RADAR | Search for sensor designs | Human genes | Mouse genes | Code

Pregenerated sensors for FEZF1 (Mus musculus)

Ensembl gene IDs: ENSMUSG00000029697

Ensembl transcript IDs: ENSMUST00000031709.7

Found 79 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).

Type Sensor Details
3UTR CAA 90 bp CATCCGGTCCTCCCGAAAGTGCGGGGACCCAACATGCCCCAGGTTTaGCAGGCGAGCTTGGACCAAGAAGTCCGCTCTAGTCTGCGGACC +
Preference number: 2 (lower is better)
Translates to: HPVLPKVRGPNMPQV*QASLDQEVRSSLRT
Trigger: GGTCCGCAGACTAGAGCGGACTTCTTGGTCCAAGCTCGCCTGCAAAACCTGGGGCATGTTGGGTCCCCGCACTTTCGGGAGGACCGGATG
62% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000031709.7
3UTR-3UTR TCA 90 bp GCCTATGTAGAATATAATACACAAAACCATTTAGCAGGTGCATGCAAGAGGCGGTGCGGACCTCTGCAGTaGGGGCCCTCAGGTTGGGGT +
Preference number: 2 (lower is better)
Translates to: AYVEYNTQNHLAGACKRRCGPLQ*GPSGWG
Trigger: ACCCCAACCTGAGGGCCCTCACTGCAGAGGTCCGCA...CCGCCTCTTGCATGCACCTGCTAAATGGTTTTGTGTATTATATTCTACATAGGC
52% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 1 transcripts:
ENSMUST00000031709.7
3UTR-3UTR GCA 90 bp ATGTATGTGCTCACAAATGTTGACCGCACCTTCACAGGCACGCACACACTTCTGAAACCATTTAGCAGGTaGATGCAAGAGGCGGAAAGG +
Preference number: 2 (lower is better)
Translates to: MYVLTNVDRTFTGTHTLLKPFSR*MQEAER
Trigger: CCTTTCCGCCTCTTGCATGCACCTGCTAAATGGTTT...CAGAAGTGTGTGCGTGCCTGTGAAGGTGCGGTCAACATTTGTGAGCACATACAT
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000031709.7
3UTR-3UTR TCA 90 bp ACAAATGTTGACCGCACCTTCACAGGCACGCACACACTTCTGTGTGTATATAGATCTCTCCACCCGAGATaGAAAGTCTTTTCAACTCAA +
Preference number: 2 (lower is better)
Translates to: TNVDRTFTGTHTLLCVYRSLHPR*KVFSTQ
Trigger: TTGAGTTGAAAAGACTTTTCATCTCGGGTGGAGAGA...TCTATATACACACAGAAGTGTGTGCGTGCCTGTGAAGGTGCGGTCAACATTTGT
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000031709.7
3UTR-3UTR CAA 90 bp GCCTATGTAGAATATAATACACAAAACCATTTAGCAGGTGCATGCAAGAGGCGGAACATGCCCCAGGTTTaGCAGGCGAGCTTGGACCAA +
Preference number: 3 (lower is better)
Translates to: AYVEYNTQNHLAGACKRRNMPQV*QASLDQ
Trigger: TTGGTCCAAGCTCGCCTGCAAAACCTGGGGCATGTT...CCGCCTCTTGCATGCACCTGCTAAATGGTTTTGTGTATTATATTCTACATAGGC
48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000031709.7
3UTR TCA 72 bp GGGAAGGAGAAAATTATAAACGATCAGCAGGCATTTTaGGACGGCAGAAACGACACAATGGAAATATTTACA +
Preference number: 3 (lower is better)
Translates to: GKEKIINDQQAF*DGRNDTMEIFT
Trigger: TGTAAATATTTCCATTGTGTCGTTTCTGCCGTCTCAAAATGCCTGCTGATCGTTTATAATTTTCTCCTTCCC
39% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000031709.7
CDS-3UTR TCA 90 bp CCCAACATGCCCCAGGTTTTGCAGGCGAGCTTGGACCAAGAAGTCCGCTCTAGTGCAGGTCGCTGCAGCTaGACGCCGGCGCAGAGGGCG +
Preference number: 4 (lower is better)
Translates to: PNMPQVLQASLDQEVRSSAGRCS*TPAQRA
Trigger: CGCCCTCTGCGCCGGCGTTCAGCTGCAGCGACCTGC...ACTAGAGCGGACTTCTTGGTCCAAGCTCGCCTGCAAAACCTGGGGCATGTTGGG
64% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000031709.7
3UTR CAA 72 bp CTCCCGAAAGTGCGGGGACCCAACATGCCCCAGGTTTaGCAGGCGAGCTTGGACCAAGAAGTCCGCTCTAGT +
Preference number: 4 (lower is better)
Translates to: LPKVRGPNMPQV*QASLDQEVRSS
Trigger: ACTAGAGCGGACTTCTTGGTCCAAGCTCGCCTGCAAAACCTGGGGCATGTTGGGTCCCCGCACTTTCGGGAG
60% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000031709.7
CDS-3UTR GCA 90 bp GTGCTCACAAATGTTGACCGCACCTTCACAGGCACGCACACACTTCTGTGTGTATTGGGCACGGCTCCCTaGAGGAAGTGGGGGACCGGC +
Preference number: 4 (lower is better)
Translates to: VLTNVDRTFTGTHTLLCVLGTAP*RKWGTG
Trigger: GCCGGTCCCCCACTTCCTGCAGGGAGCCGTGCCCAA...TACACACAGAAGTGTGTGCGTGCCTGTGAAGGTGCGGTCAACATTTGTGAGCAC
59% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000031709.7
CDS-3UTR TCA 90 bp CCCAACATGCCCCAGGTTTTGCAGGCGAGCTTGGACCAAGAAGTCCGCTCTAGTAGGGCACCCATGGCGTaGAACGAAGAGTGGTTGACC +
Preference number: 4 (lower is better)
Translates to: PNMPQVLQASLDQEVRSSRAPMA*NEEWLT
Trigger: GGTCAACCACTCTTCGTTTCACGCCATGGGTGCCCT...ACTAGAGCGGACTTCTTGGTCCAAGCTCGCCTGCAAAACCTGGGGCATGTTGGG
58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000031709.7
CDS-3UTR GCA 90 bp CCCAACATGCCCCAGGTTTTGCAGGCGAGCTTGGACCAAGAAGTCCGCTCTAGTCCTCCAAACTCGCCTTaGGGGGCTCTGAGCCATTCA +
Preference number: 4 (lower is better)
Translates to: PNMPQVLQASLDQEVRSSPPNSP*GALSHS
Trigger: TGAATGGCTCAGAGCCCCGCAAGGCGAGTTTGGAGG...ACTAGAGCGGACTTCTTGGTCCAAGCTCGCCTGCAAAACCTGGGGCATGTTGGG
58% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 1 transcripts:
ENSMUST00000031709.7
CDS-3UTR CCA 90 bp ACAAATGTTGACCGCACCTTCACAGGCACGCACACACTTCTGTGTGTATATAGAACGCTCGCAGCCGGGTaGCACGGGCCGTCACCTCGG +
Preference number: 4 (lower is better)
Translates to: TNVDRTFTGTHTLLCVYRTLAAG*HGPSPR
Trigger: CCGAGGTGACGGCCCGTGCCACCCGGCTGCGAGCGT...TCTATATACACACAGAAGTGTGTGCGTGCCTGTGAAGGTGCGGTCAACATTTGT
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000031709.7
CDS-3UTR CCA 90 bp GGGACCCAACATGCCCCAGGTTTTGCAGGCGAGCTTGGACCAAGAAGTCCGCTCATACGTTTTGGGCTGTaGGTGCAAAGGGGAACTGAG +
Preference number: 4 (lower is better)
Translates to: GTQHAPGFAGELGPRSPLIRFGL*VQRGTE
Trigger: CTCAGTTCCCCTTTGCACCCACAGCCCAAAACGTAT...GAGCGGACTTCTTGGTCCAAGCTCGCCTGCAAAACCTGGGGCATGTTGGGTCCC
57% GC, longest homopolymer 4 nt, total homopolymer stretches 16 nt.
Matches the following 1 transcripts:
ENSMUST00000031709.7
CDS-3UTR TCA 90 bp TGTATTATGTATGTGCTCACAAATGTTGACCGCACCTTCACAGGCACGCACACACACTGGTGGCCTTGGTaGAGCCCGGATGGCAGAGGC +
Preference number: 4 (lower is better)
Translates to: CIMYVLTNVDRTFTGTHTHWWPW*SPDGRG
Trigger: GCCTCTGCCATCCGGGCTTCACCAAGGCCACCAGTG...TGTGTGCGTGCCTGTGAAGGTGCGGTCAACATTTGTGAGCACATACATAATACA
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000031709.7
CDS-3UTR TCA 90 bp GTGCTCACAAATGTTGACCGCACCTTCACAGGCACGCACACACTTCTGTGTGTAAGGGGATCGACGAGTTaGGATGCAGAGAGTGCTTGG +
Preference number: 4 (lower is better)
Translates to: VLTNVDRTFTGTHTLLCVRGSTS*DAESAW
Trigger: CCAAGCACTCTCTGCATCTCAACTCGTCGATCCCCT...TACACACAGAAGTGTGTGCGTGCCTGTGAAGGTGCGGTCAACATTTGTGAGCAC
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000031709.7
CDS-3UTR GCA 90 bp ATGTATGTGCTCACAAATGTTGACCGCACCTTCACAGGCACGCACACACTTCTGATGTGCTCATCACGTTaGCCCGAGCTGGAGCAGTCG +
Preference number: 4 (lower is better)
Translates to: MYVLTNVDRTFTGTHTLLMCSSR*PELEQS
Trigger: CGACTGCTCCAGCTCGGGGCAACGTGATGAGCACAT...CAGAAGTGTGTGCGTGCCTGTGAAGGTGCGGTCAACATTTGTGAGCACATACAT
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000031709.7
CDS-3UTR CCA 90 bp GCCTATGTAGAATATAATACACAAAACCATTTAGCAGGTGCATGCAAGAGGCGGTTGGTGAAGCCCGGATaGCAGAGGCCCGGGAGGCGG +
Preference number: 4 (lower is better)
Translates to: AYVEYNTQNHLAGACKRRLVKPG*QRPGRR
Trigger: CCGCCTCCCGGGCCTCTGCCATCCGGGCTTCACCAA...CCGCCTCTTGCATGCACCTGCTAAATGGTTTTGTGTATTATATTCTACATAGGC
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000031709.7
CDS-3UTR TCA 90 bp ATGTATGTGCTCACAAATGTTGACCGCACCTTCACAGGCACGCACACACTTCTGCCTGGGACAGGTCTTTaGAAGCTACTCCCGAAGGGA +
Preference number: 4 (lower is better)
Translates to: MYVLTNVDRTFTGTHTLLPGTGL*KLLPKG
Trigger: TCCCTTCGGGAGTAGCTTTCAAAGACCTGTCCCAGG...CAGAAGTGTGTGCGTGCCTGTGAAGGTGCGGTCAACATTTGTGAGCACATACAT
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000031709.7
CDS-3UTR TCA 90 bp TGTATTATGTATGTGCTCACAAATGTTGACCGCACCTTCACAGGCACGCACACACAGGGGTGCGCGCCATaGTTCGTTCGATGGAGAAAG +
Preference number: 4 (lower is better)
Translates to: CIMYVLTNVDRTFTGTHTQGCAP*FVRWRK
Trigger: CTTTCTCCATCGAACGAATCATGGCGCGCACCCCTG...TGTGTGCGTGCCTGTGAAGGTGCGGTCAACATTTGTGAGCACATACATAATACA
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000031709.7
CDS-3UTR CCA 90 bp ATGTATGTGCTCACAAATGTTGACCGCACCTTCACAGGCACGCACACACTTCTGCGGCTAAATACGTTTTaGGCTGTGGGTGCAAAGGGG +
Preference number: 4 (lower is better)
Translates to: MYVLTNVDRTFTGTHTLLRLNTF*AVGAKG
Trigger: CCCCTTTGCACCCACAGCCCAAAACGTATTTAGCCG...CAGAAGTGTGTGCGTGCCTGTGAAGGTGCGGTCAACATTTGTGAGCACATACAT
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000031709.7
CDS-3UTR GCA 90 bp TGTATTATGTATGTGCTCACAAATGTTGACCGCACCTTCACAGGCACGCACACATTGAGATGCAGAGAGTaGTTGGGGTCCCCTTTGGGC +
Preference number: 4 (lower is better)
Translates to: CIMYVLTNVDRTFTGTHTLRCRE*LGSPLG
Trigger: GCCCAAAGGGGACCCCAAGCACTCTCTGCATCTCAA...TGTGTGCGTGCCTGTGAAGGTGCGGTCAACATTTGTGAGCACATACATAATACA
50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000031709.7
CDS-3UTR CCA 90 bp GCCTATGTAGAATATAATACACAAAACCATTTAGCAGGTGCATGCAAGAGGCGGGATGCAGAGAGTGCTTaGGGTCCCCTTTGGGCACGG +
Preference number: 4 (lower is better)
Translates to: AYVEYNTQNHLAGACKRRDAESA*GPLWAR
Trigger: CCGTGCCCAAAGGGGACCCCAAGCACTCTCTGCATC...CCGCCTCTTGCATGCACCTGCTAAATGGTTTTGTGTATTATATTCTACATAGGC
50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000031709.7
CDS-3UTR TCA 90 bp TGTATTATGTATGTGCTCACAAATGTTGACCGCACCTTCACAGGCACGCACACATGTGCATGTGGAAGGTaGGGTTGTACACCTGGTGGA +
Preference number: 4 (lower is better)
Translates to: CIMYVLTNVDRTFTGTHTCACGR*GCTPGG
Trigger: TCCACCAGGTGTACAACCTCACCTTCCACATGCACA...TGTGTGCGTGCCTGTGAAGGTGCGGTCAACATTTGTGAGCACATACATAATACA
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000031709.7
CDS-3UTR CCA 90 bp ACAAATGTTGACCGCACCTTCACAGGCACGCACACACTTCTGTGTGTATATAGATTTGGGCTTGGCATTTaGAGAGCCGCGGCTGAAATC +
Preference number: 4 (lower is better)
Translates to: TNVDRTFTGTHTLLCVYRFGLGI*RAAAEI
Trigger: GATTTCAGCCGCGGCTCTCCAAATGCCAAGCCCAAA...TCTATATACACACAGAAGTGTGTGCGTGCCTGTGAAGGTGCGGTCAACATTTGT
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000031709.7
CDS-3UTR GCA 90 bp CAAATGTTGACCGCACCTTCACAGGCACGCACACACTTCTGTGTGTATATAGAACTTACCAGCTTGTACTaGTGTAGTGGCAATGCGTCG +
Preference number: 4 (lower is better)
Translates to: QMLTAPSQARTHFCVYIELTSLY*CSGNAS
Trigger: CGACGCATTGCCACTACAGCAGTACAAGCTGGTAAG...TTCTATATACACACAGAAGTGTGTGCGTGCCTGTGAAGGTGCGGTCAACATTTG
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000031709.7
CDS-3UTR GCA 90 bp GTTAGTGCCTATGTAGAATATAATACACAAAACCATTTAGCAGGTGCATGCAAGGGGTCAGCCCCAGGCTaGTGTCGTGTAGCTTGCGGA +
Preference number: 4 (lower is better)
Translates to: VSAYVEYNTQNHLAGACKGSAPG*CRVACG
Trigger: TCCGCAAGCTACACGACAGCAGCCTGGGGCTGACCC...CTTGCATGCACCTGCTAAATGGTTTTGTGTATTATATTCTACATAGGCACTAAC
48% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 1 transcripts:
ENSMUST00000031709.7
CDS-3UTR TCA 90 bp TGTATTATGTATGTGCTCACAAATGTTGACCGCACCTTCACAGGCACGCACACACGCAGACTTCACAAGTaGAAACTTTGGGCTTGGCAT +
Preference number: 4 (lower is better)
Translates to: CIMYVLTNVDRTFTGTHTRRLHK*KLWAWH
Trigger: ATGCCAAGCCCAAAGTTTTCACTTGTGAAGTCTGCG...TGTGTGCGTGCCTGTGAAGGTGCGGTCAACATTTGTGAGCACATACATAATACA
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000031709.7
CDS-3UTR TCA 90 bp CAAATGTTGACCGCACCTTCACAGGCACGCACACACTTCTGTGTGTATATAGAATGCAGATATTGCACTTaGACTGTTTCTCCCCGCTGT +
Preference number: 4 (lower is better)
Translates to: QMLTAPSQARTHFCVYIECRYCT*TVSPRC
Trigger: ACAGCGGGGAGAAACAGTTCAAGTGCAATATCTGCA...TTCTATATACACACAGAAGTGTGTGCGTGCCTGTGAAGGTGCGGTCAACATTTG
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000031709.7
CDS-3UTR GCA 90 bp GCCTATGTAGAATATAATACACAAAACCATTTAGCAGGTGCATGCAAGAGGCGGATCGACGAGTTGAGATaGAGAGAGTGCTTGGGGTCC +
Preference number: 4 (lower is better)
Translates to: AYVEYNTQNHLAGACKRRIDELR*RECLGS
Trigger: GGACCCCAAGCACTCTCTGCATCTCAACTCGTCGAT...CCGCCTCTTGCATGCACCTGCTAAATGGTTTTGTGTATTATATTCTACATAGGC
47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000031709.7
CDS-3UTR TCA 90 bp GTTAGTGCCTATGTAGAATATAATACACAAAACCATTTAGCAGGTGCATGCAAGGGTGCAAAGGGGAACTaGGAAAGTAGGAGGCCACCG +
Preference number: 4 (lower is better)
Translates to: VSAYVEYNTQNHLAGACKGAKGN*ESRRPP
Trigger: CGGTGGCCTCCTACTTTCTCAGTTCCCCTTTGCACC...CTTGCATGCACCTGCTAAATGGTTTTGTGTATTATATTCTACATAGGCACTAAC
46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000031709.7
CDS-3UTR TCA 90 bp GTTAGTGCCTATGTAGAATATAATACACAAAACCATTTAGCAGGTGCATGCAAGGAAACGAAGAGTGGTTaGCCACACGCGGCCTTACCA +
Preference number: 4 (lower is better)
Translates to: VSAYVEYNTQNHLAGACKETKSG*PHAALP
Trigger: TGGTAAGGCCGCGTGTGGTCAACCACTCTTCGTTTC...CTTGCATGCACCTGCTAAATGGTTTTGTGTATTATATTCTACATAGGCACTAAC
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000031709.7
CDS-3UTR GCA 90 bp ACAAATGTTGACCGCACCTTCACAGGCACGCACACACTTCTGTGTGTATATAGAGGAACTTCTGTTAAATaGTTTACCGCACTGGTTGCA +
Preference number: 4 (lower is better)
Translates to: TNVDRTFTGTHTLLCVYRGTSVK*FTALVA
Trigger: TGCAACCAGTGCGGTAAAGCATTTAACAGAAGTTCC...TCTATATACACACAGAAGTGTGTGCGTGCCTGTGAAGGTGCGGTCAACATTTGT
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000031709.7
CDS-3UTR TCA 90 bp GTTAGTGCCTATGTAGAATATAATACACAAAACCATTTAGCAGGTGCATGCAAGTGCGGACGTGCTTCTTaGGGTCAAAGTTCCTACAAA +
Preference number: 4 (lower is better)
Translates to: VSAYVEYNTQNHLAGACKCGRAS*GQSSYK
Trigger: TTTGTAGGAACTTTGACCTCAAGAAGCACGTCCGCA...CTTGCATGCACCTGCTAAATGGTTTTGTGTATTATATTCTACATAGGCACTAAC
41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000031709.7
CDS-3UTR GCA 90 bp GCCTATGTAGAATATAATACACAAAACCATTTAGCAGGTGCATGCAAGAGGCGGTTTGATGAAATCCTTTaGCGCAGAATTCACACACGA +
Preference number: 4 (lower is better)
Translates to: AYVEYNTQNHLAGACKRRFDEIL*RRIHTR
Trigger: TCGTGTGTGAATTCTGCGGCAAAGGATTTCATCAAA...CCGCCTCTTGCATGCACCTGCTAAATGGTTTTGTGTATTATATTCTACATAGGC
41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000031709.7
CDS-3UTR GCA 90 bp GTTAGTGCCTATGTAGAATATAATACACAAAACCATTTAGCAGGTGCATGCAAGTGTAGCTTGCGGACGTaGTTCTTGAGGTCAAAGTTC +
Preference number: 4 (lower is better)
Translates to: VSAYVEYNTQNHLAGACKCSLRT*FLRSKF
Trigger: GAACTTTGACCTCAAGAAGCACGTCCGCAAGCTACA...CTTGCATGCACCTGCTAAATGGTTTTGTGTATTATATTCTACATAGGCACTAAC
41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000031709.7
3UTR CAA 72 bp GGGGAAGGAGAAAATTATAAACGATCAGCAGGCATTTaGAGACGGCAGAAACGACACAATGGAAATATTTAC +
Preference number: 4 (lower is better)
Translates to: GEGENYKRSAGI*RRQKRHNGNIY
Trigger: GTAAATATTTCCATTGTGTCGTTTCTGCCGTCTCAAAATGCCTGCTGATCGTTTATAATTTTCTCCTTCCCC
40% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000031709.7
CDS CCA 90 bp AAGCCCGGATGGCAGAGGCCCGGGAGGCGGCAATGTAGGCTGCAGTaGCGGCAGAGGCGCAGGCGGCGGCTGTTGCAGCTGGGGCGGCGG +
Preference number: 5 (lower is better)
Translates to: KPGWQRPGRRQCRLQ*RQRRRRRLLQLGRR
Trigger: CCGCCGCCCCAGCTGCAACAGCCGCCGCCTGCGCCTCTGCCGCCACTGCAGCCTACATTGCCGCCTCCCGGGCCTCTGCCATCCGGGCTT
74% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000031709.7
CDS CCA 90 bp CCTCCAAACTCGCCTTGCGGGGCTCTGAGCCATTCACTCCCGCTTTaGAGTTCGTGTCGTACGCCACGGGGACGAAAGGGATCATGCAGG +
Preference number: 5 (lower is better)
Translates to: PPNSPCGALSHSLPL*SSCRTPRGRKGSCR
Trigger: CCTGCATGATCCCTTTCGTCCCCGTGGCGTACGACACGAACTCCAAAGCGGGAGTGAATGGCTCAGAGCCCCGCAAGGCGAGTTTGGAGG
61% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000031709.7
CDS GCA 90 bp GGAGTGCGGGTCAGCCCCAGGCTGCTGTCGTGTAGCTTGCGGACGTaGTTCTTGAGGTCAAAGTTCCTACAAAAGCCCTTGCCACACGTG +
Preference number: 5 (lower is better)
Translates to: GVRVSPRLLSCSLRT*FLRSKFLQKPLPHV
Trigger: CACGTGTGGCAAGGGCTTTTGTAGGAACTTTGACCTCAAGAAGCACGTCCGCAAGCTACACGACAGCAGCCTGGGGCTGACCCGCACTCC
59% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000031709.7
CDS-3UTR CAA 90 bp GGGACCCAACATGCCCCAGGTTTTGCAGGCGAGCTTGGACCAAGAAGTCCGCTCTCGGCTAAATACGTTTaGGGCTGTGGGTGCAAAGGG +
Preference number: 5 (lower is better)
Translates to: GTQHAPGFAGELGPRSPLSAKYV*GCGCKG
Trigger: CCCTTTGCACCCACAGCCCAAAACGTATTTAGCCGA...GAGCGGACTTCTTGGTCCAAGCTCGCCTGCAAAACCTGGGGCATGTTGGGTCCC
58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000031709.7
CDS TCA 90 bp GGTTCAGGTAGCACAGGGCACCCATGGCGTGAAACGAAGAGTGGTTaGCCACACGCGGCCTTACCAGCTTGTACTGCTGTAGTGGCAATG +
Preference number: 5 (lower is better)
Translates to: GSGSTGHPWRETKSG*PHAALPACTAVVAM
Trigger: CATTGCCACTACAGCAGTACAAGCTGGTAAGGCCGCGTGTGGTCAACCACTCTTCGTTTCACGCCATGGGTGCCCTGTGCTACCTGAACC
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000031709.7
CDS TCA 90 bp TCCTTTCGGCTAAATACGTTTTGGGCTGTGGGTGCAAAGGGGAACTaGGAAAGTAGGAGGCCACCGGGTGGATGTTCACGCTCGCAGCCG +
Preference number: 5 (lower is better)
Translates to: SFRLNTFWAVGAKGN*ESRRPPGGCSRSQP
Trigger: CGGCTGCGAGCGTGAACATCCACCCGGTGGCCTCCTACTTTCTCAGTTCCCCTTTGCACCCACAGCCCAAAACGTATTTAGCCGAAAGGA
57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000031709.7
CDS-3UTR CAA 90 bp GGGACCCAACATGCCCCAGGTTTTGCAGGCGAGCTTGGACCAAGAAGTCCGCTCACCTGGTGGAAAGCCTaGTTGCAGATATTGCACTTG +
Preference number: 5 (lower is better)
Translates to: GTQHAPGFAGELGPRSPLTWWKA*LQILHL
Trigger: CAAGTGCAATATCTGCAACAAGGCTTTCCACCAGGT...GAGCGGACTTCTTGGTCCAAGCTCGCCTGCAAAACCTGGGGCATGTTGGGTCCC
56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000031709.7
CDS-3UTR CAA 90 bp GGGACCCAACATGCCCCAGGTTTTGCAGGCGAGCTTGGACCAAGAAGTCCGCTCTCACAAGTGAAAACTTaGGGCTTGGCATTTGGAGAG +
Preference number: 5 (lower is better)
Translates to: GTQHAPGFAGELGPRSPLSQVKT*GLAFGE
Trigger: CTCTCCAAATGCCAAGCCCAAAGTTTTCACTTGTGA...GAGCGGACTTCTTGGTCCAAGCTCGCCTGCAAAACCTGGGGCATGTTGGGTCCC
54% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 1 transcripts:
ENSMUST00000031709.7
CDS-3UTR CAA 90 bp GTGCTCACAAATGTTGACCGCACCTTCACAGGCACGCACACACTTCTGTGTGTAGTGAAAACTTTGGGCTaGGCATTTGGAGAGCCGCGG +
Preference number: 5 (lower is better)
Translates to: VLTNVDRTFTGTHTLLCVVKTLG*AFGEPR
Trigger: CCGCGGCTCTCCAAATGCCAAGCCCAAAGTTTTCAC...TACACACAGAAGTGTGTGCGTGCCTGTGAAGGTGCGGTCAACATTTGTGAGCAC
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000031709.7
CDS TCA 90 bp CGCTTTCTTTCATGTAATGCTGCAGCTGAGCCTGGGACAGGTCTTTaGAAGCTACTCCCGAAGGGAGTTTCTCCACTGCCGGTACAACCA +
Preference number: 5 (lower is better)
Translates to: RFLSCNAAAEPGTGL*KLLPKGVSPLPVQP
Trigger: TGGTTGTACCGGCAGTGGAGAAACTCCCTTCGGGAGTAGCTTTCAAAGACCTGTCCCAGGCTCAGCTGCAGCATTACATGAAAGAAAGCG
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000031709.7
CDS-3UTR CAA 90 bp ATGTATGTGCTCACAAATGTTGACCGCACCTTCACAGGCACGCACACACTTCTGCGCGGCCTTACCAGCTaGTACTGCTGTAGTGGCAAT +
Preference number: 5 (lower is better)
Translates to: MYVLTNVDRTFTGTHTLLRGLTS*YCCSGN
Trigger: ATTGCCACTACAGCAGTACAAGCTGGTAAGGCCGCG...CAGAAGTGTGTGCGTGCCTGTGAAGGTGCGGTCAACATTTGTGAGCACATACAT
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000031709.7
CDS-3UTR CAA 90 bp CAAATGTTGACCGCACCTTCACAGGCACGCACACACTTCTGTGTGTATATAGAAGCCTGGGACAGGTCTTaGAAAGCTACTCCCGAAGGG +
Preference number: 5 (lower is better)
Translates to: QMLTAPSQARTHFCVYIEAWDRS*KATPEG
Trigger: CCCTTCGGGAGTAGCTTTCAAAGACCTGTCCCAGGC...TTCTATATACACACAGAAGTGTGTGCGTGCCTGTGAAGGTGCGGTCAACATTTG
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000031709.7
CDS-3UTR CAA 90 bp GTTAGTGCCTATGTAGAATATAATACACAAAACCATTTAGCAGGTGCATGCAAGTGCTTGGGGTCCCCTTaGGGCACGGCTCCCTGCAGG +
Preference number: 5 (lower is better)
Translates to: VSAYVEYNTQNHLAGACKCLGSP*GTAPCR
Trigger: CCTGCAGGGAGCCGTGCCCAAAGGGGACCCCAAGCA...CTTGCATGCACCTGCTAAATGGTTTTGTGTATTATATTCTACATAGGCACTAAC
50% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 1 transcripts:
ENSMUST00000031709.7
CDS-3UTR CAA 90 bp GCCTATGTAGAATATAATACACAAAACCATTTAGCAGGTGCATGCAAGAGGCGGAGATGCAGAGAGTGCTaGGGGTCCCCTTTGGGCACG +
Preference number: 5 (lower is better)
Translates to: AYVEYNTQNHLAGACKRRRCREC*GSPLGT
Trigger: CGTGCCCAAAGGGGACCCCAAGCACTCTCTGCATCT...CCGCCTCTTGCATGCACCTGCTAAATGGTTTTGTGTATTATATTCTACATAGGC
50% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 1 transcripts:
ENSMUST00000031709.7
CDS-3UTR CAA 90 bp GCCTATGTAGAATATAATACACAAAACCATTTAGCAGGTGCATGCAAGAGGCGGTTCCTACAAAAGCCCTaGCCACACGTGGGGCAGGTG +
Preference number: 5 (lower is better)
Translates to: AYVEYNTQNHLAGACKRRFLQKP*PHVGQV
Trigger: CACCTGCCCCACGTGTGGCAAGGGCTTTTGTAGGAA...CCGCCTCTTGCATGCACCTGCTAAATGGTTTTGTGTATTATATTCTACATAGGC
49% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 1 transcripts:
ENSMUST00000031709.7
CDS-3UTR CAA 90 bp GCCTATGTAGAATATAATACACAAAACCATTTAGCAGGTGCATGCAAGAGGCGGCAGGGGATCGACGAGTaGAGATGCAGAGAGTGCTTG +
Preference number: 5 (lower is better)
Translates to: AYVEYNTQNHLAGACKRRQGIDE*RCRECL
Trigger: CAAGCACTCTCTGCATCTCAACTCGTCGATCCCCTG...CCGCCTCTTGCATGCACCTGCTAAATGGTTTTGTGTATTATATTCTACATAGGC
48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000031709.7
CDS-3UTR CAA 90 bp ATGTATGTGCTCACAAATGTTGACCGCACCTTCACAGGCACGCACACACTTCTGTGGTGGAAAGCCTTGTaGCAGATATTGCACTTGAAC +
Preference number: 5 (lower is better)
Translates to: MYVLTNVDRTFTGTHTLLWWKAL*QILHLN
Trigger: GTTCAAGTGCAATATCTGCAACAAGGCTTTCCACCA...CAGAAGTGTGTGCGTGCCTGTGAAGGTGCGGTCAACATTTGTGAGCACATACAT
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000031709.7
CDS-3UTR CAA 90 bp GTTAGTGCCTATGTAGAATATAATACACAAAACCATTTAGCAGGTGCATGCAAGGATGTGCTCATCACGTaGCCCCGAGCTGGAGCAGTC +
Preference number: 5 (lower is better)
Translates to: VSAYVEYNTQNHLAGACKDVLIT*PRAGAV
Trigger: GACTGCTCCAGCTCGGGGCAACGTGATGAGCACATC...CTTGCATGCACCTGCTAAATGGTTTTGTGTATTATATTCTACATAGGCACTAAC
47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000031709.7
CDS-3UTR CAA 90 bp GTTAGTGCCTATGTAGAATATAATACACAAAACCATTTAGCAGGTGCATGCAAGAGACTTAGCGCGCAGTaGAGCAGGTCGCTGCAGCTG +
Preference number: 5 (lower is better)
Translates to: VSAYVEYNTQNHLAGACKRLSAQ*SRSLQL
Trigger: CAGCTGCAGCGACCTGCTCAACTGCGCGCTAAGTCT...CTTGCATGCACCTGCTAAATGGTTTTGTGTATTATATTCTACATAGGCACTAAC
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000031709.7
CDS-3UTR CAA 90 bp GTGCTCACAAATGTTGACCGCACCTTCACAGGCACGCACACACTTCTGTGTGTATTTTTCCGACAAAAGTaGGGCGCTTTCTTTCATGTA +
Preference number: 5 (lower is better)
Translates to: VLTNVDRTFTGTHTLLCVFFRQK*GAFFHV
Trigger: TACATGAAAGAAAGCGCCCAACTTTTGTCGGAAAAA...TACACACAGAAGTGTGTGCGTGCCTGTGAAGGTGCGGTCAACATTTGTGAGCAC
47% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000031709.7
CDS-3UTR CAA 90 bp TGTATTATGTATGTGCTCACAAATGTTGACCGCACCTTCACAGGCACGCACACATTGCGGACGTGCTTCTaGAGGTCAAAGTTCCTACAA +
Preference number: 5 (lower is better)
Translates to: CIMYVLTNVDRTFTGTHTLRTCF*RSKFLQ
Trigger: TTGTAGGAACTTTGACCTCAAGAAGCACGTCCGCAA...TGTGTGCGTGCCTGTGAAGGTGCGGTCAACATTTGTGAGCACATACATAATACA
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000031709.7
CDS-3UTR CAA 90 bp GTTAGTGCCTATGTAGAATATAATACACAAAACCATTTAGCAGGTGCATGCAAGTTGCAGATATTGCACTaGAACTGTTTCTCCCCGCTG +
Preference number: 5 (lower is better)
Translates to: VSAYVEYNTQNHLAGACKLQILH*NCFSPL
Trigger: CAGCGGGGAGAAACAGTTCAAGTGCAATATCTGCAA...CTTGCATGCACCTGCTAAATGGTTTTGTGTATTATATTCTACATAGGCACTAAC
41% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000031709.7
CDS-3UTR CAA 90 bp GCCTATGTAGAATATAATACACAAAACCATTTAGCAGGTGCATGCAAGAGGCGGTTTGTAATTCCCTTTTaGATGAAATCCTTTGCCGCA +
Preference number: 5 (lower is better)
Translates to: AYVEYNTQNHLAGACKRRFVIPF*MKSFAA
Trigger: TGCGGCAAAGGATTTCATCAAAAAGGGAATTACAAA...CCGCCTCTTGCATGCACCTGCTAAATGGTTTTGTGTATTATATTCTACATAGGC
40% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000031709.7
CDS-3UTR CAA 90 bp GTTAGTGCCTATGTAGAATATAATACACAAAACCATTTAGCAGGTGCATGCAAGGCCTTGTTGCAGATATaGCACTTGAACTGTTTCTCC +
Preference number: 5 (lower is better)
Translates to: VSAYVEYNTQNHLAGACKALLQI*HLNCFS
Trigger: GGAGAAACAGTTCAAGTGCAATATCTGCAACAAGGC...CTTGCATGCACCTGCTAAATGGTTTTGTGTATTATATTCTACATAGGCACTAAC
40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000031709.7
CDS GCA 72 bp CCGGATGGCAGAGGCCCGGGAGGCGGCAATGTAGGCTaGAGTGGCGGCAGAGGCGCAGGCGGCGGCTGTTGC +
Preference number: 6 (lower is better)
Translates to: PDGRGPGGGNVG*SGGRGAGGGCC
Trigger: GCAACAGCCGCCGCCTGCGCCTCTGCCGCCACTGCAGCCTACATTGCCGCCTCCCGGGCCTCTGCCATCCGG
74% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000031709.7
CDS CCA 72 bp AGTGGCGGCAGAGGCGCAGGCGGCGGCTGTTGCAGCTaGGGCGGCGGATCGCTGCTTGGCTCCCCAGTAGGA +
Preference number: 6 (lower is better)
Translates to: SGGRGAGGGCCS*GGGSLLGSPVG
Trigger: TCCTACTGGGGAGCCAAGCAGCGATCCGCCGCCCCAGCTGCAACAGCCGCCGCCTGCGCCTCTGCCGCCACT
72% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000031709.7
CDS CAA 90 bp GGCAATGCGTCGCGGGCCAGGTCGCCCTTAAGACTTAGCGCGCAGTaGAGCAGGTCGCTGCAGCTGAACGCCGGCGCAGAGGGCGCCACC +
Preference number: 6 (lower is better)
Translates to: GNASRARSPLRLSAQ*SRSLQLNAGAEGAT
Trigger: GGTGGCGCCCTCTGCGCCGGCGTTCAGCTGCAGCGACCTGCTCAACTGCGCGCTAAGTCTTAAGGGCGACCTGGCCCGCGACGCATTGCC
69% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000031709.7
CDS GCA 72 bp CCACCGCGGGCGGCGCCGGAACCTCCAAACTCGCCTTaGGGGGCTCTGAGCCATTCACTCCCGCTTTGGAGT +
Preference number: 6 (lower is better)
Translates to: PPRAAPEPPNSP*GALSHSLPLWS
Trigger: ACTCCAAAGCGGGAGTGAATGGCTCAGAGCCCCGCAAGGCGAGTTTGGAGGTTCCGGCGCCGCCCGCGGTGG
68% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000031709.7
CDS CAA 72 bp TCGCGGGCCAGGTCGCCCTTAAGACTTAGCGCGCAGTaGAGCAGGTCGCTGCAGCTGAACGCCGGCGCAGAG +
Preference number: 6 (lower is better)
Translates to: SRARSPLRLSAQ*SRSLQLNAGAE
Trigger: CTCTGCGCCGGCGTTCAGCTGCAGCGACCTGCTCAACTGCGCGCTAAGTCTTAAGGGCGACCTGGCCCGCGA
67% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000031709.7
CDS GCA 72 bp GAGTGGTTGACCACACGCGGCCTTACCAGCTTGTACTaGTGTAGTGGCAATGCGTCGCGGGCCAGGTCGCCC +
Preference number: 6 (lower is better)
Translates to: EWLTTRGLTSLY*CSGNASRARSP
Trigger: GGGCGACCTGGCCCGCGACGCATTGCCACTACAGCAGTACAAGCTGGTAAGGCCGCGTGTGGTCAACCACTC
64% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000031709.7
CDS CAA 90 bp ACCTCCAAACTCGCCTTGCGGGGCTCTGAGCCATTCACTCCCGCTTaGGAGTTCGTGTCGTACGCCACGGGGACGAAAGGGATCATGCAG +
Preference number: 6 (lower is better)
Translates to: TSKLALRGSEPFTPA*EFVSYATGTKGIMQ
Trigger: CTGCATGATCCCTTTCGTCCCCGTGGCGTACGACACGAACTCCAAAGCGGGAGTGAATGGCTCAGAGCCCCGCAAGGCGAGTTTGGAGGT
60% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000031709.7
CDS CAA 72 bp AACGAAGAGTGGTTGACCACACGCGGCCTTACCAGCTaGTACTGCTGTAGTGGCAATGCGTCGCGGGCCAGG +
Preference number: 6 (lower is better)
Translates to: NEEWLTTRGLTS*YCCSGNASRAR
Trigger: CCTGGCCCGCGACGCATTGCCACTACAGCAGTACAAGCTGGTAAGGCCGCGTGTGGTCAACCACTCTTCGTT
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000031709.7
CDS CAA 72 bp GGAGTGCGGGTCAGCCCCAGGCTGCTGTCGTGTAGCTaGCGGACGTGCTTCTTGAGGTCAAAGTTCCTACAA +
Preference number: 6 (lower is better)
Translates to: GVRVSPRLLSCS*RTCFLRSKFLQ
Trigger: TTGTAGGAACTTTGACCTCAAGAAGCACGTCCGCAAGCTACACGACAGCAGCCTGGGGCTGACCCGCACTCC
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000031709.7
CDS TCA 72 bp AGCACAGGGCACCCATGGCGTGAAACGAAGAGTGGTTaGCCACACGCGGCCTTACCAGCTTGTACTGCTGTA +
Preference number: 6 (lower is better)
Translates to: STGHPWRETKSG*PHAALPACTAV
Trigger: TACAGCAGTACAAGCTGGTAAGGCCGCGTGTGGTCAACCACTCTTCGTTTCACGCCATGGGTGCCCTGTGCT
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000031709.7
CDS TCA 72 bp CCAGGCTGCTGTCGTGTAGCTTGCGGACGTGCTTCTTaGGGTCAAAGTTCCTACAAAAGCCCTTGCCACACG +
Preference number: 6 (lower is better)
Translates to: PGCCRVACGRAS*GQSSYKSPCHT
Trigger: CGTGTGGCAAGGGCTTTTGTAGGAACTTTGACCTCAAGAAGCACGTCCGCAAGCTACACGACAGCAGCCTGG
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000031709.7
CDS GCA 72 bp GTCAGCCCCAGGCTGCTGTCGTGTAGCTTGCGGACGTaGTTCTTGAGGTCAAAGTTCCTACAAAAGCCCTTG +
Preference number: 6 (lower is better)
Translates to: VSPRLLSCSLRT*FLRSKFLQKPL
Trigger: CAAGGGCTTTTGTAGGAACTTTGACCTCAAGAAGCACGTCCGCAAGCTACACGACAGCAGCCTGGGGCTGAC
56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000031709.7
CDS CAA 72 bp CCCAGGCTGCTGTCGTGTAGCTTGCGGACGTGCTTCTaGAGGTCAAAGTTCCTACAAAAGCCCTTGCCACAC +
Preference number: 6 (lower is better)
Translates to: PRLLSCSLRTCF*RSKFLQKPLPH
Trigger: GTGTGGCAAGGGCTTTTGTAGGAACTTTGACCTCAAGAAGCACGTCCGCAAGCTACACGACAGCAGCCTGGG
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000031709.7
CDS TCA 72 bp CTAAATACGTTTTGGGCTGTGGGTGCAAAGGGGAACTaGGAAAGTAGGAGGCCACCGGGTGGATGTTCACGC +
Preference number: 6 (lower is better)
Translates to: LNTFWAVGAKGN*ESRRPPGGCSR
Trigger: GCGTGAACATCCACCCGGTGGCCTCCTACTTTCTCAGTTCCCCTTTGCACCCACAGCCCAAAACGTATTTAG
54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000031709.7
CDS TCA 72 bp TCATGTAATGCTGCAGCTGAGCCTGGGACAGGTCTTTaGAAGCTACTCCCGAAGGGAGTTTCTCCACTGCCG +
Preference number: 6 (lower is better)
Translates to: SCNAAAEPGTGL*KLLPKGVSPLP
Trigger: CGGCAGTGGAGAAACTCCCTTCGGGAGTAGCTTTCAAAGACCTGTCCCAGGCTCAGCTGCAGCATTACATGA
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000031709.7
CDS CAA 90 bp ATTCGTTCGATGGAGAAAGCCAAGGGTTTAGATGTGCTCATCACGTaGCCCCGAGCTGGAGCAGTCGCTAGCATTTTGGTGGTCGCGTTG +
Preference number: 6 (lower is better)
Translates to: IRSMEKAKGLDVLIT*PRAGAVASILVVAL
Trigger: CAACGCGACCACCAAAATGCTAGCGACTGCTCCAGCTCGGGGCAACGTGATGAGCACATCTAAACCCTTGGCTTTCTCCATCGAACGAAT
53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000031709.7
CDS CAA 72 bp ATGGAGAAAGCCAAGGGTTTAGATGTGCTCATCACGTaGCCCCGAGCTGGAGCAGTCGCTAGCATTTTGGTG +
Preference number: 6 (lower is better)
Translates to: MEKAKGLDVLIT*PRAGAVASILV
Trigger: CACCAAAATGCTAGCGACTGCTCCAGCTCGGGGCAACGTGATGAGCACATCTAAACCCTTGGCTTTCTCCAT
53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000031709.7
CDS CCA 72 bp GCAGACTTCACAAGTGAAAACTTTGGGCTTGGCATTTaGAGAGCCGCGGCTGAAATCCGAGGTTTTGAAAGC +
Preference number: 6 (lower is better)
Translates to: ADFTSENFGLGI*RAAAEIRGFES
Trigger: GCTTTCAAAACCTCGGATTTCAGCCGCGGCTCTCCAAATGCCAAGCCCAAAGTTTTCACTTGTGAAGTCTGC
50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000031709.7
CDS GCA 72 bp TGTGATTTTTGTAATTCCCTTTTTGATGAAATCCTTTaGCGCAGAATTCACACACGAATGGTTTGTAGCCCG +
Preference number: 6 (lower is better)
Translates to: CDFCNSLFDEIL*RRIHTRMVCSP
Trigger: CGGGCTACAAACCATTCGTGTGTGAATTCTGCGGCAAAGGATTTCATCAAAAAGGGAATTACAAAAATCACA
40% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 1 transcripts:
ENSMUST00000031709.7