Pregenerated sensors for FFAR4 (Mus musculus)
Ensembl gene IDs: ENSMUSG00000054200Ensembl transcript IDs: ENSMUST00000067098.8
Found 57 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR-3UTR CAA 90 bp | ATACTGAGCGATCATTCCTTAATTTGCTGGCTCCGTAGATGCCTGCTGTTGGAAACTGGTGGGCTTTCCTaGAAGTTAACTCCCTTTACA | + |
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Preference number: 3 (lower is better) Translates to: ILSDHSLICWLRRCLLLETGGLS*KLTPFT Trigger: TGTAAAGGGAGTTAACTTCAAGGAAAGCCCACCAGT...TTCCAACAGCAGGCATCTACGGAGCCAGCAAATTAAGGAATGATCGCTCAGTAT 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000067098.8 |
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| 3UTR GCA 72 bp | AAAAATATTTTTATACTGAGCGATCATTCCTTAATTTaGTGGCTCCGTAGATGCCTGCTGTTGGAAGTCGGG | + |
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Preference number: 3 (lower is better) Translates to: KNIFILSDHSLI*WLRRCLLLEVG Trigger: CCCGACTTCCAACAGCAGGCATCTACGGAGCCAGCAAATTAAGGAATGATCGCTCAGTATAAAAATATTTTT 42% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt. Matches the following 1 transcripts: ENSMUST00000067098.8 |
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| CDS-3UTR GCA 90 bp | ATTTTTAAAGCAGGGCGCACTGGTGGGCTTTCCTTGAAGTTAACTCCCTTTACAACTTGGTCCAGGGTGTaGGAGGGGCCAGGGCCCGTC | + |
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Preference number: 4 (lower is better) Translates to: IFKAGRTGGLSLKLTPFTTWSRV*EGPGPV Trigger: GACGGGCCCTGGCCCCTCGCACACCCTGGACCAAGT...TGTAAAGGGAGTTAACTTCAAGGAAAGCCCACCAGTGCGCCCTGCTTTAAAAAT 54% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000067098.8 |
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| CDS-3UTR GCA 90 bp | ATTTTTAAAGCAGGGCGCACTGGTGGGCTTTCCTTGAAGTTAACTCCCTTTACAGCCGGAGGCGCACGATaGACACCATGCGCTCCAGGC | + |
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Preference number: 4 (lower is better) Translates to: IFKAGRTGGLSLKLTPFTAGGAR*TPCAPG Trigger: GCCTGGAGCGCATGGTGTGCATCGTGCGCCTCCGGC...TGTAAAGGGAGTTAACTTCAAGGAAAGCCCACCAGTGCGCCCTGCTTTAAAAAT 54% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000067098.8 |
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| CDS-3UTR TCA 90 bp | ATTTTTAAAGCAGGGCGCACTGGTGGGCTTTCCTTGAAGTTAACTCCCTTTACACCGCGCAGAAGAGGTTaGGCACCAGGCTGGCTGTCG | + |
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Preference number: 4 (lower is better) Translates to: IFKAGRTGGLSLKLTPFTPRRRG*APGWLS Trigger: CGACAGCCAGCCTGGTGCTCAACCTCTTCTGCGCGG...TGTAAAGGGAGTTAACTTCAAGGAAAGCCCACCAGTGCGCCCTGCTTTAAAAAT 53% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000067098.8 |
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| CDS-3UTR CCA 90 bp | TCGGGTATTTTTAAAGCAGGGCGCACTGGTGGGCTTTCCTTGAAGTTAACTCCCCTCAACACCAACCGGTaGTCGCCCTTGACATCCGAG | + |
|
Preference number: 4 (lower is better) Translates to: SGIFKAGRTGGLSLKLTPLNTNR*SPLTSE Trigger: CTCGGATGTCAAGGGCGACCACCGGTTGGTGTTGAG...GGGAGTTAACTTCAAGGAAAGCCCACCAGTGCGCCCTGCTTTAAAAATACCCGA 53% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000067098.8 |
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| CDS-3UTR CCA 90 bp | TCGGGTATTTTTAAAGCAGGGCGCACTGGTGGGCTTTCCTTGAAGTTAACTCCCTGGGACACTCGGATCTaGTGGCTCTCAGAGTATGCC | + |
|
Preference number: 4 (lower is better) Translates to: SGIFKAGRTGGLSLKLTPWDTRI*WLSEYA Trigger: GGCATACTCTGAGAGCCACCAGATCCGAGTGTCCCA...GGGAGTTAACTTCAAGGAAAGCCCACCAGTGCGCCCTGCTTTAAAAATACCCGA 52% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000067098.8 |
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| CDS-3UTR CCA 90 bp | GCGCACTGGTGGGCTTTCCTTGAAGTTAACTCCCTTTACATGCACACCGTGGTTCCAGAAGAAAAGGGATaGCCAGATGACCAGGTCCTG | + |
|
Preference number: 4 (lower is better) Translates to: AHWWAFLEVNSLYMHTVVPEEKG*PDDQVL Trigger: CAGGACCTGGTCATCTGGCCATCCCTTTTCTTCTGG...AACCACGGTGTGCATGTAAAGGGAGTTAACTTCAAGGAAAGCCCACCAGTGCGC 52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000067098.8 |
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| CDS-3UTR TCA 90 bp | ATACTGAGCGATCATTCCTTAATTTGCTGGCTCCGTAGATGCCTGCTGTTGGAAACCGGTGGTCGCCCTTaGCATCCGAGAAGAAAGGGA | + |
|
Preference number: 4 (lower is better) Translates to: ILSDHSLICWLRRCLLLETGGRP*HPRRKG Trigger: TCCCTTTCTTCTCGGATGTCAAGGGCGACCACCGGT...TTCCAACAGCAGGCATCTACGGAGCCAGCAAATTAAGGAATGATCGCTCAGTAT 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000067098.8 |
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| CDS-3UTR TCA 90 bp | ATTTTTAAAGCAGGGCGCACTGGTGGGCTTTCCTTGAAGTTAACTCCCTTTACACACGTTGCCCAGCAGTaGGACGACAAAGATGAGCCC | + |
|
Preference number: 4 (lower is better) Translates to: IFKAGRTGGLSLKLTPFTHVAQQ*DDKDEP Trigger: GGGCTCATCTTTGTCGTCTCACTGCTGGGCAACGTG...TGTAAAGGGAGTTAACTTCAAGGAAAGCCCACCAGTGCGCCCTGCTTTAAAAAT 50% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000067098.8 |
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| CDS-3UTR TCA 90 bp | ATACTGAGCGATCATTCCTTAATTTGCTGGCTCCGTAGATGCCTGCTGTTGGAACAGAGTTGGCAAACGTaGAGGCCACCACCCAGAAGA | + |
|
Preference number: 4 (lower is better) Translates to: ILSDHSLICWLRRCLLLEQSWQT*RPPPRR Trigger: TCTTCTGGGTGGTGGCCTTCACGTTTGCCAACTCTG...TTCCAACAGCAGGCATCTACGGAGCCAGCAAATTAAGGAATGATCGCTCAGTAT 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000067098.8 |
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| CDS-3UTR CCA 90 bp | TCGGGTATTTTTAAAGCAGGGCGCACTGGTGGGCTTTCCTTGAAGTTAACTCCCGAGAAGAAAGGGAAGTaGGTGCGATTGACTTGGTCC | + |
|
Preference number: 4 (lower is better) Translates to: SGIFKAGRTGGLSLKLTPEKKGK*VRLTWS Trigger: GGACCAAGTCAATCGCACCCACTTCCCTTTCTTCTC...GGGAGTTAACTTCAAGGAAAGCCCACCAGTGCGCCCTGCTTTAAAAATACCCGA 50% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000067098.8 |
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| CDS-3UTR GCA 90 bp | GCGCACTGGTGGGCTTTCCTTGAAGTTAACTCCCTTTACATGCACACCGTGGTTTGGGCCAATCCAATGTaGAAATCGGAATTTCCTGGT | + |
|
Preference number: 4 (lower is better) Translates to: AHWWAFLEVNSLYMHTVVWANPM*KSEFPG Trigger: ACCAGGAAATTCCGATTTGCACATTGGATTGGCCCA...AACCACGGTGTGCATGTAAAGGGAGTTAACTTCAAGGAAAGCCCACCAGTGCGC 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000067098.8 |
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| CDS-3UTR GCA 90 bp | ATACTGAGCGATCATTCCTTAATTTGCTGGCTCCGTAGATGCCTGCTGTTGGAAGTGGCTCTCAGAGTATaGCAAGCTCAGCGTAAGCCT | + |
|
Preference number: 4 (lower is better) Translates to: ILSDHSLICWLRRCLLLEVALRV*QAQRKP Trigger: AGGCTTACGCTGAGCTTGGCATACTCTGAGAGCCAC...TTCCAACAGCAGGCATCTACGGAGCCAGCAAATTAAGGAATGATCGCTCAGTAT 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000067098.8 |
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| CDS-3UTR GCA 90 bp | ATTTTTAAAGCAGGGCGCACTGGTGGGCTTTCCTTGAAGTTAACTCCCTTTACACTAGAGCACACACGTTaGCCAGCAGTGAGACGACAA | + |
|
Preference number: 4 (lower is better) Translates to: IFKAGRTGGLSLKLTPFTLEHTR*PAVRRQ Trigger: TTGTCGTCTCACTGCTGGGCAACGTGTGTGCTCTAG...TGTAAAGGGAGTTAACTTCAAGGAAAGCCCACCAGTGCGCCCTGCTTTAAAAAT 48% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000067098.8 |
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| CDS-3UTR CCA 90 bp | ATTTTTAAAGCAGGGCGCACTGGTGGGCTTTCCTTGAAGTTAACTCCCTTTACAGACACTCGGATCTGGTaGCTCTCAGAGTATGCCAAG | + |
|
Preference number: 4 (lower is better) Translates to: IFKAGRTGGLSLKLTPFTDTRIW*LSEYAK Trigger: CTTGGCATACTCTGAGAGCCACCAGATCCGAGTGTC...TGTAAAGGGAGTTAACTTCAAGGAAAGCCCACCAGTGCGCCCTGCTTTAAAAAT 48% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000067098.8 |
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| CDS-3UTR CCA 90 bp | TTTATACTGAGCGATCATTCCTTAATTTGCTGGCTCCGTAGATGCCTGCTGTTGTCCTGCCGGAAGTTTTaGATCAAGATGAGGAGGATG | + |
|
Preference number: 4 (lower is better) Translates to: FILSDHSLICWLRRCLLLSCRKF*IKMRRM Trigger: CATCCTCCTCATCTTGATCCAAAACTTCCGGCAGGA...CAACAGCAGGCATCTACGGAGCCAGCAAATTAAGGAATGATCGCTCAGTATAAA 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000067098.8 |
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| CDS-3UTR CCA 90 bp | ATTTTTAAAGCAGGGCGCACTGGTGGGCTTTCCTTGAAGTTAACTCCCTTTACAACATGTTGTACAGTATaGGGTTTAGGGCAGAGTTGG | + |
|
Preference number: 4 (lower is better) Translates to: IFKAGRTGGLSLKLTPFTTCCTV*GLGQSW Trigger: CCAACTCTGCCCTAAACCCCATACTGTACAACATGT...TGTAAAGGGAGTTAACTTCAAGGAAAGCCCACCAGTGCGCCCTGCTTTAAAAAT 44% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000067098.8 |
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| CDS-3UTR TCA 90 bp | TTTATACTGAGCGATCATTCCTTAATTTGCTGGCTCCGTAGATGCCTGCTGTTGTCCGCGATGCTTTCGTaGTCTGTAAAATTTTGGAGT | + |
|
Preference number: 4 (lower is better) Translates to: FILSDHSLICWLRRCLLLSAMLS*SVKFWS Trigger: ACTCCAAAATTTTACAGATCACGAAAGCATCGCGGA...CAACAGCAGGCATCTACGGAGCCAGCAAATTAAGGAATGATCGCTCAGTATAAA 43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000067098.8 |
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| CDS CCA 90 bp | TCGCCCTTGACATCCGAGAAGAAAGGGAAGTGGGTGCGATTGACTTaGTCCAGGGTGTGCGAGGGGCCAGGGCCCGTCGTCTGTGCACAC | + |
|
Preference number: 5 (lower is better) Translates to: SPLTSEKKGKWVRLT*SRVCEGPGPVVCAH Trigger: GTGTGCACAGACGACGGGCCCTGGCCCCTCGCACACCCTGGACCAAGTCAATCGCACCCACTTCCCTTTCTTCTCGGATGTCAAGGGCGA 62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000067098.8 |
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| CDS CCA 90 bp | AACACCAACCGGTGGTCGCCCTTGACATCCGAGAAGAAAGGGAAGTaGGTGCGATTGACTTGGTCCAGGGTGTGCGAGGGGCCAGGGCCC | + |
|
Preference number: 5 (lower is better) Translates to: NTNRWSPLTSEKKGK*VRLTWSRVCEGPGP Trigger: GGGCCCTGGCCCCTCGCACACCCTGGACCAAGTCAATCGCACCCACTTCCCTTTCTTCTCGGATGTCAAGGGCGACCACCGGTTGGTGTT 62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000067098.8 |
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| CDS CCA 90 bp | TCTCCTATGCGGTTGGGCCAATCCAATGTGCAAATCGGAATTTCCTaGTCCCCGCCGGGAAGGCGCTGCGGGACCACGCGGAACAAGATG | + |
|
Preference number: 5 (lower is better) Translates to: SPMRLGQSNVQIGIS*SPPGRRCGTTRNKM Trigger: CATCTTGTTCCGCGTGGTCCCGCAGCGCCTTCCCGGCGGGGACCAGGAAATTCCGATTTGCACATTGGATTGGCCCAACCGCATAGGAGA 60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000067098.8 |
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| CDS TCA 90 bp | CCAGCACTAGAGCACACACGTTGCCCAGCAGTGAGACGACAAAGATaGGCCCCAGAACGGTGGTCTCCACGACGCTCAACACCAACCGGT | + |
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Preference number: 5 (lower is better) Translates to: PALEHTRCPAVRRQR*APERWSPRRSTPTG Trigger: ACCGGTTGGTGTTGAGCGTCGTGGAGACCACCGTTCTGGGGCTCATCTTTGTCGTCTCACTGCTGGGCAACGTGTGTGCTCTAGTGCTGG 59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000067098.8 |
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| CDS-3UTR CAA 90 bp | GCGCACTGGTGGGCTTTCCTTGAAGTTAACTCCCTTTACATGCACACCGTGGTTTCCGCGCAGAAGAGGTaGAGCACCAGGCTGGCTGTC | + |
|
Preference number: 5 (lower is better) Translates to: AHWWAFLEVNSLYMHTVVSAQKR*STRLAV Trigger: GACAGCCAGCCTGGTGCTCAACCTCTTCTGCGCGGA...AACCACGGTGTGCATGTAAAGGGAGTTAACTTCAAGGAAAGCCCACCAGTGCGC 57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000067098.8 |
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| CDS GCA 90 bp | TCGGTAGTCTTGTTGGGACACTCGGATCTGGTGGCTCTCAGAGTATaGCAAGCTCAGCGTAAGCCTCTTCCGCGATGCTTTCGTGATCTG | + |
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Preference number: 5 (lower is better) Translates to: SVVLLGHSDLVALRV*QAQRKPLPRCFRDL Trigger: CAGATCACGAAAGCATCGCGGAAGAGGCTTACGCTGAGCTTGGCATACTCTGAGAGCCACCAGATCCGAGTGTCCCAACAAGACTACCGA 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000067098.8 |
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| CDS CCA 90 bp | GGCAGAGTTGGCAAACGTGAAGGCCACCACCCAGAAGAAAAGGGATaGCCAGATGACCAGGTCCTGCCGGAAGTTTTGGATCAAGATGAG | + |
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Preference number: 5 (lower is better) Translates to: GRVGKREGHHPEEKG*PDDQVLPEVLDQDE Trigger: CTCATCTTGATCCAAAACTTCCGGCAGGACCTGGTCATCTGGCCATCCCTTTTCTTCTGGGTGGTGGCCTTCACGTTTGCCAACTCTGCC 54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000067098.8 |
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| CDS-3UTR CAA 90 bp | GCGCACTGGTGGGCTTTCCTTGAAGTTAACTCCCTTTACATGCACACCGTGGTTGTCCTGCCGGAAGTTTaGGATCAAGATGAGGAGGAT | + |
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Preference number: 5 (lower is better) Translates to: AHWWAFLEVNSLYMHTVVVLPEV*DQDEED Trigger: ATCCTCCTCATCTTGATCCAAAACTTCCGGCAGGAC...AACCACGGTGTGCATGTAAAGGGAGTTAACTTCAAGGAAAGCCCACCAGTGCGC 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000067098.8 |
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| CDS-3UTR CAA 90 bp | ATTTTTAAAGCAGGGCGCACTGGTGGGCTTTCCTTGAAGTTAACTCCCTTTACAAACCGGTGGTCGCCCTaGACATCCGAGAAGAAAGGG | + |
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Preference number: 5 (lower is better) Translates to: IFKAGRTGGLSLKLTPFTNRWSP*TSEKKG Trigger: CCCTTTCTTCTCGGATGTCAAGGGCGACCACCGGTT...TGTAAAGGGAGTTAACTTCAAGGAAAGCCCACCAGTGCGCCCTGCTTTAAAAAT 50% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000067098.8 |
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| CDS-3UTR CAA 90 bp | ATACTGAGCGATCATTCCTTAATTTGCTGGCTCCGTAGATGCCTGCTGTTGGAAGAGTCGGTAGTCTTGTaGGGACACTCGGATCTGGTG | + |
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Preference number: 5 (lower is better) Translates to: ILSDHSLICWLRRCLLLEESVVL*GHSDLV Trigger: CACCAGATCCGAGTGTCCCAACAAGACTACCGACTC...TTCCAACAGCAGGCATCTACGGAGCCAGCAAATTAAGGAATGATCGCTCAGTAT 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000067098.8 |
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| CDS-3UTR CAA 90 bp | TTTATACTGAGCGATCATTCCTTAATTTGCTGGCTCCGTAGATGCCTGCTGTTGGGGTTTAGGGCAGAGTaGGCAAACGTGAAGGCCACC | + |
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Preference number: 5 (lower is better) Translates to: FILSDHSLICWLRRCLLLGFRAE*ANVKAT Trigger: GGTGGCCTTCACGTTTGCCAACTCTGCCCTAAACCC...CAACAGCAGGCATCTACGGAGCCAGCAAATTAAGGAATGATCGCTCAGTATAAA 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000067098.8 |
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| CDS-3UTR CAA 90 bp | ATTTTTAAAGCAGGGCGCACTGGTGGGCTTTCCTTGAAGTTAACTCCCTTTACAACTAGAGCACACACGTaGCCCAGCAGTGAGACGACA | + |
|
Preference number: 5 (lower is better) Translates to: IFKAGRTGGLSLKLTPFTTRAHT*PSSETT Trigger: TGTCGTCTCACTGCTGGGCAACGTGTGTGCTCTAGT...TGTAAAGGGAGTTAACTTCAAGGAAAGCCCACCAGTGCGCCCTGCTTTAAAAAT 49% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000067098.8 |
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| CDS-3UTR CAA 90 bp | ATTTTTAAAGCAGGGCGCACTGGTGGGCTTTCCTTGAAGTTAACTCCCTTTACACTGAACAGCGACATGTaGTACAGTATGGGGTTTAGG | + |
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Preference number: 5 (lower is better) Translates to: IFKAGRTGGLSLKLTPFTLNSDM*YSMGFR Trigger: CCTAAACCCCATACTGTACAACATGTCGCTGTTCAG...TGTAAAGGGAGTTAACTTCAAGGAAAGCCCACCAGTGCGCCCTGCTTTAAAAAT 46% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000067098.8 |
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| CDS GCA 72 bp | CGCCGGGAAGGCGCTGCGGGACCACGCGGAACAAGATaGAGAGGGGCAGCGCGGCGAGCGCCGAGTAACCCC | + |
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Preference number: 6 (lower is better) Translates to: RREGAAGPRGTR*RGAARRAPSNP Trigger: GGGGTTACTCGGCGCTCGCCGCGCTGCCCCTCTGCATCTTGTTCCGCGTGGTCCCGCAGCGCCTTCCCGGCG 74% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000067098.8 |
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| CDS CAA 90 bp | ACTAGAGGGATGGCGCTGGTGAAGAGCAAATCCGCGCAGAAGAGGTaGAGCACCAGGCTGGCTGTCGCCCCACGGCGCCGACGGCGCGCC | + |
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Preference number: 6 (lower is better) Translates to: TRGMALVKSKSAQKR*STRLAVAPRRRRRA Trigger: GGCGCGCCGTCGGCGCCGTGGGGCGACAGCCAGCCTGGTGCTCAACCTCTTCTGCGCGGATTTGCTCTTCACCAGCGCCATCCCTCTAGT 68% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000067098.8 |
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| CDS CAA 90 bp | GCCCCACGGCGCCGACGGCGCGCCACCAGCACTAGAGCACACACGTaGCCCAGCAGTGAGACGACAAAGATGAGCCCCAGAACGGTGGTC | + |
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Preference number: 6 (lower is better) Translates to: APRRRRRATSTRAHT*PSSETTKMSPRTVV Trigger: GACCACCGTTCTGGGGCTCATCTTTGTCGTCTCACTGCTGGGCAACGTGTGTGCTCTAGTGCTGGTGGCGCGCCGTCGGCGCCGTGGGGC 67% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000067098.8 |
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| CDS CCA 72 bp | CGGTTGGGCCAATCCAATGTGCAAATCGGAATTTCCTaGTCCCCGCCGGGAAGGCGCTGCGGGACCACGCGG | + |
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Preference number: 6 (lower is better) Translates to: RLGQSNVQIGIS*SPPGRRCGTTR Trigger: CCGCGTGGTCCCGCAGCGCCTTCCCGGCGGGGACCAGGAAATTCCGATTTGCACATTGGATTGGCCCAACCG 65% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000067098.8 |
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| CDS CAA 72 bp | ATGGCGCTGGTGAAGAGCAAATCCGCGCAGAAGAGGTaGAGCACCAGGCTGGCTGTCGCCCCACGGCGCCGA | + |
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Preference number: 6 (lower is better) Translates to: MALVKSKSAQKR*STRLAVAPRRR Trigger: TCGGCGCCGTGGGGCGACAGCCAGCCTGGTGCTCAACCTCTTCTGCGCGGATTTGCTCTTCACCAGCGCCAT 65% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000067098.8 |
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| CDS CAA 72 bp | CGCCGACGGCGCGCCACCAGCACTAGAGCACACACGTaGCCCAGCAGTGAGACGACAAAGATGAGCCCCAGA | + |
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Preference number: 6 (lower is better) Translates to: RRRRATSTRAHT*PSSETTKMSPR Trigger: TCTGGGGCTCATCTTTGTCGTCTCACTGCTGGGCAACGTGTGTGCTCTAGTGCTGGTGGCGCGCCGTCGGCG 64% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000067098.8 |
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| CDS CAA 90 bp | GTCGCCCTTGACATCCGAGAAGAAAGGGAAGTGGGTGCGATTGACTaGGTCCAGGGTGTGCGAGGGGCCAGGGCCCGTCGTCTGTGCACA | + |
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Preference number: 6 (lower is better) Translates to: VALDIREEREVGAID*VQGVRGARARRLCT Trigger: TGTGCACAGACGACGGGCCCTGGCCCCTCGCACACCCTGGACCAAGTCAATCGCACCCACTTCCCTTTCTTCTCGGATGTCAAGGGCGAC 62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000067098.8 |
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| CDS GCA 72 bp | AAAGGGAAGTGGGTGCGATTGACTTGGTCCAGGGTGTaGGAGGGGCCAGGGCCCGTCGTCTGTGCACACTCA | + |
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Preference number: 6 (lower is better) Translates to: KGKWVRLTWSRV*EGPGPVVCAHS Trigger: TGAGTGTGCACAGACGACGGGCCCTGGCCCCTCGCACACCCTGGACCAAGTCAATCGCACCCACTTCCCTTT 62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000067098.8 |
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| CDS CCA 72 bp | ACATCCGAGAAGAAAGGGAAGTGGGTGCGATTGACTTaGTCCAGGGTGTGCGAGGGGCCAGGGCCCGTCGTC | + |
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Preference number: 6 (lower is better) Translates to: TSEKKGKWVRLT*SRVCEGPGPVV Trigger: GACGACGGGCCCTGGCCCCTCGCACACCCTGGACCAAGTCAATCGCACCCACTTCCCTTTCTTCTCGGATGT 62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000067098.8 |
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| CDS CAA 72 bp | GACATCCGAGAAGAAAGGGAAGTGGGTGCGATTGACTaGGTCCAGGGTGTGCGAGGGGCCAGGGCCCGTCGT | + |
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Preference number: 6 (lower is better) Translates to: DIREEREVGAID*VQGVRGARARR Trigger: ACGACGGGCCCTGGCCCCTCGCACACCCTGGACCAAGTCAATCGCACCCACTTCCCTTTCTTCTCGGATGTC 62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000067098.8 |
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| CDS CCA 72 bp | CGGTGGTCGCCCTTGACATCCGAGAAGAAAGGGAAGTaGGTGCGATTGACTTGGTCCAGGGTGTGCGAGGGG | + |
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Preference number: 6 (lower is better) Translates to: RWSPLTSEKKGK*VRLTWSRVCEG Trigger: CCCCTCGCACACCCTGGACCAAGTCAATCGCACCCACTTCCCTTTCTTCTCGGATGTCAAGGGCGACCACCG 61% GC, longest homopolymer 4 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000067098.8 |
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| CDS CAA 90 bp | AGAACGGTGGTCTCCACGACGCTCAACACCAACCGGTGGTCGCCCTaGACATCCGAGAAGAAAGGGAAGTGGGTGCGATTGACTTGGTCC | + |
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Preference number: 6 (lower is better) Translates to: RTVVSTTLNTNRWSP*TSEKKGKWVRLTWS Trigger: GGACCAAGTCAATCGCACCCACTTCCCTTTCTTCTCGGATGTCAAGGGCGACCACCGGTTGGTGTTGAGCGTCGTGGAGACCACCGTTCT 58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000067098.8 |
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| CDS TCA 72 bp | GAGCACACACGTTGCCCAGCAGTGAGACGACAAAGATaGGCCCCAGAACGGTGGTCTCCACGACGCTCAACA | + |
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Preference number: 6 (lower is better) Translates to: EHTRCPAVRRQR*APERWSPRRST Trigger: TGTTGAGCGTCGTGGAGACCACCGTTCTGGGGCTCATCTTTGTCGTCTCACTGCTGGGCAACGTGTGTGCTC 58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000067098.8 |
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| CDS CCA 72 bp | AGAACGGTGGTCTCCACGACGCTCAACACCAACCGGTaGTCGCCCTTGACATCCGAGAAGAAAGGGAAGTGG | + |
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Preference number: 6 (lower is better) Translates to: RTVVSTTLNTNR*SPLTSEKKGKW Trigger: CCACTTCCCTTTCTTCTCGGATGTCAAGGGCGACCACCGGTTGGTGTTGAGCGTCGTGGAGACCACCGTTCT 58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000067098.8 |
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| CDS CAA 72 bp | GTCTCCACGACGCTCAACACCAACCGGTGGTCGCCCTaGACATCCGAGAAGAAAGGGAAGTGGGTGCGATTG | + |
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Preference number: 6 (lower is better) Translates to: VSTTLNTNRWSP*TSEKKGKWVRL Trigger: CAATCGCACCCACTTCCCTTTCTTCTCGGATGTCAAGGGCGACCACCGGTTGGTGTTGAGCGTCGTGGAGAC 58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000067098.8 |
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| CDS CAA 72 bp | GAGCAGGAAGAGCGTGCGGAAGAGTCGGTAGTCTTGTaGGGACACTCGGATCTGGTGGCTCTCAGAGTATGC | + |
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Preference number: 6 (lower is better) Translates to: EQEERAEESVVL*GHSDLVALRVC Trigger: GCATACTCTGAGAGCCACCAGATCCGAGTGTCCCAACAAGACTACCGACTCTTCCGCACGCTCTTCCTGCTC 57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000067098.8 |
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| CDS CAA 90 bp | GGAAACCATGAGCAGGAAGAGCGTGCGGAAGAGTCGGTAGTCTTGTaGGGACACTCGGATCTGGTGGCTCTCAGAGTATGCCAAGCTCAG | + |
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Preference number: 6 (lower is better) Translates to: GNHEQEERAEESVVL*GHSDLVALRVCQAQ Trigger: CTGAGCTTGGCATACTCTGAGAGCCACCAGATCCGAGTGTCCCAACAAGACTACCGACTCTTCCGCACGCTCTTCCTGCTCATGGTTTCC 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000067098.8 |
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| CDS CCA 72 bp | GGCAAACGTGAAGGCCACCACCCAGAAGAAAAGGGATaGCCAGATGACCAGGTCCTGCCGGAAGTTTTGGAT | + |
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Preference number: 6 (lower is better) Translates to: GKREGHHPEEKG*PDDQVLPEVLD Trigger: ATCCAAAACTTCCGGCAGGACCTGGTCATCTGGCCATCCCTTTTCTTCTGGGTGGTGGCCTTCACGTTTGCC 56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000067098.8 |
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| CDS CAA 72 bp | CATGAGCAGGAAGAGCGTGCGGAAGAGTCGGTAGTCTaGTTGGGACACTCGGATCTGGTGGCTCTCAGAGTA | + |
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Preference number: 6 (lower is better) Translates to: HEQEERAEESVV*LGHSDLVALRV Trigger: TACTCTGAGAGCCACCAGATCCGAGTGTCCCAACAAGACTACCGACTCTTCCGCACGCTCTTCCTGCTCATG 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000067098.8 |
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| CDS CAA 90 bp | GAAGGAAACCATGAGCAGGAAGAGCGTGCGGAAGAGTCGGTAGTCTaGTTGGGACACTCGGATCTGGTGGCTCTCAGAGTATGCCAAGCT | + |
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Preference number: 6 (lower is better) Translates to: EGNHEQEERAEESVV*LGHSDLVALRVCQA Trigger: AGCTTGGCATACTCTGAGAGCCACCAGATCCGAGTGTCCCAACAAGACTACCGACTCTTCCGCACGCTCTTCCTGCTCATGGTTTCCTTC 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000067098.8 |
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| CDS GCA 72 bp | TTGTTGGGACACTCGGATCTGGTGGCTCTCAGAGTATaGCAAGCTCAGCGTAAGCCTCTTCCGCGATGCTTT | + |
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Preference number: 6 (lower is better) Translates to: LLGHSDLVALRV*QAQRKPLPRCF Trigger: AAAGCATCGCGGAAGAGGCTTACGCTGAGCTTGGCATACTCTGAGAGCCACCAGATCCGAGTGTCCCAACAA 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000067098.8 |
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| CDS TCA 72 bp | TGTACAGTATGGGGTTTAGGGCAGAGTTGGCAAACGTaGAGGCCACCACCCAGAAGAAAAGGGATGGCCAGA | + |
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Preference number: 6 (lower is better) Translates to: CTVWGLGQSWQT*RPPPRRKGMAR Trigger: TCTGGCCATCCCTTTTCTTCTGGGTGGTGGCCTTCACGTTTGCCAACTCTGCCCTAAACCCCATACTGTACA 53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000067098.8 |
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| CDS GCA 72 bp | ACCCAGAAGAAAAGGGATGGCCAGATGACCAGGTCCTaGCGGAAGTTTTGGATCAAGATGAGGAGGATGGTG | + |
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Preference number: 6 (lower is better) Translates to: TQKKRDGQMTRS*RKFWIKMRRMV Trigger: CACCATCCTCCTCATCTTGATCCAAAACTTCCGGCAGGACCTGGTCATCTGGCCATCCCTTTTCTTCTGGGT 53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000067098.8 |
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| CDS CAA 90 bp | TTCCTGAACAGCGACATGTTGTACAGTATGGGGTTTAGGGCAGAGTaGGCAAACGTGAAGGCCACCACCCAGAAGAAAAGGGATGGCCAG | + |
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Preference number: 6 (lower is better) Translates to: FLNSDMLYSMGFRAE*ANVKATTQKKRDGQ Trigger: CTGGCCATCCCTTTTCTTCTGGGTGGTGGCCTTCACGTTTGCCAACTCTGCCCTAAACCCCATACTGTACAACATGTCGCTGTTCAGGAA 52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000067098.8 |
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| CDS CAA 72 bp | AAAATCTTCCTCCATTCGTTCCTGAACAGCGACATGTaGTACAGTATGGGGTTTAGGGCAGAGTTGGCAAAC | + |
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Preference number: 6 (lower is better) Translates to: KIFLHSFLNSDM*YSMGFRAELAN Trigger: GTTTGCCAACTCTGCCCTAAACCCCATACTGTACAACATGTCGCTGTTCAGGAACGAATGGAGGAAGATTTT 46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000067098.8 |
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