Pregenerated sensors for FEV (Mus musculus)
Ensembl gene IDs: ENSMUSG00000055197Ensembl transcript IDs: ENSMUST00000068631.4, ENSMUST00000159232.2
Found 39 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR CCA 90 bp | CTGATGTTCAAGGAAGACCTCGGGGGTTTCCCATCCTTTCTTCCCTaGGCTGGGCGCGGCTGCTGCAATGAAATCTGTGTTAAAGGAACG | + |
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Preference number: 1 (lower is better) Translates to: LMFKEDLGGFPSFLP*AGRGCCNEICVKGT Trigger: CGTTCCTTTAACACAGATTTCATTGCAGCAGCCGCGCCCAGCCCAGGGAAGAAAGGATGGGAAACCCCCGAGGTCTTCCTTGAACATCAG 54% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000068631.4 |
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| 3UTR TCA 90 bp | TCCTTGGGCCAGAGTGTGATATGGGAGAAAGGGAAGCCAGAGTGTTaGTATAGGGATGGGGAACGGCAGAGATGTTTATCGAGGCTTCTC | + |
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Preference number: 1 (lower is better) Translates to: SLGQSVIWEKGKPEC*YRDGERQRCLSRLL Trigger: GAGAAGCCTCGATAAACATCTCTGCCGTTCCCCATCCCTATATCAACACTCTGGCTTCCCTTTCTCCCATATCACACTCTGGCCCAAGGA 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000068631.4 |
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| 3UTR CCA 90 bp | AGACTTGGAAGAGAAAAATTAAAGTGGGAGCCCATGCACCCTTCCTaGGGCGAAGATAACGGGGCCTGGAAGCCTGATGTTCAAGGAAGA | + |
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Preference number: 1 (lower is better) Translates to: RLGREKLKWEPMHPS*GEDNGAWKPDVQGR Trigger: TCTTCCTTGAACATCAGGCTTCCAGGCCCCGTTATCTTCGCCCCAGGAAGGGTGCATGGGCTCCCACTTTAATTTTTCTCTTCCAAGTCT 51% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000068631.4 |
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| 3UTR-3UTR GCA 90 bp | CTGGAGACTTGGAAGAGAAAAATTAAAGTGGGAGCCCATGCACCCTTCCTGGGGTGGGCTGGGCGCGGCTaGTGCAATGAAATCTGTGTT | + |
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Preference number: 2 (lower is better) Translates to: LETWKRKIKVGAHAPFLGWAGRG*CNEICV Trigger: AACACAGATTTCATTGCAGCAGCCGCGCCCAGCCCA...CCCCAGGAAGGGTGCATGGGCTCCCACTTTAATTTTTCTCTTCCAAGTCTCCAG 53% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000068631.4 |
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| 3UTR TCA 72 bp | GGAACGTCGGGGAAAGCTTCGGGGCTCCTCCGAGGATaGGGATGGGATTGGTCACTGGGCCATGTGAGAGAG | + |
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Preference number: 3 (lower is better) Translates to: GTSGKASGLLRG*GWDWSLGHVRE Trigger: CTCTCTCACATGGCCCAGTGACCAATCCCATCCTCATCCTCGGAGGAGCCCCGAAGCTTTCCCCGACGTTCC 61% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000068631.4 |
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| 3UTR GCA 72 bp | GGTTTCCCATCCTTTCTTCCCTGGGCTGGGCGCGGCTaGTGCAATGAAATCTGTGTTAAAGGAACGTCGGGG | + |
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Preference number: 3 (lower is better) Translates to: GFPSFLPWAGRG*CNEICVKGTSG Trigger: CCCCGACGTTCCTTTAACACAGATTTCATTGCAGCAGCCGCGCCCAGCCCAGGGAAGAAAGGATGGGAAACC 57% GC, longest homopolymer 4 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000068631.4 |
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| 3UTR CCA 72 bp | AAGGAAGACCTCGGGGGTTTCCCATCCTTTCTTCCCTaGGCTGGGCGCGGCTGCTGCAATGAAATCTGTGTT | + |
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Preference number: 3 (lower is better) Translates to: KEDLGGFPSFLP*AGRGCCNEICV Trigger: AACACAGATTTCATTGCAGCAGCCGCGCCCAGCCCAGGGAAGAAAGGATGGGAAACCCCCGAGGTCTTCCTT 57% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000068631.4 |
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| 3UTR CCA 72 bp | AGAGAAAAATTAAAGTGGGAGCCCATGCACCCTTCCTaGGGCGAAGATAACGGGGCCTGGAAGCCTGATGTT | + |
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Preference number: 3 (lower is better) Translates to: REKLKWEPMHPS*GEDNGAWKPDV Trigger: AACATCAGGCTTCCAGGCCCCGTTATCTTCGCCCCAGGAAGGGTGCATGGGCTCCCACTTTAATTTTTCTCT 53% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000068631.4 |
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| 3UTR CCA 72 bp | GGAGTGCGAGAAGCCTTGAGGTACTACCTTTTGGAGTaGGTTGTGGGAGAGAGTCAGAAAATGAGGACCAAG | + |
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Preference number: 3 (lower is better) Translates to: GVREALRYYLLE*VVGESQKMRTK Trigger: CTTGGTCCTCATTTTCTGACTCTCTCCCACAACCCACTCCAAAAGGTAGTACCTCAAGGCTTCTCGCACTCC 51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000068631.4 |
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| 3UTR TCA 72 bp | GGGATATATACAGGCTGGGGTCCTTGGGCCAGAGTGTaGTATGGGAGAAAGGGAAGCCAGAGTGTTGATATA | + |
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Preference number: 3 (lower is better) Translates to: GIYTGWGPWARV*YGRKGSQSVDI Trigger: TATATCAACACTCTGGCTTCCCTTTCTCCCATATCACACTCTGGCCCAAGGACCCCAGCCTGTATATATCCC 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000068631.4 |
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| 3UTR CCA 72 bp | TCCAGAATCTGGAGACTTGGAAGAGAAAAATTAAAGTaGGAGCCCATGCACCCTTCCTGGGGCGAAGATAAC | + |
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Preference number: 3 (lower is better) Translates to: SRIWRLGREKLK*EPMHPSWGEDN Trigger: GTTATCTTCGCCCCAGGAAGGGTGCATGGGCTCCCACTTTAATTTTTCTCTTCCAAGTCTCCAGATTCTGGA 49% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000068631.4 |
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| CDS-3UTR GCA 90 bp | GGATTGGTCACTGGGCCATGTGAGAGAGGCCCCGCTGTACCCGGCCGTCCCCGTGCAGCGGCGTGGGCGTaGGCGGGTGGTGGCTGGCAA | + |
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Preference number: 4 (lower is better) Translates to: GLVTGPCERGPAVPGRPRAAAWA*AGGGWQ Trigger: TTGCCAGCCACCACCCGCGCACGCCCACGCCGCTGC...ACGGGGACGGCCGGGTACAGCGGGGCCTCTCTCACATGGCCCAGTGACCAATCC 71% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000068631.4 ENSMUST00000159232.2 |
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| CDS-3UTR GCA 90 bp | TGGGATTGGTCACTGGGCCATGTGAGAGAGGCCCCGCTGTACCCGGCCGTCCCCCGAAGCTGCCGCCACTaGGCCGAAGGGCCCGGGAGG | + |
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Preference number: 4 (lower is better) Translates to: WDWSLGHVREAPLYPAVPRSCRH*AEGPGR Trigger: CCTCCCGGGCCCTTCGGCGCAGTGGCGGCAGCTTCG...GGGGACGGCCGGGTACAGCGGGGCCTCTCTCACATGGCCCAGTGACCAATCCCA 71% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENSMUST00000068631.4 ENSMUST00000159232.2 |
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| CDS-3UTR CCA 90 bp | ATGGGATTGGTCACTGGGCCATGTGAGAGAGGCCCCGCTGTACCCGGCCGTCCCGTGGGCGTGCGCGGGTaGTGGCTGGCAAGCCTGCGC | + |
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Preference number: 4 (lower is better) Translates to: MGLVTGPCERGPAVPGRPVGVRG*WLASLR Trigger: GCGCAGGCTTGCCAGCCACCACCCGCGCACGCCCAC...GGGACGGCCGGGTACAGCGGGGCCTCTCTCACATGGCCCAGTGACCAATCCCAT 70% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000068631.4 ENSMUST00000159232.2 |
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| CDS-3UTR CCA 90 bp | AGGATGGGATTGGTCACTGGGCCATGTGAGAGAGGCCCCGCTGTACCCGGCCGTTGCGCGGGTGGTGGCTaGCAAGCCTGCGCCAGGCCC | + |
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Preference number: 4 (lower is better) Translates to: RMGLVTGPCERGPAVPGRCAGGG*QACARP Trigger: GGGCCTGGCGCAGGCTTGCCAGCCACCACCCGCGCA...ACGGCCGGGTACAGCGGGGCCTCTCTCACATGGCCCAGTGACCAATCCCATCCT 69% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000068631.4 ENSMUST00000159232.2 |
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| CDS-3UTR CCA 90 bp | ATGAGGATGGGATTGGTCACTGGGCCATGTGAGAGAGGCCCCGCTGTACCCGGCGGCGTGCGCGGGTGGTaGCTGGCAAGCCTGCGCCAG | + |
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Preference number: 4 (lower is better) Translates to: MRMGLVTGPCERGPAVPGGVRGW*LASLRQ Trigger: CTGGCGCAGGCTTGCCAGCCACCACCCGCGCACGCC...GCCGGGTACAGCGGGGCCTCTCTCACATGGCCCAGTGACCAATCCCATCCTCAT 68% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000068631.4 ENSMUST00000159232.2 |
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| CDS-3UTR CCA 90 bp | ATGAGGATGGGATTGGTCACTGGGCCATGTGAGAGAGGCCCCGCTGTACCCGGCGCTGCAAGCCCGGGGTaGGGTAGAGCGCGGCGGTGG | + |
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Preference number: 4 (lower is better) Translates to: MRMGLVTGPCERGPAVPGAASPG*GRARRW Trigger: CCACCGCCGCGCTCTACCCCACCCCGGGCTTGCAGC...GCCGGGTACAGCGGGGCCTCTCTCACATGGCCCAGTGACCAATCCCATCCTCAT 68% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000068631.4 ENSMUST00000159232.2 |
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| CDS-3UTR GCA 90 bp | AGGATGAGGATGGGATTGGTCACTGGGCCATGTGAGAGAGGCCCCGCTGTACCCGCAGCGGCGTGGGCGTaGGCGGGTGGTGGCTGGCAA | + |
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Preference number: 4 (lower is better) Translates to: RMRMGLVTGPCERGPAVPAAAWA*AGGGWQ Trigger: TTGCCAGCCACCACCCGCGCACGCCCACGCCGCTGC...GGGTACAGCGGGGCCTCTCTCACATGGCCCAGTGACCAATCCCATCCTCATCCT 67% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000068631.4 ENSMUST00000159232.2 |
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| CDS-3UTR GCA 90 bp | AGGATGAGGATGGGATTGGTCACTGGGCCATGTGAGAGAGGCCCCGCTGTACCCCGAAGCTGCCGCCACTaGGCCGAAGGGCCCGGGAGG | + |
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Preference number: 4 (lower is better) Translates to: RMRMGLVTGPCERGPAVPRSCRH*AEGPGR Trigger: CCTCCCGGGCCCTTCGGCGCAGTGGCGGCAGCTTCG...GGGTACAGCGGGGCCTCTCTCACATGGCCCAGTGACCAATCCCATCCTCATCCT 67% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000068631.4 ENSMUST00000159232.2 |
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| CDS-3UTR GCA 90 bp | AGGATGGGATTGGTCACTGGGCCATGTGAGAGAGGCCCCGCTGTACCCGGCCGTCCCCAAGTGCGAAGCTaGCGCCACTGCGCCGAAGGG | + |
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Preference number: 4 (lower is better) Translates to: RMGLVTGPCERGPAVPGRPQVRS*RHCAEG Trigger: CCCTTCGGCGCAGTGGCGGCAGCTTCGCACTTGGGG...ACGGCCGGGTACAGCGGGGCCTCTCTCACATGGCCCAGTGACCAATCCCATCCT 67% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000068631.4 ENSMUST00000159232.2 |
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| CDS-3UTR CCA 90 bp | CCGAGGATGAGGATGGGATTGGTCACTGGGCCATGTGAGAGAGGCCCCGCTGTATGCGCGGGTGGTGGCTaGCAAGCCTGCGCCAGGCCC | + |
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Preference number: 4 (lower is better) Translates to: PRMRMGLVTGPCERGPAVCAGGG*QACARP Trigger: GGGCCTGGCGCAGGCTTGCCAGCCACCACCCGCGCA...TACAGCGGGGCCTCTCTCACATGGCCCAGTGACCAATCCCATCCTCATCCTCGG 67% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000068631.4 ENSMUST00000159232.2 |
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| CDS-3UTR GCA 90 bp | GGGGTTTCCCATCCTTTCTTCCCTGGGCTGGGCGCGGCTGCTGCAATGAAATCTCGCCCTCCCACGCGATaGAACCGGCGTTCGCGCGAT | + |
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Preference number: 4 (lower is better) Translates to: GVSHPFFPGLGAAAAMKSRPPTR*NRRSRD Trigger: ATCGCGCGAACGCCGGTTGCATCGCGTGGGAGGGCG...AGATTTCATTGCAGCAGCCGCGCCCAGCCCAGGGAAGAAAGGATGGGAAACCCC 63% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000068631.4 |
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| CDS-3UTR CCA 90 bp | GGAAGCCTGATGTTCAAGGAAGACCTCGGGGGTTTCCCATCCTTTCTTCCCTGGGTGGGCGTGCGCGGGTaGTGGCTGGCAAGCCTGCGC | + |
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Preference number: 4 (lower is better) Translates to: GSLMFKEDLGGFPSFLPWVGVRG*WLASLR Trigger: GCGCAGGCTTGCCAGCCACCACCCGCGCACGCCCAC...CCAGGGAAGAAAGGATGGGAAACCCCCGAGGTCTTCCTTGAACATCAGGCTTCC 63% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000068631.4 |
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| 3UTR CAA 72 bp | GAAAGCTTCGGGGCTCCTCCGAGGATGAGGATGGGATaGGTCACTGGGCCATGTGAGAGAGGCCCCGCTGTA | + |
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Preference number: 4 (lower is better) Translates to: ESFGAPPRMRMG*VTGPCERGPAV Trigger: TACAGCGGGGCCTCTCTCACATGGCCCAGTGACCAATCCCATCCTCATCCTCGGAGGAGCCCCGAAGCTTTC 61% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000068631.4 |
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| CDS-3UTR GCA 90 bp | TACAGGCTGGGGTCCTTGGGCCAGAGTGTGATATGGGAGAAAGGGAAGCCAGAGACTGGATCTGCCCGCTaGCTTTCTGTACCGCGGGGC | + |
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Preference number: 4 (lower is better) Translates to: YRLGSLGQSVIWEKGKPETGSAR*LSVPRG Trigger: GCCCCGCGGTACAGAAAGGCAGCGGGCAGATCCAGT...CTCTGGCTTCCCTTTCTCCCATATCACACTCTGGCCCAAGGACCCCAGCCTGTA 60% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000068631.4 |
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| CDS-3UTR GCA 90 bp | TTCTTCCCTGGGCTGGGCGCGGCTGCTGCAATGAAATCTGTGTTAAAGGAACGTCCCCAAGTGCGAAGCTaGCGCCACTGCGCCGAAGGG | + |
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Preference number: 4 (lower is better) Translates to: FFPGLGAAAAMKSVLKERPQVRS*RHCAEG Trigger: CCCTTCGGCGCAGTGGCGGCAGCTTCGCACTTGGGG...ACGTTCCTTTAACACAGATTTCATTGCAGCAGCCGCGCCCAGCCCAGGGAAGAA 60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000068631.4 |
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| CDS-3UTR CCA 90 bp | GGGGTTTCCCATCCTTTCTTCCCTGGGCTGGGCGCGGCTGCTGCAATGAAATCTTTGATCAGCAGGGGCTaGGAGGTGCCGCTCTGTCTC | + |
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Preference number: 4 (lower is better) Translates to: GVSHPFFPGLGAAAAMKSLISRG*EVPLCL Trigger: GAGACAGAGCGGCACCTCCCAGCCCCTGCTGATCAA...AGATTTCATTGCAGCAGCCGCGCCCAGCCCAGGGAAGAAAGGATGGGAAACCCC 60% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000068631.4 |
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| CDS-3UTR CCA 90 bp | AGACTTGGAAGAGAAAAATTAAAGTGGGAGCCCATGCACCCTTCCTGGGGCGAAGGCGTGCGCGGGTGGTaGCTGGCAAGCCTGCGCCAG | + |
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Preference number: 4 (lower is better) Translates to: RLGREKLKWEPMHPSWGEGVRGW*LASLRQ Trigger: CTGGCGCAGGCTTGCCAGCCACCACCCGCGCACGCC...TTCGCCCCAGGAAGGGTGCATGGGCTCCCACTTTAATTTTTCTCTTCCAAGTCT 60% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000068631.4 |
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| CDS-3UTR CCA 90 bp | AGACTTGGAAGAGAAAAATTAAAGTGGGAGCCCATGCACCCTTCCTGGGGCGAAGCTGCAAGCCCGGGGTaGGGTAGAGCGCGGCGGTGG | + |
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Preference number: 4 (lower is better) Translates to: RLGREKLKWEPMHPSWGEAASPG*GRARRW Trigger: CCACCGCCGCGCTCTACCCCACCCCGGGCTTGCAGC...TTCGCCCCAGGAAGGGTGCATGGGCTCCCACTTTAATTTTTCTCTTCCAAGTCT 60% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 1 transcripts: ENSMUST00000068631.4 |
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| CDS-3UTR TCA 90 bp | ATGAGGATGGGATTGGTCACTGGGCCATGTGAGAGAGGCCCCGCTGTACCCGGCAAGCTGCCATCAAGTTaGGTTTGGATAGGCCCGGGA | + |
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Preference number: 4 (lower is better) Translates to: MRMGLVTGPCERGPAVPGKLPSS*VWIGPG Trigger: TCCCGGGCCTATCCAAACTCAACTTGATGGCAGCTT...GCCGGGTACAGCGGGGCCTCTCTCACATGGCCCAGTGACCAATCCCATCCTCAT 59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000068631.4 ENSMUST00000159232.2 |
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| CDS-3UTR GCA 90 bp | GCTGGGCGCGGCTGCTGCAATGAAATCTGTGTTAAAGGAACGTCGGGGAAAGCTGGCGTTCGCGCGATCTaGCAGCAGCTCCAGGAGAAA | + |
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Preference number: 4 (lower is better) Translates to: AGRGCCNEICVKGTSGKAGVRAI*QQLQEK Trigger: TTTCTCCTGGAGCTGCTGGCAGATCGCGCGAACGCC...AGCTTTCCCCGACGTTCCTTTAACACAGATTTCATTGCAGCAGCCGCGCCCAGC 58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000068631.4 |
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| CDS-3UTR TCA 90 bp | AGGATGGGATTGGTCACTGGGCCATGTGAGAGAGGCCCCGCTGTACCCGGCCGTCGTGCACCTTGCTCATaGTGTTTTTGTCGTAGTAGT | + |
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Preference number: 4 (lower is better) Translates to: RMGLVTGPCERGPAVPGRRAPCS*CFCRSS Trigger: ACTACTACGACAAAAACATCATGAGCAAGGTGCACG...ACGGCCGGGTACAGCGGGGCCTCTCTCACATGGCCCAGTGACCAATCCCATCCT 57% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENSMUST00000068631.4 ENSMUST00000159232.2 |
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| CDS-3UTR TCA 90 bp | TTGGGAGCTTTAATGGGGCTGAAAGGGATATATACAGGCTGGGGTCCTTGGGCCAAGCTGCCATCAAGTTaGGTTTGGATAGGCCCGGGA | + |
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Preference number: 4 (lower is better) Translates to: LGALMGLKGIYTGWGPWAKLPSS*VWIGPG Trigger: TCCCGGGCCTATCCAAACTCAACTTGATGGCAGCTT...GGCCCAAGGACCCCAGCCTGTATATATCCCTTTCAGCCCCATTAAAGCTCCCAA 53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000068631.4 |
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| CDS-3UTR CCA 90 bp | GCAAGTGAGAAAAGAAAAAGACACGGGAGTTCCAGAATCTGGAGACTTGGAAGAAGCTTGAACTCGCCGTaGCCGCCCTCCCACGCGATG | + |
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Preference number: 4 (lower is better) Translates to: ASEKRKRHGSSRIWRLGRSLNSP*PPSHAM Trigger: CATCGCGTGGGAGGGCGGCCACGGCGAGTTCAAGCT...TCTTCCAAGTCTCCAGATTCTGGAACTCCCGTGTCTTTTTCTTTTCTCACTTGC 53% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000068631.4 |
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| 3UTR CAA 72 bp | CTCATATCCCGAGGAAATAGGGGAGTGCGAGAAGCCTaGAGGTACTACCTTTTGGAGTGGGTTGTGGGAGAG | + |
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Preference number: 4 (lower is better) Translates to: LISRGNRGVREA*RYYLLEWVVGE Trigger: CTCTCCCACAACCCACTCCAAAAGGTAGTACCTCAAGGCTTCTCGCACTCCCCTATTTCCTCGGGATATGAG 53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000068631.4 |
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| CDS-3UTR CCA 90 bp | TTCCAGAATCTGGAGACTTGGAAGAGAAAAATTAAAGTGGGAGCCCATGCACCCATCTCCGACGGGATCTaGCAGGTACATGTTGATCAG | + |
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Preference number: 4 (lower is better) Translates to: FQNLETWKRKIKVGAHAPISDGI*QVHVDQ Trigger: CTGATCAACATGTACCTGCCAGATCCCGTCGGAGAT...GGGTGCATGGGCTCCCACTTTAATTTTTCTCTTCCAAGTCTCCAGATTCTGGAA 48% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000068631.4 |
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| CDS-3UTR CAA 90 bp | GCTGGGCGCGGCTGCTGCAATGAAATCTGTGTTAAAGGAACGTCGGGGAAAGCTTCCGGGTCGGTGAGCTaGAACTCGCCGTGGCCGCCC | + |
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Preference number: 5 (lower is better) Translates to: AGRGCCNEICVKGTSGKASGSVS*NSPWPP Trigger: GGGCGGCCACGGCGAGTTCAAGCTCACCGACCCGGA...AGCTTTCCCCGACGTTCCTTTAACACAGATTTCATTGCAGCAGCCGCGCCCAGC 62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000068631.4 |
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| CDS-3UTR CAA 90 bp | GGAAGCCTGATGTTCAAGGAAGACCTCGGGGGTTTCCCATCCTTTCTTCCCTGGTCTGGCAGGTACATGTaGATCAGCAGGGGCTGGGAG | + |
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Preference number: 5 (lower is better) Translates to: GSLMFKEDLGGFPSFLPWSGRYM*ISRGWE Trigger: CTCCCAGCCCCTGCTGATCAACATGTACCTGCCAGA...CCAGGGAAGAAAGGATGGGAAACCCCCGAGGTCTTCCTTGAACATCAGGCTTCC 57% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000068631.4 |
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| CDS CAA 72 bp | CCAGCGGGCGCAACGCCCGCCGAAGCTGCCATCAAGTaGAGTTTGGATAGGCCCGGGAAGGGCAGCGGGGCC | + |
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Preference number: 6 (lower is better) Translates to: PAGATPAEAAIK*SLDRPGKGSGA Trigger: GGCCCCGCTGCCCTTCCCGGGCCTATCCAAACTCAACTTGATGGCAGCTTCGGCGGGCGTTGCGCCCGCTGG 69% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000068631.4 ENSMUST00000159232.2 |
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