Pregenerated sensors for FERD3L (Mus musculus)
Ensembl gene IDs: ENSMUSG00000046518Ensembl transcript IDs: ENSMUST00000061035.4
Found 15 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR CCA 90 bp | TCTACTGTTGAAAAGGAGCAAGGAGGAGAGATCACCAGAGGTCCGTaGAGGAGCAGACCAGTTTCCCACCTGCTCCAAGCAAGAAGCTCT | + |
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Preference number: 1 (lower is better) Translates to: STVEKEQGGEITRGP*RSRPVSHLLQARSS Trigger: AGAGCTTCTTGCTTGGAGCAGGTGGGAAACTGGTCTGCTCCTCCACGGACCTCTGGTGATCTCTCCTCCTTGCTCCTTTTCAACAGTAGA 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000061035.4 |
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| 3UTR CCA 72 bp | GAAAAGGAGCAAGGAGGAGAGATCACCAGAGGTCCGTaGAGGAGCAGACCAGTTTCCCACCTGCTCCAAGCA | + |
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Preference number: 3 (lower is better) Translates to: EKEQGGEITRGP*RSRPVSHLLQA Trigger: TGCTTGGAGCAGGTGGGAAACTGGTCTGCTCCTCCACGGACCTCTGGTGATCTCTCCTCCTTGCTCCTTTTC 57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000061035.4 |
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| CDS-3UTR CCA 90 bp | TCTCAAACCCCGCCTCAGAAGGCCAGCGGCCCCTCTGCCTTCCAGACGCACCCCTCCTCTCGCGAATGTTaGCGGCCTGGCGCTGGGCAT | + |
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Preference number: 4 (lower is better) Translates to: SQTPPQKASGPSAFQTHPSSREC*RPGAGH Trigger: ATGCCCAGCGCCAGGCCGCCAACATTCGCGAGAGGA...GGGGTGCGTCTGGAAGGCAGAGGGGCCGCTGGCCTTCTGAGGCGGGGTTTGAGA 67% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 1 transcripts: ENSMUST00000061035.4 |
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| CDS-3UTR TCA 90 bp | CCATCTCAAACCCCGCCTCAGAAGGCCAGCGGCCCCTCTGCCTTCCAGACGCACGCAGGAGCTCGGTCATaGAGGAAATGTAGACGATGG | + |
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Preference number: 4 (lower is better) Translates to: PSQTPPQKASGPSAFQTHAGARS*RKCRRW Trigger: CCATCGTCTACATTTCCTTCATGACCGAGCTCCTGC...GTGCGTCTGGAAGGCAGAGGGGCCGCTGGCCTTCTGAGGCGGGGTTTGAGATGG 61% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000061035.4 |
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| CDS-3UTR CCA 90 bp | CCATCTCAAACCCCGCCTCAGAAGGCCAGCGGCCCCTCTGCCTTCCAGACGCACAGAGAAGAGGGTGTCTaGGAGAGGCCAGAGAGAGAT | + |
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Preference number: 4 (lower is better) Translates to: PSQTPPQKASGPSAFQTHREEGV*ERPERD Trigger: ATCTCTCTCTGGCCTCTCCCAGACACCCTCTTCTCT...GTGCGTCTGGAAGGCAGAGGGGCCGCTGGCCTTCTGAGGCGGGGTTTGAGATGG 61% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000061035.4 |
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| CDS-3UTR GCA 90 bp | GGAGTTTACCATCTCAAACCCCGCCTCAGAAGGCCAGCGGCCCCTCTGCCTTCCCCTCCTTTTCCTCCTTaGTCTGCAGGAGCTCGGTCA | + |
|
Preference number: 4 (lower is better) Translates to: GVYHLKPRLRRPAAPLPSPPFPP*SAGARS Trigger: TGACCGAGCTCCTGCAGAGCAAGGAGGAAAAGGAGG...GGAAGGCAGAGGGGCCGCTGGCCTTCTGAGGCGGGGTTTGAGATGGTAAACTCC 60% GC, longest homopolymer 4 nt, total homopolymer stretches 16 nt. Matches the following 1 transcripts: ENSMUST00000061035.4 |
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| CDS-3UTR CCA 90 bp | CCGGATCCCCAACTTATTCACTGCAGAGCTGCCGCGAGTGGGGAGTTTACCATCACCTTTCTGCGCAGCTaGTCGAAGGCCTCGTTTAGG | + |
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Preference number: 4 (lower is better) Translates to: PDPQLIHCRAAASGEFTITFLRS*SKASFR Trigger: CCTAAACGAGGCCTTCGACCAGCTGCGCAGAAAGGT...GATGGTAAACTCCCCACTCGCGGCAGCTCTGCAGTGAATAAGTTGGGGATCCGG 57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000061035.4 |
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| CDS-3UTR CCA 90 bp | TATTCACTGCAGAGCTGCCGCGAGTGGGGAGTTTACCATCTCAAACCCCGCCTCAGGAAATGTAGACGATaGCCAAGCGGAGGGTCTCGA | + |
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Preference number: 4 (lower is better) Translates to: YSLQSCREWGVYHLKPRLRKCRR*PSGGSR Trigger: TCGAGACCCTCCGCTTGGCCATCGTCTACATTTCCT...GAGGCGGGGTTTGAGATGGTAAACTCCCCACTCGCGGCAGCTCTGCAGTGAATA 56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000061035.4 |
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| CDS-3UTR GCA 90 bp | GGTCCGTGGAGGAGCAGACCAGTTTCCCACCTGCTCCAAGCAAGAAGCTCTAACTATCTTTCATCAAACTaGGACAGTCTCCCAGGTCTT | + |
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Preference number: 4 (lower is better) Translates to: GPWRSRPVSHLLQARSSNYLSSN*DSLPGL Trigger: AAGACCTGGGAGACTGTCGCAGTTTGATGAAAGATA...GTTAGAGCTTCTTGCTTGGAGCAGGTGGGAAACTGGTCTGCTCCTCCACGGACC 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000061035.4 |
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| CDS-3UTR GCA 90 bp | TTTATTATTTCTACTGTTGAAAAGGAGCAAGGAGGAGAGATCACCAGAGGTCCGTTTTCCTCCTTGCTCTaGAGGAGCTCGGTCATGAAG | + |
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Preference number: 4 (lower is better) Translates to: FIISTVEKEQGGEITRGPFSSLL*RSSVMK Trigger: CTTCATGACCGAGCTCCTGCAGAGCAAGGAGGAAAA...CGGACCTCTGGTGATCTCTCCTCCTTGCTCCTTTTCAACAGTAGAAATAATAAA 46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000061035.4 |
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| CDS-3UTR CAA 90 bp | ACCATCTCAAACCCCGCCTCAGAAGGCCAGCGGCCCCTCTGCCTTCCAGACGCAGCCTCCTTTTCCTCCTaGCTCTGCAGGAGCTCGGTC | + |
|
Preference number: 5 (lower is better) Translates to: TISNPASEGQRPLCLPDAASFSS*LCRSSV Trigger: GACCGAGCTCCTGCAGAGCAAGGAGGAAAAGGAGGC...TGCGTCTGGAAGGCAGAGGGGCCGCTGGCCTTCTGAGGCGGGGTTTGAGATGGT 63% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 1 transcripts: ENSMUST00000061035.4 |
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| CDS-3UTR CAA 90 bp | GAGGTCCGTGGAGGAGCAGACCAGTTTCCCACCTGCTCCAAGCAAGAAGCTCTATTCCTCTCGCGAATGTaGGCGGCCTGGCGCTGGGCA | + |
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Preference number: 5 (lower is better) Translates to: EVRGGADQFPTCSKQEALFLSRM*AAWRWA Trigger: TGCCCAGCGCCAGGCCGCCAACATTCGCGAGAGGAA...TAGAGCTTCTTGCTTGGAGCAGGTGGGAAACTGGTCTGCTCCTCCACGGACCTC 61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000061035.4 |
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| CDS-3UTR CAA 90 bp | CCGGATCCCCAACTTATTCACTGCAGAGCTGCCGCGAGTGGGGAGTTTACCATCAAGGCCTCGTTTAGGTaGAACATCCTCTTCCTCTCG | + |
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Preference number: 5 (lower is better) Translates to: PDPQLIHCRAAASGEFTIKASFR*NILFLS Trigger: CGAGAGGAAGAGGATGTTCAACCTAAACGAGGCCTT...GATGGTAAACTCCCCACTCGCGGCAGCTCTGCAGTGAATAAGTTGGGGATCCGG 54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000061035.4 |
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| CDS CCA 72 bp | TCTCGATCCTCGACAGTCTCTTCTCATAAGCGAAGGTaGGTACCTTTCTGCGCAGCTGGTCGAAGGCCTCGT | + |
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Preference number: 6 (lower is better) Translates to: SRSSTVSSHKRR*VPFCAAGRRPR Trigger: ACGAGGCCTTCGACCAGCTGCGCAGAAAGGTACCCACCTTCGCTTATGAGAAGAGACTGTCGAGGATCGAGA 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000061035.4 |
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| CDS TCA 72 bp | GGGTCCTCATATTCCACTTCGTCCCCCTCTACTTCCTaGTATCTTTCATCAAACTGCGACAGTCTCCCAGGT | + |
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Preference number: 6 (lower is better) Translates to: GSSYSTSSPSTS*YLSSNCDSLPG Trigger: ACCTGGGAGACTGTCGCAGTTTGATGAAAGATATCAGGAAGTAGAGGGGGACGAAGTGGAATATGAGGACCC 50% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000061035.4 |
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