RADAR | Search for sensor designs | Human genes | Mouse genes | Code

Pregenerated sensors for FEZF2 (Mus musculus)

Ensembl gene IDs: ENSMUSG00000021743

Ensembl transcript IDs: ENSMUST00000022262.6, ENSMUST00000224023.2, ENSMUST00000224714.2

Found 204 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).

Type Sensor Details
3UTR GCA 90 bp CCCTATTCCAAAGAATTGCTGCGCCCTAGCCTGCGGCTTTTGTGCTaGCTCTACCACACTCACCTCATTCTCAGCACACTCCCCCTCCCC +
Preference number: 1 (lower is better)
Translates to: PYSKELLRPSLRLLC*LYHTHLILSTLPLP
Trigger: GGGGAGGGGGAGTGTGCTGAGAATGAGGTGAGTGTGGTAGAGGCAGCACAAAAGCCGCAGGCTAGGGCGCAGCAATTCTTTGGAATAGGG
58% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000224023.2
3UTR GCA 90 bp GCTCTTCTGGGCGCTCACGGTGACAGGCTGGGATTAAAAGCCGGCTaGCTGAGGAGAAGCGGAGGCCTGGAATTAAATATGTTTCAGCGC +
Preference number: 1 (lower is better)
Translates to: ALLGAHGDRLGLKAG*LRRSGGLELNMFQR
Trigger: GCGCTGAAACATATTTAATTCCAGGCCTCCGCTTCTCCTCAGGCAGCCGGCTTTTAATCCCAGCCTGTCACCGTGAGCGCCCAGAAGAGC
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000022262.6
ENSMUST00000224714.2
3UTR GCA 90 bp CAACCCTATTCCAAAGAATTGCTGCGCCCTAGCCTGCGGCTTTTGTaGTGCCTCTACCACACTCACCTCATTCTCAGCACACTCCCCCTC +
Preference number: 1 (lower is better)
Translates to: QPYSKELLRPSLRLL*CLYHTHLILSTLPL
Trigger: GAGGGGGAGTGTGCTGAGAATGAGGTGAGTGTGGTAGAGGCAGCACAAAAGCCGCAGGCTAGGGCGCAGCAATTCTTTGGAATAGGGTTG
56% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000224023.2
3UTR GCA 90 bp CTCTGTCTGCACAACCCTATTCCAAAGAATTGCTGCGCCCTAGCCTaGGGCTTTTGTGCTGCCTCTACCACACTCACCTCATTCTCAGCA +
Preference number: 1 (lower is better)
Translates to: LCLHNPIPKNCCALA*GFCAASTTLTSFSA
Trigger: TGCTGAGAATGAGGTGAGTGTGGTAGAGGCAGCACAAAAGCCGCAGGCTAGGGCGCAGCAATTCTTTGGAATAGGGTTGTGCAGACAGAG
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000224023.2
3UTR TCA 90 bp ATATGTAATATTCCGTGTTCGCTTGTACAGGAGAGATTACAAGGTTaGGTGAAGATGGCAGGGGCATCACGCTCTTCTGGGCGCTCACGG +
Preference number: 1 (lower is better)
Translates to: ICNIPCSLVQERLQG*VKMAGASRSSGRSR
Trigger: CCGTGAGCGCCCAGAAGAGCGTGATGCCCCTGCCATCTTCACTCAACCTTGTAATCTCTCCTGTACAAGCGAACACGGAATATTACATAT
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000022262.6
ENSMUST00000224714.2
3UTR TCA 90 bp CTGGAATTAAATATGTTTCAGCGCACTGGATTTAAATACGTTTCCTaGATGTACAAAGGTGGGAGCCACGCGTTTGTGCCGGTCATCGAG +
Preference number: 1 (lower is better)
Translates to: LELNMFQRTGFKYVS*MYKGGSHAFVPVIE
Trigger: CTCGATGACCGGCACAAACGCGTGGCTCCCACCTTTGTACATTCAGGAAACGTATTTAAATCCAGTGCGCTGAAACATATTTAATTCCAG
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000022262.6
ENSMUST00000224714.2
3UTR GCA 90 bp TTAAATACGTTTCCTGAATGTACAAAGGTGGGAGCCACGCGTTTGTaGCGGTCATCGAGGACACGTTTACATTTCCCCAAAAATATGCTG +
Preference number: 1 (lower is better)
Translates to: LNTFPECTKVGATRL*RSSRTRLHFPKNML
Trigger: CAGCATATTTTTGGGGAAATGTAAACGTGTCCTCGATGACCGGCACAAACGCGTGGCTCCCACCTTTGTACATTCAGGAAACGTATTTAA
46% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000022262.6
ENSMUST00000224714.2
3UTR CAA 90 bp GCACAACCCTATTCCAAAGAATTGCTGCGCCCTAGCCTGCGGCTTTaGTGCTGCCTCTACCACACTCACCTCATTCTCAGCACACTCCCC +
Preference number: 2 (lower is better)
Translates to: AQPYSKELLRPSLRL*CCLYHTHLILSTLP
Trigger: GGGGAGTGTGCTGAGAATGAGGTGAGTGTGGTAGAGGCAGCACAAAAGCCGCAGGCTAGGGCGCAGCAATTCTTTGGAATAGGGTTGTGC
56% GC, longest homopolymer 4 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000224023.2
3UTR-3UTR TCA 90 bp AGATGGCAGGGGCATCACGCTCTTCTGGGCGCTCACGGTGACAGGCTGGGATTATTTAAATACGTTTCCTaGATGTACAAAGGTGGGAGC +
Preference number: 2 (lower is better)
Translates to: RWQGHHALLGAHGDRLGLFKYVS*MYKGGS
Trigger: GCTCCCACCTTTGTACATTCAGGAAACGTATTTAAA...TAATCCCAGCCTGTCACCGTGAGCGCCCAGAAGAGCGTGATGCCCCTGCCATCT
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000022262.6
ENSMUST00000224714.2
3UTR-3UTR TCA 90 bp CGGCTGCCTGAGGAGAAGCGGAGGCCTGGAATTAAATATGTTTCAGCGCACTGGTTTAAATACGTTTCCTaGATGTACAAAGGTGGGAGC +
Preference number: 2 (lower is better)
Translates to: RLPEEKRRPGIKYVSAHWFKYVS*MYKGGS
Trigger: GCTCCCACCTTTGTACATTCAGGAAACGTATTTAAA...CCAGTGCGCTGAAACATATTTAATTCCAGGCCTCCGCTTCTCCTCAGGCAGCCG
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000022262.6
ENSMUST00000224714.2
3UTR CAA 90 bp GATTTAAATACGTTTCCTGAATGTACAAAGGTGGGAGCCACGCGTTaGTGCCGGTCATCGAGGACACGTTTACATTTCCCCAAAAATATG +
Preference number: 2 (lower is better)
Translates to: DLNTFPECTKVGATR*CRSSRTRLHFPKNM
Trigger: CATATTTTTGGGGAAATGTAAACGTGTCCTCGATGACCGGCACAAACGCGTGGCTCCCACCTTTGTACATTCAGGAAACGTATTTAAATC
44% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000022262.6
ENSMUST00000224714.2
3UTR GCA 72 bp GGCGCTCACGGTGACAGGCTGGGATTAAAAGCCGGCTaGCTGAGGAGAAGCGGAGGCCTGGAATTAAATATG +
Preference number: 3 (lower is better)
Translates to: GAHGDRLGLKAG*LRRSGGLELNM
Trigger: CATATTTAATTCCAGGCCTCCGCTTCTCCTCAGGCAGCCGGCTTTTAATCCCAGCCTGTCACCGTGAGCGCC
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000022262.6
ENSMUST00000224714.2
3UTR GCA 72 bp AAAGAATTGCTGCGCCCTAGCCTGCGGCTTTTGTGCTaGCTCTACCACACTCACCTCATTCTCAGCACACTC +
Preference number: 3 (lower is better)
Translates to: KELLRPSLRLLC*LYHTHLILSTL
Trigger: GAGTGTGCTGAGAATGAGGTGAGTGTGGTAGAGGCAGCACAAAAGCCGCAGGCTAGGGCGCAGCAATTCTTT
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000224023.2
3UTR GCA 72 bp TCCAAAGAATTGCTGCGCCCTAGCCTGCGGCTTTTGTaGTGCCTCTACCACACTCACCTCATTCTCAGCACA +
Preference number: 3 (lower is better)
Translates to: SKELLRPSLRLL*CLYHTHLILST
Trigger: TGTGCTGAGAATGAGGTGAGTGTGGTAGAGGCAGCACAAAAGCCGCAGGCTAGGGCGCAGCAATTCTTTGGA
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000224023.2
3UTR GCA 72 bp CACAACCCTATTCCAAAGAATTGCTGCGCCCTAGCCTaGGGCTTTTGTGCTGCCTCTACCACACTCACCTCA +
Preference number: 3 (lower is better)
Translates to: HNPIPKNCCALA*GFCAASTTLTS
Trigger: TGAGGTGAGTGTGGTAGAGGCAGCACAAAAGCCGCAGGCTAGGGCGCAGCAATTCTTTGGAATAGGGTTGTG
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000224023.2
3UTR TCA 72 bp ATTCCGTGTTCGCTTGTACAGGAGAGATTACAAGGTTaGGTGAAGATGGCAGGGGCATCACGCTCTTCTGGG +
Preference number: 3 (lower is better)
Translates to: IPCSLVQERLQG*VKMAGASRSSG
Trigger: CCCAGAAGAGCGTGATGCCCCTGCCATCTTCACTCAACCTTGTAATCTCTCCTGTACAAGCGAACACGGAAT
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000022262.6
ENSMUST00000224714.2
3UTR GCA 72 bp TTTCCTGAATGTACAAAGGTGGGAGCCACGCGTTTGTaGCGGTCATCGAGGACACGTTTACATTTCCCCAAA +
Preference number: 3 (lower is better)
Translates to: FPECTKVGATRL*RSSRTRLHFPK
Trigger: TTTGGGGAAATGTAAACGTGTCCTCGATGACCGGCACAAACGCGTGGCTCCCACCTTTGTACATTCAGGAAA
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000022262.6
ENSMUST00000224714.2
3UTR TCA 72 bp AATATGTTTCAGCGCACTGGATTTAAATACGTTTCCTaGATGTACAAAGGTGGGAGCCACGCGTTTGTGCCG +
Preference number: 3 (lower is better)
Translates to: NMFQRTGFKYVS*MYKGGSHAFVP
Trigger: CGGCACAAACGCGTGGCTCCCACCTTTGTACATTCAGGAAACGTATTTAAATCCAGTGCGCTGAAACATATT
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000022262.6
ENSMUST00000224714.2
3UTR CCA 72 bp TTAATTTTAGAAATAAGTTTATACGTGAGATCTGCTTaGGTTGGTACAGGGCAGGAAGAACGGACAAGGCAG +
Preference number: 3 (lower is better)
Translates to: LILEISLYVRSA*VGTGQEERTRQ
Trigger: CTGCCTTGTCCGTTCTTCCTGCCCTGTACCAACCCAAGCAGATCTCACGTATAAACTTATTTCTAAAATTAA
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000022262.6
ENSMUST00000224714.2
CDS-3UTR GCA 90 bp CAGGGGCATCACGCTCTTCTGGGCGCTCACGGTGACAGGCTGGGATTAAAAGCCCGCCCGCCCGGAGGCTaGTCTTCCAGAACTCCGAGT +
Preference number: 4 (lower is better)
Translates to: QGHHALLGAHGDRLGLKARPPGG*SSRTPS
Trigger: ACTCGGAGTTCTGGAAGAGCAGCCTCCGGGCGGGCG...GGCTTTTAATCCCAGCCTGTCACCGTGAGCGCCCAGAAGAGCGTGATGCCCCTG
63% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000022262.6
ENSMUST00000224714.2
CDS-3UTR GCA 90 bp GAATTGCTGCGCCCTAGCCTGCGGCTTTTGTGCTGCCTCTACCACACTCACCTCCGCCCGCCCGGAGGCTaGTCTTCCAGAACTCCGAGT +
Preference number: 4 (lower is better)
Translates to: ELLRPSLRLLCCLYHTHLRPPGG*SSRTPS
Trigger: ACTCGGAGTTCTGGAAGAGCAGCCTCCGGGCGGGCG...GAGGTGAGTGTGGTAGAGGCAGCACAAAAGCCGCAGGCTAGGGCGCAGCAATTC
62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000224023.2
CDS-3UTR GCA 90 bp CAGGGGCATCACGCTCTTCTGGGCGCTCACGGTGACAGGCTGGGATTAAAAGCCCGCCACAGTTGGTTTTaGACAAGCCGCTGGCGCCGC +
Preference number: 4 (lower is better)
Translates to: QGHHALLGAHGDRLGLKARHSWF*TSRWRR
Trigger: GCGGCGCCAGCGGCTTGTGCAAAACCAACTGTGGCG...GGCTTTTAATCCCAGCCTGTCACCGTGAGCGCCCAGAAGAGCGTGATGCCCCTG
62% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 2 transcripts:
ENSMUST00000022262.6
ENSMUST00000224714.2
CDS-3UTR GCA 90 bp CACACTCACCTCATTCTCAGCACACTCCCCCTCCCCTGCGACCCTCTGAACCCTCGCCACAGTTGGTTTTaGACAAGCCGCTGGCGCCGC +
Preference number: 4 (lower is better)
Translates to: HTHLILSTLPLPCDPLNPRHSWF*TSRWRR
Trigger: GCGGCGCCAGCGGCTTGTGCAAAACCAACTGTGGCG...AGGGTTCAGAGGGTCGCAGGGGAGGGGGAGTGTGCTGAGAATGAGGTGAGTGTG
62% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 1 transcripts:
ENSMUST00000224023.2
CDS-3UTR GCA 90 bp CTGCGCCCTAGCCTGCGGCTTTTGTGCTGCCTCTACCACACTCACCTCATTCTCGGAAGTGGGGGCCTGTaGGTTGAGGAGGCCGGATGG +
Preference number: 4 (lower is better)
Translates to: LRPSLRLLCCLYHTHLILGSGGL*VEEAGW
Trigger: CCATCCGGCCTCCTCAACGCACAGGCCCCCACTTCC...GAGAATGAGGTGAGTGTGGTAGAGGCAGCACAAAAGCCGCAGGCTAGGGCGCAG
62% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000224023.2
CDS-3UTR CCA 90 bp AGCACACTCCCCCTCCCCTGCGACCCTCTGAACCCTAAAGATGAGATGAGGGAGTTTTGCACAAGCCGCTaGCGCCGCACACTGGGGCCC +
Preference number: 4 (lower is better)
Translates to: STLPLPCDPLNPKDEMREFCTSR*RRTLGP
Trigger: GGGCCCCAGTGTGCGGCGCCAGCGGCTTGTGCAAAA...CTCCCTCATCTCATCTTTAGGGTTCAGAGGGTCGCAGGGGAGGGGGAGTGTGCT
62% GC, longest homopolymer 5 nt, total homopolymer stretches 17 nt.
Matches the following 1 transcripts:
ENSMUST00000224023.2
CDS-3UTR CCA 90 bp AGATGGCAGGGGCATCACGCTCTTCTGGGCGCTCACGGTGACAGGCTGGGATTAAGTAGAGAGAGCCGCTaGCAGGCAGCCCCACAGCCT +
Preference number: 4 (lower is better)
Translates to: RWQGHHALLGAHGDRLGLSRESR*QAAPQP
Trigger: AGGCTGTGGGGCTGCCTGCCAGCGGCTCTCTCTACT...TAATCCCAGCCTGTCACCGTGAGCGCCCAGAAGAGCGTGATGCCCCTGCCATCT
62% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000022262.6
ENSMUST00000224714.2
CDS-3UTR CCA 90 bp CACACTCACCTCATTCTCAGCACACTCCCCCTCCCCTGCGACCCTCTGAACCCTGGTCTAGCTCCGGTGTaGACAGGCATGTGGCGGGTG +
Preference number: 4 (lower is better)
Translates to: HTHLILSTLPLPCDPLNPGLAPV*TGMWRV
Trigger: CACCCGCCACATGCCTGTCCACACCGGAGCTAGACC...AGGGTTCAGAGGGTCGCAGGGGAGGGGGAGTGTGCTGAGAATGAGGTGAGTGTG
62% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000224023.2
CDS-3UTR TCA 90 bp GCCCTAGCCTGCGGCTTTTGTGCTGCCTCTACCACACTCACCTCATTCTCAGCATTTAGAAGTGGCCGGTaGCGCTCCAGCGCGCGGGCA +
Preference number: 4 (lower is better)
Translates to: ALACGFCAASTTLTSFSAFRSGR*RSSARA
Trigger: TGCCCGCGCGCTGGAGCGTCACCGGCCACTTCTAAA...TGCTGAGAATGAGGTGAGTGTGGTAGAGGCAGCACAAAAGCCGCAGGCTAGGGC
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000224023.2
CDS-3UTR GCA 90 bp TGCTGCGCCCTAGCCTGCGGCTTTTGTGCTGCCTCTACCACACTCACCTCATTCGGCCCAGTTCGGCCTTaGAGCACACGCCACAGTTGG +
Preference number: 4 (lower is better)
Translates to: CCALACGFCAASTTLTSFGPVRP*STRHSW
Trigger: CCAACTGTGGCGTGTGCTGCAAGGCCGAACTGGGCC...GAATGAGGTGAGTGTGGTAGAGGCAGCACAAAAGCCGCAGGCTAGGGCGCAGCA
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000224023.2
CDS-3UTR GCA 90 bp CCTGAATGTACAAAGGTGGGAGCCACGCGTTTGTGCCGGTCATCGAGGACACGTGGAAGTGGGGGCCTGTaGGTTGAGGAGGCCGGATGG +
Preference number: 4 (lower is better)
Translates to: PECTKVGATRLCRSSRTRGSGGL*VEEAGW
Trigger: CCATCCGGCCTCCTCAACGCACAGGCCCCCACTTCC...ACGTGTCCTCGATGACCGGCACAAACGCGTGGCTCCCACCTTTGTACATTCAGG
61% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000022262.6
ENSMUST00000224714.2
CDS-3UTR CCA 90 bp GCCTGCGGCTTTTGTGCTGCCTCTACCACACTCACCTCATTCTCAGCACACTCCAGGCCGGGGGCACCATaGTCTCCAGGGAAGCTGAGC +
Preference number: 4 (lower is better)
Translates to: ACGFCAASTTLTSFSAHSRPGAP*SPGKLS
Trigger: GCTCAGCTTCCCTGGAGACCATGGTGCCCCCGGCCT...GGAGTGTGCTGAGAATGAGGTGAGTGTGGTAGAGGCAGCACAAAAGCCGCAGGC
61% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000224023.2
CDS-3UTR CCA 90 bp AGATGGCAGGGGCATCACGCTCTTCTGGGCGCTCACGGTGACAGGCTGGGATTACCGGATGGGAAAAGGTaGCCTCCGAGGAGCTCCGAA +
Preference number: 4 (lower is better)
Translates to: RWQGHHALLGAHGDRLGLPDGKR*PPRSSE
Trigger: TTCGGAGCTCCTCGGAGGCCACCTTTTCCCATCCGG...TAATCCCAGCCTGTCACCGTGAGCGCCCAGAAGAGCGTGATGCCCCTGCCATCT
61% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000022262.6
ENSMUST00000224714.2
CDS-3UTR CCA 90 bp CAGGGGCATCACGCTCTTCTGGGCGCTCACGGTGACAGGCTGGGATTAAAAGCCGTTGAGGAGGCCGGATaGGAAAAGGTGGCCTCCGAG +
Preference number: 4 (lower is better)
Translates to: QGHHALLGAHGDRLGLKAVEEAG*EKVASE
Trigger: CTCGGAGGCCACCTTTTCCCATCCGGCCTCCTCAAC...GGCTTTTAATCCCAGCCTGTCACCGTGAGCGCCCAGAAGAGCGTGATGCCCCTG
61% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 2 transcripts:
ENSMUST00000022262.6
ENSMUST00000224714.2
CDS-3UTR CCA 90 bp CAGGGGCATCACGCTCTTCTGGGCGCTCACGGTGACAGGCTGGGATTAAAAGCCCAGAGAGTGCTGGCCTaGCGGAAGCCTTTGCCACAG +
Preference number: 4 (lower is better)
Translates to: QGHHALLGAHGDRLGLKAQRVLA*RKPLPQ
Trigger: CTGTGGCAAAGGCTTCCGCCAGGCCAGCACTCTCTG...GGCTTTTAATCCCAGCCTGTCACCGTGAGCGCCCAGAAGAGCGTGATGCCCCTG
61% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000022262.6
ENSMUST00000224714.2
CDS-3UTR CCA 90 bp CATCACGCTCTTCTGGGCGCTCACGGTGACAGGCTGGGATTAAAAGCCGGCTGCGTCTGCAGAGAGTGCTaGCCTGGCGGAAGCCTTTGC +
Preference number: 4 (lower is better)
Translates to: HHALLGAHGDRLGLKAGCVCREC*PGGSLC
Trigger: GCAAAGGCTTCCGCCAGGCCAGCACTCTCTGCAGAC...GCAGCCGGCTTTTAATCCCAGCCTGTCACCGTGAGCGCCCAGAAGAGCGTGATG
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000022262.6
ENSMUST00000224714.2
CDS-3UTR TCA 90 bp GTGGGAGCCACGCGTTTGTGCCGGTCATCGAGGACACGTTTACATTTCCCCAAATTTAGAAGTGGCCGGTaGCGCTCCAGCGCGCGGGCA +
Preference number: 4 (lower is better)
Translates to: VGATRLCRSSRTRLHFPKFRSGR*RSSARA
Trigger: TGCCCGCGCGCTGGAGCGTCACCGGCCACTTCTAAA...TTTGGGGAAATGTAAACGTGTCCTCGATGACCGGCACAAACGCGTGGCTCCCAC
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000022262.6
ENSMUST00000224714.2
CDS-3UTR TCA 90 bp CTGCGCCCTAGCCTGCGGCTTTTGTGCTGCCTCTACCACACTCACCTCATTCTCGCGGCGAGCAGAGGTTaGGCAGTTTCTTGCTCTGGC +
Preference number: 4 (lower is better)
Translates to: LRPSLRLLCCLYHTHLILAASRG*AVSCSG
Trigger: GCCAGAGCAAGAAACTGCTCAACCTCTGCTCGCCGC...GAGAATGAGGTGAGTGTGGTAGAGGCAGCACAAAAGCCGCAGGCTAGGGCGCAG
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000224023.2
CDS-3UTR TCA 90 bp AGATGGCAGGGGCATCACGCTCTTCTGGGCGCTCACGGTGACAGGCTGGGATTAAGAAAAAGCTTGGGGTaGGCAGCCAGGGAAGTGGGG +
Preference number: 4 (lower is better)
Translates to: RWQGHHALLGAHGDRLGLRKSLG*AAREVG
Trigger: CCCCACTTCCCTGGCTGCTCACCCCAAGCTTTTTCT...TAATCCCAGCCTGTCACCGTGAGCGCCCAGAAGAGCGTGATGCCCCTGCCATCT
60% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 2 transcripts:
ENSMUST00000022262.6
ENSMUST00000224714.2
CDS-3UTR GCA 90 bp CGTGAGATCTGCTTGGGTTGGTACAGGGCAGGAAGAACGGACAAGGCAGTAGCTCGCCCGCCCGGAGGCTaGTCTTCCAGAACTCCGAGT +
Preference number: 4 (lower is better)
Translates to: REICLGWYRAGRTDKAVARPPGG*SSRTPS
Trigger: ACTCGGAGTTCTGGAAGAGCAGCCTCCGGGCGGGCG...AGCTACTGCCTTGTCCGTTCTTCCTGCCCTGTACCAACCCAAGCAGATCTCACG
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000022262.6
ENSMUST00000224714.2
CDS-3UTR CCA 90 bp CGCCCTAGCCTGCGGCTTTTGTGCTGCCTCTACCACACTCACCTCATTCTCAGCCCGGATGGGAAAAGGTaGCCTCCGAGGAGCTCCGAA +
Preference number: 4 (lower is better)
Translates to: RPSLRLLCCLYHTHLILSPDGKR*PPRSSE
Trigger: TTCGGAGCTCCTCGGAGGCCACCTTTTCCCATCCGG...GCTGAGAATGAGGTGAGTGTGGTAGAGGCAGCACAAAAGCCGCAGGCTAGGGCG
60% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000224023.2
CDS-3UTR CCA 90 bp CTGCGCCCTAGCCTGCGGCTTTTGTGCTGCCTCTACCACACTCACCTCATTCTCCAGAGAGTGCTGGCCTaGCGGAAGCCTTTGCCACAG +
Preference number: 4 (lower is better)
Translates to: LRPSLRLLCCLYHTHLILQRVLA*RKPLPQ
Trigger: CTGTGGCAAAGGCTTCCGCCAGGCCAGCACTCTCTG...GAGAATGAGGTGAGTGTGGTAGAGGCAGCACAAAAGCCGCAGGCTAGGGCGCAG
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000224023.2
CDS-3UTR CCA 90 bp AGCACACTCCCCCTCCCCTGCGACCCTCTGAACCCTAAAGATGAGATGAGGGAGGTCTGCAGAGAGTGCTaGCCTGGCGGAAGCCTTTGC +
Preference number: 4 (lower is better)
Translates to: STLPLPCDPLNPKDEMREVCREC*PGGSLC
Trigger: GCAAAGGCTTCCGCCAGGCCAGCACTCTCTGCAGAC...CTCCCTCATCTCATCTTTAGGGTTCAGAGGGTCGCAGGGGAGGGGGAGTGTGCT
60% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000224023.2
CDS-3UTR TCA 90 bp AGATGGCAGGGGCATCACGCTCTTCTGGGCGCTCACGGTGACAGGCTGGGATTAAGAACTCCGAGTAACTaGGCAGCGTCTTGGACGGCA +
Preference number: 4 (lower is better)
Translates to: RWQGHHALLGAHGDRLGLRTPSN*AASWTA
Trigger: TGCCGTCCAAGACGCTGCTCAGTTACTCGGAGTTCT...TAATCCCAGCCTGTCACCGTGAGCGCCCAGAAGAGCGTGATGCCCCTGCCATCT
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000022262.6
ENSMUST00000224714.2
CDS-3UTR TCA 90 bp GAATTGCTGCGCCCTAGCCTGCGGCTTTTGTGCTGCCTCTACCACACTCACCTCGTTTGCTGTGGCTCTTaGCTCCCCCTCGTTCAGCTG +
Preference number: 4 (lower is better)
Translates to: ELLRPSLRLLCCLYHTHLVCCGS*LPLVQL
Trigger: CAGCTGAACGAGGGGGAGTCAAGAGCCACAGCAAAC...GAGGTGAGTGTGGTAGAGGCAGCACAAAAGCCGCAGGCTAGGGCGCAGCAATTC
59% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000224023.2
CDS-3UTR TCA 90 bp TTTGTGCTGCCTCTACCACACTCACCTCATTCTCAGCACACTCCCCCTCCCCTGGCGTGGAGCTGCGATTaGAGGCTTTGCCGCACTGGT +
Preference number: 4 (lower is better)
Translates to: FVLPLPHSPHSQHTPPPLAWSCD*RLCRTG
Trigger: ACCAGTGCGGCAAAGCCTTCAATCGCAGCTCCACGC...CAGGGGAGGGGGAGTGTGCTGAGAATGAGGTGAGTGTGGTAGAGGCAGCACAAA
59% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000224023.2
CDS-3UTR GCA 90 bp GGCTGCCTGAGGAGAAGCGGAGGCCTGGAATTAAATATGTTTCAGCGCACTGGAGGAAGTGGGGGCCTGTaGGTTGAGGAGGCCGGATGG +
Preference number: 4 (lower is better)
Translates to: GCLRRSGGLELNMFQRTGGSGGL*VEEAGW
Trigger: CCATCCGGCCTCCTCAACGCACAGGCCCCCACTTCC...TCCAGTGCGCTGAAACATATTTAATTCCAGGCCTCCGCTTCTCCTCAGGCAGCC
59% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000022262.6
ENSMUST00000224714.2
CDS-3UTR GCA 90 bp AGCACACTCCCCCTCCCCTGCGACCCTCTGAACCCTAAAGATGAGATGAGGGAGTGCTCCAGTGGCGCATaGAAGCGCTCCTTATGGGGA +
Preference number: 4 (lower is better)
Translates to: STLPLPCDPLNPKDEMRECSSGA*KRSLWG
Trigger: TCCCCATAAGGAGCGCTTGCATGCGCCACTGGAGCA...CTCCCTCATCTCATCTTTAGGGTTCAGAGGGTCGCAGGGGAGGGGGAGTGTGCT
59% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 1 transcripts:
ENSMUST00000224023.2
CDS-3UTR GCA 90 bp CACACTCACCTCATTCTCAGCACACTCCCCCTCCCCTGCGACCCTCTGAACCCTTTCTCCTTCAGCACCTaGTCCAGTGGCGCATGCAAG +
Preference number: 4 (lower is better)
Translates to: HTHLILSTLPLPCDPLNPFSFST*SSGACK
Trigger: CTTGCATGCGCCACTGGAGCAGGTGCTGAAGGAGAA...AGGGTTCAGAGGGTCGCAGGGGAGGGGGAGTGTGCTGAGAATGAGGTGAGTGTG
59% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000224023.2
CDS-3UTR GCA 90 bp TGGCAGGGGCATCACGCTCTTCTGGGCGCTCACGGTGACAGGCTGGGATTAAAATGTGTCTGCAGAGAGTaGTGGCCTGGCGGAAGCCTT +
Preference number: 4 (lower is better)
Translates to: WQGHHALLGAHGDRLGLKCVCRE*WPGGSL
Trigger: AAGGCTTCCGCCAGGCCAGCACTCTCTGCAGACACA...TTTTAATCCCAGCCTGTCACCGTGAGCGCCCAGAAGAGCGTGATGCCCCTGCCA
59% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000022262.6
ENSMUST00000224714.2
CDS-3UTR GCA 90 bp GCCCTAGCCTGCGGCTTTTGTGCTGCCTCTACCACACTCACCTCATTCTCAGCAGCGTGGATGCGGATGTaGGTGTTGAGCGTGGAGCTG +
Preference number: 4 (lower is better)
Translates to: ALACGFCAASTTLTSFSAAWMRM*VLSVEL
Trigger: CAGCTCCACGCTCAACACGCACATCCGCATCCACGC...TGCTGAGAATGAGGTGAGTGTGGTAGAGGCAGCACAAAAGCCGCAGGCTAGGGC
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000224023.2
CDS-3UTR CCA 90 bp CATCACGCTCTTCTGGGCGCTCACGGTGACAGGCTGGGATTAAAAGCCGGCTGCAGCACACGCCACAGTTaGTTTTGCACAAGCCGCTGG +
Preference number: 4 (lower is better)
Translates to: HHALLGAHGDRLGLKAGCSTRHS*FCTSRW
Trigger: CCAGCGGCTTGTGCAAAACCAACTGTGGCGTGTGCT...GCAGCCGGCTTTTAATCCCAGCCTGTCACCGTGAGCGCCCAGAAGAGCGTGATG
59% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000022262.6
ENSMUST00000224714.2
CDS-3UTR CCA 90 bp GCGGCTTTTGTGCTGCCTCTACCACACTCACCTCATTCTCAGCACACTCCCCCTGTTGAGGAGGCCGGATaGGAAAAGGTGGCCTCCGAG +
Preference number: 4 (lower is better)
Translates to: AAFVLPLPHSPHSQHTPPVEEAG*EKVASE
Trigger: CTCGGAGGCCACCTTTTCCCATCCGGCCTCCTCAAC...AGGGGGAGTGTGCTGAGAATGAGGTGAGTGTGGTAGAGGCAGCACAAAAGCCGC
59% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 1 transcripts:
ENSMUST00000224023.2
CDS-3UTR CCA 90 bp CCTGAATGTACAAAGGTGGGAGCCACGCGTTTGTGCCGGTCATCGAGGACACGTCAGCACCTGCTCCAGTaGCGCATGCAAGCGCTCCTT +
Preference number: 4 (lower is better)
Translates to: PECTKVGATRLCRSSRTRQHLLQ*RMQALL
Trigger: AAGGAGCGCTTGCATGCGCCACTGGAGCAGGTGCTG...ACGTGTCCTCGATGACCGGCACAAACGCGTGGCTCCCACCTTTGTACATTCAGG
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000022262.6
ENSMUST00000224714.2
CDS-3UTR CCA 90 bp TGGCAGGGGCATCACGCTCTTCTGGGCGCTCACGGTGACAGGCTGGGATTAAAACCCGGTAGTTTGCTGTaGCTCTTGACTCCCCCTCGT +
Preference number: 4 (lower is better)
Translates to: WQGHHALLGAHGDRLGLKPGSLL*LLTPPR
Trigger: ACGAGGGGGAGTCAAGAGCCACAGCAAACTACCGGG...TTTTAATCCCAGCCTGTCACCGTGAGCGCCCAGAAGAGCGTGATGCCCCTGCCA
59% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 2 transcripts:
ENSMUST00000022262.6
ENSMUST00000224714.2
CDS-3UTR TCA 90 bp GCTTGTACAGGAGAGATTACAAGGTTGAGTGAAGATGGCAGGGGCATCACGCTCTTTAGAAGTGGCCGGTaGCGCTCCAGCGCGCGGGCA +
Preference number: 4 (lower is better)
Translates to: ACTGEITRLSEDGRGITLFRSGR*RSSARA
Trigger: TGCCCGCGCGCTGGAGCGTCACCGGCCACTTCTAAA...GAGCGTGATGCCCCTGCCATCTTCACTCAACCTTGTAATCTCTCCTGTACAAGC
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000022262.6
ENSMUST00000224714.2
CDS-3UTR TCA 90 bp AGATGGCAGGGGCATCACGCTCTTCTGGGCGCTCACGGTGACAGGCTGGGATTATGGAGTCCAGGTAGTTaGAGTAGTAGAGAGAGCCGC +
Preference number: 4 (lower is better)
Translates to: RWQGHHALLGAHGDRLGLWSPGS*SSRESR
Trigger: GCGGCTCTCTCTACTACTTCAACTACCTGGACTCCA...TAATCCCAGCCTGTCACCGTGAGCGCCCAGAAGAGCGTGATGCCCCTGCCATCT
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000022262.6
ENSMUST00000224714.2
CDS-3UTR TCA 90 bp CACACTCACCTCATTCTCAGCACACTCCCCCTCCCCTGCGACCCTCTGAACCCTTGGAGTCCAGGTAGTTaGAGTAGTAGAGAGAGCCGC +
Preference number: 4 (lower is better)
Translates to: HTHLILSTLPLPCDPLNPWSPGS*SSRESR
Trigger: GCGGCTCTCTCTACTACTTCAACTACCTGGACTCCA...AGGGTTCAGAGGGTCGCAGGGGAGGGGGAGTGTGCTGAGAATGAGGTGAGTGTG
58% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000224023.2
CDS-3UTR TCA 90 bp CCTGAATGTACAAAGGTGGGAGCCACGCGTTTGTGCCGGTCATCGAGGACACGTAGAAAAAGCTTGGGGTaGGCAGCCAGGGAAGTGGGG +
Preference number: 4 (lower is better)
Translates to: PECTKVGATRLCRSSRTRRKSLG*AAREVG
Trigger: CCCCACTTCCCTGGCTGCTCACCCCAAGCTTTTTCT...ACGTGTCCTCGATGACCGGCACAAACGCGTGGCTCCCACCTTTGTACATTCAGG
58% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000022262.6
ENSMUST00000224714.2
CDS-3UTR TCA 90 bp TTTGTGCTGCCTCTACCACACTCACCTCATTCTCAGCACACTCCCCCTCCCCTGAGAAAAAGCTTGGGGTaGGCAGCCAGGGAAGTGGGG +
Preference number: 4 (lower is better)
Translates to: FVLPLPHSPHSQHTPPPLRKSLG*AAREVG
Trigger: CCCCACTTCCCTGGCTGCTCACCCCAAGCTTTTTCT...CAGGGGAGGGGGAGTGTGCTGAGAATGAGGTGAGTGTGGTAGAGGCAGCACAAA
58% GC, longest homopolymer 5 nt, total homopolymer stretches 18 nt.
Matches the following 1 transcripts:
ENSMUST00000224023.2
CDS-3UTR TCA 90 bp CGGCTGCCTGAGGAGAAGCGGAGGCCTGGAATTAAATATGTTTCAGCGCACTGGGCGTGGAGCTGCGATTaGAGGCTTTGCCGCACTGGT +
Preference number: 4 (lower is better)
Translates to: RLPEEKRRPGIKYVSAHWAWSCD*RLCRTG
Trigger: ACCAGTGCGGCAAAGCCTTCAATCGCAGCTCCACGC...CCAGTGCGCTGAAACATATTTAATTCCAGGCCTCCGCTTCTCCTCAGGCAGCCG
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000022262.6
ENSMUST00000224714.2
CDS-3UTR GCA 90 bp TTTGTGCTGCCTCTACCACACTCACCTCATTCTCAGCACACTCCCCCTCCCCTGGCCTGGTTGATGACCTaGGGTTTGATGACCCTGCCG +
Preference number: 4 (lower is better)
Translates to: FVLPLPHSPHSQHTPPPLAWLMT*GLMTLP
Trigger: CGGCAGGGTCATCAAACCGCAGGTCATCAACCAGGC...CAGGGGAGGGGGAGTGTGCTGAGAATGAGGTGAGTGTGGTAGAGGCAGCACAAA
58% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000224023.2
CDS-3UTR GCA 90 bp GCCCTAGCCTGCGGCTTTTGTGCTGCCTCTACCACACTCACCTCATTCTCAGCATGTGTCTGCAGAGAGTaGTGGCCTGGCGGAAGCCTT +
Preference number: 4 (lower is better)
Translates to: ALACGFCAASTTLTSFSACVCRE*WPGGSL
Trigger: AAGGCTTCCGCCAGGCCAGCACTCTCTGCAGACACA...TGCTGAGAATGAGGTGAGTGTGGTAGAGGCAGCACAAAAGCCGCAGGCTAGGGC
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000224023.2
CDS-3UTR GCA 90 bp CAGGCTGGGATTAAAAGCCGGCTGCCTGAGGAGAAGCGGAGGCCTGGAATTAAAGCGTGGATGCGGATGTaGGTGTTGAGCGTGGAGCTG +
Preference number: 4 (lower is better)
Translates to: QAGIKSRLPEEKRRPGIKAWMRM*VLSVEL
Trigger: CAGCTCCACGCTCAACACGCACATCCGCATCCACGC...TTTAATTCCAGGCCTCCGCTTCTCCTCAGGCAGCCGGCTTTTAATCCCAGCCTG
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000022262.6
ENSMUST00000224714.2
CDS-3UTR CCA 90 bp GCTTGTACAGGAGAGATTACAAGGTTGAGTGAAGATGGCAGGGGCATCACGCTCAGGCCGGGGGCACCATaGTCTCCAGGGAAGCTGAGC +
Preference number: 4 (lower is better)
Translates to: ACTGEITRLSEDGRGITLRPGAP*SPGKLS
Trigger: GCTCAGCTTCCCTGGAGACCATGGTGCCCCCGGCCT...GAGCGTGATGCCCCTGCCATCTTCACTCAACCTTGTAATCTCTCCTGTACAAGC
58% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000022262.6
ENSMUST00000224714.2
CDS-3UTR CCA 90 bp GAATTGCTGCGCCCTAGCCTGCGGCTTTTGTGCTGCCTCTACCACACTCACCTCCCAGCAGAAAAAGCTTaGGGTGAGCAGCCAGGGAAG +
Preference number: 4 (lower is better)
Translates to: ELLRPSLRLLCCLYHTHLPAEKA*GEQPGK
Trigger: CTTCCCTGGCTGCTCACCCCAAGCTTTTTCTGCTGG...GAGGTGAGTGTGGTAGAGGCAGCACAAAAGCCGCAGGCTAGGGCGCAGCAATTC
58% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000224023.2
CDS-3UTR CCA 90 bp TGGCAGGGGCATCACGCTCTTCTGGGCGCTCACGGTGACAGGCTGGGATTAAAACCAGCAGAAAAAGCTTaGGGTGAGCAGCCAGGGAAG +
Preference number: 4 (lower is better)
Translates to: WQGHHALLGAHGDRLGLKPAEKA*GEQPGK
Trigger: CTTCCCTGGCTGCTCACCCCAAGCTTTTTCTGCTGG...TTTTAATCCCAGCCTGTCACCGTGAGCGCCCAGAAGAGCGTGATGCCCCTGCCA
58% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 2 transcripts:
ENSMUST00000022262.6
ENSMUST00000224714.2
CDS-3UTR CCA 90 bp TTCCTGAATGTACAAAGGTGGGAGCCACGCGTTTGTGCCGGTCATCGAGGACACTGTCCGCAGCCAGGCTaGCCAGTTTGGCGTTCTCCA +
Preference number: 4 (lower is better)
Translates to: FLNVQRWEPRVCAGHRGHCPQPG*PVWRSP
Trigger: TGGAGAACGCCAAACTGGCCAGCCTGGCTGCGGACA...GTGTCCTCGATGACCGGCACAAACGCGTGGCTCCCACCTTTGTACATTCAGGAA
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000022262.6
ENSMUST00000224714.2
CDS-3UTR CCA 90 bp AGCCTGCGGCTTTTGTGCTGCCTCTACCACACTCACCTCATTCTCAGCACACTCTGTCCGCAGCCAGGCTaGCCAGTTTGGCGTTCTCCA +
Preference number: 4 (lower is better)
Translates to: SLRLLCCLYHTHLILSTLCPQPG*PVWRSP
Trigger: TGGAGAACGCCAAACTGGCCAGCCTGGCTGCGGACA...GAGTGTGCTGAGAATGAGGTGAGTGTGGTAGAGGCAGCACAAAAGCCGCAGGCT
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000224023.2
CDS-3UTR CCA 90 bp TTTGTGCTGCCTCTACCACACTCACCTCATTCTCAGCACACTCCCCCTCCCCTGCCCGGTAGTTTGCTGTaGCTCTTGACTCCCCCTCGT +
Preference number: 4 (lower is better)
Translates to: FVLPLPHSPHSQHTPPPLPGSLL*LLTPPR
Trigger: ACGAGGGGGAGTCAAGAGCCACAGCAAACTACCGGG...CAGGGGAGGGGGAGTGTGCTGAGAATGAGGTGAGTGTGGTAGAGGCAGCACAAA
58% GC, longest homopolymer 5 nt, total homopolymer stretches 14 nt.
Matches the following 1 transcripts:
ENSMUST00000224023.2
CDS-3UTR CCA 90 bp ATTACAAGGTTGAGTGAAGATGGCAGGGGCATCACGCTCTTCTGGGCGCTCACGCAGAGAGTGCTGGCCTaGCGGAAGCCTTTGCCACAG +
Preference number: 4 (lower is better)
Translates to: ITRLSEDGRGITLFWALTQRVLA*RKPLPQ
Trigger: CTGTGGCAAAGGCTTCCGCCAGGCCAGCACTCTCTG...CGTGAGCGCCCAGAAGAGCGTGATGCCCCTGCCATCTTCACTCAACCTTGTAAT
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000022262.6
ENSMUST00000224714.2
CDS-3UTR TCA 90 bp GCGGCTTTTGTGCTGCCTCTACCACACTCACCTCATTCTCAGCACACTCCCCCTAGAACTCCGAGTAACTaGGCAGCGTCTTGGACGGCA +
Preference number: 4 (lower is better)
Translates to: AAFVLPLPHSPHSQHTPPRTPSN*AASWTA
Trigger: TGCCGTCCAAGACGCTGCTCAGTTACTCGGAGTTCT...AGGGGGAGTGTGCTGAGAATGAGGTGAGTGTGGTAGAGGCAGCACAAAAGCCGC
57% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000224023.2
CDS-3UTR TCA 90 bp CGGCTGCCTGAGGAGAAGCGGAGGCCTGGAATTAAATATGTTTCAGCGCACTGGGTTTGCTGTGGCTCTTaGCTCCCCCTCGTTCAGCTG +
Preference number: 4 (lower is better)
Translates to: RLPEEKRRPGIKYVSAHWVCCGS*LPLVQL
Trigger: CAGCTGAACGAGGGGGAGTCAAGAGCCACAGCAAAC...CCAGTGCGCTGAAACATATTTAATTCCAGGCCTCCGCTTCTCCTCAGGCAGCCG
57% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000022262.6
ENSMUST00000224714.2
CDS-3UTR GCA 90 bp GTGGGAGCCACGCGTTTGTGCCGGTCATCGAGGACACGTTTACATTTCCCCAAATGCTCCAGTGGCGCATaGAAGCGCTCCTTATGGGGA +
Preference number: 4 (lower is better)
Translates to: VGATRLCRSSRTRLHFPKCSSGA*KRSLWG
Trigger: TCCCCATAAGGAGCGCTTGCATGCGCCACTGGAGCA...TTTGGGGAAATGTAAACGTGTCCTCGATGACCGGCACAAACGCGTGGCTCCCAC
57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000022262.6
ENSMUST00000224714.2
CDS-3UTR GCA 90 bp ATTACAAGGTTGAGTGAAGATGGCAGGGGCATCACGCTCTTCTGGGCGCTCACGTGCTCCAGTGGCGCATaGAAGCGCTCCTTATGGGGA +
Preference number: 4 (lower is better)
Translates to: ITRLSEDGRGITLFWALTCSSGA*KRSLWG
Trigger: TCCCCATAAGGAGCGCTTGCATGCGCCACTGGAGCA...CGTGAGCGCCCAGAAGAGCGTGATGCCCCTGCCATCTTCACTCAACCTTGTAAT
57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000022262.6
ENSMUST00000224714.2
CDS-3UTR CCA 90 bp GGCTGCCTGAGGAGAAGCGGAGGCCTGGAATTAAATATGTTTCAGCGCACTGGACCGGATGGGAAAAGGTaGCCTCCGAGGAGCTCCGAA +
Preference number: 4 (lower is better)
Translates to: GCLRRSGGLELNMFQRTGPDGKR*PPRSSE
Trigger: TTCGGAGCTCCTCGGAGGCCACCTTTTCCCATCCGG...TCCAGTGCGCTGAAACATATTTAATTCCAGGCCTCCGCTTCTCCTCAGGCAGCC
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000022262.6
ENSMUST00000224714.2
CDS-3UTR CCA 90 bp CCTGAATGTACAAAGGTGGGAGCCACGCGTTTGTGCCGGTCATCGAGGACACGTCCAGCAGAAAAAGCTTaGGGTGAGCAGCCAGGGAAG +
Preference number: 4 (lower is better)
Translates to: PECTKVGATRLCRSSRTRPAEKA*GEQPGK
Trigger: CTTCCCTGGCTGCTCACCCCAAGCTTTTTCTGCTGG...ACGTGTCCTCGATGACCGGCACAAACGCGTGGCTCCCACCTTTGTACATTCAGG
57% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000022262.6
ENSMUST00000224714.2
CDS-3UTR CCA 90 bp TGGCAGGGGCATCACGCTCTTCTGGGCGCTCACGGTGACAGGCTGGGATTAAAACCAGGCTGGCCAGTTTaGCGTTCTCCAGCAGAAAAA +
Preference number: 4 (lower is better)
Translates to: WQGHHALLGAHGDRLGLKPGWPV*RSPAEK
Trigger: TTTTTCTGCTGGAGAACGCCAAACTGGCCAGCCTGG...TTTTAATCCCAGCCTGTCACCGTGAGCGCCCAGAAGAGCGTGATGCCCCTGCCA
57% GC, longest homopolymer 5 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000022262.6
ENSMUST00000224714.2
CDS-3UTR CCA 90 bp TGCTGCGCCCTAGCCTGCGGCTTTTGTGCTGCCTCTACCACACTCACCTCATTCCCAGGCTGGCCAGTTTaGCGTTCTCCAGCAGAAAAA +
Preference number: 4 (lower is better)
Translates to: CCALACGFCAASTTLTSFPGWPV*RSPAEK
Trigger: TTTTTCTGCTGGAGAACGCCAAACTGGCCAGCCTGG...GAATGAGGTGAGTGTGGTAGAGGCAGCACAAAAGCCGCAGGCTAGGGCGCAGCA
57% GC, longest homopolymer 5 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000224023.2
CDS-3UTR CCA 90 bp GCTTGTACAGGAGAGATTACAAGGTTGAGTGAAGATGGCAGGGGCATCACGCTCGGTCTAGCTCCGGTGTaGACAGGCATGTGGCGGGTG +
Preference number: 4 (lower is better)
Translates to: ACTGEITRLSEDGRGITLGLAPV*TGMWRV
Trigger: CACCCGCCACATGCCTGTCCACACCGGAGCTAGACC...GAGCGTGATGCCCCTGCCATCTTCACTCAACCTTGTAATCTCTCCTGTACAAGC
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000022262.6
ENSMUST00000224714.2
CDS-3UTR GCA 90 bp CTGCCTGAGGAGAAGCGGAGGCCTGGAATTAAATATGTTTCAGCGCACTGGATTGGCCCAGTTCGGCCTTaGAGCACACGCCACAGTTGG +
Preference number: 4 (lower is better)
Translates to: LPEEKRRPGIKYVSAHWIGPVRP*STRHSW
Trigger: CCAACTGTGGCGTGTGCTGCAAGGCCGAACTGGGCC...AATCCAGTGCGCTGAAACATATTTAATTCCAGGCCTCCGCTTCTCCTCAGGCAG
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000022262.6
ENSMUST00000224714.2
CDS-3UTR GCA 90 bp GTGGGAGCCACGCGTTTGTGCCGGTCATCGAGGACACGTTTACATTTCCCCAAATTCTCCTTCAGCACCTaGTCCAGTGGCGCATGCAAG +
Preference number: 4 (lower is better)
Translates to: VGATRLCRSSRTRLHFPKFSFST*SSGACK
Trigger: CTTGCATGCGCCACTGGAGCAGGTGCTGAAGGAGAA...TTTGGGGAAATGTAAACGTGTCCTCGATGACCGGCACAAACGCGTGGCTCCCAC
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000022262.6
ENSMUST00000224714.2
CDS-3UTR CCA 90 bp CTGCGCCCTAGCCTGCGGCTTTTGTGCTGCCTCTACCACACTCACCTCATTCTCAGCAGTTTCTTGCTCTaGCTGCTGTCTGCCTCTAAC +
Preference number: 4 (lower is better)
Translates to: LRPSLRLLCCLYHTHLILSSFLL*LLSASN
Trigger: GTTAGAGGCAGACAGCAGCCAGAGCAAGAAACTGCT...GAGAATGAGGTGAGTGTGGTAGAGGCAGCACAAAAGCCGCAGGCTAGGGCGCAG
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000224023.2
CDS-3UTR CCA 90 bp AGCCTGCGGCTTTTGTGCTGCCTCTACCACACTCACCTCATTCTCAGCACACTCAGCACACGCCACAGTTaGTTTTGCACAAGCCGCTGG +
Preference number: 4 (lower is better)
Translates to: SLRLLCCLYHTHLILSTLSTRHS*FCTSRW
Trigger: CCAGCGGCTTGTGCAAAACCAACTGTGGCGTGTGCT...GAGTGTGCTGAGAATGAGGTGAGTGTGGTAGAGGCAGCACAAAAGCCGCAGGCT
56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000224023.2
CDS-3UTR CCA 90 bp GCTTGTACAGGAGAGATTACAAGGTTGAGTGAAGATGGCAGGGGCATCACGCTCGTTGAGGAGGCCGGATaGGAAAAGGTGGCCTCCGAG +
Preference number: 4 (lower is better)
Translates to: ACTGEITRLSEDGRGITLVEEAG*EKVASE
Trigger: CTCGGAGGCCACCTTTTCCCATCCGGCCTCCTCAAC...GAGCGTGATGCCCCTGCCATCTTCACTCAACCTTGTAATCTCTCCTGTACAAGC
56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000022262.6
ENSMUST00000224714.2
CDS-3UTR CCA 90 bp GCTTGTACAGGAGAGATTACAAGGTTGAGTGAAGATGGCAGGGGCATCACGCTCGTCTGCAGAGAGTGCTaGCCTGGCGGAAGCCTTTGC +
Preference number: 4 (lower is better)
Translates to: ACTGEITRLSEDGRGITLVCREC*PGGSLC
Trigger: GCAAAGGCTTCCGCCAGGCCAGCACTCTCTGCAGAC...GAGCGTGATGCCCCTGCCATCTTCACTCAACCTTGTAATCTCTCCTGTACAAGC
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000022262.6
ENSMUST00000224714.2
CDS-3UTR TCA 90 bp CGGCTGCCTGAGGAGAAGCGGAGGCCTGGAATTAAATATGTTTCAGCGCACTGGGGACCCACGCTGTCATaGAGTTTGCGCACATGTTTC +
Preference number: 4 (lower is better)
Translates to: RLPEEKRRPGIKYVSAHWGPTLS*SLRTCF
Trigger: GAAACATGTGCGCAAACTTCATGACAGCGTGGGTCC...CCAGTGCGCTGAAACATATTTAATTCCAGGCCTCCGCTTCTCCTCAGGCAGCCG
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000022262.6
ENSMUST00000224714.2
CDS-3UTR GCA 90 bp ATTACAAGGTTGAGTGAAGATGGCAGGGGCATCACGCTCTTCTGGGCGCTCACGCCTGGCGGAAGCCTTTaGCACAGACTTTGCACACAA +
Preference number: 4 (lower is better)
Translates to: ITRLSEDGRGITLFWALTPGGSL*HRLCTQ
Trigger: TTGTGTGCAAAGTCTGTGGCAAAGGCTTCCGCCAGG...CGTGAGCGCCCAGAAGAGCGTGATGCCCCTGCCATCTTCACTCAACCTTGTAAT
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000022262.6
ENSMUST00000224714.2
CDS-3UTR GCA 90 bp CTAGCCTGCGGCTTTTGTGCTGCCTCTACCACACTCACCTCATTCTCAGCACACCCTGGCGGAAGCCTTTaGCACAGACTTTGCACACAA +
Preference number: 4 (lower is better)
Translates to: LACGFCAASTTLTSFSAHPGGSL*HRLCTQ
Trigger: TTGTGTGCAAAGTCTGTGGCAAAGGCTTCCGCCAGG...GTGTGCTGAGAATGAGGTGAGTGTGGTAGAGGCAGCACAAAAGCCGCAGGCTAG
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000224023.2
CDS-3UTR CCA 90 bp TTAAATACGTTTCCTGAATGTACAAAGGTGGGAGCCACGCGTTTGTGCCGGTCAGGTCTAGCTCCGGTGTaGACAGGCATGTGGCGGGTG +
Preference number: 4 (lower is better)
Translates to: LNTFPECTKVGATRLCRSGLAPV*TGMWRV
Trigger: CACCCGCCACATGCCTGTCCACACCGGAGCTAGACC...TGACCGGCACAAACGCGTGGCTCCCACCTTTGTACATTCAGGAAACGTATTTAA
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000022262.6
ENSMUST00000224714.2
CDS-3UTR GCA 90 bp CTGCCTGAGGAGAAGCGGAGGCCTGGAATTAAATATGTTTCAGCGCACTGGATTGCCTGGTTGATGACCTaGGGTTTGATGACCCTGCCG +
Preference number: 4 (lower is better)
Translates to: LPEEKRRPGIKYVSAHWIAWLMT*GLMTLP
Trigger: CGGCAGGGTCATCAAACCGCAGGTCATCAACCAGGC...AATCCAGTGCGCTGAAACATATTTAATTCCAGGCCTCCGCTTCTCCTCAGGCAG
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000022262.6
ENSMUST00000224714.2
CDS-3UTR CCA 90 bp TTCCTGAATGTACAAAGGTGGGAGCCACGCGTTTGTGCCGGTCATCGAGGACACAGCAGTTTCTTGCTCTaGCTGCTGTCTGCCTCTAAC +
Preference number: 4 (lower is better)
Translates to: FLNVQRWEPRVCAGHRGHSSFLL*LLSASN
Trigger: GTTAGAGGCAGACAGCAGCCAGAGCAAGAAACTGCT...GTGTCCTCGATGACCGGCACAAACGCGTGGCTCCCACCTTTGTACATTCAGGAA
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000022262.6
ENSMUST00000224714.2
CDS-3UTR CCA 90 bp GCTTGTACAGGAGAGATTACAAGGTTGAGTGAAGATGGCAGGGGCATCACGCTCAGCACACGCCACAGTTaGTTTTGCACAAGCCGCTGG +
Preference number: 4 (lower is better)
Translates to: ACTGEITRLSEDGRGITLSTRHS*FCTSRW
Trigger: CCAGCGGCTTGTGCAAAACCAACTGTGGCGTGTGCT...GAGCGTGATGCCCCTGCCATCTTCACTCAACCTTGTAATCTCTCCTGTACAAGC
53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000022262.6
ENSMUST00000224714.2
CDS-3UTR CCA 90 bp AATAAGTTTATACGTGAGATCTGCTTGGGTTGGTACAGGGCAGGAAGAACGGACAGTAGAGAGAGCCGCTaGCAGGCAGCCCCACAGCCT +
Preference number: 4 (lower is better)
Translates to: NKFIREICLGWYRAGRTDSRESR*QAAPQP
Trigger: AGGCTGTGGGGCTGCCTGCCAGCGGCTCTCTCTACT...GTCCGTTCTTCCTGCCCTGTACCAACCCAAGCAGATCTCACGTATAAACTTATT
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000022262.6
ENSMUST00000224714.2
CDS-3UTR CCA 90 bp TTCCTTAATTCTCAGCTCCAAAATTCAGTGCTCCCGAGAGTCAAGCCTGAATCCAGTAGAGAGAGCCGCTaGCAGGCAGCCCCACAGCCT +
Preference number: 4 (lower is better)
Translates to: FLNSQLQNSVLPRVKPESSRESR*QAAPQP
Trigger: AGGCTGTGGGGCTGCCTGCCAGCGGCTCTCTCTACT...GGATTCAGGCTTGACTCTCGGGAGCACTGAATTTTGGAGCTGAGAATTAAGGAA
53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000224023.2
CDS-3UTR CCA 90 bp GAGCCACGCGTTTGTGCCGGTCATCGAGGACACGTTTACATTTCCCCAAAAATACCCGGTAGTTTGCTGTaGCTCTTGACTCCCCCTCGT +
Preference number: 4 (lower is better)
Translates to: EPRVCAGHRGHVYISPKIPGSLL*LLTPPR
Trigger: ACGAGGGGGAGTCAAGAGCCACAGCAAACTACCGGG...TATTTTTGGGGAAATGTAAACGTGTCCTCGATGACCGGCACAAACGCGTGGCTC
53% GC, longest homopolymer 5 nt, total homopolymer stretches 14 nt.
Matches the following 2 transcripts:
ENSMUST00000022262.6
ENSMUST00000224714.2
3UTR CAA 72 bp ACGTTTCCTGAATGTACAAAGGTGGGAGCCACGCGTTaGTGCCGGTCATCGAGGACACGTTTACATTTCCCC +
Preference number: 4 (lower is better)
Translates to: TFPECTKVGATR*CRSSRTRLHFP
Trigger: GGGGAAATGTAAACGTGTCCTCGATGACCGGCACAAACGCGTGGCTCCCACCTTTGTACATTCAGGAAACGT
53% GC, longest homopolymer 4 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000022262.6
ENSMUST00000224714.2
CDS-3UTR TCA 90 bp CTGCCTGAGGAGAAGCGGAGGCCTGGAATTAAATATGTTTCAGCGCACTGGATTAGAACTCCGAGTAACTaGGCAGCGTCTTGGACGGCA +
Preference number: 4 (lower is better)
Translates to: LPEEKRRPGIKYVSAHWIRTPSN*AASWTA
Trigger: TGCCGTCCAAGACGCTGCTCAGTTACTCGGAGTTCT...AATCCAGTGCGCTGAAACATATTTAATTCCAGGCCTCCGCTTCTCCTCAGGCAG
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000022262.6
ENSMUST00000224714.2
CDS-3UTR TCA 90 bp AATAAGTTTATACGTGAGATCTGCTTGGGTTGGTACAGGGCAGGAAGAACGGACGCGTGGAGCTGCGATTaGAGGCTTTGCCGCACTGGT +
Preference number: 4 (lower is better)
Translates to: NKFIREICLGWYRAGRTDAWSCD*RLCRTG
Trigger: ACCAGTGCGGCAAAGCCTTCAATCGCAGCTCCACGC...GTCCGTTCTTCCTGCCCTGTACCAACCCAAGCAGATCTCACGTATAAACTTATT
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000022262.6
ENSMUST00000224714.2
CDS-3UTR GCA 90 bp CTGCCTGAGGAGAAGCGGAGGCCTGGAATTAAATATGTTTCAGCGCACTGGATTTTCTCCTTCAGCACCTaGTCCAGTGGCGCATGCAAG +
Preference number: 4 (lower is better)
Translates to: LPEEKRRPGIKYVSAHWIFSFST*SSGACK
Trigger: CTTGCATGCGCCACTGGAGCAGGTGCTGAAGGAGAA...AATCCAGTGCGCTGAAACATATTTAATTCCAGGCCTCCGCTTCTCCTCAGGCAG
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000022262.6
ENSMUST00000224714.2
CDS-3UTR CCA 90 bp AGCGGAGGCCTGGAATTAAATATGTTTCAGCGCACTGGATTTAAATACGTTTCCAGGCCGGGGGCACCATaGTCTCCAGGGAAGCTGAGC +
Preference number: 4 (lower is better)
Translates to: SGGLELNMFQRTGFKYVSRPGAP*SPGKLS
Trigger: GCTCAGCTTCCCTGGAGACCATGGTGCCCCCGGCCT...GGAAACGTATTTAAATCCAGTGCGCTGAAACATATTTAATTCCAGGCCTCCGCT
52% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000022262.6
ENSMUST00000224714.2
CDS-3UTR CCA 90 bp AGCGGAGGCCTGGAATTAAATATGTTTCAGCGCACTGGATTTAAATACGTTTCCTTTTGCACAAGCCGCTaGCGCCGCACACTGGGGCCC +
Preference number: 4 (lower is better)
Translates to: SGGLELNMFQRTGFKYVSFCTSR*RRTLGP
Trigger: GGGCCCCAGTGTGCGGCGCCAGCGGCTTGTGCAAAA...GGAAACGTATTTAAATCCAGTGCGCTGAAACATATTTAATTCCAGGCCTCCGCT
52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000022262.6
ENSMUST00000224714.2
CDS-3UTR CCA 90 bp GCTTGTACAGGAGAGATTACAAGGTTGAGTGAAGATGGCAGGGGCATCACGCTCCCAGGCTGGCCAGTTTaGCGTTCTCCAGCAGAAAAA +
Preference number: 4 (lower is better)
Translates to: ACTGEITRLSEDGRGITLPGWPV*RSPAEK
Trigger: TTTTTCTGCTGGAGAACGCCAAACTGGCCAGCCTGG...GAGCGTGATGCCCCTGCCATCTTCACTCAACCTTGTAATCTCTCCTGTACAAGC
52% GC, longest homopolymer 5 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000022262.6
ENSMUST00000224714.2
CDS-3UTR CCA 90 bp TTCCTTAATTCTCAGCTCCAAAATTCAGTGCTCCCGAGAGTCAAGCCTGAATCCCAGCACCTGCTCCAGTaGCGCATGCAAGCGCTCCTT +
Preference number: 4 (lower is better)
Translates to: FLNSQLQNSVLPRVKPESQHLLQ*RMQALL
Trigger: AAGGAGCGCTTGCATGCGCCACTGGAGCAGGTGCTG...GGATTCAGGCTTGACTCTCGGGAGCACTGAATTTTGGAGCTGAGAATTAAGGAA
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000224023.2
CDS-3UTR TCA 90 bp GAGCCACGCGTTTGTGCCGGTCATCGAGGACACGTTTACATTTCCCCAAAAATAGGACCCACGCTGTCATaGAGTTTGCGCACATGTTTC +
Preference number: 4 (lower is better)
Translates to: EPRVCAGHRGHVYISPKIGPTLS*SLRTCF
Trigger: GAAACATGTGCGCAAACTTCATGACAGCGTGGGTCC...TATTTTTGGGGAAATGTAAACGTGTCCTCGATGACCGGCACAAACGCGTGGCTC
51% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000022262.6
ENSMUST00000224714.2
CDS-3UTR TCA 90 bp TTTGTGCTGCCTCTACCACACTCACCTCATTCTCAGCACACTCCCCCTCCCCTGACCTTACCTTTTTGGTaGAAGCCTTTGCCACAAAAC +
Preference number: 4 (lower is better)
Translates to: FVLPLPHSPHSQHTPPPLTLPFW*KPLPQN
Trigger: GTTTTGTGGCAAAGGCTTTCACCAAAAAGGTAAGGT...CAGGGGAGGGGGAGTGTGCTGAGAATGAGGTGAGTGTGGTAGAGGCAGCACAAA
51% GC, longest homopolymer 5 nt, total homopolymer stretches 18 nt.
Matches the following 1 transcripts:
ENSMUST00000224023.2
CDS-3UTR GCA 90 bp AGGAGAAGCGGAGGCCTGGAATTAAATATGTTTCAGCGCACTGGATTTAAATACGGCCCAGTTCGGCCTTaGAGCACACGCCACAGTTGG +
Preference number: 4 (lower is better)
Translates to: RRSGGLELNMFQRTGFKYGPVRP*STRHSW
Trigger: CCAACTGTGGCGTGTGCTGCAAGGCCGAACTGGGCC...GTATTTAAATCCAGTGCGCTGAAACATATTTAATTCCAGGCCTCCGCTTCTCCT
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000022262.6
ENSMUST00000224714.2
CDS-3UTR GCA 90 bp AATAAGTTTATACGTGAGATCTGCTTGGGTTGGTACAGGGCAGGAAGAACGGACGCCTGGTTGATGACCTaGGGTTTGATGACCCTGCCG +
Preference number: 4 (lower is better)
Translates to: NKFIREICLGWYRAGRTDAWLMT*GLMTLP
Trigger: CGGCAGGGTCATCAAACCGCAGGTCATCAACCAGGC...GTCCGTTCTTCCTGCCCTGTACCAACCCAAGCAGATCTCACGTATAAACTTATT
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000022262.6
ENSMUST00000224714.2
CDS-3UTR GCA 90 bp AGCCTGCGGCTTTTGTGCTGCCTCTACCACACTCACCTCATTCTCAGCACACTCTTTGGTGAAAGCCTTTaGCACAAAACTCGCAGACGA +
Preference number: 4 (lower is better)
Translates to: SLRLLCCLYHTHLILSTLFGESL*HKTRRR
Trigger: TCGTCTGCGAGTTTTGTGGCAAAGGCTTTCACCAAA...GAGTGTGCTGAGAATGAGGTGAGTGTGGTAGAGGCAGCACAAAAGCCGCAGGCT
51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000224023.2
CDS-3UTR CCA 90 bp TTCCTTAATTCTCAGCTCCAAAATTCAGTGCTCCCGAGAGTCAAGCCTGAATCCATGGGGATAGGAAGCTaGGTGGGGGAACTTGTCCGC +
Preference number: 4 (lower is better)
Translates to: FLNSQLQNSVLPRVKPESMGIGS*VGELVR
Trigger: GCGGACAAGTTCCCCCACCCAGCTTCCTATCCCCAT...GGATTCAGGCTTGACTCTCGGGAGCACTGAATTTTGGAGCTGAGAATTAAGGAA
51% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 1 transcripts:
ENSMUST00000224023.2
CDS-3UTR CCA 90 bp GAGCCACGCGTTTGTGCCGGTCATCGAGGACACGTTTACATTTCCCCAAAAATAAGCTCTGAACTGTCCTaGCTAGGTCCTTTGCTGAGG +
Preference number: 4 (lower is better)
Translates to: EPRVCAGHRGHVYISPKISSELS*LGPLLR
Trigger: CCTCAGCAAAGGACCTAGCCAGGACAGTTCAGAGCT...TATTTTTGGGGAAATGTAAACGTGTCCTCGATGACCGGCACAAACGCGTGGCTC
51% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000022262.6
ENSMUST00000224714.2
CDS-3UTR TCA 90 bp AGGAGAAGCGGAGGCCTGGAATTAAATATGTTTCAGCGCACTGGATTTAAATACGCGGCGAGCAGAGGTTaGGCAGTTTCTTGCTCTGGC +
Preference number: 4 (lower is better)
Translates to: RRSGGLELNMFQRTGFKYAASRG*AVSCSG
Trigger: GCCAGAGCAAGAAACTGCTCAACCTCTGCTCGCCGC...GTATTTAAATCCAGTGCGCTGAAACATATTTAATTCCAGGCCTCCGCTTCTCCT
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000022262.6
ENSMUST00000224714.2
CDS-3UTR GCA 90 bp AGCGGAGGCCTGGAATTAAATATGTTTCAGCGCACTGGATTTAAATACGTTTCCGCGTGGATGCGGATGTaGGTGTTGAGCGTGGAGCTG +
Preference number: 4 (lower is better)
Translates to: SGGLELNMFQRTGFKYVSAWMRM*VLSVEL
Trigger: CAGCTCCACGCTCAACACGCACATCCGCATCCACGC...GGAAACGTATTTAAATCCAGTGCGCTGAAACATATTTAATTCCAGGCCTCCGCT
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000022262.6
ENSMUST00000224714.2
CDS-3UTR GCA 90 bp GGCTGCCTGAGGAGAAGCGGAGGCCTGGAATTAAATATGTTTCAGCGCACTGGATTTGGTGAAAGCCTTTaGCACAAAACTCGCAGACGA +
Preference number: 4 (lower is better)
Translates to: GCLRRSGGLELNMFQRTGFGESL*HKTRRR
Trigger: TCGTCTGCGAGTTTTGTGGCAAAGGCTTTCACCAAA...TCCAGTGCGCTGAAACATATTTAATTCCAGGCCTCCGCTTCTCCTCAGGCAGCC
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000022262.6
ENSMUST00000224714.2
CDS-3UTR GCA 90 bp CCTGAATGTACAAAGGTGGGAGCCACGCGTTTGTGCCGGTCATCGAGGACACGTCGCTGTCATGAAGTTTaGGCACATGTTTCTTTAAGT +
Preference number: 4 (lower is better)
Translates to: PECTKVGATRLCRSSRTRRCHEV*AHVSLS
Trigger: ACTTAAAGAAACATGTGCGCAAACTTCATGACAGCG...ACGTGTCCTCGATGACCGGCACAAACGCGTGGCTCCCACCTTTGTACATTCAGG
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000022262.6
ENSMUST00000224714.2
3UTR CAA 72 bp TATTCCGTGTTCGCTTGTACAGGAGAGATTACAAGGTaGAGTGAAGATGGCAGGGGCATCACGCTCTTCTGG +
Preference number: 4 (lower is better)
Translates to: YSVFACTGEITR*SEDGRGITLFW
Trigger: CCAGAAGAGCGTGATGCCCCTGCCATCTTCACTCAACCTTGTAATCTCTCCTGTACAAGCGAACACGGAATA
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000022262.6
ENSMUST00000224714.2
CDS-3UTR GCA 90 bp CCTGAATGTACAAAGGTGGGAGCCACGCGTTTGTGCCGGTCATCGAGGACACGTTTAAGTCAAAGTTTCTaGAAAAACCTTTGCCGCAAG +
Preference number: 4 (lower is better)
Translates to: PECTKVGATRLCRSSRTRLSQSF*KNLCRK
Trigger: CTTGCGGCAAAGGTTTTTGCAGAAACTTTGACTTAA...ACGTGTCCTCGATGACCGGCACAAACGCGTGGCTCCCACCTTTGTACATTCAGG
49% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000022262.6
ENSMUST00000224714.2
CDS-3UTR CCA 90 bp AGGAGAAGCGGAGGCCTGGAATTAAATATGTTTCAGCGCACTGGATTTAAATACATGGGGATAGGAAGCTaGGTGGGGGAACTTGTCCGC +
Preference number: 4 (lower is better)
Translates to: RRSGGLELNMFQRTGFKYMGIGS*VGELVR
Trigger: GCGGACAAGTTCCCCCACCCAGCTTCCTATCCCCAT...GTATTTAAATCCAGTGCGCTGAAACATATTTAATTCCAGGCCTCCGCTTCTCCT
49% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000022262.6
ENSMUST00000224714.2
CDS-3UTR GCA 90 bp CAGGCTGGGATTAAAAGCCGGCTGCCTGAGGAGAAGCGGAGGCCTGGAATTAAATTAAGTCAAAGTTTCTaGAAAAACCTTTGCCGCAAG +
Preference number: 4 (lower is better)
Translates to: QAGIKSRLPEEKRRPGIKLSQSF*KNLCRK
Trigger: CTTGCGGCAAAGGTTTTTGCAGAAACTTTGACTTAA...TTTAATTCCAGGCCTCCGCTTCTCCTCAGGCAGCCGGCTTTTAATCCCAGCCTG
48% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000022262.6
ENSMUST00000224714.2
CDS-3UTR GCA 90 bp GCTTGTACAGGAGAGATTACAAGGTTGAGTGAAGATGGCAGGGGCATCACGCTCCGCTGTCATGAAGTTTaGGCACATGTTTCTTTAAGT +
Preference number: 4 (lower is better)
Translates to: ACTGEITRLSEDGRGITLRCHEV*AHVSLS
Trigger: ACTTAAAGAAACATGTGCGCAAACTTCATGACAGCG...GAGCGTGATGCCCCTGCCATCTTCACTCAACCTTGTAATCTCTCCTGTACAAGC
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000022262.6
ENSMUST00000224714.2
CDS-3UTR CCA 90 bp TTGAGTCATATATATGTAATATTCCGTGTTCGCTTGTACAGGAGAGATTACAAGTGTCCGCAGCCAGGCTaGCCAGTTTGGCGTTCTCCA +
Preference number: 4 (lower is better)
Translates to: LSHIYVIFRVRLYRRDYKCPQPG*PVWRSP
Trigger: TGGAGAACGCCAAACTGGCCAGCCTGGCTGCGGACA...CTTGTAATCTCTCCTGTACAAGCGAACACGGAATATTACATATATATGACTCAA
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000022262.6
ENSMUST00000224714.2
CDS-3UTR CCA 90 bp TTGAGTCATATATATGTAATATTCCGTGTTCGCTTGTACAGGAGAGATTACAAGCAGCACCTGCTCCAGTaGCGCATGCAAGCGCTCCTT +
Preference number: 4 (lower is better)
Translates to: LSHIYVIFRVRLYRRDYKQHLLQ*RMQALL
Trigger: AAGGAGCGCTTGCATGCGCCACTGGAGCAGGTGCTG...CTTGTAATCTCTCCTGTACAAGCGAACACGGAATATTACATATATATGACTCAA
46% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000022262.6
ENSMUST00000224714.2
CDS-3UTR TCA 90 bp TTGAGTCATATATATGTAATATTCCGTGTTCGCTTGTACAGGAGAGATTACAAGGTTTGCTGTGGCTCTTaGCTCCCCCTCGTTCAGCTG +
Preference number: 4 (lower is better)
Translates to: LSHIYVIFRVRLYRRDYKVCCGS*LPLVQL
Trigger: CAGCTGAACGAGGGGGAGTCAAGAGCCACAGCAAAC...CTTGTAATCTCTCCTGTACAAGCGAACACGGAATATTACATATATATGACTCAA
44% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000022262.6
ENSMUST00000224714.2
CDS-3UTR GCA 90 bp ATTTTAGAAATAAGTTTATACGTGAGATCTGCTTGGGTTGGTACAGGGCAGGAACCTGGCGGAAGCCTTTaGCACAGACTTTGCACACAA +
Preference number: 4 (lower is better)
Translates to: ILEISLYVRSAWVGTGQEPGGSL*HRLCTQ
Trigger: TTGTGTGCAAAGTCTGTGGCAAAGGCTTCCGCCAGG...TTCCTGCCCTGTACCAACCCAAGCAGATCTCACGTATAAACTTATTTCTAAAAT
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000022262.6
ENSMUST00000224714.2
CDS-3UTR GCA 90 bp TTGAGTCATATATATGTAATATTCCGTGTTCGCTTGTACAGGAGAGATTACAAGTGTGTCTGCAGAGAGTaGTGGCCTGGCGGAAGCCTT +
Preference number: 4 (lower is better)
Translates to: LSHIYVIFRVRLYRRDYKCVCRE*WPGGSL
Trigger: AAGGCTTCCGCCAGGCCAGCACTCTCTGCAGACACA...CTTGTAATCTCTCCTGTACAAGCGAACACGGAATATTACATATATATGACTCAA
44% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000022262.6
ENSMUST00000224714.2
CDS-3UTR CCA 90 bp TTGAGTCATATATATGTAATATTCCGTGTTCGCTTGTACAGGAGAGATTACAAGATGGGGATAGGAAGCTaGGTGGGGGAACTTGTCCGC +
Preference number: 4 (lower is better)
Translates to: LSHIYVIFRVRLYRRDYKMGIGS*VGELVR
Trigger: GCGGACAAGTTCCCCCACCCAGCTTCCTATCCCCAT...CTTGTAATCTCTCCTGTACAAGCGAACACGGAATATTACATATATATGACTCAA
44% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000022262.6
ENSMUST00000224714.2
CDS-3UTR GCA 90 bp AGCGGAGGCCTGGAATTAAATATGTTTCAGCGCACTGGATTTAAATACGTTTCCTTTGGTGAAAGCCTTTaGCACAAAACTCGCAGACGA +
Preference number: 4 (lower is better)
Translates to: SGGLELNMFQRTGFKYVSFGESL*HKTRRR
Trigger: TCGTCTGCGAGTTTTGTGGCAAAGGCTTTCACCAAA...GGAAACGTATTTAAATCCAGTGCGCTGAAACATATTTAATTCCAGGCCTCCGCT
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000022262.6
ENSMUST00000224714.2
CDS-3UTR CCA 90 bp GAGTCATATATATGTAATATTCCGTGTTCGCTTGTACAGGAGAGATTACAAGGTAGCTCTGAACTGTCCTaGCTAGGTCCTTTGCTGAGG +
Preference number: 4 (lower is better)
Translates to: ESYICNIPCSLVQERLQGSSELS*LGPLLR
Trigger: CCTCAGCAAAGGACCTAGCCAGGACAGTTCAGAGCT...ACCTTGTAATCTCTCCTGTACAAGCGAACACGGAATATTACATATATATGACTC
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000022262.6
ENSMUST00000224714.2
CDS-3UTR TCA 90 bp TTGAGTCATATATATGTAATATTCCGTGTTCGCTTGTACAGGAGAGATTACAAGTGGAGTCCAGGTAGTTaGAGTAGTAGAGAGAGCCGC +
Preference number: 4 (lower is better)
Translates to: LSHIYVIFRVRLYRRDYKWSPGS*SSRESR
Trigger: GCGGCTCTCTCTACTACTTCAACTACCTGGACTCCA...CTTGTAATCTCTCCTGTACAAGCGAACACGGAATATTACATATATATGACTCAA
42% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000022262.6
ENSMUST00000224714.2
3UTR CAA 72 bp TTTAATTTTAGAAATAAGTTTATACGTGAGATCTGCTaGGGTTGGTACAGGGCAGGAAGAACGGACAAGGCA +
Preference number: 4 (lower is better)
Translates to: FNFRNKFIREIC*GWYRAGRTDKA
Trigger: TGCCTTGTCCGTTCTTCCTGCCCTGTACCAACCCAAGCAGATCTCACGTATAAACTTATTTCTAAAATTAAA
40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000022262.6
ENSMUST00000224714.2
CDS GCA 90 bp CCCTGCCGGCGGGCAGCGCAGAAGGCGCGAGGCCCAGTTCGGCCTTaGAGCACACGCCACAGTTGGTTTTGCACAAGCCGCTGGCGCCGC +
Preference number: 5 (lower is better)
Translates to: PCRRAAQKARGPVRP*STRHSWFCTSRWRR
Trigger: GCGGCGCCAGCGGCTTGTGCAAAACCAACTGTGGCGTGTGCTGCAAGGCCGAACTGGGCCTCGCGCCTTCTGCGCTGCCCGCCGGCAGGG
71% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000022262.6
ENSMUST00000224023.2
ENSMUST00000224714.2
CDS TCA 90 bp CACCGCCGCCCGCCCGGAGGCTGCTCTTCCAGAACTCCGAGTAACTaGGCAGCGTCTTGGACGGCACCTCGTAGCCTAGAGGCTGGAGAG +
Preference number: 5 (lower is better)
Translates to: HRRPPGGCSSRTPSN*AASWTAPRSLEAGE
Trigger: CTCTCCAGCCTCTAGGCTACGAGGTGCCGTCCAAGACGCTGCTCAGTTACTCGGAGTTCTGGAAGAGCAGCCTCCGGGCGGGCGGCGGTG
66% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000022262.6
ENSMUST00000224023.2
ENSMUST00000224714.2
CDS CCA 90 bp GTGAGCAGCCAGGGAAGTGGGGGCCTGTGCGTTGAGGAGGCCGGATaGGAAAAGGTGGCCTCCGAGGAGCTCCGAAGGTGGGTAAGCGGT +
Preference number: 5 (lower is better)
Translates to: VSSQGSGGLCVEEAG*EKVASEELRRWVSG
Trigger: ACCGCTTACCCACCTTCGGAGCTCCTCGGAGGCCACCTTTTCCCATCCGGCCTCCTCAACGCACAGGCCCCCACTTCCCTGGCTGCTCAC
66% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000022262.6
ENSMUST00000224023.2
ENSMUST00000224714.2
CDS CCA 90 bp CTGCTCCAGTGGCGCATGCAAGCGCTCCTTATGGGGATAGGAAGCTaGGTGGGGGAACTTGTCCGCAGCCAGGCTGGCCAGTTTGGCGTT +
Preference number: 5 (lower is better)
Translates to: LLQWRMQALLMGIGS*VGELVRSQAGQFGV
Trigger: AACGCCAAACTGGCCAGCCTGGCTGCGGACAAGTTCCCCCACCCAGCTTCCTATCCCCATAAGGAGCGCTTGCATGCGCCACTGGAGCAG
62% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000022262.6
ENSMUST00000224023.2
ENSMUST00000224714.2
CDS-3UTR CAA 90 bp AGATGGCAGGGGCATCACGCTCTTCTGGGCGCTCACGGTGACAGGCTGGGATTAACGCCACAGTTGGTTTaGCACAAGCCGCTGGCGCCG +
Preference number: 5 (lower is better)
Translates to: RWQGHHALLGAHGDRLGLTPQLV*HKPLAP
Trigger: CGGCGCCAGCGGCTTGTGCAAAACCAACTGTGGCGT...TAATCCCAGCCTGTCACCGTGAGCGCCCAGAAGAGCGTGATGCCCCTGCCATCT
62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000022262.6
ENSMUST00000224714.2
CDS-3UTR CAA 90 bp CAGGGGCATCACGCTCTTCTGGGCGCTCACGGTGACAGGCTGGGATTAAAAGCCAGGCCCAGTTCGGCCTaGCAGCACACGCCACAGTTG +
Preference number: 5 (lower is better)
Translates to: QGHHALLGAHGDRLGLKARPSSA*QHTPQL
Trigger: CAACTGTGGCGTGTGCTGCAAGGCCGAACTGGGCCT...GGCTTTTAATCCCAGCCTGTCACCGTGAGCGCCCAGAAGAGCGTGATGCCCCTG
62% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000022262.6
ENSMUST00000224714.2
CDS-3UTR CAA 90 bp GAATTGCTGCGCCCTAGCCTGCGGCTTTTGTGCTGCCTCTACCACACTCACCTCGTGGGGGCCTGTGCGTaGAGGAGGCCGGATGGGAAA +
Preference number: 5 (lower is better)
Translates to: ELLRPSLRLLCCLYHTHLVGACA*RRPDGK
Trigger: TTTCCCATCCGGCCTCCTCAACGCACAGGCCCCCAC...GAGGTGAGTGTGGTAGAGGCAGCACAAAAGCCGCAGGCTAGGGCGCAGCAATTC
62% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000224023.2
CDS CCA 90 bp ATCATACAGGGCAGCGGCGAGCAGAGGTTGAGCAGTTTCTTGCTCTaGCTGCTGTCTGCCTCTAACGCAGCAGGCCGGGGCTCGAAAGGC +
Preference number: 5 (lower is better)
Translates to: IIQGSGEQRLSSFLL*LLSASNAAGRGSKG
Trigger: GCCTTTCGAGCCCCGGCCTGCTGCGTTAGAGGCAGACAGCAGCCAGAGCAAGAAACTGCTCAACCTCTGCTCGCCGCTGCCCTGTATGAT
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000022262.6
ENSMUST00000224023.2
ENSMUST00000224714.2
CDS-3UTR CAA 90 bp TGGCAGGGGCATCACGCTCTTCTGGGCGCTCACGGTGACAGGCTGGGATTAAAAACGCCACAGTTGGTTTaGCACAAGCCGCTGGCGCCG +
Preference number: 5 (lower is better)
Translates to: WQGHHALLGAHGDRLGLKTPQLV*HKPLAP
Trigger: CGGCGCCAGCGGCTTGTGCAAAACCAACTGTGGCGT...TTTTAATCCCAGCCTGTCACCGTGAGCGCCCAGAAGAGCGTGATGCCCCTGCCA
61% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000022262.6
ENSMUST00000224714.2
CDS-3UTR CAA 90 bp GAATTGCTGCGCCCTAGCCTGCGGCTTTTGTGCTGCCTCTACCACACTCACCTCAGGCCCAGTTCGGCCTaGCAGCACACGCCACAGTTG +
Preference number: 5 (lower is better)
Translates to: ELLRPSLRLLCCLYHTHLRPSSA*QHTPQL
Trigger: CAACTGTGGCGTGTGCTGCAAGGCCGAACTGGGCCT...GAGGTGAGTGTGGTAGAGGCAGCACAAAAGCCGCAGGCTAGGGCGCAGCAATTC
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000224023.2
CDS CCA 90 bp GAGGAGGCCGGATGGGAAAAGGTGGCCTCCGAGGAGCTCCGAAGGTaGGTAAGCGGTGGAGTCCAGGTAGTTGAAGTAGTAGAGAGAGCC +
Preference number: 5 (lower is better)
Translates to: EEAGWEKVASEELRR*VSGGVQVVEVVERA
Trigger: GGCTCTCTCTACTACTTCAACTACCTGGACTCCACCGCTTACCCACCTTCGGAGCTCCTCGGAGGCCACCTTTTCCCATCCGGCCTCCTC
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000022262.6
ENSMUST00000224023.2
ENSMUST00000224714.2
CDS CCA 90 bp TCGTTCAGCTGTCAAGGCCGAGTTCTCCTTCAGCACCTGCTCCAGTaGCGCATGCAAGCGCTCCTTATGGGGATAGGAAGCTGGGTGGGG +
Preference number: 5 (lower is better)
Translates to: SFSCQGRVLLQHLLQ*RMQALLMGIGSWVG
Trigger: CCCCACCCAGCTTCCTATCCCCATAAGGAGCGCTTGCATGCGCCACTGGAGCAGGTGCTGAAGGAGAACTCGGCCTTGACAGCTGAACGA
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000022262.6
ENSMUST00000224023.2
ENSMUST00000224714.2
CDS-3UTR CAA 90 bp CCTGAATGTACAAAGGTGGGAGCCACGCGTTTGTGCCGGTCATCGAGGACACGTCGGGGCTCGGACGTCTaGGCCATGATGCGCTCGATA +
Preference number: 5 (lower is better)
Translates to: PECTKVGATRLCRSSRTRRGSDV*AMMRSI
Trigger: TATCGAGCGCATCATGGCCAAGACGTCCGAGCCCCG...ACGTGTCCTCGATGACCGGCACAAACGCGTGGCTCCCACCTTTGTACATTCAGG
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000022262.6
ENSMUST00000224714.2
CDS-3UTR CAA 90 bp GCGGCTTTTGTGCTGCCTCTACCACACTCACCTCATTCTCAGCACACTCCCCCTACGCCACAGTTGGTTTaGCACAAGCCGCTGGCGCCG +
Preference number: 5 (lower is better)
Translates to: AAFVLPLPHSPHSQHTPPTPQLV*HKPLAP
Trigger: CGGCGCCAGCGGCTTGTGCAAAACCAACTGTGGCGT...AGGGGGAGTGTGCTGAGAATGAGGTGAGTGTGGTAGAGGCAGCACAAAAGCCGC
60% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000224023.2
CDS-3UTR CAA 90 bp GCCTGCGGCTTTTGTGCTGCCTCTACCACACTCACCTCATTCTCAGCACACTCCTTGATGACCTGCGGTTaGATGACCCTGCCGGCGGGC +
Preference number: 5 (lower is better)
Translates to: ACGFCAASTTLTSFSAHSLMTCG*MTLPAG
Trigger: GCCCGCCGGCAGGGTCATCAAACCGCAGGTCATCAA...GGAGTGTGCTGAGAATGAGGTGAGTGTGGTAGAGGCAGCACAAAAGCCGCAGGC
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000224023.2
CDS TCA 90 bp CTAGAGGCTGGAGAGGGATCATACAGGGCAGCGGCGAGCAGAGGTTaGGCAGTTTCTTGCTCTGGCTGCTGTCTGCCTCTAACGCAGCAG +
Preference number: 5 (lower is better)
Translates to: LEAGEGSYRAAASRG*AVSCSGCCLPLTQQ
Trigger: CTGCTGCGTTAGAGGCAGACAGCAGCCAGAGCAAGAAACTGCTCAACCTCTGCTCGCCGCTGCCCTGTATGATCCCTCTCCAGCCTCTAG
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000022262.6
ENSMUST00000224023.2
ENSMUST00000224714.2
CDS-3UTR CAA 90 bp AGCCTGCGGCTTTTGTGCTGCCTCTACCACACTCACCTCATTCTCAGCACACTCCGGGGCTCGGACGTCTaGGCCATGATGCGCTCGATA +
Preference number: 5 (lower is better)
Translates to: SLRLLCCLYHTHLILSTLRGSDV*AMMRSI
Trigger: TATCGAGCGCATCATGGCCAAGACGTCCGAGCCCCG...GAGTGTGCTGAGAATGAGGTGAGTGTGGTAGAGGCAGCACAAAAGCCGCAGGCT
59% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000224023.2
CDS-3UTR CAA 90 bp CGCCCTAGCCTGCGGCTTTTGTGCTGCCTCTACCACACTCACCTCATTCTCAGCAGCGGCGAGCAGAGGTaGAGCAGTTTCTTGCTCTGG +
Preference number: 5 (lower is better)
Translates to: RPSLRLLCCLYHTHLILSSGEQR*SSFLLW
Trigger: CCAGAGCAAGAAACTGCTCAACCTCTGCTCGCCGCT...GCTGAGAATGAGGTGAGTGTGGTAGAGGCAGCACAAAAGCCGCAGGCTAGGGCG
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000224023.2
CDS-3UTR CAA 90 bp CAGGCTGGGATTAAAAGCCGGCTGCCTGAGGAGAAGCGGAGGCCTGGAATTAAAAGGCCCAGTTCGGCCTaGCAGCACACGCCACAGTTG +
Preference number: 5 (lower is better)
Translates to: QAGIKSRLPEEKRRPGIKRPSSA*QHTPQL
Trigger: CAACTGTGGCGTGTGCTGCAAGGCCGAACTGGGCCT...TTTAATTCCAGGCCTCCGCTTCTCCTCAGGCAGCCGGCTTTTAATCCCAGCCTG
59% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000022262.6
ENSMUST00000224714.2
CDS-3UTR CAA 90 bp AGCACACTCCCCCTCCCCTGCGACCCTCTGAACCCTAAAGATGAGATGAGGGAGAGCCCCACAGCCTGGTaGATGACCTGCGGTTTGATG +
Preference number: 5 (lower is better)
Translates to: STLPLPCDPLNPKDEMRESPTAW*MTCGLM
Trigger: CATCAAACCGCAGGTCATCAACCAGGCTGTGGGGCT...CTCCCTCATCTCATCTTTAGGGTTCAGAGGGTCGCAGGGGAGGGGGAGTGTGCT
59% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 1 transcripts:
ENSMUST00000224023.2
CDS-3UTR CAA 90 bp TGCTGCGCCCTAGCCTGCGGCTTTTGTGCTGCCTCTACCACACTCACCTCATTCGCCAGGCTGGCCAGTTaGGCGTTCTCCAGCAGAAAA +
Preference number: 5 (lower is better)
Translates to: CCALACGFCAASTTLTSFARLAS*AFSSRK
Trigger: TTTTCTGCTGGAGAACGCCAAACTGGCCAGCCTGGC...GAATGAGGTGAGTGTGGTAGAGGCAGCACAAAAGCCGCAGGCTAGGGCGCAGCA
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000224023.2
CDS-3UTR CAA 90 bp TGCTGCGCCCTAGCCTGCGGCTTTTGTGCTGCCTCTACCACACTCACCTCATTCGCCTGGCGGAAGCCTTaGCCACAGACTTTGCACACA +
Preference number: 5 (lower is better)
Translates to: CCALACGFCAASTTLTSFAWRKP*PQTLHT
Trigger: TGTGTGCAAAGTCTGTGGCAAAGGCTTCCGCCAGGC...GAATGAGGTGAGTGTGGTAGAGGCAGCACAAAAGCCGCAGGCTAGGGCGCAGCA
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000224023.2
CDS-3UTR CAA 90 bp GCGGCTTTTGTGCTGCCTCTACCACACTCACCTCATTCTCAGCACACTCCCCCTATGCGGATGTGCGTGTaGAGCGTGGAGCTGCGATTG +
Preference number: 5 (lower is better)
Translates to: AAFVLPLPHSPHSQHTPPMRMCV*SVELRL
Trigger: CAATCGCAGCTCCACGCTCAACACGCACATCCGCAT...AGGGGGAGTGTGCTGAGAATGAGGTGAGTGTGGTAGAGGCAGCACAAAAGCCGC
58% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000224023.2
CDS-3UTR CAA 90 bp GCGGCTTTTGTGCTGCCTCTACCACACTCACCTCATTCTCAGCACACTCCCCCTAGGTTGAGCAGTTTCTaGCTCTGGCTGCTGTCTGCC +
Preference number: 5 (lower is better)
Translates to: AAFVLPLPHSPHSQHTPPRLSSF*LWLLSA
Trigger: GGCAGACAGCAGCCAGAGCAAGAAACTGCTCAACCT...AGGGGGAGTGTGCTGAGAATGAGGTGAGTGTGGTAGAGGCAGCACAAAAGCCGC
57% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000224023.2
CDS-3UTR CAA 90 bp AGCCTGCGGCTTTTGTGCTGCCTCTACCACACTCACCTCATTCTCAGCACACTCCAGCACACGCCACAGTaGGTTTTGCACAAGCCGCTG +
Preference number: 5 (lower is better)
Translates to: SLRLLCCLYHTHLILSTLQHTPQ*VLHKPL
Trigger: CAGCGGCTTGTGCAAAACCAACTGTGGCGTGTGCTG...GAGTGTGCTGAGAATGAGGTGAGTGTGGTAGAGGCAGCACAAAAGCCGCAGGCT
57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000224023.2
CDS-3UTR CAA 90 bp CGGCTGCCTGAGGAGAAGCGGAGGCCTGGAATTAAATATGTTTCAGCGCACTGGCAGCACACGCCACAGTaGGTTTTGCACAAGCCGCTG +
Preference number: 5 (lower is better)
Translates to: RLPEEKRRPGIKYVSAHWQHTPQ*VLHKPL
Trigger: CAGCGGCTTGTGCAAAACCAACTGTGGCGTGTGCTG...CCAGTGCGCTGAAACATATTTAATTCCAGGCCTCCGCTTCTCCTCAGGCAGCCG
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000022262.6
ENSMUST00000224714.2
CDS-3UTR CAA 90 bp GTGGGAGCCACGCGTTTGTGCCGGTCATCGAGGACACGTTTACATTTCCCCAAAAGCCCCACAGCCTGGTaGATGACCTGCGGTTTGATG +
Preference number: 5 (lower is better)
Translates to: VGATRLCRSSRTRLHFPKSPTAW*MTCGLM
Trigger: CATCAAACCGCAGGTCATCAACCAGGCTGTGGGGCT...TTTGGGGAAATGTAAACGTGTCCTCGATGACCGGCACAAACGCGTGGCTCCCAC
57% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 2 transcripts:
ENSMUST00000022262.6
ENSMUST00000224714.2
CDS-3UTR CAA 90 bp CATCACGCTCTTCTGGGCGCTCACGGTGACAGGCTGGGATTAAAAGCCGGCTGCCCTTTGCCACAGACTTaGCACACAAACGGTCTAGCT +
Preference number: 5 (lower is better)
Translates to: HHALLGAHGDRLGLKAGCPLPQT*HTNGLA
Trigger: AGCTAGACCGTTTGTGTGCAAAGTCTGTGGCAAAGG...GCAGCCGGCTTTTAATCCCAGCCTGTCACCGTGAGCGCCCAGAAGAGCGTGATG
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000022262.6
ENSMUST00000224714.2
CDS-3UTR CAA 90 bp CAGGCTGGGATTAAAAGCCGGCTGCCTGAGGAGAAGCGGAGGCCTGGAATTAAAATGCGGATGTGCGTGTaGAGCGTGGAGCTGCGATTG +
Preference number: 5 (lower is better)
Translates to: QAGIKSRLPEEKRRPGIKMRMCV*SVELRL
Trigger: CAATCGCAGCTCCACGCTCAACACGCACATCCGCAT...TTTAATTCCAGGCCTCCGCTTCTCCTCAGGCAGCCGGCTTTTAATCCCAGCCTG
57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000022262.6
ENSMUST00000224714.2
CDS-3UTR CAA 90 bp CGTGAGATCTGCTTGGGTTGGTACAGGGCAGGAAGAACGGACAAGGCAGTAGCTAGGTTGAGCAGTTTCTaGCTCTGGCTGCTGTCTGCC +
Preference number: 5 (lower is better)
Translates to: REICLGWYRAGRTDKAVARLSSF*LWLLSA
Trigger: GGCAGACAGCAGCCAGAGCAAGAAACTGCTCAACCT...AGCTACTGCCTTGTCCGTTCTTCCTGCCCTGTACCAACCCAAGCAGATCTCACG
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000022262.6
ENSMUST00000224714.2
CDS-3UTR CAA 90 bp GAGCCACGCGTTTGTGCCGGTCATCGAGGACACGTTTACATTTCCCCAAAAATATTGATGACCTGCGGTTaGATGACCCTGCCGGCGGGC +
Preference number: 5 (lower is better)
Translates to: EPRVCAGHRGHVYISPKILMTCG*MTLPAG
Trigger: GCCCGCCGGCAGGGTCATCAAACCGCAGGTCATCAA...TATTTTTGGGGAAATGTAAACGTGTCCTCGATGACCGGCACAAACGCGTGGCTC
56% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000022262.6
ENSMUST00000224714.2
CDS-3UTR CAA 90 bp CTGCGCCCTAGCCTGCGGCTTTTGTGCTGCCTCTACCACACTCACCTCATTCTCCCTTTGCCACAGACTTaGCACACAAACGGTCTAGCT +
Preference number: 5 (lower is better)
Translates to: LRPSLRLLCCLYHTHLILPLPQT*HTNGLA
Trigger: AGCTAGACCGTTTGTGTGCAAAGTCTGTGGCAAAGG...GAGAATGAGGTGAGTGTGGTAGAGGCAGCACAAAAGCCGCAGGCTAGGGCGCAG
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000224023.2
CDS-3UTR CAA 90 bp GGCTGCCTGAGGAGAAGCGGAGGCCTGGAATTAAATATGTTTCAGCGCACTGGAGCCTGGCGGAAGCCTTaGCCACAGACTTTGCACACA +
Preference number: 5 (lower is better)
Translates to: GCLRRSGGLELNMFQRTGAWRKP*PQTLHT
Trigger: TGTGTGCAAAGTCTGTGGCAAAGGCTTCCGCCAGGC...TCCAGTGCGCTGAAACATATTTAATTCCAGGCCTCCGCTTCTCCTCAGGCAGCC
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000022262.6
ENSMUST00000224714.2
CDS CCA 90 bp AGCTCTGAACTGTCCTGGCTAGGTCCTTTGCTGAGGGGGTGGCGGTaGGACCCACGCTGTCATGAAGTTTGCGCACATGTTTCTTTAAGT +
Preference number: 5 (lower is better)
Translates to: SSELSWLGPLLRGWR*DPRCHEVCAHVSLS
Trigger: ACTTAAAGAAACATGTGCGCAAACTTCATGACAGCGTGGGTCCCACCGCCACCCCCTCAGCAAAGGACCTAGCCAGGACAGTTCAGAGCT
54% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000022262.6
ENSMUST00000224714.2
CDS-3UTR CAA 90 bp TTAAATACGTTTCCTGAATGTACAAAGGTGGGAGCCACGCGTTTGTGCCGGTCACGGGGCTCGGACGTCTaGGCCATGATGCGCTCGATA +
Preference number: 5 (lower is better)
Translates to: LNTFPECTKVGATRLCRSRGSDV*AMMRSI
Trigger: TATCGAGCGCATCATGGCCAAGACGTCCGAGCCCCG...TGACCGGCACAAACGCGTGGCTCCCACCTTTGTACATTCAGGAAACGTATTTAA
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000022262.6
ENSMUST00000224714.2
CDS-3UTR CAA 90 bp AGCACACTCCCCCTCCCCTGCGACCCTCTGAACCCTAAAGATGAGATGAGGGAGTCGCAGGTGAAGTTTTaGGGTTTGCTGTCAGTAGAG +
Preference number: 5 (lower is better)
Translates to: STLPLPCDPLNPKDEMRESQVKF*GLLSVE
Trigger: CTCTACTGACAGCAAACCCAAAAACTTCACCTGCGA...CTCCCTCATCTCATCTTTAGGGTTCAGAGGGTCGCAGGGGAGGGGGAGTGTGCT
54% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 1 transcripts:
ENSMUST00000224023.2
CDS-3UTR CAA 90 bp CGTGAGATCTGCTTGGGTTGGTACAGGGCAGGAAGAACGGACAAGGCAGTAGCTTTTCTGCAAAAACCTTaGCCGCAAGTGGCACACGTG +
Preference number: 5 (lower is better)
Translates to: REICLGWYRAGRTDKAVAFLQKP*PQVAHV
Trigger: CACGTGTGCCACTTGCGGCAAAGGTTTTTGCAGAAA...AGCTACTGCCTTGTCCGTTCTTCCTGCCCTGTACCAACCCAAGCAGATCTCACG
53% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000022262.6
ENSMUST00000224714.2
CDS-3UTR CAA 90 bp AGGAGAAGCGGAGGCCTGGAATTAAATATGTTTCAGCGCACTGGATTTAAATACGTGGGGGCCTGTGCGTaGAGGAGGCCGGATGGGAAA +
Preference number: 5 (lower is better)
Translates to: RRSGGLELNMFQRTGFKYVGACA*RRPDGK
Trigger: TTTCCCATCCGGCCTCCTCAACGCACAGGCCCCCAC...GTATTTAAATCCAGTGCGCTGAAACATATTTAATTCCAGGCCTCCGCTTCTCCT
52% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000022262.6
ENSMUST00000224714.2
CDS-3UTR CAA 90 bp ATTACAAGGTTGAGTGAAGATGGCAGGGGCATCACGCTCTTCTGGGCGCTCACGTCGCAGGTGAAGTTTTaGGGTTTGCTGTCAGTAGAG +
Preference number: 5 (lower is better)
Translates to: ITRLSEDGRGITLFWALTSQVKF*GLLSVE
Trigger: CTCTACTGACAGCAAACCCAAAAACTTCACCTGCGA...CGTGAGCGCCCAGAAGAGCGTGATGCCCCTGCCATCTTCACTCAACCTTGTAAT
52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000022262.6
ENSMUST00000224714.2
CDS-3UTR CAA 90 bp TTCCTGAATGTACAAAGGTGGGAGCCACGCGTTTGTGCCGGTCATCGAGGACACTTACAGATAGTGCATTaGTACTGCTTCTCGCCGCTG +
Preference number: 5 (lower is better)
Translates to: FLNVQRWEPRVCAGHRGHLQIVH*YCFSPL
Trigger: CAGCGGCGAGAAGCAGTACAAATGCACTATCTGTAA...GTGTCCTCGATGACCGGCACAAACGCGTGGCTCCCACCTTTGTACATTCAGGAA
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000022262.6
ENSMUST00000224714.2
CDS-3UTR CAA 90 bp AATAAGTTTATACGTGAGATCTGCTTGGGTTGGTACAGGGCAGGAAGAACGGACAGCGGCGAGCAGAGGTaGAGCAGTTTCTTGCTCTGG +
Preference number: 5 (lower is better)
Translates to: NKFIREICLGWYRAGRTDSGEQR*SSFLLW
Trigger: CCAGAGCAAGAAACTGCTCAACCTCTGCTCGCCGCT...GTCCGTTCTTCCTGCCCTGTACCAACCCAAGCAGATCTCACGTATAAACTTATT
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000022262.6
ENSMUST00000224714.2
CDS-3UTR CAA 90 bp AATAAGTTTATACGTGAGATCTGCTTGGGTTGGTACAGGGCAGGAAGAACGGACGCCAGGCTGGCCAGTTaGGCGTTCTCCAGCAGAAAA +
Preference number: 5 (lower is better)
Translates to: NKFIREICLGWYRAGRTDARLAS*AFSSRK
Trigger: TTTTCTGCTGGAGAACGCCAAACTGGCCAGCCTGGC...GTCCGTTCTTCCTGCCCTGTACCAACCCAAGCAGATCTCACGTATAAACTTATT
51% GC, longest homopolymer 4 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000022262.6
ENSMUST00000224714.2
CDS-3UTR CAA 90 bp GGCTGCCTGAGGAGAAGCGGAGGCCTGGAATTAAATATGTTTCAGCGCACTGGATCGCAGGTGAAGTTTTaGGGTTTGCTGTCAGTAGAG +
Preference number: 5 (lower is better)
Translates to: GCLRRSGGLELNMFQRTGSQVKF*GLLSVE
Trigger: CTCTACTGACAGCAAACCCAAAAACTTCACCTGCGA...TCCAGTGCGCTGAAACATATTTAATTCCAGGCCTCCGCTTCTCCTCAGGCAGCC
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000022262.6
ENSMUST00000224714.2
CDS-3UTR CAA 90 bp CGTGAGATCTGCTTGGGTTGGTACAGGGCAGGAAGAACGGACAAGGCAGTAGCTCTTGTAGTTCCCTTTTaGGTGAAAGCCTTTGCCACA +
Preference number: 5 (lower is better)
Translates to: REICLGWYRAGRTDKAVALVVPF*VKAFAT
Trigger: TGTGGCAAAGGCTTTCACCAAAAAGGGAACTACAAG...AGCTACTGCCTTGTCCGTTCTTCCTGCCCTGTACCAACCCAAGCAGATCTCACG
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000022262.6
ENSMUST00000224714.2
CDS TCA 90 bp GCTAGGTCCTTTGCTGAGGGGGTGGCGGTGGGACCCACGCTGTCATaGAGTTTGCGCACATGTTTCTTTAAGTCAAAGTTTCTGCAAAAA +
Preference number: 5 (lower is better)
Translates to: ARSFAEGVAVGPTLS*SLRTCFFKSKFLQK
Trigger: TTTTTGCAGAAACTTTGACTTAAAGAAACATGTGCGCAAACTTCATGACAGCGTGGGTCCCACCGCCACCCCCTCAGCAAAGGACCTAGC
50% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000022262.6
ENSMUST00000224714.2
CDS GCA 90 bp CCTTTGCTGAGGGGGTGGCGGTGGGACCCACGCTGTCATGAAGTTTaGGCACATGTTTCTTTAAGTCAAAGTTTCTGCAAAAACCTTTGC +
Preference number: 5 (lower is better)
Translates to: PLLRGWRWDPRCHEV*AHVSLSQSFCKNLC
Trigger: GCAAAGGTTTTTGCAGAAACTTTGACTTAAAGAAACATGTGCGCAAACTTCATGACAGCGTGGGTCCCACCGCCACCCCCTCAGCAAAGG
50% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 2 transcripts:
ENSMUST00000022262.6
ENSMUST00000224714.2
CDS-3UTR CAA 90 bp GAGCCACGCGTTTGTGCCGGTCATCGAGGACACGTTTACATTTCCCCAAAAATACCTTTGCCACAGACTTaGCACACAAACGGTCTAGCT +
Preference number: 5 (lower is better)
Translates to: EPRVCAGHRGHVYISPKIPLPQT*HTNGLA
Trigger: AGCTAGACCGTTTGTGTGCAAAGTCTGTGGCAAAGG...TATTTTTGGGGAAATGTAAACGTGTCCTCGATGACCGGCACAAACGCGTGGCTC
50% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000022262.6
ENSMUST00000224714.2
CDS-3UTR CAA 90 bp AGGAGAAGCGGAGGCCTGGAATTAAATATGTTTCAGCGCACTGGATTTAAATACCAGCACACGCCACAGTaGGTTTTGCACAAGCCGCTG +
Preference number: 5 (lower is better)
Translates to: RRSGGLELNMFQRTGFKYQHTPQ*VLHKPL
Trigger: CAGCGGCTTGTGCAAAACCAACTGTGGCGTGTGCTG...GTATTTAAATCCAGTGCGCTGAAACATATTTAATTCCAGGCCTCCGCTTCTCCT
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000022262.6
ENSMUST00000224714.2
CDS-3UTR CAA 90 bp AGCGGAGGCCTGGAATTAAATATGTTTCAGCGCACTGGATTTAAATACGTTTCCAGCCCCACAGCCTGGTaGATGACCTGCGGTTTGATG +
Preference number: 5 (lower is better)
Translates to: SGGLELNMFQRTGFKYVSSPTAW*MTCGLM
Trigger: CATCAAACCGCAGGTCATCAACCAGGCTGTGGGGCT...GGAAACGTATTTAAATCCAGTGCGCTGAAACATATTTAATTCCAGGCCTCCGCT
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000022262.6
ENSMUST00000224714.2
CDS-3UTR CAA 90 bp AGGAGAAGCGGAGGCCTGGAATTAAATATGTTTCAGCGCACTGGATTTAAATACGCCAGGCTGGCCAGTTaGGCGTTCTCCAGCAGAAAA +
Preference number: 5 (lower is better)
Translates to: RRSGGLELNMFQRTGFKYARLAS*AFSSRK
Trigger: TTTTCTGCTGGAGAACGCCAAACTGGCCAGCCTGGC...GTATTTAAATCCAGTGCGCTGAAACATATTTAATTCCAGGCCTCCGCTTCTCCT
49% GC, longest homopolymer 4 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000022262.6
ENSMUST00000224714.2
CDS-3UTR CAA 90 bp GAGCCACGCGTTTGTGCCGGTCATCGAGGACACGTTTACATTTCCCCAAAAATATTACAGATAGTGCATTaGTACTGCTTCTCGCCGCTG +
Preference number: 5 (lower is better)
Translates to: EPRVCAGHRGHVYISPKILQIVH*YCFSPL
Trigger: CAGCGGCGAGAAGCAGTACAAATGCACTATCTGTAA...TATTTTTGGGGAAATGTAAACGTGTCCTCGATGACCGGCACAAACGCGTGGCTC
49% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000022262.6
ENSMUST00000224714.2
CDS-3UTR CAA 90 bp TTGAGTCATATATATGTAATATTCCGTGTTCGCTTGTACAGGAGAGATTACAAGGTGGGGGCCTGTGCGTaGAGGAGGCCGGATGGGAAA +
Preference number: 5 (lower is better)
Translates to: LSHIYVIFRVRLYRRDYKVGACA*RRPDGK
Trigger: TTTCCCATCCGGCCTCCTCAACGCACAGGCCCCCAC...CTTGTAATCTCTCCTGTACAAGCGAACACGGAATATTACATATATATGACTCAA
48% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000022262.6
ENSMUST00000224714.2
CDS-3UTR CAA 90 bp GAGCCACGCGTTTGTGCCGGTCATCGAGGACACGTTTACATTTCCCCAAAAATACTTGTAGTTCCCTTTTaGGTGAAAGCCTTTGCCACA +
Preference number: 5 (lower is better)
Translates to: EPRVCAGHRGHVYISPKILVVPF*VKAFAT
Trigger: TGTGGCAAAGGCTTTCACCAAAAAGGGAACTACAAG...TATTTTTGGGGAAATGTAAACGTGTCCTCGATGACCGGCACAAACGCGTGGCTC
48% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 2 transcripts:
ENSMUST00000022262.6
ENSMUST00000224714.2
CDS-3UTR CAA 90 bp GAGTCATATATATGTAATATTCCGTGTTCGCTTGTACAGGAGAGATTACAAGGTAGCGGCGAGCAGAGGTaGAGCAGTTTCTTGCTCTGG +
Preference number: 5 (lower is better)
Translates to: ESYICNIPCSLVQERLQGSGEQR*SSFLLW
Trigger: CCAGAGCAAGAAACTGCTCAACCTCTGCTCGCCGCT...ACCTTGTAATCTCTCCTGTACAAGCGAACACGGAATATTACATATATATGACTC
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000022262.6
ENSMUST00000224714.2
CDS-3UTR CAA 90 bp GAGTCATATATATGTAATATTCCGTGTTCGCTTGTACAGGAGAGATTACAAGGTGCCTGGCGGAAGCCTTaGCCACAGACTTTGCACACA +
Preference number: 5 (lower is better)
Translates to: ESYICNIPCSLVQERLQGAWRKP*PQTLHT
Trigger: TGTGTGCAAAGTCTGTGGCAAAGGCTTCCGCCAGGC...ACCTTGTAATCTCTCCTGTACAAGCGAACACGGAATATTACATATATATGACTC
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000022262.6
ENSMUST00000224714.2
CDS-3UTR CAA 90 bp TTGAGTCATATATATGTAATATTCCGTGTTCGCTTGTACAGGAGAGATTACAAGATGCGGATGTGCGTGTaGAGCGTGGAGCTGCGATTG +
Preference number: 5 (lower is better)
Translates to: LSHIYVIFRVRLYRRDYKMRMCV*SVELRL
Trigger: CAATCGCAGCTCCACGCTCAACACGCACATCCGCAT...CTTGTAATCTCTCCTGTACAAGCGAACACGGAATATTACATATATATGACTCAA
44% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000022262.6
ENSMUST00000224714.2
CDS-3UTR CAA 90 bp GAGTCATATATATGTAATATTCCGTGTTCGCTTGTACAGGAGAGATTACAAGGTTTTCTGCAAAAACCTTaGCCGCAAGTGGCACACGTG +
Preference number: 5 (lower is better)
Translates to: ESYICNIPCSLVQERLQGFLQKP*PQVAHV
Trigger: CACGTGTGCCACTTGCGGCAAAGGTTTTTGCAGAAA...ACCTTGTAATCTCTCCTGTACAAGCGAACACGGAATATTACATATATATGACTC
42% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000022262.6
ENSMUST00000224714.2
CDS CAA 90 bp ACCCTGCCGGCGGGCAGCGCAGAAGGCGCGAGGCCCAGTTCGGCCTaGCAGCACACGCCACAGTTGGTTTTGCACAAGCCGCTGGCGCCG +
Preference number: 6 (lower is better)
Translates to: TLPAGSAEGARPSSA*QHTPQLVLHKPLAP
Trigger: CGGCGCCAGCGGCTTGTGCAAAACCAACTGTGGCGTGTGCTGCAAGGCCGAACTGGGCCTCGCGCCTTCTGCGCTGCCCGCCGGCAGGGT
70% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000022262.6
ENSMUST00000224023.2
ENSMUST00000224714.2
CDS CAA 72 bp CCCAGTTCGGCCTTGCAGCACACGCCACAGTTGGTTTaGCACAAGCCGCTGGCGCCGCACACTGGGGCCCCC +
Preference number: 6 (lower is better)
Translates to: PSSALQHTPQLV*HKPLAPHTGAP
Trigger: GGGGGCCCCAGTGTGCGGCGCCAGCGGCTTGTGCAAAACCAACTGTGGCGTGTGCTGCAAGGCCGAACTGGG
68% GC, longest homopolymer 5 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000022262.6
ENSMUST00000224023.2
ENSMUST00000224714.2
CDS CCA 72 bp CGAGGCCCAGTTCGGCCTTGCAGCACACGCCACAGTTaGTTTTGCACAAGCCGCTGGCGCCGCACACTGGGG +
Preference number: 6 (lower is better)
Translates to: RGPVRPCSTRHS*FCTSRWRRTLG
Trigger: CCCCAGTGTGCGGCGCCAGCGGCTTGTGCAAAACCAACTGTGGCGTGTGCTGCAAGGCCGAACTGGGCCTCG
67% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000022262.6
ENSMUST00000224023.2
ENSMUST00000224714.2
CDS CCA 72 bp CAGGGAAGTGGGGGCCTGTGCGTTGAGGAGGCCGGATaGGAAAAGGTGGCCTCCGAGGAGCTCCGAAGGTGG +
Preference number: 6 (lower is better)
Translates to: QGSGGLCVEEAG*EKVASEELRRW
Trigger: CCACCTTCGGAGCTCCTCGGAGGCCACCTTTTCCCATCCGGCCTCCTCAACGCACAGGCCCCCACTTCCCTG
67% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000022262.6
ENSMUST00000224023.2
ENSMUST00000224714.2
CDS CAA 72 bp GCGAGGCCCAGTTCGGCCTTGCAGCACACGCCACAGTaGGTTTTGCACAAGCCGCTGGCGCCGCACACTGGG +
Preference number: 6 (lower is better)
Translates to: ARPSSALQHTPQ*VLHKPLAPHTG
Trigger: CCCAGTGTGCGGCGCCAGCGGCTTGTGCAAAACCAACTGTGGCGTGTGCTGCAAGGCCGAACTGGGCCTCGC
67% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000022262.6
ENSMUST00000224023.2
ENSMUST00000224714.2
CDS CCA 72 bp TGGCGCATGCAAGCGCTCCTTATGGGGATAGGAAGCTaGGTGGGGGAACTTGTCCGCAGCCAGGCTGGCCAG +
Preference number: 6 (lower is better)
Translates to: WRMQALLMGIGS*VGELVRSQAGQ
Trigger: CTGGCCAGCCTGGCTGCGGACAAGTTCCCCCACCCAGCTTCCTATCCCCATAAGGAGCGCTTGCATGCGCCA
64% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000022262.6
ENSMUST00000224023.2
ENSMUST00000224714.2
CDS CAA 90 bp AGAGGGATCATACAGGGCAGCGGCGAGCAGAGGTTGAGCAGTTTCTaGCTCTGGCTGCTGTCTGCCTCTAACGCAGCAGGCCGGGGCTCG +
Preference number: 6 (lower is better)
Translates to: RGIIQGSGEQRLSSF*LWLLSASNAAGRGS
Trigger: CGAGCCCCGGCCTGCTGCGTTAGAGGCAGACAGCAGCCAGAGCAAGAAACTGCTCAACCTCTGCTCGCCGCTGCCCTGTATGATCCCTCT
62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000022262.6
ENSMUST00000224023.2
ENSMUST00000224714.2
CDS TCA 72 bp CCGCCCGGAGGCTGCTCTTCCAGAACTCCGAGTAACTaGGCAGCGTCTTGGACGGCACCTCGTAGCCTAGAG +
Preference number: 6 (lower is better)
Translates to: PPGGCSSRTPSN*AASWTAPRSLE
Trigger: CTCTAGGCTACGAGGTGCCGTCCAAGACGCTGCTCAGTTACTCGGAGTTCTGGAAGAGCAGCCTCCGGGCGG
62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000022262.6
ENSMUST00000224023.2
ENSMUST00000224714.2
CDS CAA 72 bp GGCCGGGGCTCGAAAGGCGCTCGGGGCTCGGACGTCTaGGCCATGATGCGCTCGATAGAGAAAGCTAGTGTT +
Preference number: 6 (lower is better)
Translates to: GRGSKGARGSDV*AMMRSIEKASV
Trigger: AACACTAGCTTTCTCTATCGAGCGCATCATGGCCAAGACGTCCGAGCCCCGAGCGCCTTTCGAGCCCCGGCC
62% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000022262.6
ENSMUST00000224023.2
ENSMUST00000224714.2
CDS TCA 72 bp GCTCCGAAGGTGGGTAAGCGGTGGAGTCCAGGTAGTTaGAGTAGTAGAGAGAGCCGCTGGCAGGCAGCCCCA +
Preference number: 6 (lower is better)
Translates to: APKVGKRWSPGS*SSRESRWQAAP
Trigger: TGGGGCTGCCTGCCAGCGGCTCTCTCTACTACTTCAACTACCTGGACTCCACCGCTTACCCACCTTCGGAGC
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000022262.6
ENSMUST00000224023.2
ENSMUST00000224714.2
CDS CCA 72 bp AGGAAGCTGGGTGGGGGAACTTGTCCGCAGCCAGGCTaGCCAGTTTGGCGTTCTCCAGCAGAAAAAGCTTGG +
Preference number: 6 (lower is better)
Translates to: RKLGGGTCPQPG*PVWRSPAEKAW
Trigger: CCAAGCTTTTTCTGCTGGAGAACGCCAAACTGGCCAGCCTGGCTGCGGACAAGTTCCCCCACCCAGCTTCCT
60% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 3 transcripts:
ENSMUST00000022262.6
ENSMUST00000224023.2
ENSMUST00000224714.2
CDS CCA 72 bp CTGTCCTGGCTAGGTCCTTTGCTGAGGGGGTGGCGGTaGGACCCACGCTGTCATGAAGTTTGCGCACATGTT +
Preference number: 6 (lower is better)
Translates to: LSWLGPLLRGWR*DPRCHEVCAHV
Trigger: AACATGTGCGCAAACTTCATGACAGCGTGGGTCCCACCGCCACCCCCTCAGCAAAGGACCTAGCCAGGACAG
60% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000022262.6
ENSMUST00000224714.2
CDS CCA 72 bp TCTGAACTGTCCTGGCTAGGTCCTTTGCTGAGGGGGTaGCGGTGGGACCCACGCTGTCATGAAGTTTGCGCA +
Preference number: 6 (lower is better)
Translates to: SELSWLGPLLRG*RWDPRCHEVCA
Trigger: TGCGCAAACTTCATGACAGCGTGGGTCCCACCGCCACCCCCTCAGCAAAGGACCTAGCCAGGACAGTTCAGA
60% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000022262.6
ENSMUST00000224714.2
CDS CAA 90 bp CCTAGAGGCTGGAGAGGGATCATACAGGGCAGCGGCGAGCAGAGGTaGAGCAGTTTCTTGCTCTGGCTGCTGTCTGCCTCTAACGCAGCA +
Preference number: 6 (lower is better)
Translates to: PRGWRGIIQGSGEQR*SSFLLWLLSASNAA
Trigger: TGCTGCGTTAGAGGCAGACAGCAGCCAGAGCAAGAAACTGCTCAACCTCTGCTCGCCGCTGCCCTGTATGATCCCTCTCCAGCCTCTAGG
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000022262.6
ENSMUST00000224023.2
ENSMUST00000224714.2
CDS TCA 72 bp GGAGAGGGATCATACAGGGCAGCGGCGAGCAGAGGTTaGGCAGTTTCTTGCTCTGGCTGCTGTCTGCCTCTA +
Preference number: 6 (lower is better)
Translates to: GEGSYRAAASRG*AVSCSGCCLPL
Trigger: TAGAGGCAGACAGCAGCCAGAGCAAGAAACTGCTCAACCTCTGCTCGCCGCTGCCCTGTATGATCCCTCTCC
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000022262.6
ENSMUST00000224023.2
ENSMUST00000224714.2
CDS CAA 72 bp TGGAGAGGGATCATACAGGGCAGCGGCGAGCAGAGGTaGAGCAGTTTCTTGCTCTGGCTGCTGTCTGCCTCT +
Preference number: 6 (lower is better)
Translates to: WRGIIQGSGEQR*SSFLLWLLSAS
Trigger: AGAGGCAGACAGCAGCCAGAGCAAGAAACTGCTCAACCTCTGCTCGCCGCTGCCCTGTATGATCCCTCTCCA
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000022262.6
ENSMUST00000224023.2
ENSMUST00000224714.2
CDS CCA 72 bp GGATGGGAAAAGGTGGCCTCCGAGGAGCTCCGAAGGTaGGTAAGCGGTGGAGTCCAGGTAGTTGAAGTAGTA +
Preference number: 6 (lower is better)
Translates to: GWEKVASEELRR*VSGGVQVVEVV
Trigger: TACTACTTCAACTACCTGGACTCCACCGCTTACCCACCTTCGGAGCTCCTCGGAGGCCACCTTTTCCCATCC
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000022262.6
ENSMUST00000224023.2
ENSMUST00000224714.2
CDS TCA 72 bp TTTGCTGAGGGGGTGGCGGTGGGACCCACGCTGTCATaGAGTTTGCGCACATGTTTCTTTAAGTCAAAGTTT +
Preference number: 6 (lower is better)
Translates to: FAEGVAVGPTLS*SLRTCFFKSKF
Trigger: AAACTTTGACTTAAAGAAACATGTGCGCAAACTTCATGACAGCGTGGGTCCCACCGCCACCCCCTCAGCAAA
50% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000022262.6
ENSMUST00000224714.2