RADAR | Search for sensor designs | Human genes | Mouse genes | Code

Pregenerated sensors for FFAR3 (Mus musculus)

Ensembl gene IDs: ENSMUSG00000019429

Ensembl transcript IDs: ENSMUST00000094583.2, ENSMUST00000185748.2

Found 33 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).

Type Sensor Details
3UTR CCA 90 bp GTGCACTCTAGTCCGTCTGAGCTAGGGAATGACCTGCAGACACGCTaGAGCCTACTCCTGCCTGCCCCTGGAGAGCTCTCCGCCAGCCAT +
Preference number: 1 (lower is better)
Translates to: VHSSPSELGNDLQTR*SLLLPAPGELSASH
Trigger: ATGGCTGGCGGAGAGCTCTCCAGGGGCAGGCAGGAGTAGGCTCCAGCGTGTCTGCAGGTCATTCCCTAGCTCAGACGGACTAGAGTGCAC
62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000094583.2
3UTR GCA 90 bp GAGCTAGGAGGAGTCAGCGGCTTGCACACACACACACACACACCCTaGACCCCTACACACCCACACCCCAAGTTCCCAGCTCAGTTCCAG +
Preference number: 1 (lower is better)
Translates to: ELGGVSGLHTHTHTP*TPTHPHPKFPAQFQ
Trigger: CTGGAACTGAGCTGGGAACTTGGGGTGTGGGTGTGTAGGGGTGCAGGGTGTGTGTGTGTGTGTGTGCAAGCCGCTGACTCCTCCTAGCTC
60% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000094583.2
3UTR CCA 90 bp ACCCCTACACACCCACACCCCAAGTTCCCAGCTCAGTTCCAGCCCTaGGTAATCCCTTCCTCTTCCACCCAGGGAGGCCTTGAAGCTGGA +
Preference number: 1 (lower is better)
Translates to: TPTHPHPKFPAQFQP*VIPSSSTQGGLEAG
Trigger: TCCAGCTTCAAGGCCTCCCTGGGTGGAAGAGGAAGGGATTACCCAGGGCTGGAACTGAGCTGGGAACTTGGGGTGTGGGTGTGTAGGGGT
60% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000094583.2
3UTR TCA 90 bp GTTCCAGCCCTGGGTAATCCCTTCCTCTTCCACCCAGGGAGGCCTTaGAGCTGGATGGCCAAGGCAGAGGCTTGGCTCTTTCTTCTAGAG +
Preference number: 1 (lower is better)
Translates to: VPALGNPFLFHPGRP*SWMAKAEAWLFLLE
Trigger: CTCTAGAAGAAAGAGCCAAGCCTCTGCCTTGGCCATCCAGCTTCAAGGCCTCCCTGGGTGGAAGAGGAAGGGATTACCCAGGGCTGGAAC
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000094583.2
3UTR-3UTR GCA 90 bp AACTGTCTGGAAAACGCTCACAAGGGCAGGCTGTTCCCCAATCCCTGGAATCCCGAGCCTACTCCTGCCTaGCCCTGGAGAGCTCTCCGC +
Preference number: 2 (lower is better)
Translates to: NCLENAHKGRLFPNPWNPEPTPA*PWRALR
Trigger: GCGGAGAGCTCTCCAGGGGCAGGCAGGAGTAGGCTC...GGGATTCCAGGGATTGGGGAACAGCCTGCCCTTGTGAGCGTTTTCCAGACAGTT
60% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000094583.2
3UTR-3UTR TCA 90 bp CAGGCTGTTCCCCAATCCCTGGAATCCCACCTCCCCCATTCTGAGGAGCTAGGACAAGGAGAGTCCTTGTaGGTGCACTCAGGGCAATCT +
Preference number: 2 (lower is better)
Translates to: QAVPQSLESHLPHSEELGQGESL*VHSGQS
Trigger: AGATTGCCCTGAGTGCACTCACAAGGACTCTCCTTG...TCCTAGCTCCTCAGAATGGGGGAGGTGGGATTCCAGGGATTGGGGAACAGCCTG
57% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000094583.2
3UTR-3UTR CCA 90 bp CAGGCTGTTCCCCAATCCCTGGAATCCCACCTCCCCCATTCTGAGGAGCTAGGAGCCAAGGCAGAGGCTTaGCTCTTTCTTCTAGAGAAG +
Preference number: 2 (lower is better)
Translates to: QAVPQSLESHLPHSEELGAKAEA*LFLLEK
Trigger: CTTCTCTAGAAGAAAGAGCCAAGCCTCTGCCTTGGC...TCCTAGCTCCTCAGAATGGGGGAGGTGGGATTCCAGGGATTGGGGAACAGCCTG
56% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000094583.2
3UTR CAA 90 bp CTTCCACCCAGGGAGGCCTTGAAGCTGGATGGCCAAGGCAGAGGCTaGGCTCTTTCTTCTAGAGAAGTCTCTAATCCCCACAACTTTTCA +
Preference number: 2 (lower is better)
Translates to: LPPREALKLDGQGRG*ALSSREVSNPHNFS
Trigger: TGAAAAGTTGTGGGGATTAGAGACTTCTCTAGAAGAAAGAGCCAAGCCTCTGCCTTGGCCATCCAGCTTCAAGGCCTCCCTGGGTGGAAG
52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000094583.2
3UTR-3UTR GCA 90 bp GAGGCTTGGCTCTTTCTTCTAGAGAAGTCTCTAATCCCCACAACTTTTCAGAGTGCTGGAGCCTACTCCTaGCTGCCCCTGGAGAGCTCT +
Preference number: 2 (lower is better)
Translates to: EAWLFLLEKSLIPTTFQSAGAYS*LPLESS
Trigger: AGAGCTCTCCAGGGGCAGGCAGGAGTAGGCTCCAGC...ACTCTGAAAAGTTGTGGGGATTAGAGACTTCTCTAGAAGAAAGAGCCAAGCCTC
52% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 1 transcripts:
ENSMUST00000094583.2
3UTR-3UTR TCA 90 bp CCAGAAGATGTGAATTTACAGAAGAGTGAGAACTGTCTGGAAAACGCTCACAAGTCAGGGCAATCTGAGTaGCAGCAATGTCTGCAGCCT +
Preference number: 2 (lower is better)
Translates to: PEDVNLQKSENCLENAHKSGQSE*QQCLQP
Trigger: AGGCTGCAGACATTGCTGTCACTCAGATTGCCCTGA...CTTGTGAGCGTTTTCCAGACAGTTCTCACTCTTCTGTAAATTCACATCTTCTGG
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000094583.2
3UTR CCA 72 bp AGTCCGTCTGAGCTAGGGAATGACCTGCAGACACGCTaGAGCCTACTCCTGCCTGCCCCTGGAGAGCTCTCC +
Preference number: 3 (lower is better)
Translates to: SPSELGNDLQTR*SLLLPAPGELS
Trigger: GGAGAGCTCTCCAGGGGCAGGCAGGAGTAGGCTCCAGCGTGTCTGCAGGTCATTCCCTAGCTCAGACGGACT
62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000094583.2
3UTR TCA 72 bp TGTTCCCCAATCCCTGGAATCCCACCTCCCCCATTCTaGGGAGCTAGGAGGAGTCAGCGGCTTGCACACACA +
Preference number: 3 (lower is better)
Translates to: CSPIPGIPPPPF*GARRSQRLAHT
Trigger: TGTGTGTGCAAGCCGCTGACTCCTCCTAGCTCCTCAGAATGGGGGAGGTGGGATTCCAGGGATTGGGGAACA
58% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000094583.2
3UTR GCA 72 bp GAGTGCACTCAGGGCAATCTGAGTGACAGCAATGTCTaGAGCCTGTCACAGTGCACTCTAGTCCGTCTGAGC +
Preference number: 3 (lower is better)
Translates to: ECTQGNLSDSNV*SLSQCTLVRLS
Trigger: GCTCAGACGGACTAGAGTGCACTGTGACAGGCTGCAGACATTGCTGTCACTCAGATTGCCCTGAGTGCACTC
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000094583.2
3UTR GCA 72 bp GATAGGAAGGAGGGCGGCAAGGAGAGTCCTTGTGAGTaGACTCAGGGCAATCTGAGTGACAGCAATGTCTGC +
Preference number: 3 (lower is better)
Translates to: DRKEGGKESPCE*TQGNLSDSNVC
Trigger: GCAGACATTGCTGTCACTCAGATTGCCCTGAGTGCACTCACAAGGACTCTCCTTGCCGCCCTCCTTCCTATC
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000094583.2
3UTR TCA 72 bp CATACGCATCCCAGAAGATGTGAATTTACAGAAGAGTaGGAACTGTCTGGAAAACGCTCACAAGGGCAGGCT +
Preference number: 3 (lower is better)
Translates to: HTHPRRCEFTEE*ELSGKRSQGQA
Trigger: AGCCTGCCCTTGTGAGCGTTTTCCAGACAGTTCTCACTCTTCTGTAAATTCACATCTTCTGGGATGCGTATG
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000094583.2
CDS-3UTR CCA 90 bp GGAATGACCTGCAGACACGCTGGAGCCTACTCCTGCCTGCCCCTGGAGAGCTCTCTGACCAGACCAGCCTaGGCCAGCCGGGGCCGGGTT +
Preference number: 4 (lower is better)
Translates to: GMTCRHAGAYSCLPLESSLTRPA*ASRGRV
Trigger: AACCCGGCCCCGGCTGGCCCAGGCTGGTCTGGTCAG...AGAGCTCTCCAGGGGCAGGCAGGAGTAGGCTCCAGCGTGTCTGCAGGTCATTCC
67% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000094583.2
CDS-3UTR TCA 90 bp ACCTGCAGACACGCTGGAGCCTACTCCTGCCTGCCCCTGGAGAGCTCTCCGCCAAAGGCACACAAGTTCTaGGCAGCCTCCCCAGGAGTT +
Preference number: 4 (lower is better)
Translates to: TCRHAGAYSCLPLESSPPKAHKF*AASPGV
Trigger: AACTCCTGGGGAGGCTGCTCAGAACTTGTGTGCCTT...TGGCGGAGAGCTCTCCAGGGGCAGGCAGGAGTAGGCTCCAGCGTGTCTGCAGGT
62% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000094583.2
CDS-3UTR GCA 90 bp CCGTCTGAGCTAGGGAATGACCTGCAGACACGCTGGAGCCTACTCCTGCCTGCCCCATCTCATGCCACATaGTGCCTCCACCATGCGAAA +
Preference number: 4 (lower is better)
Translates to: PSELGNDLQTRWSLLLPAPSHAT*CLHHAK
Trigger: TTTCGCATGGTGGAGGCAGCATGTGGCATGAGATGG...GGCAGGCAGGAGTAGGCTCCAGCGTGTCTGCAGGTCATTCCCTAGCTCAGACGG
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000094583.2
CDS-3UTR CCA 90 bp GCCTACTCCTGCCTGCCCCTGGAGAGCTCTCCGCCAGCCATAGCACTGAGCCAAAGCTCGGACACTCCTTaGATGGCTCTTCTCCATTCT +
Preference number: 4 (lower is better)
Translates to: AYSCLPLESSPPAIALSQSSDTP*MALLHS
Trigger: AGAATGGAGAAGAGCCATCCAAGGAGTGTCCGAGCT...TTGGCTCAGTGCTATGGCTGGCGGAGAGCTCTCCAGGGGCAGGCAGGAGTAGGC
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000094583.2
CDS-3UTR CCA 90 bp GCTGGAGCCTACTCCTGCCTGCCCCTGGAGAGCTCTCCGCCAGCCATAGCACTGGGAGCAGGTCCGAAATaGTCAGGTTTAGCAAAAGTA +
Preference number: 4 (lower is better)
Translates to: AGAYSCLPLESSPPAIALGAGPK*SGLAKV
Trigger: TACTTTTGCTAAACCTGACCATTTCGGACCTGCTCC...CAGTGCTATGGCTGGCGGAGAGCTCTCCAGGGGCAGGCAGGAGTAGGCTCCAGC
58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000094583.2
CDS-3UTR GCA 90 bp CTGTCTGGAAAACGCTCACAAGGGCAGGCTGTTCCCCAATCCCTGGAATCCCACGCAGAAGCCATCTCATaGCACATGCTGCCTCCACCA +
Preference number: 4 (lower is better)
Translates to: LSGKRSQGQAVPQSLESHAEAIS*HMLPPP
Trigger: TGGTGGAGGCAGCATGTGGCATGAGATGGCTTCTGC...GTGGGATTCCAGGGATTGGGGAACAGCCTGCCCTTGTGAGCGTTTTCCAGACAG
57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000094583.2
CDS-3UTR GCA 90 bp CCAGCTCAGTTCCAGCCCTGGGTAATCCCTTCCTCTTCCACCCAGGGAGGCCTTACTACAGTGAGCCGATaGCAGGAACCAACAGACTAC +
Preference number: 4 (lower is better)
Translates to: PAQFQPWVIPSSSTQGGLTTVSR*QEPTDY
Trigger: GTAGTCTGTTGGTTCCTGGCATCGGCTCACTGTAGT...AAGGCCTCCCTGGGTGGAAGAGGAAGGGATTACCCAGGGCTGGAACTGAGCTGG
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000094583.2
CDS-3UTR GCA 90 bp GCCTACTCCTGCCTGCCCCTGGAGAGCTCTCCGCCAGCCATAGCACTGAGCCAAAGAAAAGCCAGTAATTaGCAAGAAAGAAGCTTGTCC +
Preference number: 4 (lower is better)
Translates to: AYSCLPLESSPPAIALSQRKASN*QERSLS
Trigger: GGACAAGCTTCTTTCTTGGCAATTACTGGCTTTTCT...TTGGCTCAGTGCTATGGCTGGCGGAGAGCTCTCCAGGGGCAGGCAGGAGTAGGC
54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000094583.2
CDS-3UTR GCA 90 bp GATAGGAAGGAGGGCGGCAAGGAGAGTCCTTGTGAGTGCACTCAGGGCAATCTGGATGAGCAGTGTGGCTaGAAGAAGCCCCATTATCCT +
Preference number: 4 (lower is better)
Translates to: DRKEGGKESPCECTQGNLDEQCG*KKPHYP
Trigger: AGGATAATGGGGCTTCTTGCAGCCACACTGCTCATC...CAGATTGCCCTGAGTGCACTCACAAGGACTCTCCTTGCCGCCCTCCTTCCTATC
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000094583.2
CDS-3UTR TCA 90 bp GAGGCTTGGCTCTTTCTTCTAGAGAAGTCTCTAATCCCCACAACTTTTCAGAGTAAAGGGGGCAGAAGATaGAGGGCAGAAGCCATCTCA +
Preference number: 4 (lower is better)
Translates to: EAWLFLLEKSLIPTTFQSKGGRR*RAEAIS
Trigger: TGAGATGGCTTCTGCCCTTCATCTTCTGCCCCCTTT...ACTCTGAAAAGTTGTGGGGATTAGAGACTTCTCTAGAAGAAAGAGCCAAGCCTC
48% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 1 transcripts:
ENSMUST00000094583.2
CDS-3UTR CAA 90 bp CTAGGGAATGACCTGCAGACACGCTGGAGCCTACTCCTGCCTGCCCCTGGAGAGTCCCCTGGCTGTAGGTaGCATTTCCCCAGTATTCAG +
Preference number: 5 (lower is better)
Translates to: LGNDLQTRWSLLLPAPGESPGCR*HFPSIQ
Trigger: CTGAATACTGGGGAAATGCAACCTACAGCCAGGGGA...CTCTCCAGGGGCAGGCAGGAGTAGGCTCCAGCGTGTCTGCAGGTCATTCCCTAG
59% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 1 transcripts:
ENSMUST00000094583.2
CDS TCA 90 bp CCACCACATGGGACATATTATAGGGGCCGAAGCAGACGAAGAAGATaGGCAGTGTGGCTGCAAGAAGCCCCATTATCCTCTTGCGCCGGC +
Preference number: 5 (lower is better)
Translates to: PPHGTYYRGRSRRRR*AVWLQEAPLSSCAG
Trigger: GCCGGCGCAAGAGGATAATGGGGCTTCTTGCAGCCACACTGCTCATCTTCTTCGTCTGCTTCGGCCCCTATAATATGTCCCATGTGGTGG
56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000094583.2
ENSMUST00000185748.2
CDS GCA 72 bp GGGGCCGAAGCAGACGAAGAAGATGAGCAGTGTGGCTaGAAGAAGCCCCATTATCCTCTTGCGCCGGCGCCG +
Preference number: 6 (lower is better)
Translates to: GAEADEEDEQCG*KKPHYPLAPAP
Trigger: CGGCGCCGGCGCAAGAGGATAATGGGGCTTCTTGCAGCCACACTGCTCATCTTCTTCGTCTGCTTCGGCCCC
62% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000094583.2
ENSMUST00000185748.2
CDS TCA 72 bp GGAGCACGTAGCTCCGCCAGGACGGACTCTCACGGCTaGCATAGCCCACCACATGGGACATATTATAGGGGC +
Preference number: 6 (lower is better)
Translates to: GARSSARTDSHG*HSPPHGTYYRG
Trigger: GCCCCTATAATATGTCCCATGTGGTGGGCTATGTCAGCCGTGAGAGTCCGTCCTGGCGGAGCTACGTGCTCC
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000094583.2
ENSMUST00000185748.2
CDS CAA 90 bp CTTGGATGGCTCTTCTCCATTCTTTACCTTCAGTTCCAGGCTGACTaGCTGAGTCCAAGGCACACAAGTTCTGAGCAGCCTCCCCAGGAG +
Preference number: 6 (lower is better)
Translates to: LGWLFSILYLQFQAD*LSPRHTSSEQPPQE
Trigger: CTCCTGGGGAGGCTGCTCAGAACTTGTGTGCCTTGGACTCAGCAAGTCAGCCTGGAACTGAAGGTAAAGAATGGAGAAGAGCCATCCAAG
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000094583.2
ENSMUST00000185748.2
CDS TCA 72 bp TCTCCATTCTTTACCTTCAGTTCCAGGCTGACTTGCTaGGTCCAAGGCACACAAGTTCTGAGCAGCCTCCCC +
Preference number: 6 (lower is better)
Translates to: SPFFTFSSRLTC*VQGTQVLSSLP
Trigger: GGGGAGGCTGCTCAGAACTTGTGTGCCTTGGACTCAGCAAGTCAGCCTGGAACTGAAGGTAAAGAATGGAGA
53% GC, longest homopolymer 4 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000094583.2
ENSMUST00000185748.2
CDS TCA 72 bp TCCCCTGGCTGTAGGTTGCATTTCCCCAGTATTCAGTaGTGTAAACCACACTACAGTGAGCCGATGCCAGGA +
Preference number: 6 (lower is better)
Translates to: SPGCRLHFPSIQ*CKPHYSEPMPG
Trigger: TCCTGGCATCGGCTCACTGTAGTGTGGTTTACATCACTGAATACTGGGGAAATGCAACCTACAGCCAGGGGA
51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000094583.2
ENSMUST00000185748.2
CDS CAA 72 bp CTCTTCTCCATTCTTTACCTTCAGTTCCAGGCTGACTaGCTGAGTCCAAGGCACACAAGTTCTGAGCAGCCT +
Preference number: 6 (lower is better)
Translates to: LFSILYLQFQAD*LSPRHTSSEQP
Trigger: AGGCTGCTCAGAACTTGTGTGCCTTGGACTCAGCAAGTCAGCCTGGAACTGAAGGTAAAGAATGGAGAAGAG
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000094583.2
ENSMUST00000185748.2