATTTTATCGTCCAGATCCA
51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000026296.8
ENSMUST00000112685.8
CDS-3UTR CAA 90 bp CAAGTATTGACTGCATTGGGAGTGGGCTGGAGCCCCCAATTGAACATGGGCAGCTACACCTTCAGCAGCTaGTGCATTCGTTCCATTTTC +
Preference number: 5 (lower is better)
Translates to: QVLTALGVGWSPQLNMGSYTFSS*CIRSIF
Trigger: GAAAATGGAACGAATGCACAAGCTGCTGAAGGTGTA...GCTGCCCATGTTCAATTGGGGGCTCCAGCCCACTCCCAATGCAGTCAATACTTG
51% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000026296.8
ENSMUST00000112685.8
CDS-3UTR CAA 90 bp TTGAAAGTGCCCTTGATGGGAATTCAAGTATTGACTGCATTGGGAGTGGGCTGGCGAGGCATGTTGAGGTaGGAGCTCTCCTTTAGCTCC +
Preference number: 5 (lower is better)
Translates to: LKVPLMGIQVLTALGVGWRGMLR*ELSFSS
Trigger: GGAGCTAAAGGAGAGCTCCAACCTCAACATGCCTCG...CCAGCCCACTCCCAATGCAGTCAATACTTGAATTCCCATCAAGGGCACTTTCAA
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000026296.8
ENSMUST00000112685.8
CDS-3UTR CAA 90 bp GACCCAGCATTCGGGATTGAAAGTGCCCTTGATGGGAATTCAAGTATTGACTGCACCACAAACCATGCCTaGTGCCATCCTTTCCCACCC +
Preference number: 5 (lower is better)
Translates to: DPAFGIESALDGNSSIDCTTNHA*CHPFPP
Trigger: GGGTGGGAAAGGATGGCACAAGGCATGGTTTGTGGT...GCAGTCAATACTTGAATTCCCATCAAGGGCACTTTCAATCCCGAATGCTGGGTC
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000026296.8
ENSMUST00000112685.8
CDS-3UTR CAA 90 bp TGGATCTGGACGATAAAATACTGGATTGCTTTGGGGCTAGGTAGAAGCTATAAGACATGCCCACAGGCCTaGCAGTGGTGCCTGCGTTTG +
Preference number: 5 (lower is better)
Translates to: WIWTIKYWIALGLGRSYKTCPQA*QWCLRL
Trigger: CAAACGCAGGCACCACTGCAAGGCCTGTGGGCATGT...CTTATAGCTTCTACCTAGCCCCAAAGCAATCCAGTATTTTATCGTCCAGATCCA
50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000026296.8
ENSMUST00000112685.8
CDS-3UTR CAA 90 bp TTGATGGGAATTCAAGTATTGACTGCATTGGGAGTGGGCTGGAGCCCCCAATTGGTTTGCAGGAGCTCATaGGCAATATGGAACACCTTC +
Preference number: 5 (lower is better)
Translates to: LMGIQVLTALGVGWSPQLVCRSS*AIWNTF
Trigger: GAAGGTGTTCCATATTGCCAATGAGCTCCTGCAAAC...CAATTGGGGGCTCCAGCCCACTCCCAATGCAGTCAATACTTGAATTCCCATCAA
49% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000026296.8
ENSMUST00000112685.8
CDS-3UTR CAA 90 bp GAAAGTGCCCTTGATGGGAATTCAAGTATTGACTGCATTGGGAGTGGGCTGGAGTCCTTTATGAGCTCTTaGGTGGGACTGACAATGTCC +
Preference number: 5 (lower is better)
Translates to: ESALDGNSSIDCIGSGLESFMSS*VGLTMS
Trigger: GGACATTGTCAGTCCCACCAAAGAGCTCATAAAGGA...CTCCAGCCCACTCCCAATGCAGTCAATACTTGAATTCCCATCAAGGGCACTTTC
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000026296.8
ENSMUST00000112685.8
CDS-3UTR CAA 90 bp TTCGGGATTGAAAGTGCCCTTGATGGGAATTCAAGTATTGACTGCATTGGGAGTCAGTGGTGCCTGCGTTaGGTGATGGAATTGAAGGGC +
Preference number: 5 (lower is better)
Translates to: FGIESALDGNSSIDCIGSQWCLR*VMELKG
Trigger: GCCCTTCAATTCCATCACCAAACGCAGGCACCACTG...ACTCCCAATGCAGTCAATACTTGAATTCCCATCAAGGGCACTTTCAATCCCGAA
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000026296.8
ENSMUST00000112685.8
CDS GCA 90 bp CTGTTTGTTGAGTTCAACAGTTTGAAAGTCTCCAGGGTCTGTTCATaGTTCAGGAGGGTGGAATTGATGGCCTGGACCCAGTCTTTCTTC +
Preference number: 5 (lower is better)
Translates to: LFVEFNSLKVSRVCS*FRRVELMAWTQSFF
Trigger: GAAGAAAGACTGGGTCCAGGCCATCAATTCCACCCTCCTGAAGCATGAACAGACCCTGGAGACTTTCAAACTGTTGAACTCAACAAACAG
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000026296.8
ENSMUST00000112685.8
CDS-3UTR CAA 90 bp TTGAAAGTGCCCTTGATGGGAATTCAAGTATTGACTGCATTGGGAGTGGGCTGGTCCTTTATGAGCTCTTaGGTGGGACTGACAATGTCC +
Preference number: 5 (lower is better)
Translates to: LKVPLMGIQVLTALGVGWSFMSS*VGLTMS
Trigger: GGACATTGTCAGTCCCACCAAAGAGCTCATAAAGGA...CCAGCCCACTCCCAATGCAGTCAATACTTGAATTCCCATCAAGGGCACTTTCAA
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000026296.8
ENSMUST00000112685.8
CDS-3UTR CAA 90 bp TTGATGGGAATTCAAGTATTGACTGCATTGGGAGTGGGCTGGAGCCCCCAATTGTATGAGGTATCGATCTaGAGTGGTCCCATTCTTTGC +
Preference number: 5 (lower is better)
Translates to: LMGIQVLTALGVGWSPQLYEVSI*SGPILC
Trigger: GCAAAGAATGGGACCACTCAAGATCGATACCTCATA...CAATTGGGGGCTCCAGCCCACTCCCAATGCAGTCAATACTTGAATTCCCATCAA
48% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000026296.8
ENSMUST00000112685.8
CDS-3UTR CAA 90 bp TTGATGGGAATTCAAGTATTGACTGCATTGGGAGTGGGCTGGAGCCCCCAATTGGTTGAGTTCAACAGTTaGAAAGTCTCCAGGGTCTGT +
Preference number: 5 (lower is better)
Translates to: LMGIQVLTALGVGWSPQLVEFNS*KVSRVC
Trigger: ACAGACCCTGGAGACTTTCAAACTGTTGAACTCAAC...CAATTGGGGGCTCCAGCCCACTCCCAATGCAGTCAATACTTGAATTCCCATCAA
48% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000026296.8
ENSMUST00000112685.8
CDS-3UTR CAA 90 bp GACCCAGCATTCGGGATTGAAAGTGCCCTTGATGGGAATTCAAGTATTGACTGCTATGAGGTATCGATCTaGAGTGGTCCCATTCTTTGC +
Preference number: 5 (lower is better)
Translates to: DPAFGIESALDGNSSIDCYEVSI*SGPILC
Trigger: GCAAAGAATGGGACCACTCAAGATCGATACCTCATA...GCAGTCAATACTTGAATTCCCATCAAGGGCACTTTCAATCCCGAATGCTGGGTC
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000026296.8
ENSMUST00000112685.8
CDS TCA 90 bp CACGTTTGGAGAGTTAGGGGGAGTATCTTCATCATCCCTGTTTGTTaGGTTCAACAGTTTGAAAGTCTCCAGGGTCTGTTCATGCTTCAG +
Preference number: 5 (lower is better)
Translates to: HVWRVRGSIFIIPVC*VQQFESLQGLFMLQ
Trigger: CTGAAGCATGAACAGACCCTGGAGACTTTCAAACTGTTGAACTCAACAAACAGGGATGATGAAGATACTCCCCCTAACTCTCCAAACGTG
46% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000026296.8
ENSMUST00000112685.8
CDS-3UTR CAA 90 bp TTCGGGATTGAAAGTGCCCTTGATGGGAATTCAAGTATTGACTGCATTGGGAGTGTTTGCAGGAGCTCATaGGCAATATGGAACACCTTC +
Preference number: 5 (lower is better)
Translates to: FGIESALDGNSSIDCIGSVCRSS*AIWNTF
Trigger: GAAGGTGTTCCATATTGCCAATGAGCTCCTGCAAAC...ACTCCCAATGCAGTCAATACTTGAATTCCCATCAAGGGCACTTTCAATCCCGAA
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000026296.8
ENSMUST00000112685.8
CDS-3UTR CAA 90 bp TTCGGGATTGAAAGTGCCCTTGATGGGAATTCAAGTATTGACTGCATTGGGAGTTGGCTTTGTGTGATCTaGAAGACATGCCTCCTGTCT +
Preference number: 5 (lower is better)
Translates to: FGIESALDGNSSIDCIGSWLCVI*KTCLLS
Trigger: AGACAGGAGGCATGTCTTCAAGATCACACAAAGCCA...ACTCCCAATGCAGTCAATACTTGAATTCCCATCAAGGGCACTTTCAATCCCGAA
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000026296.8
ENSMUST00000112685.8
CDS-3UTR CAA 90 bp TGGATCTGGACGATAAAATACTGGATTGCTTTGGGGCTAGGTAGAAGCTATAAGTACACCTTCAGCAGCTaGTGCATTCGTTCCATTTTC +
Preference number: 5 (lower is better)
Translates to: WIWTIKYWIALGLGRSYKYTFSS*CIRSIF
Trigger: GAAAATGGAACGAATGCACAAGCTGCTGAAGGTGTA...CTTATAGCTTCTACCTAGCCCCAAAGCAATCCAGTATTTTATCGTCCAGATCCA
43% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 2 transcripts:
ENSMUST00000026296.8
ENSMUST00000112685.8
CDS CAA 72 bp AGTCGGCACAGGCCAGCGGAGCGGCACCGGGGGTATTaGCCGCTGAGCGTTCGGGATCCGAAGGCCCAGGGC +
Preference number: 6 (lower is better)
Translates to: SRHRPAERHRGY*PLSVRDPKAQG
Trigger: GCCCTGGGCCTTCGGATCCCGAACGCTCAGCGGCAAATACCCCCGGTGCCGCTCCGCTGGCCTGTGCCGACT
71% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000026296.8
CDS GCA 72 bp GATCCAAAGGGCCTCCAAGAGCCGTGCCTGAGCCCCTaGTCACCGGCAGCCCGGGTTCCAAGGCTCCAGGGT +
Preference number: 6 (lower is better)
Translates to: DPKGLQEPCLSP*SPAARVPRLQG
Trigger: ACCCTGGAGCCTTGGAACCCGGGCTGCCGGTGAGCAGGGGCTCAGGCACGGCTCTTGGAGGCCCTTTGGATC
68% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000026296.8
CDS GCA 72 bp TGGGCCCTGGGCAGAATGTGTCCCCACGGCCCGCCCTaGCGAGAACAGCCATCCAGCGCCGCTGGAGTTCTT +
Preference number: 6 (lower is better)
Translates to: WALGRMCPHGPP*REQPSSAAGVL
Trigger: AAGAACTCCAGCGGCGCTGGATGGCTGTTCTCGGCAGGGCGGGCCGTGGGGACACATTCTGCCCAGGGCCCA
68% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000026296.8
ENSMUST00000112685.8
CDS CCA 72 bp CAGGAGGAGGAAGCACCCGGGGCATCTGCAGGTAGCTaGGCTTTGGGGGAACCTGTGGCTTTGGGCCCGGTG +
Preference number: 6 (lower is better)
Translates to: QEEEAPGASAGS*ALGEPVALGPV
Trigger: CACCGGGCCCAAAGCCACAGGTTCCCCCAAAGCCCAGCTACCTGCAGATGCCCCGGGTGCTTCCTCCTCCTG
67% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000026296.8
CDS CCA 72 bp CTCCTCCATCTCCTTGTCCTCAGACAGTGTGGGCCCTaGGCAGAATGTGTCCCCACGGCCCGCCCTGCCGAG +
Preference number: 6 (lower is better)
Translates to: LLHLLVLRQCGP*AECVPTARPAE
Trigger: CTCGGCAGGGCGGGCCGTGGGGACACATTCTGCCCAGGGCCCACACTGTCTGAGGACAAGGAGATGGAGGAG
67% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000026296.8
ENSMUST00000112685.8
CDS TCA 72 bp AAACTGAGGATCCAAAGGGCCTCCAAGAGCCGTGCCTaGGCCCCTGCTCACCGGCAGCCCGGGTTCCAAGGC +
Preference number: 6 (lower is better)
Translates to: KLRIQRASKSRA*APAHRQPGFQG
Trigger: GCCTTGGAACCCGGGCTGCCGGTGAGCAGGGGCTCAGGCACGGCTCTTGGAGGCCCTTTGGATCCTCAGTTT
65% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000026296.8
CDS CCA 72 bp AGGAACAGGCAGCGAGAAGCTTCACCCTCAGGGAGCTaGGACCCTGTTGGCTGCGGGGGTGGCTGTGGCAAC +
Preference number: 6 (lower is better)
Translates to: RNRQREASPSGS*DPVGCGGGCGN
Trigger: GTTGCCACAGCCACCCCCGCAGCCAACAGGGTCCCAGCTCCCTGAGGGTGAAGCTTCTCGCTGCCTGTTCCT
65% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000026296.8
ENSMUST00000112685.8
CDS CCA 72 bp CTGGTGTCTCCTCCATCTCCTTGTCCTCAGACAGTGTaGGCCCTGGGCAGAATGTGTCCCCACGGCCCGCCC +
Preference number: 6 (lower is better)
Translates to: LVSPPSPCPQTV*ALGRMCPHGPP
Trigger: GGGCGGGCCGTGGGGACACATTCTGCCCAGGGCCCACACTGTCTGAGGACAAGGAGATGGAGGAGACACCAG
65% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000026296.8
ENSMUST00000112685.8
CDS CCA 72 bp TCCAGGTCACTGTCAACCTCCTGGGAGCCAGGCCGGTaGGGGTCGGCCAAAGCTACTGGCATACTAGCCAGG +
Preference number: 6 (lower is better)
Translates to: SRSLSTSWEPGR*GSAKATGILAR
Trigger: CCTGGCTAGTATGCCAGTAGCTTTGGCCGACCCCCACCGGCCTGGCTCCCAGGAGGTTGACAGTGACCTGGA
64% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000026296.8
ENSMUST00000112685.8
CDS CCA 72 bp CGGCCCGCCCTGCCGAGAACAGCCATCCAGCGCCGCTaGAGTTCTTCTGTCTCTGGGCTGAAGTACCAGCTT +
Preference number: 6 (lower is better)
Translates to: RPALPRTAIQRR*SSSVSGLKYQL
Trigger: AAGCTGGTACTTCAGCCCAGAGACAGAAGAACTCCAGCGGCGCTGGATGGCTGTTCTCGGCAGGGCGGGCCG
64% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000026296.8
ENSMUST00000112685.8
CDS CAA 90 bp ACTGCTGCAGAACTAGTGCTGGCCTCAGCTCTGGGGACGAGTCCCTaGGCCACTCTAGGGTCTGCAGGCAGAGGGCGTGATGGTGGTGGA +
Preference number: 6 (lower is better)
Translates to: TAAELVLASALGTSP*ATLGSAGRGRDGGG
Trigger: TCCACCACCATCACGCCCTCTGCCTGCAGACCCTAGAGTGGCCAAGGGACTCGTCCCCAGAGCTGAGGCCAGCACTAGTTCTGCAGCAGT
62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000026296.8
ENSMUST00000112685.8
CDS GCA 72 bp CAGCGACCGAGGCCTGTTTCTCTAGGATGGACCTCCTaGGCTGGGGTGTATGCTGGCTACAGGCTGGACTGC +
Preference number: 6 (lower is better)
Translates to: QRPRPVSLGWTS*AGVYAGYRLDC
Trigger: GCAGTCCAGCCTGTAGCCAGCATACACCCCAGCGCAGGAGGTCCATCCTAGAGAAACAGGCCTCGGTCGCTG
62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000026296.8
ENSMUST00000112685.8
CDS CAA 72 bp GAACTAGTGCTGGCCTCAGCTCTGGGGACGAGTCCCTaGGCCACTCTAGGGTCTGCAGGCAGAGGGCGTGAT +
Preference number: 6 (lower is better)
Translates to: ELVLASALGTSP*ATLGSAGRGRD
Trigger: ATCACGCCCTCTGCCTGCAGACCCTAGAGTGGCCAAGGGACTCGTCCCCAGAGCTGAGGCCAGCACTAGTTC
62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000026296.8
ENSMUST00000112685.8
CDS CCA 72 bp ACCGAGGCCTGTTTCTCTAGGATGGACCTCCTGCGCTaGGGTGTATGCTGGCTACAGGCTGGACTGCTCCCA +
Preference number: 6 (lower is better)
Translates to: TEACFSRMDLLR*GVCWLQAGLLP
Trigger: TGGGAGCAGTCCAGCCTGTAGCCAGCATACACCCCAGCGCAGGAGGTCCATCCTAGAGAAACAGGCCTCGGT
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000026296.8
ENSMUST00000112685.8
CDS GCA 72 bp AGAAGATGCCGTGGACAACATCTGCGGGGAAGGAACTaGGGTTCCGAGCTTCTTCCAGCAGCCGGGCACAGA +
Preference number: 6 (lower is better)
Translates to: RRCRGQHLRGRN*GSELLPAAGHR
Trigger: TCTGTGCCCGGCTGCTGGAAGAAGCTCGGAACCGCAGTTCCTTCCCCGCAGATGTTGTCCACGGCATCTTCT
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000026296.8
ENSMUST00000112685.8
CDS GCA 72 bp TACCAGCTTAGGTGGCTTTGTGTGATCTTGAAGACATaGCTCCTGTCTGGCCGCTCTCCTGCCTCAGGAGGC +
Preference number: 6 (lower is better)
Translates to: YQLRWLCVILKT*LLSGRSPASGG
Trigger: GCCTCCTGAGGCAGGAGAGCGGCCAGACAGGAGGCATGTCTTCAAGATCACACAAAGCCACCTAAGCTGGTA
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000026296.8
ENSMUST00000112685.8
CDS CAA 72 bp GGCCCATCATCACTGACGAAGCAGGTCTCTTCACTGTaGGATGGCGAGCTGATGCTGTCAATGCCGCTGTCC +
Preference number: 6 (lower is better)
Translates to: GPSSLTKQVSSL*DGELMLSMPLS
Trigger: GGACAGCGGCATTGACAGCATCAGCTCGCCATCCAACAGTGAAGAGACCTGCTTCGTCAGTGATGATGGGCC
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000026296.8
ENSMUST00000112685.8
CDS GCA 72 bp GGAGCAGATGTTAGAGAAGATGCCGTGGACAACATCTaGGGGGAAGGAACTGCGGTTCCGAGCTTCTTCCAG +
Preference number: 6 (lower is better)
Translates to: GADVREDAVDNI*GEGTAVPSFFQ
Trigger: CTGGAAGAAGCTCGGAACCGCAGTTCCTTCCCCGCAGATGTTGTCCACGGCATCTTCTCTAACATCTGCTCC
56% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000026296.8
ENSMUST00000112685.8
CDS GCA 72 bp CTGTGGCTATCAGCTCCAAAGACTTCTGGGCATCCTTaGTGTCCGGGGAGCCATGAGGCAGCTTTAACAGAT +
Preference number: 6 (lower is better)
Translates to: LWLSAPKTSGHP*CPGSHEAALTD
Trigger: ATCTGTTAAAGCTGCCTCATGGCTCCCCGGACAGCAAGGATGCCCAGAAGTCTTTGGAGCTGATAGCCACAG
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000026296.8
ENSMUST00000112685.8
CDS GCA 72 bp GCACATGGTGACTTCCTTTTCCCGGATAGGCGTAGGTaGCCTCTTCCCAAGATCCACGTTTGGAGAGTTAGG +
Preference number: 6 (lower is better)
Translates to: AHGDFLFPDRRR*PLPKIHVWRVR
Trigger: CCTAACTCTCCAAACGTGGATCTTGGGAAGAGGGCACCTACGCCTATCCGGGAAAAGGAAGTCACCATGTGC
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000026296.8
ENSMUST00000112685.8
CDS GCA 72 bp GAGTTCAACAGTTTGAAAGTCTCCAGGGTCTGTTCATaGTTCAGGAGGGTGGAATTGATGGCCTGGACCCAG +
Preference number: 6 (lower is better)
Translates to: EFNSLKVSRVCS*FRRVELMAWTQ
Trigger: CTGGGTCCAGGCCATCAATTCCACCCTCCTGAAGCATGAACAGACCCTGGAGACTTTCAAACTGTTGAACTC
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000026296.8
ENSMUST00000112685.8
CDS CCA 72 bp GATAGGCGTAGGTGCCCTCTTCCCAAGATCCACGTTTaGAGAGTTAGGGGGAGTATCTTCATCATCCCTGTT +
Preference number: 6 (lower is better)
Translates to: DRRRCPLPKIHV*RVRGSIFIIPV
Trigger: AACAGGGATGATGAAGATACTCCCCCTAACTCTCCAAACGTGGATCTTGGGAAGAGGGCACCTACGCCTATC
51% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000026296.8
ENSMUST00000112685.8
CDS CAA 72 bp TCCTCACCCCCTAGCAGCTCATACACCTTCAGCAGCTaGTGCATTCGTTCCATTTTCCGGATGGCAGCATTA +
Preference number: 6 (lower is better)
Translates to: SSPPSSSYTFSS*CIRSIFRMAAL
Trigger: TAATGCTGCCATCCGGAAAATGGAACGAATGCACAAGCTGCTGAAGGTGTATGAGCTGCTAGGGGGTGAGGA
51% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000026296.8
ENSMUST00000112685.8
CDS CAA 72 bp GACAGCTTAAGGATATGGCCTTCCTTTATGAGCTCTTaGGTGGGACTGACAATGTCCTCCTCACCCCCTAGC +
Preference number: 6 (lower is better)
Translates to: DSLRIWPSFMSS*VGLTMSSSPPS
Trigger: GCTAGGGGGTGAGGAGGACATTGTCAGTCCCACCAAAGAGCTCATAAAGGAAGGCCATATCCTTAAGCTGTC
51% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000026296.8
ENSMUST00000112685.8
CDS CAA 72 bp TTTCCTGACACCAGGAAGGTCCGAGGCATGTTGAGGTaGGAGCTCTCCTTTAGCTCCATGCCATCTACATCA +
Preference number: 6 (lower is better)
Translates to: FPDTRKVRGMLR*ELSFSSMPSTS
Trigger: TGATGTAGATGGCATGGAGCTAAAGGAGAGCTCCAACCTCAACATGCCTCGGACCTTCCTGGTGTCAGGAAA
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000026296.8
ENSMUST00000112685.8
CDS CAA 72 bp ATGACTTTAAACTGGGTAGACCGCTCTGTCCATGTGTaGACCAGCTCTACCGCCCGGTCGAAGTTTTTCACA +
Preference number: 6 (lower is better)
Translates to: MTLNWVDRSVHV*TSSTARSKFFT
Trigger: TGTGAAAAACTTCGACCGGGCGGTAGAGCTGGTCAACACATGGACAGAGCGGTCTACCCAGTTTAAAGTCAT
50% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000026296.8
ENSMUST00000112685.8
CDS CAA 90 bp TTCTTTGCTGACAGCTTAAGGATATGGCCTTCCTTTATGAGCTCTTaGGTGGGACTGACAATGTCCTCCTCACCCCCTAGCAGCTCATAC +
Preference number: 6 (lower is better)
Translates to: FFADSLRIWPSFMSS*VGLTMSSSPPSSSY
Trigger: GTATGAGCTGCTAGGGGGTGAGGAGGACATTGTCAGTCCCACCAAAGAGCTCATAAAGGAAGGCCATATCCTTAAGCTGTCAGCAAAGAA
49% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000026296.8
ENSMUST00000112685.8
CDS CCA 72 bp AGTTCTTCTGTCTCTGGGCTGAAGTACCAGCTTAGGTaGCTTTGTGTGATCTTGAAGACATGCCTCCTGTCT +
Preference number: 6 (lower is better)
Translates to: SSSVSGLKYQLR*LCVILKTCLLS
Trigger: AGACAGGAGGCATGTCTTCAAGATCACACAAAGCCACCTAAGCTGGTACTTCAGCCCAGAGACAGAAGAACT
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000026296.8
ENSMUST00000112685.8
CDS CCA 72 bp TCCTCCTTCTGTACTTCATGGATGATGACTTTAAACTaGGTAGACCGCTCTGTCCATGTGTTGACCAGCTCT +
Preference number: 6 (lower is better)
Translates to: SSFCTSWMMTLN*VDRSVHVLTSS
Trigger: AGAGCTGGTCAACACATGGACAGAGCGGTCTACCCAGTTTAAAGTCATCATCCATGAAGTACAGAAGGAGGA
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000026296.8
ENSMUST00000112685.8
CDS TCA 72 bp TATGAGGTATCGATCTTGAGTGGTCCCATTCTTTGCTaGCAGCTTAAGGATATGGCCTTCCTTTATGAGCTC +
Preference number: 6 (lower is better)
Translates to: YEVSILSGPILC*QLKDMAFLYEL
Trigger: GAGCTCATAAAGGAAGGCCATATCCTTAAGCTGTCAGCAAAGAATGGGACCACTCAAGATCGATACCTCATA
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000026296.8
ENSMUST00000112685.8
CDS TCA 72 bp AGGAGGCGGTCGTTGAATAATATGAGGTATCGATCTTaGGTGGTCCCATTCTTTGCTGACAGCTTAAGGATA +
Preference number: 6 (lower is better)
Translates to: RRRSLNNMRYRS*VVPFFADSLRI
Trigger: TATCCTTAAGCTGTCAGCAAAGAATGGGACCACTCAAGATCGATACCTCATATTATTCAACGACCGCCTCCT
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000026296.8
ENSMUST00000112685.8
CDS TCA 72 bp TATCTTCATCATCCCTGTTTGTTGAGTTCAACAGTTTaGAAGTCTCCAGGGTCTGTTCATGCTTCAGGAGGG +
Preference number: 6 (lower is better)
Translates to: YLHHPCLLSSTV*KSPGSVHASGG
Trigger: CCCTCCTGAAGCATGAACAGACCCTGGAGACTTTCAAACTGTTGAACTCAACAAACAGGGATGATGAAGATA
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000026296.8
ENSMUST00000112685.8
CDS TCA 72 bp AGAGTTAGGGGGAGTATCTTCATCATCCCTGTTTGTTaGGTTCAACAGTTTGAAAGTCTCCAGGGTCTGTTC +
Preference number: 6 (lower is better)
Translates to: RVRGSIFIIPVC*VQQFESLQGLF
Trigger: GAACAGACCCTGGAGACTTTCAAACTGTTGAACTCAACAAACAGGGATGATGAAGATACTCCCCCTAACTCT
44% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000026296.8
ENSMUST00000112685.8