RADAR | Search for sensor designs | Human genes | Mouse genes | Code

Pregenerated sensors for FER (Mus musculus)

Ensembl gene IDs: ENSMUSG00000000127

Ensembl transcript IDs: ENSMUST00000000129.14, ENSMUST00000038080.7, ENSMUST00000232945.2, ENSMUST00000233190.2, ENSMUST00000233225.2

Found 291 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).

Type Sensor Details
3UTR GCA 90 bp TGGCAGAGTGGAGAGCAACTGTGGTGGGCACGTGTCCTGCAAGCATaGGCTACCAAGGCTGTTTATAGCACCAACCGAGGAGGGCCTGTG +
Preference number: 1 (lower is better)
Translates to: WQSGEQLWWARVLQA*ATKAVYSTNRGGPV
Trigger: CACAGGCCCTCCTCGGTTGGTGCTATAAACAGCCTTGGTAGCGCATGCTTGCAGGACACGTGCCCACCACAGTTGCTCTCCACTCTGCCA
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000000129.14
ENSMUST00000233190.2
3UTR CCA 90 bp ATATTTATAGATATAATCTCGCCTTGGCAGAGTGGAGAGCAACTGTaGTGGGCACGTGTCCTGCAAGCATGCGCTACCAAGGCTGTTTAT +
Preference number: 1 (lower is better)
Translates to: IFIDIISPWQSGEQL*WARVLQACATKAVY
Trigger: ATAAACAGCCTTGGTAGCGCATGCTTGCAGGACACGTGCCCACCACAGTTGCTCTCCACTCTGCCAAGGCGAGATTATATCTATAAATAT
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000233190.2
3UTR TCA 90 bp CTCTGGAGTGACATACGAGGATCACGTACCAGGCGATACTCGCGCTaGCAAGTTACACTGACGTTCCATTTTCCTAAACAGATTTTTACA +
Preference number: 1 (lower is better)
Translates to: LWSDIRGSRTRRYSR*QVTLTFHFPKQIFT
Trigger: TGTAAAAATCTGTTTAGGAAAATGGAACGTCAGTGTAACTTGTCAGCGCGAGTATCGCCTGGTACGTGATCCTCGTATGTCACTCCAGAG
46% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000232945.2
3UTR CCA 90 bp CCAATATATGATTATATTTATAGATATAATCTCGCCTTGGCAGAGTaGAGAGCAACTGTGGTGGGCACGTGTCCTGCAAGCATGCGCTAC +
Preference number: 1 (lower is better)
Translates to: PIYDYIYRYNLALAE*RATVVGTCPASMRY
Trigger: GTAGCGCATGCTTGCAGGACACGTGCCCACCACAGTTGCTCTCCACTCTGCCAAGGCGAGATTATATCTATAAATATAATCATATATTGG
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000233190.2
3UTR CCA 90 bp CCTGTGCTTTTCTCTTTACAGCGGTATCAAATGGCAGGGTTGCTGTaGTTAGCTAATACGGCTCTGGGTAGGACTATTTATTTCTTGAAT +
Preference number: 1 (lower is better)
Translates to: PVLFSLQRYQMAGLL*LANTALGRTIYFLN
Trigger: ATTCAAGAAATAAATAGTCCTACCCAGAGCCGTATTAGCTAACCACAGCAACCCTGCCATTTGATACCGCTGTAAAGAGAAAAGCACAGG
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000000129.14
ENSMUST00000233190.2
3UTR GCA 90 bp TTTGTCAATAACAGGAAGACAGAAAACCAGAAAACAAACATATTCTaGCAGTTTGTGGCTGTCCATGCTTGTTGCTACAAGTTGTTACAA +
Preference number: 1 (lower is better)
Translates to: FVNNRKTENQKTNIF*QFVAVHACCYKLLQ
Trigger: TTGTAACAACTTGTAGCAACAAGCATGGACAGCCACAAACTGGCAGAATATGTTTGTTTTCTGGTTTTCTGTCTTCCTGTTATTGACAAA
38% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000232945.2
3UTR-3UTR CCA 90 bp TGGCAGAGTGGAGAGCAACTGTGGTGGGCACGTGTCCTGCAAGCATGCGCTACCATGGCAGGGTTGCTGTaGTTAGCTAATACGGCTCTG +
Preference number: 2 (lower is better)
Translates to: WQSGEQLWWARVLQACATMAGLL*LANTAL
Trigger: CAGAGCCGTATTAGCTAACCACAGCAACCCTGCCAT...GGTAGCGCATGCTTGCAGGACACGTGCCCACCACAGTTGCTCTCCACTCTGCCA
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000000129.14
ENSMUST00000233190.2
3UTR-3UTR TCA 90 bp AGCAACTGTGGTGGGCACGTGTCCTGCAAGCATGCGCTACCAAGGCTGTTTATAGGTATAAAGTGGGGGTaGCTGAGGACAGAGTCCTAC +
Preference number: 2 (lower is better)
Translates to: SNCGGHVSCKHALPRLFIGIKWG*LRTESY
Trigger: GTAGGACTCTGTCCTCAGTCACCCCCACTTTATACC...TATAAACAGCCTTGGTAGCGCATGCTTGCAGGACACGTGCCCACCACAGTTGCT
53% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000000129.14
ENSMUST00000233190.2
3UTR-3UTR CCA 90 bp GGTGGGCACGTGTCCTGCAAGCATGCGCTACCAAGGCTGTTTATAGCACCAACCGCAGGCCTTTTTCTTTaGCCTTTACCATTAGTCCTG +
Preference number: 2 (lower is better)
Translates to: GGHVSCKHALPRLFIAPTAGLFL*PLPLVL
Trigger: CAGGACTAATGGTAAAGGCCAAAGAAAAAGGCCTGC...GGTTGGTGCTATAAACAGCCTTGGTAGCGCATGCTTGCAGGACACGTGCCCACC
52% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000000129.14
ENSMUST00000233190.2
3UTR-3UTR TCA 90 bp CCTGTGCTTTTCTCTTTACAGCGGTATCAAATGGCAGGGTTGCTGTGGTTAGCTGGTATAAAGTGGGGGTaGCTGAGGACAGAGTCCTAC +
Preference number: 2 (lower is better)
Translates to: PVLFSLQRYQMAGLLWLAGIKWG*LRTESY
Trigger: GTAGGACTCTGTCCTCAGTCACCCCCACTTTATACC...AGCTAACCACAGCAACCCTGCCATTTGATACCGCTGTAAAGAGAAAAGCACAGG
50% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000000129.14
ENSMUST00000233190.2
3UTR-3UTR TCA 90 bp CTATGCTCTTTCATACACCGATCTTGCCAAAATATAATGCACCTAACAGATACAACAAACCCCAAGGCCTaGAGCTCCCCTGGTAGCTCA +
Preference number: 2 (lower is better)
Translates to: LCSFIHRSCQNIMHLTDTTNPKA*SSPGSS
Trigger: TGAGCTACCAGGGGAGCTTCAGGCCTTGGGGTTTGT...TGTATCTGTTAGGTGCATTATATTTTGGCAAGATCGGTGTATGAAAGAGCATAG
46% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 1 transcripts:
ENSMUST00000232945.2
3UTR-3UTR CCA 90 bp CTTTTTCTTTGGCCTTTACCATTAGTCCTGTGCTTTTCTCTTTACAGCGGTATCATGGCAGGGTTGCTGTaGTTAGCTAATACGGCTCTG +
Preference number: 2 (lower is better)
Translates to: LFLWPLPLVLCFSLYSGIMAGLL*LANTAL
Trigger: CAGAGCCGTATTAGCTAACCACAGCAACCCTGCCAT...GATACCGCTGTAAAGAGAAAAGCACAGGACTAATGGTAAAGGCCAAAGAAAAAG
44% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000000129.14
ENSMUST00000233190.2
3UTR-3UTR CCA 90 bp CTAGAGTACTTTGGGAGCAACCAAACTAGTGTGGTAAAACAGGATGCTAATCCGTATTCTGCCAGTTTGTaGCTGTCCATGCTTGTTGCT +
Preference number: 2 (lower is better)
Translates to: LEYFGSNQTSVVKQDANPYSASL*LSMLVA
Trigger: AGCAACAAGCATGGACAGCCACAAACTGGCAGAATA...CGGATTAGCATCCTGTTTTACCACACTAGTTTGGTTGCTCCCAAAGTACTCTAG
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000232945.2
3UTR CAA 90 bp ATTAGTCCTGTGCTTTTCTCTTTACAGCGGTATCAAATGGCAGGGTaGCTGTGGTTAGCTAATACGGCTCTGGGTAGGACTATTTATTTC +
Preference number: 2 (lower is better)
Translates to: ISPVLFSLQRYQMAG*LWLANTALGRTIYF
Trigger: GAAATAAATAGTCCTACCCAGAGCCGTATTAGCTAACCACAGCAACCCTGCCATTTGATACCGCTGTAAAGAGAAAAGCACAGGACTAAT
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000000129.14
ENSMUST00000233190.2
3UTR CAA 90 bp TGGAGATCACCAATGGACCTAGGTATTAAAGGCAGGCCTTTTTCTTaGGCCTTTACCATTAGTCCTGTGCTTTTCTCTTTACAGCGGTAT +
Preference number: 2 (lower is better)
Translates to: WRSPMDLGIKGRPFS*AFTISPVLFSLQRY
Trigger: ATACCGCTGTAAAGAGAAAAGCACAGGACTAATGGTAAAGGCCAAAGAAAAAGGCCTGCCTTTAATACCTAGGTCCATTGGTGATCTCCA
43% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000000129.14
ENSMUST00000233190.2
3UTR-3UTR GCA 90 bp CTAGAGTACTTTGGGAGCAACCAAACTAGTGTGGTAAAACAGGATGCTAATCCGGCTGTCCATGCTTGTTaGTACAAGTTGTTACAAACC +
Preference number: 2 (lower is better)
Translates to: LEYFGSNQTSVVKQDANPAVHAC*YKLLQT
Trigger: GGTTTGTAACAACTTGTAGCAACAAGCATGGACAGC...CGGATTAGCATCCTGTTTTACCACACTAGTTTGGTTGCTCCCAAAGTACTCTAG
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000232945.2
3UTR-3UTR TCA 90 bp AACCAGAAAACAAACATATTCTGCCAGTTTGTGGCTGTCCATGCTTGTTGCTACGCTGACAAGTTACACTaGCGTTCCATTTTCCTAAAC +
Preference number: 2 (lower is better)
Translates to: NQKTNIFCQFVAVHACCYADKLH*RSIFLN
Trigger: GTTTAGGAAAATGGAACGTCAGTGTAACTTGTCAGC...GTAGCAACAAGCATGGACAGCCACAAACTGGCAGAATATGTTTGTTTTCTGGTT
42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000232945.2
3UTR-3UTR GCA 90 bp CTATGCTCTTTCATACACCGATCTTGCCAAAATATAATGCACCTAACAGATACATTGGTTTGGAAGCACTaGAAACTTTTAAAGGCGAAG +
Preference number: 2 (lower is better)
Translates to: LCSFIHRSCQNIMHLTDTLVWKH*KLLKAK
Trigger: CTTCGCCTTTAAAAGTTTGCAGTGCTTCCAAACCAA...TGTATCTGTTAGGTGCATTATATTTTGGCAAGATCGGTGTATGAAAGAGCATAG
38% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000232945.2
3UTR-3UTR CCA 90 bp CACCGTTTTTACTCCAAGAATTTTAATTACAGCCACAAATACTTTCCGTATTCCAAGCAAAACCGTTTTTaGTTTGGAAGCACTGCAAAC +
Preference number: 2 (lower is better)
Translates to: HRFYSKNFNYSHKYFPYSKQNRF*FGSTAN
Trigger: GTTTGCAGTGCTTCCAAACCAAAAACGGTTTTGCTT...GGAATACGGAAAGTATTTGTGGCTGTAATTAAAATTCTTGGAGTAAAAACGGTG
37% GC, longest homopolymer 5 nt, total homopolymer stretches 18 nt.
Matches the following 1 transcripts:
ENSMUST00000232945.2
3UTR-3UTR CCA 90 bp CTATGCTCTTTCATACACCGATCTTGCCAAAATATAATGCACCTAACAGATACACTGTCTCAAAAACGATaGCTGACATTTTCTAGAAAA +
Preference number: 2 (lower is better)
Translates to: LCSFIHRSCQNIMHLTDTLSQKR*LTFSRK
Trigger: TTTTCTAGAAAATGTCAGCCATCGTTTTTGAGACAG...TGTATCTGTTAGGTGCATTATATTTTGGCAAGATCGGTGTATGAAAGAGCATAG
36% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 1 transcripts:
ENSMUST00000232945.2
3UTR CCA 72 bp CCAAGGCTGTTTATAGCACCAACCGAGGAGGGCCTGTaGCAGAAGACAGCAGCCCACAGGCTGTGCCTAGAG +
Preference number: 3 (lower is better)
Translates to: PRLFIAPTEEGL*QKTAAHRLCLE
Trigger: CTCTAGGCACAGCCTGTGGGCTGCTGTCTTCTGCCACAGGCCCTCCTCGGTTGGTGCTATAAACAGCCTTGG
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000000129.14
ENSMUST00000233190.2
3UTR GCA 72 bp GGAGAGCAACTGTGGTGGGCACGTGTCCTGCAAGCATaGGCTACCAAGGCTGTTTATAGCACCAACCGAGGA +
Preference number: 3 (lower is better)
Translates to: GEQLWWARVLQA*ATKAVYSTNRG
Trigger: TCCTCGGTTGGTGCTATAAACAGCCTTGGTAGCGCATGCTTGCAGGACACGTGCCCACCACAGTTGCTCTCC
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000000129.14
ENSMUST00000233190.2
3UTR CCA 72 bp ATAATCTCGCCTTGGCAGAGTGGAGAGCAACTGTGGTaGGCACGTGTCCTGCAAGCATGCGCTACCAAGGCT +
Preference number: 3 (lower is better)
Translates to: IISPWQSGEQLW*ARVLQACATKA
Trigger: AGCCTTGGTAGCGCATGCTTGCAGGACACGTGCCCACCACAGTTGCTCTCCACTCTGCCAAGGCGAGATTAT
57% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000233190.2
3UTR CCA 72 bp GATATAATCTCGCCTTGGCAGAGTGGAGAGCAACTGTaGTGGGCACGTGTCCTGCAAGCATGCGCTACCAAG +
Preference number: 3 (lower is better)
Translates to: DIISPWQSGEQL*WARVLQACATK
Trigger: CTTGGTAGCGCATGCTTGCAGGACACGTGCCCACCACAGTTGCTCTCCACTCTGCCAAGGCGAGATTATATC
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000233190.2
3UTR-3UTR CAA 90 bp GGTGGGCACGTGTCCTGCAAGCATGCGCTACCAAGGCTGTTTATAGCACCAACCGGCAGGCCTTTTTCTTaGGCCTTTACCATTAGTCCT +
Preference number: 3 (lower is better)
Translates to: GGHVSCKHALPRLFIAPTGRPFS*AFTISP
Trigger: AGGACTAATGGTAAAGGCCAAAGAAAAAGGCCTGCC...GGTTGGTGCTATAAACAGCCTTGGTAGCGCATGCTTGCAGGACACGTGCCCACC
53% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000000129.14
ENSMUST00000233190.2
3UTR TCA 72 bp GACATACGAGGATCACGTACCAGGCGATACTCGCGCTaGCAAGTTACACTGACGTTCCATTTTCCTAAACAG +
Preference number: 3 (lower is better)
Translates to: DIRGSRTRRYSR*QVTLTFHFPKQ
Trigger: CTGTTTAGGAAAATGGAACGTCAGTGTAACTTGTCAGCGCGAGTATCGCCTGGTACGTGATCCTCGTATGTC
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000232945.2
3UTR CCA 72 bp GATTATATTTATAGATATAATCTCGCCTTGGCAGAGTaGAGAGCAACTGTGGTGGGCACGTGTCCTGCAAGC +
Preference number: 3 (lower is better)
Translates to: DYIYRYNLALAE*RATVVGTCPAS
Trigger: GCTTGCAGGACACGTGCCCACCACAGTTGCTCTCCACTCTGCCAAGGCGAGATTATATCTATAAATATAATC
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000233190.2
3UTR GCA 72 bp AACATATTCTGCCAGTTTGTGGCTGTCCATGCTTGTTaGTACAAGTTGTTACAAACCCCAAGGCCTGAAGCT +
Preference number: 3 (lower is better)
Translates to: NIFCQFVAVHAC*YKLLQTPRPEA
Trigger: AGCTTCAGGCCTTGGGGTTTGTAACAACTTGTAGCAACAAGCATGGACAGCCACAAACTGGCAGAATATGTT
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000232945.2
3UTR GCA 72 bp GAAAACAAACATATTCTGCCAGTTTGTGGCTGTCCATaGTTGTTGCTACAAGTTGTTACAAACCCCAAGGCC +
Preference number: 3 (lower is better)
Translates to: ENKHILPVCGCP*LLLQVVTNPKA
Trigger: GGCCTTGGGGTTTGTAACAACTTGTAGCAACAAGCATGGACAGCCACAAACTGGCAGAATATGTTTGTTTTC
44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000232945.2
3UTR CCA 72 bp TTCTCTTTACAGCGGTATCAAATGGCAGGGTTGCTGTaGTTAGCTAATACGGCTCTGGGTAGGACTATTTAT +
Preference number: 3 (lower is better)
Translates to: FSLQRYQMAGLL*LANTALGRTIY
Trigger: ATAAATAGTCCTACCCAGAGCCGTATTAGCTAACCACAGCAACCCTGCCATTTGATACCGCTGTAAAGAGAA
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000000129.14
ENSMUST00000233190.2
3UTR TCA 72 bp CACGTACCAGGCGATACTCGCGCTGACAAGTTACACTaGCGTTCCATTTTCCTAAACAGATTTTTACACATA +
Preference number: 3 (lower is better)
Translates to: HVPGDTRADKLH*RSIFLNRFLHI
Trigger: TATGTGTAAAAATCTGTTTAGGAAAATGGAACGTCAGTGTAACTTGTCAGCGCGAGTATCGCCTGGTACGTG
43% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000232945.2
3UTR-3UTR CAA 90 bp AAACCAGAAAACAAACATATTCTGCCAGTTTGTGGCTGTCCATGCTTGTTGCTAGTTATGCAAGACTCCTaGGACTCTTTACAAGGAAAT +
Preference number: 3 (lower is better)
Translates to: KPENKHILPVCGCPCLLLVMQDS*DSLQGN
Trigger: ATTTCCTTGTAAAGAGTCCAAGGAGTCTTGCATAAC...TAGCAACAAGCATGGACAGCCACAAACTGGCAGAATATGTTTGTTTTCTGGTTT
40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000232945.2
3UTR-3UTR CAA 90 bp CACCGTTTTTACTCCAAGAATTTTAATTACAGCCACAAATACTTTCCGTATTCCACATATTCTGCCAGTTaGTGGCTGTCCATGCTTGTT +
Preference number: 3 (lower is better)
Translates to: HRFYSKNFNYSHKYFPYSTYSAS*WLSMLV
Trigger: AACAAGCATGGACAGCCACAAACTGGCAGAATATGT...GGAATACGGAAAGTATTTGTGGCTGTAATTAAAATTCTTGGAGTAAAAACGGTG
39% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000232945.2
3UTR CCA 72 bp GGCTTTGTTATCAGGAAAATGTTATGCAAGACTCCTTaGACTCTTTACAAGGAAATATCAAAGAGAGTGAAT +
Preference number: 3 (lower is better)
Translates to: GFVIRKMLCKTP*TLYKEISKRVN
Trigger: ATTCACTCTCTTTGATATTTCCTTGTAAAGAGTCCAAGGAGTCTTGCATAACATTTTCCTGATAACAAAGCC
36% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000232945.2
CDS-3UTR TCA 90 bp TGGCAGAGTGGAGAGCAACTGTGGTGGGCACGTGTCCTGCAAGCATGCGCTACCGGCAGACTCCTAGGCTaGAGGTCTCCCAGAGGAGGA +
Preference number: 4 (lower is better)
Translates to: WQSGEQLWWARVLQACATGRLLG*RSPRGG
Trigger: TCCTCCTCTGGGAGACCTTCAGCCTAGGAGTCTGCC...GGTAGCGCATGCTTGCAGGACACGTGCCCACCACAGTTGCTCTCCACTCTGCCA
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000000129.14
ENSMUST00000233190.2
CDS-3UTR TCA 90 bp CTTGGCAGAGTGGAGAGCAACTGTGGTGGGCACGTGTCCTGCAAGCATGCGCTACCTTTGGGATGGGGTTaGGCAGAACCACCCCAGACT +
Preference number: 4 (lower is better)
Translates to: LGRVESNCGGHVSCKHALPLGWG*AEPPQT
Trigger: AGTCTGGGGTGGTTCTGCTCAACCCCATCCCAAAGG...TAGCGCATGCTTGCAGGACACGTGCCCACCACAGTTGCTCTCCACTCTGCCAAG
59% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000000129.14
ENSMUST00000233190.2
CDS-3UTR GCA 90 bp CTTGGCAGAGTGGAGAGCAACTGTGGTGGGCACGTGTCCTGCAAGCATGCGCTAGCTCTGATGGAGCTGTaGCCCCTTCAGTGCCAACAC +
Preference number: 4 (lower is better)
Translates to: LGRVESNCGGHVSCKHALALMEL*PLQCQH
Trigger: GTGTTGGCACTGAAGGGGGCACAGCTCCATCAGAGC...TAGCGCATGCTTGCAGGACACGTGCCCACCACAGTTGCTCTCCACTCTGCCAAG
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000000129.14
ENSMUST00000233190.2
CDS-3UTR GCA 90 bp TGGCAGAGTGGAGAGCAACTGTGGTGGGCACGTGTCCTGCAAGCATGCGCTACCCTTCAGCAGTTCCTGTaGCTCTATCCTGGGGATGGC +
Preference number: 4 (lower is better)
Translates to: WQSGEQLWWARVLQACATLQQFL*LYPGDG
Trigger: GCCATCCCCAGGATAGAGGCACAGGAACTGCTGAAG...GGTAGCGCATGCTTGCAGGACACGTGCCCACCACAGTTGCTCTCCACTCTGCCA
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000000129.14
ENSMUST00000233190.2
CDS-3UTR GCA 90 bp CTTGGCAGAGTGGAGAGCAACTGTGGTGGGCACGTGTCCTGCAAGCATGCGCTACTTCAGCAGTTCCTGTaGCTCTATCCTGGGGATGGC +
Preference number: 4 (lower is better)
Translates to: LGRVESNCGGHVSCKHALLQQFL*LYPGDG
Trigger: GCCATCCCCAGGATAGAGGCACAGGAACTGCTGAAG...TAGCGCATGCTTGCAGGACACGTGCCCACCACAGTTGCTCTCCACTCTGCCAAG
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000000129.14
ENSMUST00000233190.2
CDS-3UTR CCA 90 bp TGTGGTGGGCACGTGTCCTGCAAGCATGCGCTACCAAGGCTGTTTATAGCACCACTGGGGATGGCACCATaGTACCAGTCATGCTCCGCC +
Preference number: 4 (lower is better)
Translates to: CGGHVSCKHALPRLFIAPLGMAP*YQSCSA
Trigger: GGCGGAGCATGACTGGTACCATGGTGCCATCCCCAG...TGGTGCTATAAACAGCCTTGGTAGCGCATGCTTGCAGGACACGTGCCCACCACA
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000000129.14
ENSMUST00000233190.2
CDS-3UTR CCA 90 bp TGGCAGAGTGGAGAGCAACTGTGGTGGGCACGTGTCCTGCAAGCATGCGCTACCCCTCTATCCTGGGGATaGCACCATGGTACCAGTCAT +
Preference number: 4 (lower is better)
Translates to: WQSGEQLWWARVLQACATPLSWG*HHGTSH
Trigger: ATGACTGGTACCATGGTGCCATCCCCAGGATAGAGG...GGTAGCGCATGCTTGCAGGACACGTGCCCACCACAGTTGCTCTCCACTCTGCCA
58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000000129.14
ENSMUST00000233190.2
CDS-3UTR CCA 90 bp GGTGGGCACGTGTCCTGCAAGCATGCGCTACCAAGGCTGTTTATAGCACCAACCTCACCAGGTTTCCCATaGCTCTCCCGCACCAGGAAG +
Preference number: 4 (lower is better)
Translates to: GGHVSCKHALPRLFIAPTSPGFP*LSRTRK
Trigger: CTTCCTGGTGCGGGAGAGCCATGGGAAACCTGGTGA...GGTTGGTGCTATAAACAGCCTTGGTAGCGCATGCTTGCAGGACACGTGCCCACC
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000000129.14
ENSMUST00000233190.2
CDS-3UTR TCA 90 bp GTAAGGTGGTATAAAGTGGGGGTGACTGAGGACAGAGTCCTACAGGTGGCATCCGGCAGACTCCTAGGCTaGAGGTCTCCCAGAGGAGGA +
Preference number: 4 (lower is better)
Translates to: VRWYKVGVTEDRVLQVASGRLLG*RSPRGG
Trigger: TCCTCCTCTGGGAGACCTTCAGCCTAGGAGTCTGCC...GGATGCCACCTGTAGGACTCTGTCCTCAGTCACCCCCACTTTATACCACCTTAC
57% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000000129.14
ENSMUST00000038080.7
ENSMUST00000233190.2
CDS-3UTR TCA 90 bp GCAGTAAGGTGGTATAAAGTGGGGGTGACTGAGGACAGAGTCCTACAGGTGGCACCTTTGGGATGGGGTTaGGCAGAACCACCCCAGACT +
Preference number: 4 (lower is better)
Translates to: AVRWYKVGVTEDRVLQVAPLGWG*AEPPQT
Trigger: AGTCTGGGGTGGTTCTGCTCAACCCCATCCCAAAGG...TGCCACCTGTAGGACTCTGTCCTCAGTCACCCCCACTTTATACCACCTTACTGC
56% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 3 transcripts:
ENSMUST00000000129.14
ENSMUST00000038080.7
ENSMUST00000233190.2
CDS-3UTR TCA 90 bp GTTGCAGTAAGGTGGTATAAAGTGGGGGTGACTGAGGACAGAGTCCTACAGGTGGGCAGACTCCTAGGCTaGAGGTCTCCCAGAGGAGGA +
Preference number: 4 (lower is better)
Translates to: VAVRWYKVGVTEDRVLQVGRLLG*RSPRGG
Trigger: TCCTCCTCTGGGAGACCTTCAGCCTAGGAGTCTGCC...CACCTGTAGGACTCTGTCCTCAGTCACCCCCACTTTATACCACCTTACTGCAAC
56% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000000129.14
ENSMUST00000038080.7
ENSMUST00000233190.2
CDS-3UTR TCA 90 bp TGGCAGAGTGGAGAGCAACTGTGGTGGGCACGTGTCCTGCAAGCATGCGCTACCACAGTGAGCTCTTTGTaGAGGTCGTTGAACTTAGGG +
Preference number: 4 (lower is better)
Translates to: WQSGEQLWWARVLQACATTVSSL*RSLNLG
Trigger: CCCTAAGTTCAACGACCTTCACAAAGAGCTCACTGT...GGTAGCGCATGCTTGCAGGACACGTGCCCACCACAGTTGCTCTCCACTCTGCCA
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000000129.14
ENSMUST00000233190.2
CDS-3UTR CCA 90 bp TGGCAGAGTGGAGAGCAACTGTGGTGGGCACGTGTCCTGCAAGCATGCGCTACCTGTCATAGCGCTCCTTaGCCTTTTCTGTTTCCTTCC +
Preference number: 4 (lower is better)
Translates to: WQSGEQLWWARVLQACATCHSAP*PFLFPS
Trigger: GGAAGGAAACAGAAAAGGCCAAGGAGCGCTATGACA...GGTAGCGCATGCTTGCAGGACACGTGCCCACCACAGTTGCTCTCCACTCTGCCA
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000000129.14
ENSMUST00000233190.2
CDS-3UTR CCA 90 bp TGGCAGAGTGGAGAGCAACTGTGGTGGGCACGTGTCCTGCAAGCATGCGCTACCGCAGCAGAGGAAGTGTaGTATCATAGTACTGGCTCT +
Preference number: 4 (lower is better)
Translates to: WQSGEQLWWARVLQACATAAEEV*YHSTGS
Trigger: AGAGCCAGTACTATGATACCACACTTCCTCTGCTGC...GGTAGCGCATGCTTGCAGGACACGTGCCCACCACAGTTGCTCTCCACTCTGCCA
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000000129.14
ENSMUST00000233190.2
CDS-3UTR CCA 90 bp GTTGCAGTAAGGTGGTATAAAGTGGGGGTGACTGAGGACAGAGTCCTACAGGTGCTGGGGATGGCACCATaGTACCAGTCATGCTCCGCC +
Preference number: 4 (lower is better)
Translates to: VAVRWYKVGVTEDRVLQVLGMAP*YQSCSA
Trigger: GGCGGAGCATGACTGGTACCATGGTGCCATCCCCAG...CACCTGTAGGACTCTGTCCTCAGTCACCCCCACTTTATACCACCTTACTGCAAC
56% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000000129.14
ENSMUST00000038080.7
ENSMUST00000233190.2
CDS-3UTR CCA 90 bp GTAAGGTGGTATAAAGTGGGGGTGACTGAGGACAGAGTCCTACAGGTGGCATCCTCACCAGGTTTCCCATaGCTCTCCCGCACCAGGAAG +
Preference number: 4 (lower is better)
Translates to: VRWYKVGVTEDRVLQVASSPGFP*LSRTRK
Trigger: CTTCCTGGTGCGGGAGAGCCATGGGAAACCTGGTGA...GGATGCCACCTGTAGGACTCTGTCCTCAGTCACCCCCACTTTATACCACCTTAC
56% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000000129.14
ENSMUST00000038080.7
ENSMUST00000233190.2
CDS-3UTR TCA 90 bp TGTGGTGGGCACGTGTCCTGCAAGCATGCGCTACCAAGGCTGTTTATAGCACCAAAGCTGGGGAATGTTTaGAAACCCGGTGCCCTCGAA +
Preference number: 4 (lower is better)
Translates to: CGGHVSCKHALPRLFIAPKLGNV*KPGALE
Trigger: TTCGAGGGCACCGGGTTTTCAAACATTCCCCAGCTT...TGGTGCTATAAACAGCCTTGGTAGCGCATGCTTGCAGGACACGTGCCCACCACA
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000000129.14
ENSMUST00000233190.2
CDS-3UTR GCA 90 bp TGGCAGAGTGGAGAGCAACTGTGGTGGGCACGTGTCCTGCAAGCATGCGCTACCCGTAGTTCCCAGTCTTaGAACTTTAACACAGCTTCC +
Preference number: 4 (lower is better)
Translates to: WQSGEQLWWARVLQACATRSSQS*NFNTAS
Trigger: GGAAGCTGTGTTAAAGTTGCAAGACTGGGAACTACG...GGTAGCGCATGCTTGCAGGACACGTGCCCACCACAGTTGCTCTCCACTCTGCCA
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000000129.14
ENSMUST00000233190.2
CDS-3UTR GCA 90 bp CTTGGCAGAGTGGAGAGCAACTGTGGTGGGCACGTGTCCTGCAAGCATGCGCTACTGTGCCCCCTTCAGTaGCAACACATACTGATTATG +
Preference number: 4 (lower is better)
Translates to: LGRVESNCGGHVSCKHALLCPLQ*QHILIM
Trigger: CATAATCAGTATGTGTTGGCACTGAAGGGGGCACAG...TAGCGCATGCTTGCAGGACACGTGCCCACCACAGTTGCTCTCCACTCTGCCAAG
54% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000000129.14
ENSMUST00000233190.2
CDS-3UTR GCA 90 bp TGTGGTGGGCACGTGTCCTGCAAGCATGCGCTACCAAGGCTGTTTATAGCACCACACACTTTGCCTCAGTaGATCGCAACTGCTGGACTG +
Preference number: 4 (lower is better)
Translates to: CGGHVSCKHALPRLFIAPHTLPQ*IATAGL
Trigger: CAGTCCAGCAGTTGCGATGCACTGAGGCAAAGTGTG...TGGTGCTATAAACAGCCTTGGTAGCGCATGCTTGCAGGACACGTGCCCACCACA
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000000129.14
ENSMUST00000233190.2
CDS-3UTR GCA 90 bp TGGCAGAGTGGAGAGCAACTGTGGTGGGCACGTGTCCTGCAAGCATGCGCTACCTGTTTGAAAACCCGGTaGCCTCGAATCGATACAGAT +
Preference number: 4 (lower is better)
Translates to: WQSGEQLWWARVLQACATCLKTR*PRIDTD
Trigger: ATCTGTATCGATTCGAGGGCACCGGGTTTTCAAACA...GGTAGCGCATGCTTGCAGGACACGTGCCCACCACAGTTGCTCTCCACTCTGCCA
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000000129.14
ENSMUST00000233190.2
CDS-3UTR GCA 90 bp CTTGGCAGAGTGGAGAGCAACTGTGGTGGGCACGTGTCCTGCAAGCATGCGCTAGAAAATCTCACCAACTaGTTCAGCTTCAGCTCGTCC +
Preference number: 4 (lower is better)
Translates to: LGRVESNCGGHVSCKHALENLTN*FSFSSS
Trigger: GGACGAGCTGAAGCTGAAGCAGTTGGTGAGATTTTC...TAGCGCATGCTTGCAGGACACGTGCCCACCACAGTTGCTCTCCACTCTGCCAAG
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000000129.14
ENSMUST00000233190.2
CDS-3UTR CCA 90 bp CTTGGCAGAGTGGAGAGCAACTGTGGTGGGCACGTGTCCTGCAAGCATGCGCTAGTGCATCGCAACTGCTaGACTGACTGTTTCAACTCT +
Preference number: 4 (lower is better)
Translates to: LGRVESNCGGHVSCKHALVHRNC*TDCFNS
Trigger: AGAGTTGAAACAGTCAGTCCAGCAGTTGCGATGCAC...TAGCGCATGCTTGCAGGACACGTGCCCACCACAGTTGCTCTCCACTCTGCCAAG
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000000129.14
ENSMUST00000233190.2
CDS-3UTR CCA 90 bp GTTGCAGTAAGGTGGTATAAAGTGGGGGTGACTGAGGACAGAGTCCTACAGGTGCCTGTGCCTCTATCCTaGGGATGGCACCATGGTACC +
Preference number: 4 (lower is better)
Translates to: VAVRWYKVGVTEDRVLQVPVPLS*GWHHGT
Trigger: GGTACCATGGTGCCATCCCCAGGATAGAGGCACAGG...CACCTGTAGGACTCTGTCCTCAGTCACCCCCACTTTATACCACCTTACTGCAAC
54% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000000129.14
ENSMUST00000038080.7
ENSMUST00000233190.2
CDS-3UTR CCA 90 bp GTTGCAGTAAGGTGGTATAAAGTGGGGGTGACTGAGGACAGAGTCCTACAGGTGTCACCAGGTTTCCCATaGCTCTCCCGCACCAGGAAG +
Preference number: 4 (lower is better)
Translates to: VAVRWYKVGVTEDRVLQVSPGFP*LSRTRK
Trigger: CTTCCTGGTGCGGGAGAGCCATGGGAAACCTGGTGA...CACCTGTAGGACTCTGTCCTCAGTCACCCCCACTTTATACCACCTTACTGCAAC
54% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000000129.14
ENSMUST00000038080.7
ENSMUST00000233190.2
CDS-3UTR TCA 90 bp GTAAGGTGGTATAAAGTGGGGGTGACTGAGGACAGAGTCCTACAGGTGGCATCCAAGCTGGGGAATGTTTaGAAACCCGGTGCCCTCGAA +
Preference number: 4 (lower is better)
Translates to: VRWYKVGVTEDRVLQVASKLGNV*KPGALE
Trigger: TTCGAGGGCACCGGGTTTTCAAACATTCCCCAGCTT...GGATGCCACCTGTAGGACTCTGTCCTCAGTCACCCCCACTTTATACCACCTTAC
53% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000000129.14
ENSMUST00000038080.7
ENSMUST00000233190.2
CDS-3UTR GCA 90 bp GTAAGGTGGTATAAAGTGGGGGTGACTGAGGACAGAGTCCTACAGGTGGCATCCCACACTTTGCCTCAGTaGATCGCAACTGCTGGACTG +
Preference number: 4 (lower is better)
Translates to: VRWYKVGVTEDRVLQVASHTLPQ*IATAGL
Trigger: CAGTCCAGCAGTTGCGATGCACTGAGGCAAAGTGTG...GGATGCCACCTGTAGGACTCTGTCCTCAGTCACCCCCACTTTATACCACCTTAC
53% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000000129.14
ENSMUST00000233190.2
CDS-3UTR GCA 90 bp GGTGGGCACGTGTCCTGCAAGCATGCGCTACCAAGGCTGTTTATAGCACCAACCCAGCAAAGCTTTCTGTaGTGCACACTTTGCCTCAGT +
Preference number: 4 (lower is better)
Translates to: GGHVSCKHALPRLFIAPTQQSFL*CTLCLS
Trigger: ACTGAGGCAAAGTGTGCAGCACAGAAAGCTTTGCTG...GGTTGGTGCTATAAACAGCCTTGGTAGCGCATGCTTGCAGGACACGTGCCCACC
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000000129.14
ENSMUST00000233190.2
CDS-3UTR CCA 90 bp CTTGGCAGAGTGGAGAGCAACTGTGGTGGGCACGTGTCCTGCAAGCATGCGCTATCAAGTGCCTGTTTTTaGCCCAGAAGAAGCACAATG +
Preference number: 4 (lower is better)
Translates to: LGRVESNCGGHVSCKHALSSACF*PRRSTM
Trigger: CATTGTGCTTCTTCTGGGCCAAAAACAGGCACTTGA...TAGCGCATGCTTGCAGGACACGTGCCCACCACAGTTGCTCTCCACTCTGCCAAG
53% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000000129.14
ENSMUST00000233190.2
CDS-3UTR CCA 90 bp GTAAGGTGGTATAAAGTGGGGGTGACTGAGGACAGAGTCCTACAGGTGGCATCCCCTCTATCCTGGGGATaGCACCATGGTACCAGTCAT +
Preference number: 4 (lower is better)
Translates to: VRWYKVGVTEDRVLQVASPLSWG*HHGTSH
Trigger: ATGACTGGTACCATGGTGCCATCCCCAGGATAGAGG...GGATGCCACCTGTAGGACTCTGTCCTCAGTCACCCCCACTTTATACCACCTTAC
53% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 3 transcripts:
ENSMUST00000000129.14
ENSMUST00000038080.7
ENSMUST00000233190.2
CDS-3UTR CCA 90 bp ATGGTTGCAGTAAGGTGGTATAAAGTGGGGGTGACTGAGGACAGAGTCCTACAGCCTGTGCCTCTATCCTaGGGATGGCACCATGGTACC +
Preference number: 4 (lower is better)
Translates to: MVAVRWYKVGVTEDRVLQPVPLS*GWHHGT
Trigger: GGTACCATGGTGCCATCCCCAGGATAGAGGCACAGG...CTGTAGGACTCTGTCCTCAGTCACCCCCACTTTATACCACCTTACTGCAACCAT
53% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000000129.14
ENSMUST00000038080.7
ENSMUST00000233190.2
3UTR CAA 72 bp GAGAACCCCCTAACTCATATGCAGCACCACGAGAGTTaGAATCAGAGAGACCGTGTGTGGCGATGGACTCTG +
Preference number: 4 (lower is better)
Translates to: ENPLTHMQHHES*NQRDRVWRWTL
Trigger: CAGAGTCCATCGCCACACACGGTCTCTCTGATTCAAACTCTCGTGGTGCTGCATATGAGTTAGGGGGTTCTC
53% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000232945.2
CDS-3UTR TCA 90 bp GTTGCAGTAAGGTGGTATAAAGTGGGGGTGACTGAGGACAGAGTCCTACAGGTGAAGCTGGGGAATGTTTaGAAACCCGGTGCCCTCGAA +
Preference number: 4 (lower is better)
Translates to: VAVRWYKVGVTEDRVLQVKLGNV*KPGALE
Trigger: TTCGAGGGCACCGGGTTTTCAAACATTCCCCAGCTT...CACCTGTAGGACTCTGTCCTCAGTCACCCCCACTTTATACCACCTTACTGCAAC
52% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000000129.14
ENSMUST00000038080.7
ENSMUST00000233190.2
CDS-3UTR TCA 90 bp TCCTGTGCTTTTCTCTTTACAGCGGTATCAAATGGCAGGGTTGCTGTGGTTAGCCCTTTGGGATGGGGTTaGGCAGAACCACCCCAGACT +
Preference number: 4 (lower is better)
Translates to: SCAFLFTAVSNGRVAVVSPLGWG*AEPPQT
Trigger: AGTCTGGGGTGGTTCTGCTCAACCCCATCCCAAAGG...GCTAACCACAGCAACCCTGCCATTTGATACCGCTGTAAAGAGAAAAGCACAGGA
52% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 2 transcripts:
ENSMUST00000000129.14
ENSMUST00000233190.2
CDS-3UTR GCA 90 bp ATGGTTGCAGTAAGGTGGTATAAAGTGGGGGTGACTGAGGACAGAGTCCTACAGCTTCAGCAGTTCCTGTaGCTCTATCCTGGGGATGGC +
Preference number: 4 (lower is better)
Translates to: MVAVRWYKVGVTEDRVLQLQQFL*LYPGDG
Trigger: GCCATCCCCAGGATAGAGGCACAGGAACTGCTGAAG...CTGTAGGACTCTGTCCTCAGTCACCCCCACTTTATACCACCTTACTGCAACCAT
52% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000000129.14
ENSMUST00000038080.7
ENSMUST00000233190.2
CDS-3UTR GCA 90 bp GTAAGGTGGTATAAAGTGGGGGTGACTGAGGACAGAGTCCTACAGGTGGCATCCACCAGGAAGTCTCCTTaGTGCTTCAGCAGTTCCTGT +
Preference number: 4 (lower is better)
Translates to: VRWYKVGVTEDRVLQVASTRKSP*CFSSSC
Trigger: ACAGGAACTGCTGAAGCAGCAAGGAGACTTCCTGGT...GGATGCCACCTGTAGGACTCTGTCCTCAGTCACCCCCACTTTATACCACCTTAC
52% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000000129.14
ENSMUST00000038080.7
ENSMUST00000233190.2
CDS-3UTR GCA 90 bp GTAAGGTGGTATAAAGTGGGGGTGACTGAGGACAGAGTCCTACAGGTGGCATCCTCTCGAGATACAACATaGCAGCAGCAACGTCCAAGG +
Preference number: 4 (lower is better)
Translates to: VRWYKVGVTEDRVLQVASSRDTT*QQQRPR
Trigger: CCTTGGACGTTGCTGCTGGCATGTTGTATCTCGAGA...GGATGCCACCTGTAGGACTCTGTCCTCAGTCACCCCCACTTTATACCACCTTAC
52% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000000129.14
ENSMUST00000038080.7
ENSMUST00000233190.2
CDS-3UTR GCA 90 bp GCAGTAAGGTGGTATAAAGTGGGGGTGACTGAGGACAGAGTCCTACAGGTGGCACCAGGTCCCTGTGAATaGAGTTCTTGCTCTCGAGAT +
Preference number: 4 (lower is better)
Translates to: AVRWYKVGVTEDRVLQVAPGPCE*SSCSRD
Trigger: ATCTCGAGAGCAAGAACTGCATTCACAGGGACCTGG...TGCCACCTGTAGGACTCTGTCCTCAGTCACCCCCACTTTATACCACCTTACTGC
52% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000000129.14
ENSMUST00000038080.7
ENSMUST00000233190.2
CDS-3UTR GCA 90 bp GCAGTAAGGTGGTATAAAGTGGGGGTGACTGAGGACAGAGTCCTACAGGTGGCATATCCTCTCTCCACTTaGTCTCGCGCTTGCTGGTTT +
Preference number: 4 (lower is better)
Translates to: AVRWYKVGVTEDRVLQVAYPLST*SRACWF
Trigger: AAACCAGCAAGCGCGAGAGCAAGTGGAGAGAGGATA...TGCCACCTGTAGGACTCTGTCCTCAGTCACCCCCACTTTATACCACCTTACTGC
52% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000000129.14
ENSMUST00000038080.7
ENSMUST00000233190.2
CDS-3UTR CCA 90 bp AGTCCTGTGCTTTTCTCTTTACAGCGGTATCAAATGGCAGGGTTGCTGTGGTTACTGGGGATGGCACCATaGTACCAGTCATGCTCCGCC +
Preference number: 4 (lower is better)
Translates to: SPVLFSLQRYQMAGLLWLLGMAP*YQSCSA
Trigger: GGCGGAGCATGACTGGTACCATGGTGCCATCCCCAG...TAACCACAGCAACCCTGCCATTTGATACCGCTGTAAAGAGAAAAGCACAGGACT
52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000000129.14
ENSMUST00000233190.2
CDS-3UTR CCA 90 bp TCCTGTGCTTTTCTCTTTACAGCGGTATCAAATGGCAGGGTTGCTGTGGTTAGCCCTGTGCCTCTATCCTaGGGATGGCACCATGGTACC +
Preference number: 4 (lower is better)
Translates to: SCAFLFTAVSNGRVAVVSPVPLS*GWHHGT
Trigger: GGTACCATGGTGCCATCCCCAGGATAGAGGCACAGG...GCTAACCACAGCAACCCTGCCATTTGATACCGCTGTAAAGAGAAAAGCACAGGA
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000000129.14
ENSMUST00000233190.2
CDS-3UTR TCA 90 bp TGGCAGAGTGGAGAGCAACTGTGGTGGGCACGTGTCCTGCAAGCATGCGCTACCATCCCAGCAATTGAATaGCGAATAGACTCAAATTTG +
Preference number: 4 (lower is better)
Translates to: WQSGEQLWWARVLQACATIPAIE*RIDSNL
Trigger: CAAATTTGAGTCTATTCGTCATTCAATTGCTGGGAT...GGTAGCGCATGCTTGCAGGACACGTGCCCACCACAGTTGCTCTCCACTCTGCCA
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000000129.14
ENSMUST00000233190.2
CDS-3UTR GCA 90 bp GCAGTAAGGTGGTATAAAGTGGGGGTGACTGAGGACAGAGTCCTACAGGTGGCAGAAAATCTCACCAACTaGTTCAGCTTCAGCTCGTCC +
Preference number: 4 (lower is better)
Translates to: AVRWYKVGVTEDRVLQVAENLTN*FSFSSS
Trigger: GGACGAGCTGAAGCTGAAGCAGTTGGTGAGATTTTC...TGCCACCTGTAGGACTCTGTCCTCAGTCACCCCCACTTTATACCACCTTACTGC
51% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000000129.14
ENSMUST00000038080.7
ENSMUST00000233190.2
CDS-3UTR GCA 90 bp GTTGCAGTAAGGTGGTATAAAGTGGGGGTGACTGAGGACAGAGTCCTACAGGTGTATCCTCTCTCCACTTaGTCTCGCGCTTGCTGGTTT +
Preference number: 4 (lower is better)
Translates to: VAVRWYKVGVTEDRVLQVYPLST*SRACWF
Trigger: AAACCAGCAAGCGCGAGAGCAAGTGGAGAGAGGATA...CACCTGTAGGACTCTGTCCTCAGTCACCCCCACTTTATACCACCTTACTGCAAC
51% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000000129.14
ENSMUST00000038080.7
ENSMUST00000233190.2
CDS-3UTR CCA 90 bp AGCAACTGTGGTGGGCACGTGTCCTGCAAGCATGCGCTACCAAGGCTGTTTATATGTAAAAGCATCTGCTaGGTCTGTGTGAGCTCTTCC +
Preference number: 4 (lower is better)
Translates to: SNCGGHVSCKHALPRLFICKSIC*VCVSSS
Trigger: GGAAGAGCTCACACAGACCCAGCAGATGCTTTTACA...TATAAACAGCCTTGGTAGCGCATGCTTGCAGGACACGTGCCCACCACAGTTGCT
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000000129.14
ENSMUST00000233190.2
CDS-3UTR TCA 90 bp GTTGCAGTAAGGTGGTATAAAGTGGGGGTGACTGAGGACAGAGTCCTACAGGTGACAGTGAGCTCTTTGTaGAGGTCGTTGAACTTAGGG +
Preference number: 4 (lower is better)
Translates to: VAVRWYKVGVTEDRVLQVTVSSL*RSLNLG
Trigger: CCCTAAGTTCAACGACCTTCACAAAGAGCTCACTGT...CACCTGTAGGACTCTGTCCTCAGTCACCCCCACTTTATACCACCTTACTGCAAC
50% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000000129.14
ENSMUST00000038080.7
ENSMUST00000233190.2
CDS-3UTR GCA 90 bp GCAGTAAGGTGGTATAAAGTGGGGGTGACTGAGGACAGAGTCCTACAGGTGGCATTGTGTAAAAGCATCTaGTGGGTCTGTGTGAGCTCT +
Preference number: 4 (lower is better)
Translates to: AVRWYKVGVTEDRVLQVALCKSI*WVCVSS
Trigger: AGAGCTCACACAGACCCAGCAGATGCTTTTACACAA...TGCCACCTGTAGGACTCTGTCCTCAGTCACCCCCACTTTATACCACCTTACTGC
50% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000000129.14
ENSMUST00000233190.2
CDS-3UTR GCA 90 bp GTAAGGTGGTATAAAGTGGGGGTGACTGAGGACAGAGTCCTACAGGTGGCATCCTGTTTGAAAACCCGGTaGCCTCGAATCGATACAGAT +
Preference number: 4 (lower is better)
Translates to: VRWYKVGVTEDRVLQVASCLKTR*PRIDTD
Trigger: ATCTGTATCGATTCGAGGGCACCGGGTTTTCAAACA...GGATGCCACCTGTAGGACTCTGTCCTCAGTCACCCCCACTTTATACCACCTTAC
50% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000000129.14
ENSMUST00000038080.7
ENSMUST00000233190.2
CDS-3UTR CCA 90 bp GCAGTAAGGTGGTATAAAGTGGGGGTGACTGAGGACAGAGTCCTACAGGTGGCATCCGAGTACCGACTTTaGAGACTTAATTATCCCAGC +
Preference number: 4 (lower is better)
Translates to: AVRWYKVGVTEDRVLQVASEYRL*RLNYPS
Trigger: GCTGGGATAATTAAGTCTCCAAAGTCGGTACTCGGA...TGCCACCTGTAGGACTCTGTCCTCAGTCACCCCCACTTTATACCACCTTACTGC
50% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000000129.14
ENSMUST00000038080.7
ENSMUST00000233190.2
CDS-3UTR CCA 90 bp CCTGTGCTTTTCTCTTTACAGCGGTATCAAATGGCAGGGTTGCTGTGGTTAGCTCCTCTATCCTGGGGATaGCACCATGGTACCAGTCAT +
Preference number: 4 (lower is better)
Translates to: PVLFSLQRYQMAGLLWLAPLSWG*HHGTSH
Trigger: ATGACTGGTACCATGGTGCCATCCCCAGGATAGAGG...AGCTAACCACAGCAACCCTGCCATTTGATACCGCTGTAAAGAGAAAAGCACAGG
50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000000129.14
ENSMUST00000233190.2
CDS-3UTR GCA 90 bp GCAGAAGACAGCAGCCCACAGGCTGTGCCTAGAGTAGAAAACCTTGGAGATCACCTCTTCTTCACTTGCTaGTTGTCCTTGATCATCATG +
Preference number: 4 (lower is better)
Translates to: AEDSSPQAVPRVENLGDHLFFTC*LSLIIM
Trigger: CATGATGATCAAGGACAAGCAGCAAGTGAAGAAGAG...GTGATCTCCAAGGTTTTCTACTCTAGGCACAGCCTGTGGGCTGCTGTCTTCTGC
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000000129.14
CDS-3UTR GCA 90 bp GGTGGGCACGTGTCCTGCAAGCATGCGCTACCAAGGCTGTTTATAGCACCAACCCTATCTGTTGATGAATaGCTACATAGCTCTTCTTCA +
Preference number: 4 (lower is better)
Translates to: GGHVSCKHALPRLFIAPTLSVDE*LHSSSS
Trigger: TGAAGAAGAGCTATGTAGGCATTCATCAACAGATAG...GGTTGGTGCTATAAACAGCCTTGGTAGCGCATGCTTGCAGGACACGTGCCCACC
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000000129.14
CDS-3UTR GCA 90 bp ATGGTTGCAGTAAGGTGGTATAAAGTGGGGGTGACTGAGGACAGAGTCCTACAGCTGTGCCCCCTTCAGTaGCAACACATACTGATTATG +
Preference number: 4 (lower is better)
Translates to: MVAVRWYKVGVTEDRVLQLCPLQ*QHILIM
Trigger: CATAATCAGTATGTGTTGGCACTGAAGGGGGCACAG...CTGTAGGACTCTGTCCTCAGTCACCCCCACTTTATACCACCTTACTGCAACCAT
49% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 2 transcripts:
ENSMUST00000000129.14
ENSMUST00000233190.2
CDS-3UTR GCA 90 bp AACCAGAAAACAAACATATTCTGCCAGTTTGTGGCTGTCCATGCTTGTTGCTACGCTCTGATGGAGCTGTaGCCCCTTCAGTGCCAACAC +
Preference number: 4 (lower is better)
Translates to: NQKTNIFCQFVAVHACCYALMEL*PLQCQH
Trigger: GTGTTGGCACTGAAGGGGGCACAGCTCCATCAGAGC...GTAGCAACAAGCATGGACAGCCACAAACTGGCAGAATATGTTTGTTTTCTGGTT
49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000232945.2
CDS-3UTR GCA 90 bp CAAATGGCAGGGTTGCTGTGGTTAGCTAATACGGCTCTGGGTAGGACTATTTATCTGTGCTGCACACTTTaGCTCAGTGCATCGCAACTG +
Preference number: 4 (lower is better)
Translates to: QMAGLLWLANTALGRTIYLCCTL*LSASQL
Trigger: CAGTTGCGATGCACTGAGGCAAAGTGTGCAGCACAG...ATAAATAGTCCTACCCAGAGCCGTATTAGCTAACCACAGCAACCCTGCCATTTG
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000000129.14
ENSMUST00000233190.2
CDS-3UTR GCA 90 bp ATGGTTGCAGTAAGGTGGTATAAAGTGGGGGTGACTGAGGACAGAGTCCTACAGCAAAGCTTTCTGTGCTaGACACTTTGCCTCAGTGCA +
Preference number: 4 (lower is better)
Translates to: MVAVRWYKVGVTEDRVLQQSFLC*TLCLSA
Trigger: TGCACTGAGGCAAAGTGTGCAGCACAGAAAGCTTTG...CTGTAGGACTCTGTCCTCAGTCACCCCCACTTTATACCACCTTACTGCAACCAT
49% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000000129.14
ENSMUST00000233190.2
CDS-3UTR GCA 90 bp GCAGTAAGGTGGTATAAAGTGGGGGTGACTGAGGACAGAGTCCTACAGGTGGCATGTGAATGCAGTTCTTaGTCTCGAGATACAACATGC +
Preference number: 4 (lower is better)
Translates to: AVRWYKVGVTEDRVLQVACECSS*SRDTTC
Trigger: GCATGTTGTATCTCGAGAGCAAGAACTGCATTCACA...TGCCACCTGTAGGACTCTGTCCTCAGTCACCCCCACTTTATACCACCTTACTGC
49% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000000129.14
ENSMUST00000038080.7
ENSMUST00000233190.2
CDS-3UTR GCA 90 bp AGCAACTGTGGTGGGCACGTGTCCTGCAAGCATGCGCTACCAAGGCTGTTTATATGTGAATGCAGTTCTTaGTCTCGAGATACAACATGC +
Preference number: 4 (lower is better)
Translates to: SNCGGHVSCKHALPRLFICECSS*SRDTTC
Trigger: GCATGTTGTATCTCGAGAGCAAGAACTGCATTCACA...TATAAACAGCCTTGGTAGCGCATGCTTGCAGGACACGTGCCCACCACAGTTGCT
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000000129.14
ENSMUST00000233190.2
CDS-3UTR GCA 90 bp TCCTGTGCTTTTCTCTTTACAGCGGTATCAAATGGCAGGGTTGCTGTGGTTAGCTATCCTCTCTCCACTTaGTCTCGCGCTTGCTGGTTT +
Preference number: 4 (lower is better)
Translates to: SCAFLFTAVSNGRVAVVSYPLST*SRACWF
Trigger: AAACCAGCAAGCGCGAGAGCAAGTGGAGAGAGGATA...GCTAACCACAGCAACCCTGCCATTTGATACCGCTGTAAAGAGAAAAGCACAGGA
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000000129.14
ENSMUST00000233190.2
CDS-3UTR CCA 90 bp GTTGCAGTAAGGTGGTATAAAGTGGGGGTGACTGAGGACAGAGTCCTACAGGTGTCCGAGTACCGACTTTaGAGACTTAATTATCCCAGC +
Preference number: 4 (lower is better)
Translates to: VAVRWYKVGVTEDRVLQVSEYRL*RLNYPS
Trigger: GCTGGGATAATTAAGTCTCCAAAGTCGGTACTCGGA...CACCTGTAGGACTCTGTCCTCAGTCACCCCCACTTTATACCACCTTACTGCAAC
49% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000000129.14
ENSMUST00000038080.7
ENSMUST00000233190.2
3UTR CAA 72 bp GTGCTTTTCTCTTTACAGCGGTATCAAATGGCAGGGTaGCTGTGGTTAGCTAATACGGCTCTGGGTAGGACT +
Preference number: 4 (lower is better)
Translates to: VLFSLQRYQMAG*LWLANTALGRT
Trigger: AGTCCTACCCAGAGCCGTATTAGCTAACCACAGCAACCCTGCCATTTGATACCGCTGTAAAGAGAAAAGCAC
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000000129.14
ENSMUST00000233190.2
CDS-3UTR TCA 90 bp TCCTGTGCTTTTCTCTTTACAGCGGTATCAAATGGCAGGGTTGCTGTGGTTAGCACAGTGAGCTCTTTGTaGAGGTCGTTGAACTTAGGG +
Preference number: 4 (lower is better)
Translates to: SCAFLFTAVSNGRVAVVSTVSSL*RSLNLG
Trigger: CCCTAAGTTCAACGACCTTCACAAAGAGCTCACTGT...GCTAACCACAGCAACCCTGCCATTTGATACCGCTGTAAAGAGAAAAGCACAGGA
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000000129.14
ENSMUST00000233190.2
CDS-3UTR GCA 90 bp CAAATGGCAGGGTTGCTGTGGTTAGCTAATACGGCTCTGGGTAGGACTATTTATATCATGGTGAGCCTGTaGAAGGGTCCAGAGTTCAAG +
Preference number: 4 (lower is better)
Translates to: QMAGLLWLANTALGRTIYIMVSL*KGPEFK
Trigger: CTTGAACTCTGGACCCTTGCACAGGCTCACCATGAT...ATAAATAGTCCTACCCAGAGCCGTATTAGCTAACCACAGCAACCCTGCCATTTG
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000000129.14
CDS-3UTR GCA 90 bp CCTGTGCTTTTCTCTTTACAGCGGTATCAAATGGCAGGGTTGCTGTGGTTAGCTTCTTCTTGCATCTTTTaGACGGAGTCCAGCAGCAGA +
Preference number: 4 (lower is better)
Translates to: PVLFSLQRYQMAGLLWLASSCIF*TESSSR
Trigger: TCTGCTGCTGGACTCCGTGCAAAAGATGCAAGAAGA...AGCTAACCACAGCAACCCTGCCATTTGATACCGCTGTAAAGAGAAAAGCACAGG
48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000000129.14
ENSMUST00000233190.2
CDS-3UTR GCA 90 bp TGTGGTGGGCACGTGTCCTGCAAGCATGCGCTACCAAGGCTGTTTATAGCACCAGTCTTCAACATGACTTaGAAACTGTCTGCTGTTAAA +
Preference number: 4 (lower is better)
Translates to: CGGHVSCKHALPRLFIAPVFNMT*KLSAVK
Trigger: TTTAACAGCAGACAGTTTGCAAGTCATGTTGAAGAC...TGGTGCTATAAACAGCCTTGGTAGCGCATGCTTGCAGGACACGTGCCCACCACA
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000000129.14
ENSMUST00000233190.2
CDS-3UTR GCA 90 bp TGGCCTTTACCATTAGTCCTGTGCTTTTCTCTTTACAGCGGTATCAAATGGCAGCTGTGCTGCACACTTTaGCTCAGTGCATCGCAACTG +
Preference number: 4 (lower is better)
Translates to: WPLPLVLCFSLYSGIKWQLCCTL*LSASQL
Trigger: CAGTTGCGATGCACTGAGGCAAAGTGTGCAGCACAG...CTGCCATTTGATACCGCTGTAAAGAGAAAAGCACAGGACTAATGGTAAAGGCCA
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000000129.14
ENSMUST00000233190.2
CDS-3UTR GCA 90 bp CCTGTGCTTTTCTCTTTACAGCGGTATCAAATGGCAGGGTTGCTGTGGTTAGCTCAAAGCTTTCTGTGCTaGACACTTTGCCTCAGTGCA +
Preference number: 4 (lower is better)
Translates to: PVLFSLQRYQMAGLLWLAQSFLC*TLCLSA
Trigger: TGCACTGAGGCAAAGTGTGCAGCACAGAAAGCTTTG...AGCTAACCACAGCAACCCTGCCATTTGATACCGCTGTAAAGAGAAAAGCACAGG
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000000129.14
ENSMUST00000233190.2
CDS-3UTR GCA 90 bp TGTGGTGGGCACGTGTCCTGCAAGCATGCGCTACCAAGGCTGTTTATAGCACCATTTTCCTGTACTTTTTaGTCCAGCAAAGCTTTCTGT +
Preference number: 4 (lower is better)
Translates to: CGGHVSCKHALPRLFIAPFSCTF*SSKAFC
Trigger: ACAGAAAGCTTTGCTGGAGCAAAAAGTACAGGAAAA...TGGTGCTATAAACAGCCTTGGTAGCGCATGCTTGCAGGACACGTGCCCACCACA
48% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000000129.14
ENSMUST00000233190.2
CDS-3UTR GCA 90 bp CAAATGGCAGGGTTGCTGTGGTTAGCTAATACGGCTCTGGGTAGGACTATTTATTCTCGAGATACAACATaGCAGCAGCAACGTCCAAGG +
Preference number: 4 (lower is better)
Translates to: QMAGLLWLANTALGRTIYSRDTT*QQQRPR
Trigger: CCTTGGACGTTGCTGCTGGCATGTTGTATCTCGAGA...ATAAATAGTCCTACCCAGAGCCGTATTAGCTAACCACAGCAACCCTGCCATTTG
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000000129.14
ENSMUST00000233190.2
CDS-3UTR CCA 90 bp TCCTGTGCTTTTCTCTTTACAGCGGTATCAAATGGCAGGGTTGCTGTGGTTAGCTGTCATAGCGCTCCTTaGCCTTTTCTGTTTCCTTCC +
Preference number: 4 (lower is better)
Translates to: SCAFLFTAVSNGRVAVVSCHSAP*PFLFPS
Trigger: GGAAGGAAACAGAAAAGGCCAAGGAGCGCTATGACA...GCTAACCACAGCAACCCTGCCATTTGATACCGCTGTAAAGAGAAAAGCACAGGA
48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000000129.14
ENSMUST00000233190.2
CDS-3UTR CCA 90 bp ATGGTTGCAGTAAGGTGGTATAAAGTGGGGGTGACTGAGGACAGAGTCCTACAGTCAAGTGCCTGTTTTTaGCCCAGAAGAAGCACAATG +
Preference number: 4 (lower is better)
Translates to: MVAVRWYKVGVTEDRVLQSSACF*PRRSTM
Trigger: CATTGTGCTTCTTCTGGGCCAAAAACAGGCACTTGA...CTGTAGGACTCTGTCCTCAGTCACCCCCACTTTATACCACCTTACTGCAACCAT
48% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 2 transcripts:
ENSMUST00000000129.14
ENSMUST00000233190.2
CDS-3UTR CCA 90 bp ATGGTTGCAGTAAGGTGGTATAAAGTGGGGGTGACTGAGGACAGAGTCCTACAGTCCGAGTACCGACTTTaGAGACTTAATTATCCCAGC +
Preference number: 4 (lower is better)
Translates to: MVAVRWYKVGVTEDRVLQSEYRL*RLNYPS
Trigger: GCTGGGATAATTAAGTCTCCAAAGTCGGTACTCGGA...CTGTAGGACTCTGTCCTCAGTCACCCCCACTTTATACCACCTTACTGCAACCAT
48% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000000129.14
ENSMUST00000038080.7
ENSMUST00000233190.2
CDS-3UTR CCA 90 bp AAACCAGAAAACAAACATATTCTGCCAGTTTGTGGCTGTCCATGCTTGTTGCTACCTGTGCCTCTATCCTaGGGATGGCACCATGGTACC +
Preference number: 4 (lower is better)
Translates to: KPENKHILPVCGCPCLLLPVPLS*GWHHGT
Trigger: GGTACCATGGTGCCATCCCCAGGATAGAGGCACAGG...TAGCAACAAGCATGGACAGCCACAAACTGGCAGAATATGTTTGTTTTCTGGTTT
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000232945.2
CDS-3UTR CCA 90 bp ATGGTTGCAGTAAGGTGGTATAAAGTGGGGGTGACTGAGGACAGAGTCCTACAGCAGAAAATCACCCCCTaGGACCAGTTCCATAATGAT +
Preference number: 4 (lower is better)
Translates to: MVAVRWYKVGVTEDRVLQQKITP*DQFHND
Trigger: ATCATTATGGAACTGGTCCCAGGGGGTGATTTTCTG...CTGTAGGACTCTGTCCTCAGTCACCCCCACTTTATACCACCTTACTGCAACCAT
48% GC, longest homopolymer 5 nt, total homopolymer stretches 14 nt.
Matches the following 3 transcripts:
ENSMUST00000000129.14
ENSMUST00000038080.7
ENSMUST00000233190.2
CDS-3UTR TCA 90 bp GCAGTAAGGTGGTATAAAGTGGGGGTGACTGAGGACAGAGTCCTACAGGTGGCAATCCCAGCAATTGAATaGCGAATAGACTCAAATTTG +
Preference number: 4 (lower is better)
Translates to: AVRWYKVGVTEDRVLQVAIPAIE*RIDSNL
Trigger: CAAATTTGAGTCTATTCGTCATTCAATTGCTGGGAT...TGCCACCTGTAGGACTCTGTCCTCAGTCACCCCCACTTTATACCACCTTACTGC
47% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000000129.14
ENSMUST00000038080.7
ENSMUST00000233190.2
CDS-3UTR TCA 90 bp AACCAGAAAACAAACATATTCTGCCAGTTTGTGGCTGTCCATGCTTGTTGCTACAAGCTGGGGAATGTTTaGAAACCCGGTGCCCTCGAA +
Preference number: 4 (lower is better)
Translates to: NQKTNIFCQFVAVHACCYKLGNV*KPGALE
Trigger: TTCGAGGGCACCGGGTTTTCAAACATTCCCCAGCTT...GTAGCAACAAGCATGGACAGCCACAAACTGGCAGAATATGTTTGTTTTCTGGTT
47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000232945.2
CDS-3UTR GCA 90 bp TTGCTGTGGTTAGCTAATACGGCTCTGGGTAGGACTATTTATTTCTTGAATAGAGCTCTGATGGAGCTGTaGCCCCTTCAGTGCCAACAC +
Preference number: 4 (lower is better)
Translates to: LLWLANTALGRTIYFLNRALMEL*PLQCQH
Trigger: GTGTTGGCACTGAAGGGGGCACAGCTCCATCAGAGC...TCTATTCAAGAAATAAATAGTCCTACCCAGAGCCGTATTAGCTAACCACAGCAA
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000000129.14
ENSMUST00000233190.2
CDS-3UTR GCA 90 bp AGTCCTGTGCTTTTCTCTTTACAGCGGTATCAAATGGCAGGGTTGCTGTGGTTATCTTCTTGCATCTTTTaGACGGAGTCCAGCAGCAGA +
Preference number: 4 (lower is better)
Translates to: SPVLFSLQRYQMAGLLWLSSCIF*TESSSR
Trigger: TCTGCTGCTGGACTCCGTGCAAAAGATGCAAGAAGA...TAACCACAGCAACCCTGCCATTTGATACCGCTGTAAAGAGAAAAGCACAGGACT
47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000000129.14
ENSMUST00000233190.2
CDS-3UTR GCA 90 bp GCAGAAGACAGCAGCCCACAGGCTGTGCCTAGAGTAGAAAACCTTGGAGATCACGTCTTCAACATGACTTaGAAACTGTCTGCTGTTAAA +
Preference number: 4 (lower is better)
Translates to: AEDSSPQAVPRVENLGDHVFNMT*KLSAVK
Trigger: TTTAACAGCAGACAGTTTGCAAGTCATGTTGAAGAC...GTGATCTCCAAGGTTTTCTACTCTAGGCACAGCCTGTGGGCTGCTGTCTTCTGC
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000000129.14
ENSMUST00000233190.2
CDS-3UTR GCA 90 bp AGAAAACAAACATATTCTGCCAGTTTGTGGCTGTCCATGCTTGTTGCTACAAGTCTTCAGCAGTTCCTGTaGCTCTATCCTGGGGATGGC +
Preference number: 4 (lower is better)
Translates to: RKQTYSASLWLSMLVATSLQQFL*LYPGDG
Trigger: GCCATCCCCAGGATAGAGGCACAGGAACTGCTGAAG...ACTTGTAGCAACAAGCATGGACAGCCACAAACTGGCAGAATATGTTTGTTTTCT
47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000232945.2
CDS-3UTR GCA 90 bp GCAGAAGACAGCAGCCCACAGGCTGTGCCTAGAGTAGAAAACCTTGGAGATCACAATTGTATGATAAAGTaGCTCCTTTGTCCGTCAGAA +
Preference number: 4 (lower is better)
Translates to: AEDSSPQAVPRVENLGDHNCMIK*LLCPSE
Trigger: TTCTGACGGACAAAGGAGGCACTTTATCATACAATT...GTGATCTCCAAGGTTTTCTACTCTAGGCACAGCCTGTGGGCTGCTGTCTTCTGC
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000000129.14
ENSMUST00000233190.2
CDS-3UTR GCA 90 bp GTAAGGTGGTATAAAGTGGGGGTGACTGAGGACAGAGTCCTACAGGTGGCATCCAATTGTATGATAAAGTaGCTCCTTTGTCCGTCAGAA +
Preference number: 4 (lower is better)
Translates to: VRWYKVGVTEDRVLQVASNCMIK*LLCPSE
Trigger: TTCTGACGGACAAAGGAGGCACTTTATCATACAATT...GGATGCCACCTGTAGGACTCTGTCCTCAGTCACCCCCACTTTATACCACCTTAC
47% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000000129.14
ENSMUST00000038080.7
ENSMUST00000233190.2
CDS-3UTR GCA 90 bp AGCAACTGTGGTGGGCACGTGTCCTGCAAGCATGCGCTACCAAGGCTGTTTATAAATTGTATGATAAAGTaGCTCCTTTGTCCGTCAGAA +
Preference number: 4 (lower is better)
Translates to: SNCGGHVSCKHALPRLFINCMIK*LLCPSE
Trigger: TTCTGACGGACAAAGGAGGCACTTTATCATACAATT...TATAAACAGCCTTGGTAGCGCATGCTTGCAGGACACGTGCCCACCACAGTTGCT
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000000129.14
ENSMUST00000233190.2
CDS-3UTR GCA 90 bp CAAATGGCAGGGTTGCTGTGGTTAGCTAATACGGCTCTGGGTAGGACTATTTATGAAAATCTCACCAACTaGTTCAGCTTCAGCTCGTCC +
Preference number: 4 (lower is better)
Translates to: QMAGLLWLANTALGRTIYENLTN*FSFSSS
Trigger: GGACGAGCTGAAGCTGAAGCAGTTGGTGAGATTTTC...ATAAATAGTCCTACCCAGAGCCGTATTAGCTAACCACAGCAACCCTGCCATTTG
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000000129.14
ENSMUST00000233190.2
CDS-3UTR GCA 90 bp GGCCTTTTTCTTTGGCCTTTACCATTAGTCCTGTGCTTTTCTCTTTACAGCGGTTCTCGAGATACAACATaGCAGCAGCAACGTCCAAGG +
Preference number: 4 (lower is better)
Translates to: GLFLWPLPLVLCFSLYSGSRDTT*QQQRPR
Trigger: CCTTGGACGTTGCTGCTGGCATGTTGTATCTCGAGA...ACCGCTGTAAAGAGAAAAGCACAGGACTAATGGTAAAGGCCAAAGAAAAAGGCC
47% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000000129.14
ENSMUST00000233190.2
CDS-3UTR GCA 90 bp ATGGTTGCAGTAAGGTGGTATAAAGTGGGGGTGACTGAGGACAGAGTCCTACAGTGTGAATGCAGTTCTTaGTCTCGAGATACAACATGC +
Preference number: 4 (lower is better)
Translates to: MVAVRWYKVGVTEDRVLQCECSS*SRDTTC
Trigger: GCATGTTGTATCTCGAGAGCAAGAACTGCATTCACA...CTGTAGGACTCTGTCCTCAGTCACCCCCACTTTATACCACCTTACTGCAACCAT
47% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000000129.14
ENSMUST00000038080.7
ENSMUST00000233190.2
CDS-3UTR GCA 90 bp TGGCCTTTACCATTAGTCCTGTGCTTTTCTCTTTACAGCGGTATCAAATGGCAGCCAGGTCCCTGTGAATaGAGTTCTTGCTCTCGAGAT +
Preference number: 4 (lower is better)
Translates to: WPLPLVLCFSLYSGIKWQPGPCE*SSCSRD
Trigger: ATCTCGAGAGCAAGAACTGCATTCACAGGGACCTGG...CTGCCATTTGATACCGCTGTAAAGAGAAAAGCACAGGACTAATGGTAAAGGCCA
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000000129.14
ENSMUST00000233190.2
CDS-3UTR CCA 90 bp CAAATGGCAGGGTTGCTGTGGTTAGCTAATACGGCTCTGGGTAGGACTATTTATGTGCATCGCAACTGCTaGACTGACTGTTTCAACTCT +
Preference number: 4 (lower is better)
Translates to: QMAGLLWLANTALGRTIYVHRNC*TDCFNS
Trigger: AGAGTTGAAACAGTCAGTCCAGCAGTTGCGATGCAC...ATAAATAGTCCTACCCAGAGCCGTATTAGCTAACCACAGCAACCCTGCCATTTG
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000000129.14
ENSMUST00000233190.2
CDS-3UTR TCA 90 bp CTATGCTCTTTCATACACCGATCTTGCCAAAATATAATGCACCTAACAGATACACCTTTGGGATGGGGTTaGGCAGAACCACCCCAGACT +
Preference number: 4 (lower is better)
Translates to: LCSFIHRSCQNIMHLTDTPLGWG*AEPPQT
Trigger: AGTCTGGGGTGGTTCTGCTCAACCCCATCCCAAAGG...TGTATCTGTTAGGTGCATTATATTTTGGCAAGATCGGTGTATGAAAGAGCATAG
46% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 1 transcripts:
ENSMUST00000232945.2
CDS-3UTR TCA 90 bp ATGGTTGCAGTAAGGTGGTATAAAGTGGGGGTGACTGAGGACAGAGTCCTACAGACACGCCTATCAGTTTaGCAATATTGGGATGATCAT +
Preference number: 4 (lower is better)
Translates to: MVAVRWYKVGVTEDRVLQTRLSV*QYWDDH
Trigger: ATGATCATCCCAATATTGTCAAACTGATAGGCGTGT...CTGTAGGACTCTGTCCTCAGTCACCCCCACTTTATACCACCTTACTGCAACCAT
46% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000000129.14
ENSMUST00000038080.7
ENSMUST00000233190.2
CDS-3UTR GCA 90 bp AGTCCTGTGCTTTTCTCTTTACAGCGGTATCAAATGGCAGGGTTGCTGTGGTTATTGTGTAAAAGCATCTaGTGGGTCTGTGTGAGCTCT +
Preference number: 4 (lower is better)
Translates to: SPVLFSLQRYQMAGLLWLLCKSI*WVCVSS
Trigger: AGAGCTCACACAGACCCAGCAGATGCTTTTACACAA...TAACCACAGCAACCCTGCCATTTGATACCGCTGTAAAGAGAAAAGCACAGGACT
46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000000129.14
ENSMUST00000233190.2
CDS-3UTR GCA 90 bp AAACCAGAAAACAAACATATTCTGCCAGTTTGTGGCTGTCCATGCTTGTTGCTACTGTGCTGCACACTTTaGCTCAGTGCATCGCAACTG +
Preference number: 4 (lower is better)
Translates to: KPENKHILPVCGCPCLLLLCCTL*LSASQL
Trigger: CAGTTGCGATGCACTGAGGCAAAGTGTGCAGCACAG...TAGCAACAAGCATGGACAGCCACAAACTGGCAGAATATGTTTGTTTTCTGGTTT
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000232945.2
CDS-3UTR GCA 90 bp GGCCTTTTTCTTTGGCCTTTACCATTAGTCCTGTGCTTTTCTCTTTACAGCGGTCAGCAAAGCTTTCTGTaGTGCACACTTTGCCTCAGT +
Preference number: 4 (lower is better)
Translates to: GLFLWPLPLVLCFSLYSGQQSFL*CTLCLS
Trigger: ACTGAGGCAAAGTGTGCAGCACAGAAAGCTTTGCTG...ACCGCTGTAAAGAGAAAAGCACAGGACTAATGGTAAAGGCCAAAGAAAAAGGCC
46% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000000129.14
ENSMUST00000233190.2
CDS-3UTR GCA 90 bp AACCAGAAAACAAACATATTCTGCCAGTTTGTGGCTGTCCATGCTTGTTGCTACACCAGGAAGTCTCCTTaGTGCTTCAGCAGTTCCTGT +
Preference number: 4 (lower is better)
Translates to: NQKTNIFCQFVAVHACCYTRKSP*CFSSSC
Trigger: ACAGGAACTGCTGAAGCAGCAAGGAGACTTCCTGGT...GTAGCAACAAGCATGGACAGCCACAAACTGGCAGAATATGTTTGTTTTCTGGTT
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000232945.2
CDS-3UTR GCA 90 bp AGTCCTGTGCTTTTCTCTTTACAGCGGTATCAAATGGCAGGGTTGCTGTGGTTATGTTTGAAAACCCGGTaGCCTCGAATCGATACAGAT +
Preference number: 4 (lower is better)
Translates to: SPVLFSLQRYQMAGLLWLCLKTR*PRIDTD
Trigger: ATCTGTATCGATTCGAGGGCACCGGGTTTTCAAACA...TAACCACAGCAACCCTGCCATTTGATACCGCTGTAAAGAGAAAAGCACAGGACT
46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000000129.14
ENSMUST00000233190.2
CDS-3UTR GCA 90 bp GCAGAAGACAGCAGCCCACAGGCTGTGCCTAGAGTAGAAAACCTTGGAGATCACTTTTATCCTTTAGTGTaGCCTTATACACTTCACCAA +
Preference number: 4 (lower is better)
Translates to: AEDSSPQAVPRVENLGDHFYPLV*PYTLHQ
Trigger: TTGGTGAAGTGTATAAGGGCACACTAAAGGATAAAA...GTGATCTCCAAGGTTTTCTACTCTAGGCACAGCCTGTGGGCTGCTGTCTTCTGC
46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000000129.14
ENSMUST00000233190.2
CDS-3UTR CCA 90 bp TGGCCTTTACCATTAGTCCTGTGCTTTTCTCTTTACAGCGGTATCAAATGGCAGTGTAAAAGCATCTGCTaGGTCTGTGTGAGCTCTTCC +
Preference number: 4 (lower is better)
Translates to: WPLPLVLCFSLYSGIKWQCKSIC*VCVSSS
Trigger: GGAAGAGCTCACACAGACCCAGCAGATGCTTTTACA...CTGCCATTTGATACCGCTGTAAAGAGAAAAGCACAGGACTAATGGTAAAGGCCA
46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000000129.14
ENSMUST00000233190.2
CDS-3UTR CCA 90 bp CACCGTTTTTACTCCAAGAATTTTAATTACAGCCACAAATACTTTCCGTATTCCCTGGGGATGGCACCATaGTACCAGTCATGCTCCGCC +
Preference number: 4 (lower is better)
Translates to: HRFYSKNFNYSHKYFPYSLGMAP*YQSCSA
Trigger: GGCGGAGCATGACTGGTACCATGGTGCCATCCCCAG...GGAATACGGAAAGTATTTGTGGCTGTAATTAAAATTCTTGGAGTAAAAACGGTG
46% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 1 transcripts:
ENSMUST00000232945.2
CDS-3UTR TCA 90 bp AGTCCTGTGCTTTTCTCTTTACAGCGGTATCAAATGGCAGGGTTGCTGTGGTTACTAAAGTCTTCAACATaGCTTGCAAACTGTCTGCTG +
Preference number: 4 (lower is better)
Translates to: SPVLFSLQRYQMAGLLWLLKSST*LANCLL
Trigger: CAGCAGACAGTTTGCAAGTCATGTTGAAGACTTTAG...TAACCACAGCAACCCTGCCATTTGATACCGCTGTAAAGAGAAAAGCACAGGACT
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000000129.14
ENSMUST00000233190.2
CDS-3UTR TCA 90 bp CCTGTGCTTTTCTCTTTACAGCGGTATCAAATGGCAGGGTTGCTGTGGTTAGCTACACGCCTATCAGTTTaGCAATATTGGGATGATCAT +
Preference number: 4 (lower is better)
Translates to: PVLFSLQRYQMAGLLWLATRLSV*QYWDDH
Trigger: ATGATCATCCCAATATTGTCAAACTGATAGGCGTGT...AGCTAACCACAGCAACCCTGCCATTTGATACCGCTGTAAAGAGAAAAGCACAGG
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000000129.14
ENSMUST00000233190.2
CDS-3UTR GCA 90 bp AACCAGAAAACAAACATATTCTGCCAGTTTGTGGCTGTCCATGCTTGTTGCTACCTGTGCCCCCTTCAGTaGCAACACATACTGATTATG +
Preference number: 4 (lower is better)
Translates to: NQKTNIFCQFVAVHACCYLCPLQ*QHILIM
Trigger: CATAATCAGTATGTGTTGGCACTGAAGGGGGCACAG...GTAGCAACAAGCATGGACAGCCACAAACTGGCAGAATATGTTTGTTTTCTGGTT
44% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000232945.2
CDS-3UTR GCA 90 bp GTTGCAGTAAGGTGGTATAAAGTGGGGGTGACTGAGGACAGAGTCCTACAGGTGTTTTATCCTTTAGTGTaGCCTTATACACTTCACCAA +
Preference number: 4 (lower is better)
Translates to: VAVRWYKVGVTEDRVLQVFYPLV*PYTLHQ
Trigger: TTGGTGAAGTGTATAAGGGCACACTAAAGGATAAAA...CACCTGTAGGACTCTGTCCTCAGTCACCCCCACTTTATACCACCTTACTGCAAC
44% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000000129.14
ENSMUST00000038080.7
ENSMUST00000233190.2
CDS-3UTR CCA 90 bp AACCAGAAAACAAACATATTCTGCCAGTTTGTGGCTGTCCATGCTTGTTGCTACGCAGCAGAGGAAGTGTaGTATCATAGTACTGGCTCT +
Preference number: 4 (lower is better)
Translates to: NQKTNIFCQFVAVHACCYAAEEV*YHSTGS
Trigger: AGAGCCAGTACTATGATACCACACTTCCTCTGCTGC...GTAGCAACAAGCATGGACAGCCACAAACTGGCAGAATATGTTTGTTTTCTGGTT
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000232945.2
CDS-3UTR CCA 90 bp AACCAGAAAACAAACATATTCTGCCAGTTTGTGGCTGTCCATGCTTGTTGCTACGTGCATCGCAACTGCTaGACTGACTGTTTCAACTCT +
Preference number: 4 (lower is better)
Translates to: NQKTNIFCQFVAVHACCYVHRNC*TDCFNS
Trigger: AGAGTTGAAACAGTCAGTCCAGCAGTTGCGATGCAC...GTAGCAACAAGCATGGACAGCCACAAACTGGCAGAATATGTTTGTTTTCTGGTT
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000232945.2
CDS-3UTR CCA 90 bp CACCGTTTTTACTCCAAGAATTTTAATTACAGCCACAAATACTTTCCGTATTCCTCACCAGGTTTCCCATaGCTCTCCCGCACCAGGAAG +
Preference number: 4 (lower is better)
Translates to: HRFYSKNFNYSHKYFPYSSPGFP*LSRTRK
Trigger: CTTCCTGGTGCGGGAGAGCCATGGGAAACCTGGTGA...GGAATACGGAAAGTATTTGTGGCTGTAATTAAAATTCTTGGAGTAAAAACGGTG
44% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000232945.2
CDS-3UTR GCA 90 bp AACCAGAAAACAAACATATTCTGCCAGTTTGTGGCTGTCCATGCTTGTTGCTACCGTAGTTCCCAGTCTTaGAACTTTAACACAGCTTCC +
Preference number: 4 (lower is better)
Translates to: NQKTNIFCQFVAVHACCYRSSQS*NFNTAS
Trigger: GGAAGCTGTGTTAAAGTTGCAAGACTGGGAACTACG...GTAGCAACAAGCATGGACAGCCACAAACTGGCAGAATATGTTTGTTTTCTGGTT
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000232945.2
CDS-3UTR GCA 90 bp CTAGAGTACTTTGGGAGCAACCAAACTAGTGTGGTAAAACAGGATGCTAATCCGCTCTTCTTCACTTGCTaGTTGTCCTTGATCATCATG +
Preference number: 4 (lower is better)
Translates to: LEYFGSNQTSVVKQDANPLFFTC*LSLIIM
Trigger: CATGATGATCAAGGACAAGCAGCAAGTGAAGAAGAG...CGGATTAGCATCCTGTTTTACCACACTAGTTTGGTTGCTCCCAAAGTACTCTAG
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000232945.2
CDS-3UTR GCA 90 bp AACCAGAAAACAAACATATTCTGCCAGTTTGTGGCTGTCCATGCTTGTTGCTACTTGTGTAAAAGCATCTaGTGGGTCTGTGTGAGCTCT +
Preference number: 4 (lower is better)
Translates to: NQKTNIFCQFVAVHACCYLCKSI*WVCVSS
Trigger: AGAGCTCACACAGACCCAGCAGATGCTTTTACACAA...GTAGCAACAAGCATGGACAGCCACAAACTGGCAGAATATGTTTGTTTTCTGGTT
43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000232945.2
CDS-3UTR GCA 90 bp GCAAGGAACCTACAACACCGTTTTTACTCCAAGAATTTTAATTACAGCCACAAACACACTTTGCCTCAGTaGATCGCAACTGCTGGACTG +
Preference number: 4 (lower is better)
Translates to: ARNLQHRFYSKNFNYSHKHTLPQ*IATAGL
Trigger: CAGTCCAGCAGTTGCGATGCACTGAGGCAAAGTGTG...TTTGTGGCTGTAATTAAAATTCTTGGAGTAAAAACGGTGTTGTAGGTTCCTTGC
43% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000232945.2
CDS-3UTR GCA 90 bp AGAAAACAAACATATTCTGCCAGTTTGTGGCTGTCCATGCTTGTTGCTACAAGTCAAAGCTTTCTGTGCTaGACACTTTGCCTCAGTGCA +
Preference number: 4 (lower is better)
Translates to: RKQTYSASLWLSMLVATSQSFLC*TLCLSA
Trigger: TGCACTGAGGCAAAGTGTGCAGCACAGAAAGCTTTG...ACTTGTAGCAACAAGCATGGACAGCCACAAACTGGCAGAATATGTTTGTTTTCT
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000232945.2
CDS-3UTR GCA 90 bp TTTTCTTTGGCCTTTACCATTAGTCCTGTGCTTTTCTCTTTACAGCGGTATCAAACCAGGAAGTCTCCTTaGTGCTTCAGCAGTTCCTGT +
Preference number: 4 (lower is better)
Translates to: FSLAFTISPVLFSLQRYQTRKSP*CFSSSC
Trigger: ACAGGAACTGCTGAAGCAGCAAGGAGACTTCCTGGT...TTGATACCGCTGTAAAGAGAAAAGCACAGGACTAATGGTAAAGGCCAAAGAAAA
43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000000129.14
ENSMUST00000233190.2
CDS-3UTR CCA 90 bp TGGCCTTTACCATTAGTCCTGTGCTTTTCTCTTTACAGCGGTATCAAATGGCAGATTCACCACAGGAGGTaGTTCTTTCCCATCATTTTC +
Preference number: 4 (lower is better)
Translates to: WPLPLVLCFSLYSGIKWQIHHRR*FFPIIF
Trigger: GAAAATGATGGGAAAGAACCACCTCCTGTGGTGAAT...CTGCCATTTGATACCGCTGTAAAGAGAAAAGCACAGGACTAATGGTAAAGGCCA
43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000000129.14
ENSMUST00000233190.2
CDS-3UTR CCA 90 bp AACCAGAAAACAAACATATTCTGCCAGTTTGTGGCTGTCCATGCTTGTTGCTACTCCGAGTACCGACTTTaGAGACTTAATTATCCCAGC +
Preference number: 4 (lower is better)
Translates to: NQKTNIFCQFVAVHACCYSEYRL*RLNYPS
Trigger: GCTGGGATAATTAAGTCTCCAAAGTCGGTACTCGGA...GTAGCAACAAGCATGGACAGCCACAAACTGGCAGAATATGTTTGTTTTCTGGTT
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000232945.2
CDS-3UTR CCA 90 bp GCAAGGAACCTACAACACCGTTTTTACTCCAAGAATTTTAATTACAGCCACAAACCTCTATCCTGGGGATaGCACCATGGTACCAGTCAT +
Preference number: 4 (lower is better)
Translates to: ARNLQHRFYSKNFNYSHKPLSWG*HHGTSH
Trigger: ATGACTGGTACCATGGTGCCATCCCCAGGATAGAGG...TTTGTGGCTGTAATTAAAATTCTTGGAGTAAAAACGGTGTTGTAGGTTCCTTGC
43% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 1 transcripts:
ENSMUST00000232945.2
CDS-3UTR GCA 90 bp CTAGAGTACTTTGGGAGCAACCAAACTAGTGTGGTAAAACAGGATGCTAATCCGAGAGTTCAAGTCCTCTaGATGTGTCTTCATTATCCT +
Preference number: 4 (lower is better)
Translates to: LEYFGSNQTSVVKQDANPRVQVL*MCLHYP
Trigger: AGGATAATGAAGACACATGCAGAGGACTTGAACTCT...CGGATTAGCATCCTGTTTTACCACACTAGTTTGGTTGCTCCCAAAGTACTCTAG
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000232945.2
CDS-3UTR GCA 90 bp CAAATGGCAGGGTTGCTGTGGTTAGCTAATACGGCTCTGGGTAGGACTATTTATTTTTCCTGTACTTTTTaGTCCAGCAAAGCTTTCTGT +
Preference number: 4 (lower is better)
Translates to: QMAGLLWLANTALGRTIYFSCTF*SSKAFC
Trigger: ACAGAAAGCTTTGCTGGAGCAAAAAGTACAGGAAAA...ATAAATAGTCCTACCCAGAGCCGTATTAGCTAACCACAGCAACCCTGCCATTTG
42% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 2 transcripts:
ENSMUST00000000129.14
ENSMUST00000233190.2
3UTR CAA 72 bp CCAATGGACCTAGGTATTAAAGGCAGGCCTTTTTCTTaGGCCTTTACCATTAGTCCTGTGCTTTTCTCTTTA +
Preference number: 4 (lower is better)
Translates to: PMDLGIKGRPFS*AFTISPVLFSL
Trigger: TAAAGAGAAAAGCACAGGACTAATGGTAAAGGCCAAAGAAAAAGGCCTGCCTTTAATACCTAGGTCCATTGG
42% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000000129.14
ENSMUST00000233190.2
CDS-3UTR TCA 90 bp AGAAAACAAACATATTCTGCCAGTTTGTGGCTGTCCATGCTTGTTGCTACAAGTCTAAAGTCTTCAACATaGCTTGCAAACTGTCTGCTG +
Preference number: 4 (lower is better)
Translates to: RKQTYSASLWLSMLVATSLKSST*LANCLL
Trigger: CAGCAGACAGTTTGCAAGTCATGTTGAAGACTTTAG...ACTTGTAGCAACAAGCATGGACAGCCACAAACTGGCAGAATATGTTTGTTTTCT
41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000232945.2
CDS-3UTR CCA 90 bp TTGCTGTGGTTAGCTAATACGGCTCTGGGTAGGACTATTTATTTCTTGAATAGACAGAAAATCACCCCCTaGGACCAGTTCCATAATGAT +
Preference number: 4 (lower is better)
Translates to: LLWLANTALGRTIYFLNRQKITP*DQFHND
Trigger: ATCATTATGGAACTGGTCCCAGGGGGTGATTTTCTG...TCTATTCAAGAAATAAATAGTCCTACCCAGAGCCGTATTAGCTAACCACAGCAA
41% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000000129.14
ENSMUST00000233190.2
CDS-3UTR TCA 90 bp TTTTCTTTGGCCTTTACCATTAGTCCTGTGCTTTTCTCTTTACAGCGGTATCAACTAAAGTCTTCAACATaGCTTGCAAACTGTCTGCTG +
Preference number: 4 (lower is better)
Translates to: FSLAFTISPVLFSLQRYQLKSST*LANCLL
Trigger: CAGCAGACAGTTTGCAAGTCATGTTGAAGACTTTAG...TTGATACCGCTGTAAAGAGAAAAGCACAGGACTAATGGTAAAGGCCAAAGAAAA
40% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000000129.14
ENSMUST00000233190.2
CDS-3UTR GCA 90 bp CACCGTTTTTACTCCAAGAATTTTAATTACAGCCACAAATACTTTCCGTATTCCTCTTCTTGCATCTTTTaGACGGAGTCCAGCAGCAGA +
Preference number: 4 (lower is better)
Translates to: HRFYSKNFNYSHKYFPYSSSCIF*TESSSR
Trigger: TCTGCTGCTGGACTCCGTGCAAAAGATGCAAGAAGA...GGAATACGGAAAGTATTTGTGGCTGTAATTAAAATTCTTGGAGTAAAAACGGTG
40% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 1 transcripts:
ENSMUST00000232945.2
CDS-3UTR GCA 90 bp CACCGTTTTTACTCCAAGAATTTTAATTACAGCCACAAATACTTTCCGTATTCCCAGCAAAGCTTTCTGTaGTGCACACTTTGCCTCAGT +
Preference number: 4 (lower is better)
Translates to: HRFYSKNFNYSHKYFPYSQQSFL*CTLCLS
Trigger: ACTGAGGCAAAGTGTGCAGCACAGAAAGCTTTGCTG...GGAATACGGAAAGTATTTGTGGCTGTAATTAAAATTCTTGGAGTAAAAACGGTG
40% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000232945.2
CDS-3UTR CCA 90 bp CACCGTTTTTACTCCAAGAATTTTAATTACAGCCACAAATACTTTCCGTATTCCTGTCATAGCGCTCCTTaGCCTTTTCTGTTTCCTTCC +
Preference number: 4 (lower is better)
Translates to: HRFYSKNFNYSHKYFPYSCHSAP*PFLFPS
Trigger: GGAAGGAAACAGAAAAGGCCAAGGAGCGCTATGACA...GGAATACGGAAAGTATTTGTGGCTGTAATTAAAATTCTTGGAGTAAAAACGGTG
40% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 1 transcripts:
ENSMUST00000232945.2
CDS-3UTR CCA 90 bp CACCGTTTTTACTCCAAGAATTTTAATTACAGCCACAAATACTTTCCGTATTCCTGTAAAAGCATCTGCTaGGTCTGTGTGAGCTCTTCC +
Preference number: 4 (lower is better)
Translates to: HRFYSKNFNYSHKYFPYSCKSIC*VCVSSS
Trigger: GGAAGAGCTCACACAGACCCAGCAGATGCTTTTACA...GGAATACGGAAAGTATTTGTGGCTGTAATTAAAATTCTTGGAGTAAAAACGGTG
40% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 1 transcripts:
ENSMUST00000232945.2
CDS-3UTR CCA 90 bp CTATGCTCTTTCATACACCGATCTTGCCAAAATATAATGCACCTAACAGATACATCAAGTGCCTGTTTTTaGCCCAGAAGAAGCACAATG +
Preference number: 4 (lower is better)
Translates to: LCSFIHRSCQNIMHLTDTSSACF*PRRSTM
Trigger: CATTGTGCTTCTTCTGGGCCAAAAACAGGCACTTGA...TGTATCTGTTAGGTGCATTATATTTTGGCAAGATCGGTGTATGAAAGAGCATAG
40% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000232945.2
CDS-3UTR CCA 90 bp TTTTCTTTGGCCTTTACCATTAGTCCTGTGCTTTTCTCTTTACAGCGGTATCAAATTCACCACAGGAGGTaGTTCTTTCCCATCATTTTC +
Preference number: 4 (lower is better)
Translates to: FSLAFTISPVLFSLQRYQIHHRR*FFPIIF
Trigger: GAAAATGATGGGAAAGAACCACCTCCTGTGGTGAAT...TTGATACCGCTGTAAAGAGAAAAGCACAGGACTAATGGTAAAGGCCAAAGAAAA
40% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 2 transcripts:
ENSMUST00000000129.14
ENSMUST00000233190.2
CDS-3UTR GCA 90 bp TTTTCTTTGGCCTTTACCATTAGTCCTGTGCTTTTCTCTTTACAGCGGTATCAAAGAGTTCAAGTCCTCTaGATGTGTCTTCATTATCCT +
Preference number: 4 (lower is better)
Translates to: FSLAFTISPVLFSLQRYQRVQVL*MCLHYP
Trigger: AGGATAATGAAGACACATGCAGAGGACTTGAACTCT...TTGATACCGCTGTAAAGAGAAAAGCACAGGACTAATGGTAAAGGCCAAAGAAAA
39% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000000129.14
CDS-3UTR GCA 90 bp AGAAAACAAACATATTCTGCCAGTTTGTGGCTGTCCATGCTTGTTGCTACAAGTCTATCTGTTGATGAATaGCTACATAGCTCTTCTTCA +
Preference number: 4 (lower is better)
Translates to: RKQTYSASLWLSMLVATSLSVDE*LHSSSS
Trigger: TGAAGAAGAGCTATGTAGGCATTCATCAACAGATAG...ACTTGTAGCAACAAGCATGGACAGCCACAAACTGGCAGAATATGTTTGTTTTCT
39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000232945.2
CDS-3UTR GCA 90 bp TTGCTGTGGTTAGCTAATACGGCTCTGGGTAGGACTATTTATTTCTTGAATAGAGACCTTGATCATCTCTaGCTCTATCTGTTGATGAAT +
Preference number: 4 (lower is better)
Translates to: LLWLANTALGRTIYFLNRDLDHL*LYLLMN
Trigger: ATTCATCAACAGATAGAGGCAGAGATGATCAAGGTC...TCTATTCAAGAAATAAATAGTCCTACCCAGAGCCGTATTAGCTAACCACAGCAA
39% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000000129.14
CDS-3UTR GCA 90 bp AGAAAACAAACATATTCTGCCAGTTTGTGGCTGTCCATGCTTGTTGCTACAAGTAATTGTATGATAAAGTaGCTCCTTTGTCCGTCAGAA +
Preference number: 4 (lower is better)
Translates to: RKQTYSASLWLSMLVATSNCMIK*LLCPSE
Trigger: TTCTGACGGACAAAGGAGGCACTTTATCATACAATT...ACTTGTAGCAACAAGCATGGACAGCCACAAACTGGCAGAATATGTTTGTTTTCT
39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000232945.2
CDS-3UTR GCA 90 bp CACCGTTTTTACTCCAAGAATTTTAATTACAGCCACAAATACTTTCCGTATTCCTGTTTGAAAACCCGGTaGCCTCGAATCGATACAGAT +
Preference number: 4 (lower is better)
Translates to: HRFYSKNFNYSHKYFPYSCLKTR*PRIDTD
Trigger: ATCTGTATCGATTCGAGGGCACCGGGTTTTCAAACA...GGAATACGGAAAGTATTTGTGGCTGTAATTAAAATTCTTGGAGTAAAAACGGTG
39% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 1 transcripts:
ENSMUST00000232945.2
CDS-3UTR TCA 90 bp GCAAGGAACCTACAACACCGTTTTTACTCCAAGAATTTTAATTACAGCCACAAAACACGCCTATCAGTTTaGCAATATTGGGATGATCAT +
Preference number: 4 (lower is better)
Translates to: ARNLQHRFYSKNFNYSHKTRLSV*QYWDDH
Trigger: ATGATCATCCCAATATTGTCAAACTGATAGGCGTGT...TTTGTGGCTGTAATTAAAATTCTTGGAGTAAAAACGGTGTTGTAGGTTCCTTGC
38% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 1 transcripts:
ENSMUST00000232945.2
CDS-3UTR GCA 90 bp GCAAGGAACCTACAACACCGTTTTTACTCCAAGAATTTTAATTACAGCCACAAAGACCTTGATCATCTCTaGCTCTATCTGTTGATGAAT +
Preference number: 4 (lower is better)
Translates to: ARNLQHRFYSKNFNYSHKDLDHL*LYLLMN
Trigger: ATTCATCAACAGATAGAGGCAGAGATGATCAAGGTC...TTTGTGGCTGTAATTAAAATTCTTGGAGTAAAAACGGTGTTGTAGGTTCCTTGC
38% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000232945.2
CDS-3UTR CCA 90 bp CACCGTTTTTACTCCAAGAATTTTAATTACAGCCACAAATACTTTCCGTATTCCATTCACCACAGGAGGTaGTTCTTTCCCATCATTTTC +
Preference number: 4 (lower is better)
Translates to: HRFYSKNFNYSHKYFPYSIHHRR*FFPIIF
Trigger: GAAAATGATGGGAAAGAACCACCTCCTGTGGTGAAT...GGAATACGGAAAGTATTTGTGGCTGTAATTAAAATTCTTGGAGTAAAAACGGTG
38% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 1 transcripts:
ENSMUST00000232945.2
CDS-3UTR GCA 90 bp CTATGCTCTTTCATACACCGATCTTGCCAAAATATAATGCACCTAACAGATACAGTCTTCAACATGACTTaGAAACTGTCTGCTGTTAAA +
Preference number: 4 (lower is better)
Translates to: LCSFIHRSCQNIMHLTDTVFNMT*KLSAVK
Trigger: TTTAACAGCAGACAGTTTGCAAGTCATGTTGAAGAC...TGTATCTGTTAGGTGCATTATATTTTGGCAAGATCGGTGTATGAAAGAGCATAG
37% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000232945.2
CDS-3UTR GCA 90 bp TTTTCTTTGGCCTTTACCATTAGTCCTGTGCTTTTCTCTTTACAGCGGTATCAATTTTATCCTTTAGTGTaGCCTTATACACTTCACCAA +
Preference number: 4 (lower is better)
Translates to: FSLAFTISPVLFSLQRYQFYPLV*PYTLHQ
Trigger: TTGGTGAAGTGTATAAGGGCACACTAAAGGATAAAA...TTGATACCGCTGTAAAGAGAAAAGCACAGGACTAATGGTAAAGGCCAAAGAAAA
37% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 2 transcripts:
ENSMUST00000000129.14
ENSMUST00000233190.2
CDS-3UTR CCA 90 bp CACCGTTTTTACTCCAAGAATTTTAATTACAGCCACAAATACTTTCCGTATTCCTCAAATGGCATTACCTaGGACCAGTTCCATAATGAT +
Preference number: 4 (lower is better)
Translates to: HRFYSKNFNYSHKYFPYSSNGIT*DQFHND
Trigger: ATCATTATGGAACTGGTCCCAGGTAATGCCATTTGA...GGAATACGGAAAGTATTTGTGGCTGTAATTAAAATTCTTGGAGTAAAAACGGTG
37% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000232945.2
CDS-3UTR GCA 90 bp CACCGTTTTTACTCCAAGAATTTTAATTACAGCCACAAATACTTTCCGTATTCCTTTTCCTGTACTTTTTaGTCCAGCAAAGCTTTCTGT +
Preference number: 4 (lower is better)
Translates to: HRFYSKNFNYSHKYFPYSFSCTF*SSKAFC
Trigger: ACAGAAAGCTTTGCTGGAGCAAAAAGTACAGGAAAA...GGAATACGGAAAGTATTTGTGGCTGTAATTAAAATTCTTGGAGTAAAAACGGTG
36% GC, longest homopolymer 5 nt, total homopolymer stretches 18 nt.
Matches the following 1 transcripts:
ENSMUST00000232945.2
CDS-3UTR GCA 90 bp CTATGCTCTTTCATACACCGATCTTGCCAAAATATAATGCACCTAACAGATACATTTTATCCTTTAGTGTaGCCTTATACACTTCACCAA +
Preference number: 4 (lower is better)
Translates to: LCSFIHRSCQNIMHLTDTFYPLV*PYTLHQ
Trigger: TTGGTGAAGTGTATAAGGGCACACTAAAGGATAAAA...TGTATCTGTTAGGTGCATTATATTTTGGCAAGATCGGTGTATGAAAGAGCATAG
36% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000232945.2
3UTR CAA 72 bp AGGCTTTGTTATCAGGAAAATGTTATGCAAGACTCCTaGGACTCTTTACAAGGAAATATCAAAGAGAGTGAA +
Preference number: 4 (lower is better)
Translates to: RLCYQENVMQDS*DSLQGNIKESE
Trigger: TTCACTCTCTTTGATATTTCCTTGTAAAGAGTCCAAGGAGTCTTGCATAACATTTTCCTGATAACAAAGCCT
36% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000232945.2
CDS CCA 90 bp AGTCTCCTTGCTGCTTCAGCAGTTCCTGTGCCTCTATCCTGGGGATaGCACCATGGTACCAGTCATGCTCCGCCAGGGGCCTCTCACCCA +
Preference number: 5 (lower is better)
Translates to: SLLAASAVPVPLSWG*HHGTSHAPPGASHP
Trigger: TGGGTGAGAGGCCCCTGGCGGAGCATGACTGGTACCATGGTGCCATCCCCAGGATAGAGGCACAGGAACTGCTGAAGCAGCAAGGAGACT
60% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000000129.14
ENSMUST00000038080.7
ENSMUST00000232945.2
ENSMUST00000233190.2
CDS-3UTR CAA 90 bp TGGCAGAGTGGAGAGCAACTGTGGTGGGCACGTGTCCTGCAAGCATGCGCTACCTCCTTTGGGATGGGGTaGAGCAGAACCACCCCAGAC +
Preference number: 5 (lower is better)
Translates to: WQSGEQLWWARVLQACATSFGMG*SRTTPD
Trigger: GTCTGGGGTGGTTCTGCTCAACCCCATCCCAAAGGA...GGTAGCGCATGCTTGCAGGACACGTGCCCACCACAGTTGCTCTCCACTCTGCCA
60% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000000129.14
ENSMUST00000233190.2
CDS GCA 90 bp AGTTCCTGTGCCTCTATCCTGGGGATGGCACCATGGTACCAGTCATaGTCCGCCAGGGGCCTCTCACCCACAGAGATCACATCACACACC +
Preference number: 5 (lower is better)
Translates to: SSCASILGMAPWYQS*SARGLSPTEITSHT
Trigger: GGTGTGTGATGTGATCTCTGTGGGTGAGAGGCCCCTGGCGGAGCATGACTGGTACCATGGTGCCATCCCCAGGATAGAGGCACAGGAACT
59% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000000129.14
ENSMUST00000233190.2
CDS-3UTR CAA 90 bp CTTGGCAGAGTGGAGAGCAACTGTGGTGGGCACGTGTCCTGCAAGCATGCGCTAAGGACGGCCGCCTCCTaGTGTAAAAGCATCTGCTGG +
Preference number: 5 (lower is better)
Translates to: LGRVESNCGGHVSCKHALRTAAS*CKSICW
Trigger: CCAGCAGATGCTTTTACACAAGGAGGCGGCCGTCCT...TAGCGCATGCTTGCAGGACACGTGCCCACCACAGTTGCTCTCCACTCTGCCAAG
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000000129.14
ENSMUST00000233190.2
CDS GCA 90 bp AGTTCCTGTGCCTCTATCCTGGGGATGGCACCATGGTACCAGTCATaGTCCGCCAGGGGCCTCTCACCCACAGAGATCACATCACACACT +
Preference number: 5 (lower is better)
Translates to: SSCASILGMAPWYQS*SARGLSPTEITSHT
Trigger: AGTGTGTGATGTGATCTCTGTGGGTGAGAGGCCCCTGGCGGAGCATGACTGGTACCATGGTGCCATCCCCAGGATAGAGGCACAGGAACT
58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000038080.7
ENSMUST00000232945.2
CDS-3UTR CAA 90 bp TGTGGTGGGCACGTGTCCTGCAAGCATGCGCTACCAAGGCTGTTTATAGCACCACTCGCGCTTGCTGGTTaGTCATTCCAGGGTACGGGC +
Preference number: 5 (lower is better)
Translates to: CGGHVSCKHALPRLFIAPLALAG*SFQGTG
Trigger: GCCCGTACCCTGGAATGACAAACCAGCAAGCGCGAG...TGGTGCTATAAACAGCCTTGGTAGCGCATGCTTGCAGGACACGTGCCCACCACA
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000000129.14
ENSMUST00000233190.2
CDS-3UTR CAA 90 bp TGTGGTGGGCACGTGTCCTGCAAGCATGCGCTACCAAGGCTGTTTATAGCACCAAGGACGGCCGCCTCCTaGTGTAAAAGCATCTGCTGG +
Preference number: 5 (lower is better)
Translates to: CGGHVSCKHALPRLFIAPRTAAS*CKSICW
Trigger: CCAGCAGATGCTTTTACACAAGGAGGCGGCCGTCCT...TGGTGCTATAAACAGCCTTGGTAGCGCATGCTTGCAGGACACGTGCCCACCACA
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000000129.14
ENSMUST00000233190.2
CDS-3UTR CAA 90 bp CTTGGCAGAGTGGAGAGCAACTGTGGTGGGCACGTGTCCTGCAAGCATGCGCTATTCTTCTTGCATCTTTaGCACGGAGTCCAGCAGCAG +
Preference number: 5 (lower is better)
Translates to: LGRVESNCGGHVSCKHALFFLHL*HGVQQQ
Trigger: CTGCTGCTGGACTCCGTGCAAAAGATGCAAGAAGAA...TAGCGCATGCTTGCAGGACACGTGCCCACCACAGTTGCTCTCCACTCTGCCAAG
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000000129.14
ENSMUST00000233190.2
CDS-3UTR CAA 90 bp AGCAACTGTGGTGGGCACGTGTCCTGCAAGCATGCGCTACCAAGGCTGTTTATATCCTTTGGGATGGGGTaGAGCAGAACCACCCCAGAC +
Preference number: 5 (lower is better)
Translates to: SNCGGHVSCKHALPRLFISFGMG*SRTTPD
Trigger: GTCTGGGGTGGTTCTGCTCAACCCCATCCCAAAGGA...TATAAACAGCCTTGGTAGCGCATGCTTGCAGGACACGTGCCCACCACAGTTGCT
56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000000129.14
ENSMUST00000233190.2
CDS-3UTR CAA 90 bp GCAGTAAGGTGGTATAAAGTGGGGGTGACTGAGGACAGAGTCCTACAGGTGGCATCCTTTGGGATGGGGTaGAGCAGAACCACCCCAGAC +
Preference number: 5 (lower is better)
Translates to: AVRWYKVGVTEDRVLQVASFGMG*SRTTPD
Trigger: GTCTGGGGTGGTTCTGCTCAACCCCATCCCAAAGGA...TGCCACCTGTAGGACTCTGTCCTCAGTCACCCCCACTTTATACCACCTTACTGC
56% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 3 transcripts:
ENSMUST00000000129.14
ENSMUST00000038080.7
ENSMUST00000233190.2
CDS-3UTR CAA 90 bp GTTGCAGTAAGGTGGTATAAAGTGGGGGTGACTGAGGACAGAGTCCTACAGGTGCTCGCGCTTGCTGGTTaGTCATTCCAGGGTACGGGC +
Preference number: 5 (lower is better)
Translates to: VAVRWYKVGVTEDRVLQVLALAG*SFQGTG
Trigger: GCCCGTACCCTGGAATGACAAACCAGCAAGCGCGAG...CACCTGTAGGACTCTGTCCTCAGTCACCCCCACTTTATACCACCTTACTGCAAC
56% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000000129.14
ENSMUST00000038080.7
ENSMUST00000233190.2
CDS-3UTR CAA 90 bp GTAAGGTGGTATAAAGTGGGGGTGACTGAGGACAGAGTCCTACAGGTGGCATCCCACCAGGAAGTCTCCTaGCTGCTTCAGCAGTTCCTG +
Preference number: 5 (lower is better)
Translates to: VRWYKVGVTEDRVLQVASHQEVS*LLQQFL
Trigger: CAGGAACTGCTGAAGCAGCAAGGAGACTTCCTGGTG...GGATGCCACCTGTAGGACTCTGTCCTCAGTCACCCCCACTTTATACCACCTTAC
54% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000000129.14
ENSMUST00000038080.7
ENSMUST00000233190.2
CDS-3UTR CAA 90 bp GTAAGGTGGTATAAAGTGGGGGTGACTGAGGACAGAGTCCTACAGGTGGCATCCGTAGACAGGCTGTCTTaGTGTGCACACGCCTATCAG +
Preference number: 5 (lower is better)
Translates to: VRWYKVGVTEDRVLQVASVDRLS*CAHAYQ
Trigger: CTGATAGGCGTGTGCACACAAAGACAGCCTGTCTAC...GGATGCCACCTGTAGGACTCTGTCCTCAGTCACCCCCACTTTATACCACCTTAC
53% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000000129.14
ENSMUST00000038080.7
ENSMUST00000233190.2
CDS-3UTR CAA 90 bp GCAGTAAGGTGGTATAAAGTGGGGGTGACTGAGGACAGAGTCCTACAGGTGGCAGTAGACAGGCTGTCTTaGTGTGCACACGCCTATCAG +
Preference number: 5 (lower is better)
Translates to: AVRWYKVGVTEDRVLQVAVDRLS*CAHAYQ
Trigger: CTGATAGGCGTGTGCACACAAAGACAGCCTGTCTAC...TGCCACCTGTAGGACTCTGTCCTCAGTCACCCCCACTTTATACCACCTTACTGC
53% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000000129.14
ENSMUST00000038080.7
ENSMUST00000233190.2
CDS GCA 90 bp CTCTTCTCTAGCTCCAGGACGGCCGCCTCCTTGTGTAAAAGCATCTaGTGGGTCTGTGTGAGCTCTTCCGCTAAAGTCTTCAACATGACT +
Preference number: 5 (lower is better)
Translates to: LFSSSRTAASLCKSI*WVCVSSSAKVFNMT
Trigger: AGTCATGTTGAAGACTTTAGCGGAAGAGCTCACACAGACCCAGCAGATGCTTTTACACAAGGAGGCGGCCGTCCTGGAGCTAGAGAAGAG
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000000129.14
ENSMUST00000232945.2
ENSMUST00000233190.2
CDS CCA 90 bp TTCTCTAGCTCCAGGACGGCCGCCTCCTTGTGTAAAAGCATCTGCTaGGTCTGTGTGAGCTCTTCCGCTAAAGTCTTCAACATGACTTGC +
Preference number: 5 (lower is better)
Translates to: FSSSRTAASLCKSIC*VCVSSSAKVFNMTC
Trigger: GCAAGTCATGTTGAAGACTTTAGCGGAAGAGCTCACACAGACCCAGCAGATGCTTTTACACAAGGAGGCGGCCGTCCTGGAGCTAGAGAA
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000000129.14
ENSMUST00000232945.2
ENSMUST00000233190.2
CDS-3UTR CAA 90 bp GTAAGGTGGTATAAAGTGGGGGTGACTGAGGACAGAGTCCTACAGGTGGCATCCACTTGCTGCTTGTCCTaGATCATCATGGTGAGCCTG +
Preference number: 5 (lower is better)
Translates to: VRWYKVGVTEDRVLQVASTCCLS*IIMVSL
Trigger: CAGGCTCACCATGATGATCAAGGACAAGCAGCAAGT...GGATGCCACCTGTAGGACTCTGTCCTCAGTCACCCCCACTTTATACCACCTTAC
52% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000000129.14
CDS-3UTR CAA 90 bp GTAAGGTGGTATAAAGTGGGGGTGACTGAGGACAGAGTCCTACAGGTGGCATCCTTCTTCTTGCATCTTTaGCACGGAGTCCAGCAGCAG +
Preference number: 5 (lower is better)
Translates to: VRWYKVGVTEDRVLQVASFFLHL*HGVQQQ
Trigger: CTGCTGCTGGACTCCGTGCAAAAGATGCAAGAAGAA...GGATGCCACCTGTAGGACTCTGTCCTCAGTCACCCCCACTTTATACCACCTTAC
52% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000000129.14
ENSMUST00000233190.2
CDS-3UTR CAA 90 bp ATGGTTGCAGTAAGGTGGTATAAAGTGGGGGTGACTGAGGACAGAGTCCTACAGCACCAGGAAGTCTCCTaGCTGCTTCAGCAGTTCCTG +
Preference number: 5 (lower is better)
Translates to: MVAVRWYKVGVTEDRVLQHQEVS*LLQQFL
Trigger: CAGGAACTGCTGAAGCAGCAAGGAGACTTCCTGGTG...CTGTAGGACTCTGTCCTCAGTCACCCCCACTTTATACCACCTTACTGCAACCAT
52% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000000129.14
ENSMUST00000038080.7
ENSMUST00000233190.2
CDS TCA 90 bp CGCCAGGGGCCTCTCACCCACAGAGATCACATCACACACCTGTGTTaGAGATCCGAGTACCGACTTTGGAGACTTAATTATCCCAGCAAT +
Preference number: 5 (lower is better)
Translates to: RQGPLTHRDHITHLC*RSEYRLWRLNYPSN
Trigger: ATTGCTGGGATAATTAAGTCTCCAAAGTCGGTACTCGGATCTTCAACACAGGTGTGTGATGTGATCTCTGTGGGTGAGAGGCCCCTGGCG
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000000129.14
ENSMUST00000233190.2
CDS CCA 90 bp TTTCTTCTTGCATCTTTTGCACGGAGTCCAGCAGCAGAGGAAGTGTaGTATCATAGTACTGGCTCTGATGGAGCTGTGCCCCCTTCAGTG +
Preference number: 5 (lower is better)
Translates to: FLLASFARSPAAEEV*YHSTGSDGAVPPSV
Trigger: CACTGAAGGGGGCACAGCTCCATCAGAGCCAGTACTATGATACCACACTTCCTCTGCTGCTGGACTCCGTGCAAAAGATGCAAGAAGAAA
51% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 4 transcripts:
ENSMUST00000000129.14
ENSMUST00000232945.2
ENSMUST00000233190.2
ENSMUST00000233225.2
CDS-3UTR CAA 90 bp CTTGGCAGAGTGGAGAGCAACTGTGGTGGGCACGTGTCCTGCAAGCATGCGCTAATTTTCCTGTACTTTTaGCTCCAGCAAAGCTTTCTG +
Preference number: 5 (lower is better)
Translates to: LGRVESNCGGHVSCKHALIFLYF*LQQSFL
Trigger: CAGAAAGCTTTGCTGGAGCAAAAAGTACAGGAAAAT...TAGCGCATGCTTGCAGGACACGTGCCCACCACAGTTGCTCTCCACTCTGCCAAG
51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000000129.14
ENSMUST00000233190.2
CDS-3UTR CAA 90 bp GGTGGGCACGTGTCCTGCAAGCATGCGCTACCAAGGCTGTTTATAGCACCAACCGATAAAGTGCCTCCTTaGTCCGTCAGAATATACAGA +
Preference number: 5 (lower is better)
Translates to: GGHVSCKHALPRLFIAPTDKVPP*SVRIYR
Trigger: TCTGTATATTCTGACGGACAAAGGAGGCACTTTATC...GGTTGGTGCTATAAACAGCCTTGGTAGCGCATGCTTGCAGGACACGTGCCCACC
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000000129.14
ENSMUST00000233190.2
CDS-3UTR CAA 90 bp AGCAACTGTGGTGGGCACGTGTCCTGCAAGCATGCGCTACCAAGGCTGTTTATAACCACCCCAGACTTCTaGGTGATGACTTGCTTTGTA +
Preference number: 5 (lower is better)
Translates to: SNCGGHVSCKHALPRLFITTPDF*VMTCFV
Trigger: TACAAAGCAAGTCATCACCAAGAAGTCTGGGGTGGT...TATAAACAGCCTTGGTAGCGCATGCTTGCAGGACACGTGCCCACCACAGTTGCT
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000000129.14
ENSMUST00000233190.2
CDS-3UTR CAA 90 bp GTAAGGTGGTATAAAGTGGGGGTGACTGAGGACAGAGTCCTACAGGTGGCATCCACCACCCCAGACTTCTaGGTGATGACTTGCTTTGTA +
Preference number: 5 (lower is better)
Translates to: VRWYKVGVTEDRVLQVASTTPDF*VMTCFV
Trigger: TACAAAGCAAGTCATCACCAAGAAGTCTGGGGTGGT...GGATGCCACCTGTAGGACTCTGTCCTCAGTCACCCCCACTTTATACCACCTTAC
51% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000000129.14
ENSMUST00000038080.7
ENSMUST00000233190.2
CDS GCA 90 bp AGCAAAGCTTTCTGTGCTGCACACTTTGCCTCAGTGCATCGCAACTaGTGGACTGACTGTTTCAACTCTTCAAGTGCCTGTTTTTGGCCC +
Preference number: 5 (lower is better)
Translates to: SKAFCAAHFASVHRN*WTDCFNSSSACFWP
Trigger: GGGCCAAAAACAGGCACTTGAAGAGTTGAAACAGTCAGTCCAGCAGTTGCGATGCACTGAGGCAAAGTGTGCAGCACAGAAAGCTTTGCT
50% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000000129.14
ENSMUST00000232945.2
ENSMUST00000233190.2
CDS GCA 90 bp AGATACAACATGCCAGCAGCAACGTCCAAGGAAAATCTCACCAACTaGTTCAGCTTCAGCTCGTCCTTCCTCTTCCTCAGGAAGGTCAGA +
Preference number: 5 (lower is better)
Translates to: RYNMPAATSKENLTN*FSFSSSFLFLRKVR
Trigger: TCTGACCTTCCTGAGGAAGAGGAAGGACGAGCTGAAGCTGAAGCAGTTGGTGAGATTTTCCTTGGACGTTGCTGCTGGCATGTTGTATCT
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000000129.14
ENSMUST00000038080.7
ENSMUST00000233190.2
CDS-3UTR CAA 90 bp GCAGTAAGGTGGTATAAAGTGGGGGTGACTGAGGACAGAGTCCTACAGGTGGCATTCAAGTGCCTGTTTTaGGCCCAGAAGAAGCACAAT +
Preference number: 5 (lower is better)
Translates to: AVRWYKVGVTEDRVLQVAFKCLF*AQKKHN
Trigger: ATTGTGCTTCTTCTGGGCCAAAAACAGGCACTTGAA...TGCCACCTGTAGGACTCTGTCCTCAGTCACCCCCACTTTATACCACCTTACTGC
50% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000000129.14
ENSMUST00000233190.2
CDS TCA 90 bp TTTCTGTGCTGCACACTTTGCCTCAGTGCATCGCAACTGCTGGACTaGCTGTTTCAACTCTTCAAGTGCCTGTTTTTGGCCCAGAAGAAG +
Preference number: 5 (lower is better)
Translates to: FLCCTLCLSASQLLD*LFQLFKCLFLAQKK
Trigger: CTTCTTCTGGGCCAAAAACAGGCACTTGAAGAGTTGAAACAGTCAGTCCAGCAGTTGCGATGCACTGAGGCAAAGTGTGCAGCACAGAAA
49% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000000129.14
ENSMUST00000232945.2
ENSMUST00000233190.2
CDS GCA 90 bp CAGCAGAGGAAGTGTGGTATCATAGTACTGGCTCTGATGGAGCTGTaGCCCCTTCAGTGCCAACACATACTGATTATGCAGCATATGAAG +
Preference number: 5 (lower is better)
Translates to: QQRKCGIIVLALMEL*PLQCQHILIMQHMK
Trigger: CTTCATATGCTGCATAATCAGTATGTGTTGGCACTGAAGGGGGCACAGCTCCATCAGAGCCAGTACTATGATACCACACTTCCTCTGCTG
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000000129.14
ENSMUST00000232945.2
ENSMUST00000233190.2
ENSMUST00000233225.2
CDS GCA 90 bp CTTTTTGCTCCAGCAAAGCTTTCTGTGCTGCACACTTTGCCTCAGTaGATCGCAACTGCTGGACTGACTGTTTCAACTCTTCAAGTGCCT +
Preference number: 5 (lower is better)
Translates to: LFAPAKLSVLHTLPQ*IATAGLTVSTLQVP
Trigger: AGGCACTTGAAGAGTTGAAACAGTCAGTCCAGCAGTTGCGATGCACTGAGGCAAAGTGTGCAGCACAGAAAGCTTTGCTGGAGCAAAAAG
49% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000000129.14
ENSMUST00000232945.2
ENSMUST00000233190.2
CDS CCA 90 bp AAAGCTTTCTGTGCTGCACACTTTGCCTCAGTGCATCGCAACTGCTaGACTGACTGTTTCAACTCTTCAAGTGCCTGTTTTTGGCCCAGA +
Preference number: 5 (lower is better)
Translates to: KAFCAAHFASVHRNC*TDCFNSSSACFWPR
Trigger: TCTGGGCCAAAAACAGGCACTTGAAGAGTTGAAACAGTCAGTCCAGCAGTTGCGATGCACTGAGGCAAAGTGTGCAGCACAGAAAGCTTT
49% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000000129.14
ENSMUST00000232945.2
ENSMUST00000233190.2
CDS-3UTR CAA 90 bp TGTGGTGGGCACGTGTCCTGCAAGCATGCGCTACCAAGGCTGTTTATAGCACCAATTTTCCTGTACTTTTaGCTCCAGCAAAGCTTTCTG +
Preference number: 5 (lower is better)
Translates to: CGGHVSCKHALPRLFIAPIFLYF*LQQSFL
Trigger: CAGAAAGCTTTGCTGGAGCAAAAAGTACAGGAAAAT...TGGTGCTATAAACAGCCTTGGTAGCGCATGCTTGCAGGACACGTGCCCACCACA
49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000000129.14
ENSMUST00000233190.2
CDS-3UTR CAA 90 bp GCAGTAAGGTGGTATAAAGTGGGGGTGACTGAGGACAGAGTCCTACAGGTGGCAGATAAAGTGCCTCCTTaGTCCGTCAGAATATACAGA +
Preference number: 5 (lower is better)
Translates to: AVRWYKVGVTEDRVLQVADKVPP*SVRIYR
Trigger: TCTGTATATTCTGACGGACAAAGGAGGCACTTTATC...TGCCACCTGTAGGACTCTGTCCTCAGTCACCCCCACTTTATACCACCTTACTGC
49% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000000129.14
ENSMUST00000038080.7
ENSMUST00000233190.2
CDS-3UTR CAA 90 bp GTAAGGTGGTATAAAGTGGGGGTGACTGAGGACAGAGTCCTACAGGTGGCATCCGATAAAGTGCCTCCTTaGTCCGTCAGAATATACAGA +
Preference number: 5 (lower is better)
Translates to: VRWYKVGVTEDRVLQVASDKVPP*SVRIYR
Trigger: TCTGTATATTCTGACGGACAAAGGAGGCACTTTATC...GGATGCCACCTGTAGGACTCTGTCCTCAGTCACCCCCACTTTATACCACCTTAC
49% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000000129.14
ENSMUST00000038080.7
ENSMUST00000233190.2
CDS-3UTR CAA 90 bp GCAGTAAGGTGGTATAAAGTGGGGGTGACTGAGGACAGAGTCCTACAGGTGGCACTTCTTGGTGATGACTaGCTTTGTATTGAAGTGGTG +
Preference number: 5 (lower is better)
Translates to: AVRWYKVGVTEDRVLQVALLGDD*LCIEVV
Trigger: CACCACTTCAATACAAAGCAAGTCATCACCAAGAAG...TGCCACCTGTAGGACTCTGTCCTCAGTCACCCCCACTTTATACCACCTTACTGC
49% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000000129.14
ENSMUST00000038080.7
ENSMUST00000233190.2
CDS-3UTR CAA 90 bp AGTCCTGTGCTTTTCTCTTTACAGCGGTATCAAATGGCAGGGTTGCTGTGGTTAGTAGACAGGCTGTCTTaGTGTGCACACGCCTATCAG +
Preference number: 5 (lower is better)
Translates to: SPVLFSLQRYQMAGLLWLVDRLS*CAHAYQ
Trigger: CTGATAGGCGTGTGCACACAAAGACAGCCTGTCTAC...TAACCACAGCAACCCTGCCATTTGATACCGCTGTAAAGAGAAAAGCACAGGACT
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000000129.14
ENSMUST00000233190.2
CDS-3UTR CAA 90 bp GTAAGGTGGTATAAAGTGGGGGTGACTGAGGACAGAGTCCTACAGGTGGCATCCCTCTCCTTTCTTTCCTaGTATCTCAGGATCTCTGAT +
Preference number: 5 (lower is better)
Translates to: VRWYKVGVTEDRVLQVASLSFLS*YLRISD
Trigger: ATCAGAGATCCTGAGATACAAGGAAAGAAAGGAGAG...GGATGCCACCTGTAGGACTCTGTCCTCAGTCACCCCCACTTTATACCACCTTAC
49% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000038080.7
CDS GCA 90 bp CTCTTCTTCACTTGCTGCTTGTCCTTGATCATCATGGTGAGCCTGTaGAAGGGTCCAGAGTTCAAGTCCTCTGCATGTGTCTTCATTATC +
Preference number: 5 (lower is better)
Translates to: LFFTCCLSLIIMVSL*KGPEFKSSACVFII
Trigger: GATAATGAAGACACATGCAGAGGACTTGAACTCTGGACCCTTGCACAGGCTCACCATGATGATCAAGGACAAGCAGCAAGTGAAGAAGAG
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000000129.14
ENSMUST00000232945.2
ENSMUST00000233225.2
CDS-3UTR CAA 90 bp GTAAGGTGGTATAAAGTGGGGGTGACTGAGGACAGAGTCCTACAGGTGGCATCCCGAATAGACTCAAATTaGGATAGCCTCTCCTTTCTT +
Preference number: 5 (lower is better)
Translates to: VRWYKVGVTEDRVLQVASRIDSN*DSLSFL
Trigger: AAGAAAGGAGAGGCTATCCAAATTTGAGTCTATTCG...GGATGCCACCTGTAGGACTCTGTCCTCAGTCACCCCCACTTTATACCACCTTAC
48% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000000129.14
ENSMUST00000038080.7
ENSMUST00000233190.2
CDS-3UTR CAA 90 bp GCAGTAAGGTGGTATAAAGTGGGGGTGACTGAGGACAGAGTCCTACAGGTGGCACGAATAGACTCAAATTaGGATAGCCTCTCCTTTCTT +
Preference number: 5 (lower is better)
Translates to: AVRWYKVGVTEDRVLQVARIDSN*DSLSFL
Trigger: AAGAAAGGAGAGGCTATCCAAATTTGAGTCTATTCG...TGCCACCTGTAGGACTCTGTCCTCAGTCACCCCCACTTTATACCACCTTACTGC
48% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000000129.14
ENSMUST00000038080.7
ENSMUST00000233190.2
CDS-3UTR CAA 90 bp ATGGTTGCAGTAAGGTGGTATAAAGTGGGGGTGACTGAGGACAGAGTCCTACAGTCACCAAAATTCCCCTaGCCCAGTAATTCTCCCAAT +
Preference number: 5 (lower is better)
Translates to: MVAVRWYKVGVTEDRVLQSPKFP*PSNSPN
Trigger: ATTGGGAGAATTACTGGGCAAGGGGAATTTTGGTGA...CTGTAGGACTCTGTCCTCAGTCACCCCCACTTTATACCACCTTACTGCAACCAT
48% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 3 transcripts:
ENSMUST00000000129.14
ENSMUST00000038080.7
ENSMUST00000233190.2
CDS-3UTR CAA 90 bp GTAAGGTGGTATAAAGTGGGGGTGACTGAGGACAGAGTCCTACAGGTGGCATCCTATGTGATCATCTTCTaGATGACAGTGAGCTCTTTG +
Preference number: 5 (lower is better)
Translates to: VRWYKVGVTEDRVLQVASYVIIF*MTVSSL
Trigger: CAAAGAGCTCACTGTCATCAAGAAGATGATCACATA...GGATGCCACCTGTAGGACTCTGTCCTCAGTCACCCCCACTTTATACCACCTTAC
48% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000000129.14
ENSMUST00000038080.7
ENSMUST00000233190.2
CDS GCA 90 bp GCCATAAATTTCTTCACTGTCTCCAGCAACCGTAGTTCCCAGTCTTaGAACTTTAACACAGCTTCCTGTGAGTTCTTCAGGTCACTCCCA +
Preference number: 5 (lower is better)
Translates to: AINFFTVSSNRSSQS*NFNTASCEFFRSLP
Trigger: TGGGAGTGACCTGAAGAACTCACAGGAAGCTGTGTTAAAGTTGCAAGACTGGGAACTACGGTTGCTGGAGACAGTGAAGAAATTTATGGC
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000000129.14
ENSMUST00000232945.2
ENSMUST00000233190.2
CDS GCA 90 bp TGTGGTATCATAGTACTGGCTCTGATGGAGCTGTGCCCCCTTCAGTaGCAACACATACTGATTATGCAGCATATGAAGCTTCATTGTAGC +
Preference number: 5 (lower is better)
Translates to: CGIIVLALMELCPLQ*QHILIMQHMKLHCS
Trigger: GCTACAATGAAGCTTCATATGCTGCATAATCAGTATGTGTTGGCACTGAAGGGGGCACAGCTCCATCAGAGCCAGTACTATGATACCACA
47% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 4 transcripts:
ENSMUST00000000129.14
ENSMUST00000232945.2
ENSMUST00000233190.2
ENSMUST00000233225.2
CDS-3UTR CAA 90 bp CCTGTGCTTTTCTCTTTACAGCGGTATCAAATGGCAGGGTTGCTGTGGTTAGCTTCTGTCTTTGTGACCTaGATCATCTCTGCCTCTATC +
Preference number: 5 (lower is better)
Translates to: PVLFSLQRYQMAGLLWLASVFVT*IISASI
Trigger: GATAGAGGCAGAGATGATCAAGGTCACAAAGACAGA...AGCTAACCACAGCAACCCTGCCATTTGATACCGCTGTAAAGAGAAAAGCACAGG
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000000129.14
CDS-3UTR CAA 90 bp GTTGCAGTAAGGTGGTATAAAGTGGGGGTGACTGAGGACAGAGTCCTACAGGTGCGAATAGACTCAAATTaGGATAGCCTCTCCTTTCTT +
Preference number: 5 (lower is better)
Translates to: VAVRWYKVGVTEDRVLQVRIDSN*DSLSFL
Trigger: AAGAAAGGAGAGGCTATCCAAATTTGAGTCTATTCG...CACCTGTAGGACTCTGTCCTCAGTCACCCCCACTTTATACCACCTTACTGCAAC
47% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000000129.14
ENSMUST00000038080.7
ENSMUST00000233190.2
CDS-3UTR CAA 90 bp AGAAAACAAACATATTCTGCCAGTTTGTGGCTGTCCATGCTTGTTGCTACAAGTCACCAGGAAGTCTCCTaGCTGCTTCAGCAGTTCCTG +
Preference number: 5 (lower is better)
Translates to: RKQTYSASLWLSMLVATSHQEVS*LLQQFL
Trigger: CAGGAACTGCTGAAGCAGCAAGGAGACTTCCTGGTG...ACTTGTAGCAACAAGCATGGACAGCCACAAACTGGCAGAATATGTTTGTTTTCT
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000232945.2
CDS-3UTR CAA 90 bp ATGGTTGCAGTAAGGTGGTATAAAGTGGGGGTGACTGAGGACAGAGTCCTACAGCTTCTTGGTGATGACTaGCTTTGTATTGAAGTGGTG +
Preference number: 5 (lower is better)
Translates to: MVAVRWYKVGVTEDRVLQLLGDD*LCIEVV
Trigger: CACCACTTCAATACAAAGCAAGTCATCACCAAGAAG...CTGTAGGACTCTGTCCTCAGTCACCCCCACTTTATACCACCTTACTGCAACCAT
47% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000000129.14
ENSMUST00000038080.7
ENSMUST00000233190.2
CDS-3UTR CAA 90 bp CTATGCTCTTTCATACACCGATCTTGCCAAAATATAATGCACCTAACAGATACAAGGACGGCCGCCTCCTaGTGTAAAAGCATCTGCTGG +
Preference number: 5 (lower is better)
Translates to: LCSFIHRSCQNIMHLTDTRTAAS*CKSICW
Trigger: CCAGCAGATGCTTTTACACAAGGAGGCGGCCGTCCT...TGTATCTGTTAGGTGCATTATATTTTGGCAAGATCGGTGTATGAAAGAGCATAG
46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000232945.2
CDS-3UTR CAA 90 bp CAAATGGCAGGGTTGCTGTGGTTAGCTAATACGGCTCTGGGTAGGACTATTTATTTCAAGTGCCTGTTTTaGGCCCAGAAGAAGCACAAT +
Preference number: 5 (lower is better)
Translates to: QMAGLLWLANTALGRTIYFKCLF*AQKKHN
Trigger: ATTGTGCTTCTTCTGGGCCAAAAACAGGCACTTGAA...ATAAATAGTCCTACCCAGAGCCGTATTAGCTAACCACAGCAACCCTGCCATTTG
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000000129.14
ENSMUST00000233190.2
CDS-3UTR CAA 90 bp GGCCTTTTTCTTTGGCCTTTACCATTAGTCCTGTGCTTTTCTCTTTACAGCGGTACCACCCCAGACTTCTaGGTGATGACTTGCTTTGTA +
Preference number: 5 (lower is better)
Translates to: GLFLWPLPLVLCFSLYSGTTPDF*VMTCFV
Trigger: TACAAAGCAAGTCATCACCAAGAAGTCTGGGGTGGT...ACCGCTGTAAAGAGAAAAGCACAGGACTAATGGTAAAGGCCAAAGAAAAAGGCC
46% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 2 transcripts:
ENSMUST00000000129.14
ENSMUST00000233190.2
CDS-3UTR CAA 90 bp CTATGCTCTTTCATACACCGATCTTGCCAAAATATAATGCACCTAACAGATACATCCTTTGGGATGGGGTaGAGCAGAACCACCCCAGAC +
Preference number: 5 (lower is better)
Translates to: LCSFIHRSCQNIMHLTDTSFGMG*SRTTPD
Trigger: GTCTGGGGTGGTTCTGCTCAACCCCATCCCAAAGGA...TGTATCTGTTAGGTGCATTATATTTTGGCAAGATCGGTGTATGAAAGAGCATAG
46% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 1 transcripts:
ENSMUST00000232945.2
CDS-3UTR CAA 90 bp AGTCCTGTGCTTTTCTCTTTACAGCGGTATCAAATGGCAGGGTTGCTGTGGTTATCACCAAAATTCCCCTaGCCCAGTAATTCTCCCAAT +
Preference number: 5 (lower is better)
Translates to: SPVLFSLQRYQMAGLLWLSPKFP*PSNSPN
Trigger: ATTGGGAGAATTACTGGGCAAGGGGAATTTTGGTGA...TAACCACAGCAACCCTGCCATTTGATACCGCTGTAAAGAGAAAAGCACAGGACT
46% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 2 transcripts:
ENSMUST00000000129.14
ENSMUST00000233190.2
CDS-3UTR CAA 90 bp AGAAAACAAACATATTCTGCCAGTTTGTGGCTGTCCATGCTTGTTGCTACAAGTACTTGCTGCTTGTCCTaGATCATCATGGTGAGCCTG +
Preference number: 5 (lower is better)
Translates to: RKQTYSASLWLSMLVATSTCCLS*IIMVSL
Trigger: CAGGCTCACCATGATGATCAAGGACAAGCAGCAAGT...ACTTGTAGCAACAAGCATGGACAGCCACAAACTGGCAGAATATGTTTGTTTTCT
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000232945.2
CDS-3UTR CAA 90 bp TGGCCTTTACCATTAGTCCTGTGCTTTTCTCTTTACAGCGGTATCAAATGGCAGTTCTTCACTTGCTGCTaGTCCTTGATCATCATGGTG +
Preference number: 5 (lower is better)
Translates to: WPLPLVLCFSLYSGIKWQFFTCC*SLIIMV
Trigger: CACCATGATGATCAAGGACAAGCAGCAAGTGAAGAA...CTGCCATTTGATACCGCTGTAAAGAGAAAAGCACAGGACTAATGGTAAAGGCCA
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000000129.14
CDS-3UTR CAA 90 bp CTAGAGTACTTTGGGAGCAACCAAACTAGTGTGGTAAAACAGGATGCTAATCCGCTCTGCCTCTATCTGTaGATGAATGCCTACATAGCT +
Preference number: 5 (lower is better)
Translates to: LEYFGSNQTSVVKQDANPLCLYL*MNAYIA
Trigger: AGCTATGTAGGCATTCATCAACAGATAGAGGCAGAG...CGGATTAGCATCCTGTTTTACCACACTAGTTTGGTTGCTCCCAAAGTACTCTAG
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000232945.2
CDS-3UTR CAA 90 bp AAACCAGAAAACAAACATATTCTGCCAGTTTGTGGCTGTCCATGCTTGTTGCTATTCTTCTTGCATCTTTaGCACGGAGTCCAGCAGCAG +
Preference number: 5 (lower is better)
Translates to: KPENKHILPVCGCPCLLLFFLHL*HGVQQQ
Trigger: CTGCTGCTGGACTCCGTGCAAAAGATGCAAGAAGAA...TAGCAACAAGCATGGACAGCCACAAACTGGCAGAATATGTTTGTTTTCTGGTTT
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000232945.2
CDS-3UTR CAA 90 bp ATGGTTGCAGTAAGGTGGTATAAAGTGGGGGTGACTGAGGACAGAGTCCTACAGCAGATTATCGACAAATaGTATGATAAAGTGCCTCCT +
Preference number: 5 (lower is better)
Translates to: MVAVRWYKVGVTEDRVLQQIIDK*YDKVPP
Trigger: AGGAGGCACTTTATCATACAATTTGTCGATAATCTG...CTGTAGGACTCTGTCCTCAGTCACCCCCACTTTATACCACCTTACTGCAACCAT
44% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000000129.14
ENSMUST00000038080.7
ENSMUST00000233190.2
CDS-3UTR CAA 90 bp AACCAGAAAACAAACATATTCTGCCAGTTTGTGGCTGTCCATGCTTGTTGCTACACCACCCCAGACTTCTaGGTGATGACTTGCTTTGTA +
Preference number: 5 (lower is better)
Translates to: NQKTNIFCQFVAVHACCYTTPDF*VMTCFV
Trigger: TACAAAGCAAGTCATCACCAAGAAGTCTGGGGTGGT...GTAGCAACAAGCATGGACAGCCACAAACTGGCAGAATATGTTTGTTTTCTGGTT
44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000232945.2
CDS-3UTR CAA 90 bp TGGCCTTTACCATTAGTCCTGTGCTTTTCTCTTTACAGCGGTATCAAATGGCAGTCACCAAAATTCCCCTaGCCCAGTAATTCTCCCAAT +
Preference number: 5 (lower is better)
Translates to: WPLPLVLCFSLYSGIKWQSPKFP*PSNSPN
Trigger: ATTGGGAGAATTACTGGGCAAGGGGAATTTTGGTGA...CTGCCATTTGATACCGCTGTAAAGAGAAAAGCACAGGACTAATGGTAAAGGCCA
44% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 2 transcripts:
ENSMUST00000000129.14
ENSMUST00000233190.2
CDS GCA 90 bp TGCTGGGTCTGTGTGAGCTCTTCCGCTAAAGTCTTCAACATGACTTaGAAACTGTCTGCTGTTAAATTATTCCACATGATCTCATTTGCC +
Preference number: 5 (lower is better)
Translates to: CWVCVSSSAKVFNMT*KLSAVKLFHMISFA
Trigger: GGCAAATGAGATCATGTGGAATAATTTAACAGCAGACAGTTTGCAAGTCATGTTGAAGACTTTAGCGGAAGAGCTCACACAGACCCAGCA
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000000129.14
ENSMUST00000232945.2
ENSMUST00000233190.2
CDS-3UTR CAA 90 bp AACCAGAAAACAAACATATTCTGCCAGTTTGTGGCTGTCCATGCTTGTTGCTACTCACCAAAATTCCCCTaGCCCAGTAATTCTCCCAAT +
Preference number: 5 (lower is better)
Translates to: NQKTNIFCQFVAVHACCYSPKFP*PSNSPN
Trigger: ATTGGGAGAATTACTGGGCAAGGGGAATTTTGGTGA...GTAGCAACAAGCATGGACAGCCACAAACTGGCAGAATATGTTTGTTTTCTGGTT
43% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 1 transcripts:
ENSMUST00000232945.2
CDS-3UTR CAA 90 bp GCAAGGAACCTACAACACCGTTTTTACTCCAAGAATTTTAATTACAGCCACAAAGTAGACAGGCTGTCTTaGTGTGCACACGCCTATCAG +
Preference number: 5 (lower is better)
Translates to: ARNLQHRFYSKNFNYSHKVDRLS*CAHAYQ
Trigger: CTGATAGGCGTGTGCACACAAAGACAGCCTGTCTAC...TTTGTGGCTGTAATTAAAATTCTTGGAGTAAAAACGGTGTTGTAGGTTCCTTGC
43% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000232945.2
CDS-3UTR CAA 90 bp CAAATGGCAGGGTTGCTGTGGTTAGCTAATACGGCTCTGGGTAGGACTATTTATTATGTGATCATCTTCTaGATGACAGTGAGCTCTTTG +
Preference number: 5 (lower is better)
Translates to: QMAGLLWLANTALGRTIYYVIIF*MTVSSL
Trigger: CAAAGAGCTCACTGTCATCAAGAAGATGATCACATA...ATAAATAGTCCTACCCAGAGCCGTATTAGCTAACCACAGCAACCCTGCCATTTG
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000000129.14
ENSMUST00000233190.2
CDS TCA 90 bp GACTTGCTTTGTATTGAAGTGGTGATCTATAAGCTGGGGAATGTTTaGAAACCCGGTGCCCTCGAATCGATACAGATTATCGACAAATTG +
Preference number: 5 (lower is better)
Translates to: DLLCIEVVIYKLGNV*KPGALESIQIIDKL
Trigger: CAATTTGTCGATAATCTGTATCGATTCGAGGGCACCGGGTTTTCAAACATTCCCCAGCTTATAGATCACCACTTCAATACAAAGCAAGTC
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000000129.14
ENSMUST00000038080.7
ENSMUST00000232945.2
ENSMUST00000233190.2
CDS-3UTR CAA 90 bp TGGCCTTTACCATTAGTCCTGTGCTTTTCTCTTTACAGCGGTATCAAATGGCAGGCTGACATAATTCACTaGCACAGTGCTTTCTTTATC +
Preference number: 5 (lower is better)
Translates to: WPLPLVLCFSLYSGIKWQADIIH*HSAFFI
Trigger: GATAAAGAAAGCACTGTGCAAGTGAATTATGTCAGC...CTGCCATTTGATACCGCTGTAAAGAGAAAAGCACAGGACTAATGGTAAAGGCCA
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000000129.14
ENSMUST00000233190.2
CDS-3UTR CAA 90 bp AGAAAACAAACATATTCTGCCAGTTTGTGGCTGTCCATGCTTGTTGCTACAAGTTCTGTCTTTGTGACCTaGATCATCTCTGCCTCTATC +
Preference number: 5 (lower is better)
Translates to: RKQTYSASLWLSMLVATSSVFVT*IISASI
Trigger: GATAGAGGCAGAGATGATCAAGGTCACAAAGACAGA...ACTTGTAGCAACAAGCATGGACAGCCACAAACTGGCAGAATATGTTTGTTTTCT
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000232945.2
CDS-3UTR CAA 90 bp AAACCAGAAAACAAACATATTCTGCCAGTTTGTGGCTGTCCATGCTTGTTGCTATTCAAGTGCCTGTTTTaGGCCCAGAAGAAGCACAAT +
Preference number: 5 (lower is better)
Translates to: KPENKHILPVCGCPCLLLFKCLF*AQKKHN
Trigger: ATTGTGCTTCTTCTGGGCCAAAAACAGGCACTTGAA...TAGCAACAAGCATGGACAGCCACAAACTGGCAGAATATGTTTGTTTTCTGGTTT
42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000232945.2
CDS-3UTR CAA 90 bp AGTCCTGTGCTTTTCTCTTTACAGCGGTATCAAATGGCAGGGTTGCTGTGGTTACAGATTATCGACAAATaGTATGATAAAGTGCCTCCT +
Preference number: 5 (lower is better)
Translates to: SPVLFSLQRYQMAGLLWLQIIDK*YDKVPP
Trigger: AGGAGGCACTTTATCATACAATTTGTCGATAATCTG...TAACCACAGCAACCCTGCCATTTGATACCGCTGTAAAGAGAAAAGCACAGGACT
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000000129.14
ENSMUST00000233190.2
CDS TCA 90 bp GATCCGAGTACCGACTTTGGAGACTTAATTATCCCAGCAATTGAATaGCGAATAGACTCAAATTTGGATAGCCTCTCCTTTCTTTCCATG +
Preference number: 5 (lower is better)
Translates to: DPSTDFGDLIIPAIE*RIDSNLDSLSFLSM
Trigger: CATGGAAAGAAAGGAGAGGCTATCCAAATTTGAGTCTATTCGTCATTCAATTGCTGGGATAATTAAGTCTCCAAAGTCGGTACTCGGATC
41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000000129.14
ENSMUST00000232945.2
ENSMUST00000233190.2
CDS TCA 90 bp GATCCGAGTACCGACTTTGGAGACTTAATTATCCCAGCAATTGAATaGCGAATAGACTCAAATTTGGATAGCCTCTCCTTTCTTTCCTTG +
Preference number: 5 (lower is better)
Translates to: DPSTDFGDLIIPAIE*RIDSNLDSLSFLSL
Trigger: CAAGGAAAGAAAGGAGAGGCTATCCAAATTTGAGTCTATTCGTCATTCAATTGCTGGGATAATTAAGTCTCCAAAGTCGGTACTCGGATC
41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000038080.7
CDS-3UTR CAA 90 bp TTGCTGTGGTTAGCTAATACGGCTCTGGGTAGGACTATTTATTTCTTGAATAGACTCTGCCTCTATCTGTaGATGAATGCCTACATAGCT +
Preference number: 5 (lower is better)
Translates to: LLWLANTALGRTIYFLNRLCLYL*MNAYIA
Trigger: AGCTATGTAGGCATTCATCAACAGATAGAGGCAGAG...TCTATTCAAGAAATAAATAGTCCTACCCAGAGCCGTATTAGCTAACCACAGCAA
41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000000129.14
CDS-3UTR CAA 90 bp AACCAGAAAACAAACATATTCTGCCAGTTTGTGGCTGTCCATGCTTGTTGCTACATTTTCCTGTACTTTTaGCTCCAGCAAAGCTTTCTG +
Preference number: 5 (lower is better)
Translates to: NQKTNIFCQFVAVHACCYIFLYF*LQQSFL
Trigger: CAGAAAGCTTTGCTGGAGCAAAAAGTACAGGAAAAT...GTAGCAACAAGCATGGACAGCCACAAACTGGCAGAATATGTTTGTTTTCTGGTT
41% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 1 transcripts:
ENSMUST00000232945.2
CDS-3UTR CAA 90 bp AACCAGAAAACAAACATATTCTGCCAGTTTGTGGCTGTCCATGCTTGTTGCTACCGAATAGACTCAAATTaGGATAGCCTCTCCTTTCTT +
Preference number: 5 (lower is better)
Translates to: NQKTNIFCQFVAVHACCYRIDSN*DSLSFL
Trigger: AAGAAAGGAGAGGCTATCCAAATTTGAGTCTATTCG...GTAGCAACAAGCATGGACAGCCACAAACTGGCAGAATATGTTTGTTTTCTGGTT
41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000232945.2
CDS-3UTR CAA 90 bp AAACCAGAAAACAAACATATTCTGCCAGTTTGTGGCTGTCCATGCTTGTTGCTACTTCTTGGTGATGACTaGCTTTGTATTGAAGTGGTG +
Preference number: 5 (lower is better)
Translates to: KPENKHILPVCGCPCLLLLLGDD*LCIEVV
Trigger: CACCACTTCAATACAAAGCAAGTCATCACCAAGAAG...TAGCAACAAGCATGGACAGCCACAAACTGGCAGAATATGTTTGTTTTCTGGTTT
41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000232945.2
CDS GCA 90 bp GTGCCCTCGAATCGATACAGATTATCGACAAATTGTATGATAAAGTaGCTCCTTTGTCCGTCAGAATATACAGAAAGGACATATTCACCA +
Preference number: 5 (lower is better)
Translates to: VPSNRYRLSTNCMIK*LLCPSEYTERTYSP
Trigger: TGGTGAATATGTCCTTTCTGTATATTCTGACGGACAAAGGAGGCACTTTATCATACAATTTGTCGATAATCTGTATCGATTCGAGGGCAC
40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000000129.14
ENSMUST00000038080.7
ENSMUST00000232945.2
ENSMUST00000233190.2
CDS-3UTR CAA 90 bp AAACCAGAAAACAAACATATTCTGCCAGTTTGTGGCTGTCCATGCTTGTTGCTAGCTGACATAATTCACTaGCACAGTGCTTTCTTTATC +
Preference number: 5 (lower is better)
Translates to: KPENKHILPVCGCPCLLLADIIH*HSAFFI
Trigger: GATAAAGAAAGCACTGTGCAAGTGAATTATGTCAGC...TAGCAACAAGCATGGACAGCCACAAACTGGCAGAATATGTTTGTTTTCTGGTTT
40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000232945.2
CDS-3UTR CAA 90 bp AACCAGAAAACAAACATATTCTGCCAGTTTGTGGCTGTCCATGCTTGTTGCTACCAGATTATCGACAAATaGTATGATAAAGTGCCTCCT +
Preference number: 5 (lower is better)
Translates to: NQKTNIFCQFVAVHACCYQIIDK*YDKVPP
Trigger: AGGAGGCACTTTATCATACAATTTGTCGATAATCTG...GTAGCAACAAGCATGGACAGCCACAAACTGGCAGAATATGTTTGTTTTCTGGTT
40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000232945.2
CDS-3UTR CAA 90 bp TTTTCTTTGGCCTTTACCATTAGTCCTGTGCTTTTCTCTTTACAGCGGTATCAACTTCTTGGTGATGACTaGCTTTGTATTGAAGTGGTG +
Preference number: 5 (lower is better)
Translates to: FSLAFTISPVLFSLQRYQLLGDD*LCIEVV
Trigger: CACCACTTCAATACAAAGCAAGTCATCACCAAGAAG...TTGATACCGCTGTAAAGAGAAAAGCACAGGACTAATGGTAAAGGCCAAAGAAAA
40% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000000129.14
ENSMUST00000233190.2
CDS-3UTR CAA 90 bp TTGCTGTGGTTAGCTAATACGGCTCTGGGTAGGACTATTTATTTCTTGAATAGAGCTGACATAATTCACTaGCACAGTGCTTTCTTTATC +
Preference number: 5 (lower is better)
Translates to: LLWLANTALGRTIYFLNRADIIH*HSAFFI
Trigger: GATAAAGAAAGCACTGTGCAAGTGAATTATGTCAGC...TCTATTCAAGAAATAAATAGTCCTACCCAGAGCCGTATTAGCTAACCACAGCAA
39% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000000129.14
ENSMUST00000233190.2
CDS-3UTR CAA 90 bp CACCGTTTTTACTCCAAGAATTTTAATTACAGCCACAAATACTTTCCGTATTCCTTCTTCACTTGCTGCTaGTCCTTGATCATCATGGTG +
Preference number: 5 (lower is better)
Translates to: HRFYSKNFNYSHKYFPYSFFTCC*SLIIMV
Trigger: CACCATGATGATCAAGGACAAGCAGCAAGTGAAGAA...GGAATACGGAAAGTATTTGTGGCTGTAATTAAAATTCTTGGAGTAAAAACGGTG
39% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000232945.2
CDS-3UTR CAA 90 bp CACCGTTTTTACTCCAAGAATTTTAATTACAGCCACAAATACTTTCCGTATTCCGATAAAGTGCCTCCTTaGTCCGTCAGAATATACAGA +
Preference number: 5 (lower is better)
Translates to: HRFYSKNFNYSHKYFPYSDKVPP*SVRIYR
Trigger: TCTGTATATTCTGACGGACAAAGGAGGCACTTTATC...GGAATACGGAAAGTATTTGTGGCTGTAATTAAAATTCTTGGAGTAAAAACGGTG
38% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000232945.2
CDS-3UTR CAA 90 bp TTTTCTTTGGCCTTTACCATTAGTCCTGTGCTTTTCTCTTTACAGCGGTATCAACAGATTATCGACAAATaGTATGATAAAGTGCCTCCT +
Preference number: 5 (lower is better)
Translates to: FSLAFTISPVLFSLQRYQQIIDK*YDKVPP
Trigger: AGGAGGCACTTTATCATACAATTTGTCGATAATCTG...TTGATACCGCTGTAAAGAGAAAAGCACAGGACTAATGGTAAAGGCCAAAGAAAA
38% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000000129.14
ENSMUST00000233190.2
CDS CCA 72 bp AGCAGTTCCTGTGCCTCTATCCTGGGGATGGCACCATaGTACCAGTCATGCTCCGCCAGGGGCCTCTCACCC +
Preference number: 6 (lower is better)
Translates to: SSSCASILGMAP*YQSCSARGLSP
Trigger: GGGTGAGAGGCCCCTGGCGGAGCATGACTGGTACCATGGTGCCATCCCCAGGATAGAGGCACAGGAACTGCT
62% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000000129.14
ENSMUST00000038080.7
ENSMUST00000232945.2
ENSMUST00000233190.2
CDS CCA 72 bp GCTGCTTCAGCAGTTCCTGTGCCTCTATCCTGGGGATaGCACCATGGTACCAGTCATGCTCCGCCAGGGGCC +
Preference number: 6 (lower is better)
Translates to: AASAVPVPLSWG*HHGTSHAPPGA
Trigger: GGCCCCTGGCGGAGCATGACTGGTACCATGGTGCCATCCCCAGGATAGAGGCACAGGAACTGCTGAAGCAGC
62% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000000129.14
ENSMUST00000038080.7
ENSMUST00000232945.2
ENSMUST00000233190.2
CDS GCA 72 bp GCCTCTATCCTGGGGATGGCACCATGGTACCAGTCATaGTCCGCCAGGGGCCTCTCACCCACAGAGATCACA +
Preference number: 6 (lower is better)
Translates to: ASILGMAPWYQS*SARGLSPTEIT
Trigger: TGTGATCTCTGTGGGTGAGAGGCCCCTGGCGGAGCATGACTGGTACCATGGTGCCATCCCCAGGATAGAGGC
61% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000000129.14
ENSMUST00000038080.7
ENSMUST00000232945.2
ENSMUST00000233190.2
CDS CCA 72 bp CTCCTTGCTGCTTCAGCAGTTCCTGTGCCTCTATCCTaGGGATGGCACCATGGTACCAGTCATGCTCCGCCA +
Preference number: 6 (lower is better)
Translates to: LLAASAVPVPLS*GWHHGTSHAPP
Trigger: TGGCGGAGCATGACTGGTACCATGGTGCCATCCCCAGGATAGAGGCACAGGAACTGCTGAAGCAGCAAGGAG
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000000129.14
ENSMUST00000038080.7
ENSMUST00000232945.2
ENSMUST00000233190.2
CDS GCA 72 bp AGCTCCAGGACGGCCGCCTCCTTGTGTAAAAGCATCTaGTGGGTCTGTGTGAGCTCTTCCGCTAAAGTCTTC +
Preference number: 6 (lower is better)
Translates to: SSRTAASLCKSI*WVCVSSSAKVF
Trigger: GAAGACTTTAGCGGAAGAGCTCACACAGACCCAGCAGATGCTTTTACACAAGGAGGCGGCCGTCCTGGAGCT
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000000129.14
ENSMUST00000232945.2
ENSMUST00000233190.2
CDS GCA 72 bp ATGCCAGCAGCAACGTCCAAGGAAAATCTCACCAACTaGTTCAGCTTCAGCTCGTCCTTCCTCTTCCTCAGG +
Preference number: 6 (lower is better)
Translates to: MPAATSKENLTN*FSFSSSFLFLR
Trigger: CCTGAGGAAGAGGAAGGACGAGCTGAAGCTGAAGCAGTTGGTGAGATTTTCCTTGGACGTTGCTGCTGGCAT
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000000129.14
ENSMUST00000038080.7
ENSMUST00000233190.2
CDS GCA 72 bp ACTTGCTGCTTGTCCTTGATCATCATGGTGAGCCTGTaGAAGGGTCCAGAGTTCAAGTCCTCTGCATGTGTC +
Preference number: 6 (lower is better)
Translates to: TCCLSLIIMVSL*KGPEFKSSACV
Trigger: GACACATGCAGAGGACTTGAACTCTGGACCCTTGCACAGGCTCACCATGATGATCAAGGACAAGCAGCAAGT
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000000129.14
ENSMUST00000232945.2
ENSMUST00000233225.2
CDS TCA 72 bp TGCACACTTTGCCTCAGTGCATCGCAACTGCTGGACTaGCTGTTTCAACTCTTCAAGTGCCTGTTTTTGGCC +
Preference number: 6 (lower is better)
Translates to: CTLCLSASQLLD*LFQLFKCLFLA
Trigger: GGCCAAAAACAGGCACTTGAAGAGTTGAAACAGTCAGTCCAGCAGTTGCGATGCACTGAGGCAAAGTGTGCA
50% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000000129.14
ENSMUST00000232945.2
ENSMUST00000233190.2
CDS GCA 72 bp TTCTGTGCTGCACACTTTGCCTCAGTGCATCGCAACTaGTGGACTGACTGTTTCAACTCTTCAAGTGCCTGT +
Preference number: 6 (lower is better)
Translates to: FCAAHFASVHRN*WTDCFNSSSAC
Trigger: ACAGGCACTTGAAGAGTTGAAACAGTCAGTCCAGCAGTTGCGATGCACTGAGGCAAAGTGTGCAGCACAGAA
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000000129.14
ENSMUST00000232945.2
ENSMUST00000233190.2
CDS GCA 72 bp CCAGCAAAGCTTTCTGTGCTGCACACTTTGCCTCAGTaGATCGCAACTGCTGGACTGACTGTTTCAACTCTT +
Preference number: 6 (lower is better)
Translates to: PAKLSVLHTLPQ*IATAGLTVSTL
Trigger: AAGAGTTGAAACAGTCAGTCCAGCAGTTGCGATGCACTGAGGCAAAGTGTGCAGCACAGAAAGCTTTGCTGG
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000000129.14
ENSMUST00000232945.2
ENSMUST00000233190.2
CDS CAA 90 bp CTCTGCCTCTATCTGTTGATGAATGCCTACATAGCTCTTCTTCACTaGCTGCTTGTCCTTGATCATCATGGTGAGCCTGTGCAAGGGTCC +
Preference number: 6 (lower is better)
Translates to: LCLYLLMNAYIALLH*LLVLDHHGEPVQGS
Trigger: GGACCCTTGCACAGGCTCACCATGATGATCAAGGACAAGCAGCAAGTGAAGAAGAGCTATGTAGGCATTCATCAACAGATAGAGGCAGAG
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000000129.14
ENSMUST00000232945.2
ENSMUST00000233225.2
CDS CCA 72 bp TGTGCTGCACACTTTGCCTCAGTGCATCGCAACTGCTaGACTGACTGTTTCAACTCTTCAAGTGCCTGTTTT +
Preference number: 6 (lower is better)
Translates to: CAAHFASVHRNC*TDCFNSSSACF
Trigger: AAAACAGGCACTTGAAGAGTTGAAACAGTCAGTCCAGCAGTTGCGATGCACTGAGGCAAAGTGTGCAGCACA
49% GC, longest homopolymer 4 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000000129.14
ENSMUST00000232945.2
ENSMUST00000233190.2
CDS CAA 90 bp TTTCCTGTACTTTTTGCTCCAGCAAAGCTTTCTGTGCTGCACACTTaGCCTCAGTGCATCGCAACTGCTGGACTGACTGTTTCAACTCTT +
Preference number: 6 (lower is better)
Translates to: FPVLFAPAKLSVLHT*PQCIATAGLTVSTL
Trigger: AAGAGTTGAAACAGTCAGTCCAGCAGTTGCGATGCACTGAGGCAAAGTGTGCAGCACAGAAAGCTTTGCTGGAGCAAAAAGTACAGGAAA
47% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000000129.14
ENSMUST00000232945.2
ENSMUST00000233190.2
CDS CAA 90 bp ATTCACCACAGGAGGTGGTTCTTTCCCATCATTTTCCTGTACTTTTaGCTCCAGCAAAGCTTTCTGTGCTGCACACTTTGCCTCAGTGCA +
Preference number: 6 (lower is better)
Translates to: IHHRRWFFPIIFLYF*LQQSFLCCTLCLSA
Trigger: TGCACTGAGGCAAAGTGTGCAGCACAGAAAGCTTTGCTGGAGCAAAAAGTACAGGAAAATGATGGGAAAGAACCACCTCCTGTGGTGAAT
47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000000129.14
ENSMUST00000232945.2
ENSMUST00000233190.2
CDS TCA 72 bp CAAATTTGGATAGCCTCTCCTTTCTTTCCATGGATGTaGCTGACCGCGCGTCTTCTTCGTAATTCACCACAG +
Preference number: 6 (lower is better)
Translates to: QIWIASPFFPWM*LTARLLRNSPQ
Trigger: CTGTGGTGAATTACGAAGAAGACGCGCGGTCAGTCACATCCATGGAAAGAAAGGAGAGGCTATCCAAATTTG
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000000129.14
ENSMUST00000232945.2
ENSMUST00000233190.2
CDS GCA 72 bp TTCTTCACTGTCTCCAGCAACCGTAGTTCCCAGTCTTaGAACTTTAACACAGCTTCCTGTGAGTTCTTCAGG +
Preference number: 6 (lower is better)
Translates to: FFTVSSNRSSQS*NFNTASCEFFR
Trigger: CCTGAAGAACTCACAGGAAGCTGTGTTAAAGTTGCAAGACTGGGAACTACGGTTGCTGGAGACAGTGAAGAA
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000000129.14
ENSMUST00000232945.2
ENSMUST00000233190.2
CDS CAA 72 bp GTTGAGCAGAACCACCCCAGACTTCTTGGTGATGACTaGCTTTGTATTGAAGTGGTGATCTATAAGCTGGGG +
Preference number: 6 (lower is better)
Translates to: VEQNHPRLLGDD*LCIEVVIYKLG
Trigger: CCCCAGCTTATAGATCACCACTTCAATACAAAGCAAGTCATCACCAAGAAGTCTGGGGTGGTTCTGCTCAAC
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000000129.14
ENSMUST00000038080.7
ENSMUST00000232945.2
ENSMUST00000233190.2
CDS CAA 90 bp ATCACCCCCTGGGACCAGTTCCATAATGATGTAGACAGGCTGTCTTaGTGTGCACACGCCTATCAGTTTGACAATATTGGGATGATCATA +
Preference number: 6 (lower is better)
Translates to: ITPWDQFHNDVDRLS*CAHAYQFDNIGMII
Trigger: TATGATCATCCCAATATTGTCAAACTGATAGGCGTGTGCACACAAAGACAGCCTGTCTACATCATTATGGAACTGGTCCCAGGGGGTGAT
46% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000000129.14
ENSMUST00000038080.7
ENSMUST00000233190.2
CDS TCA 72 bp CCTCTCACCCACAGAGATCACATCACACACCTGTGTTaGAGATCCGAGTACCGACTTTGGAGACTTAATTAT +
Preference number: 6 (lower is better)
Translates to: PLTHRDHITHLC*RSEYRLWRLNY
Trigger: ATAATTAAGTCTCCAAAGTCGGTACTCGGATCTTCAACACAGGTGTGTGATGTGATCTCTGTGGGTGAGAGG
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000000129.14
ENSMUST00000233190.2
CDS CAA 72 bp TGGGACCAGTTCCATAATGATGTAGACAGGCTGTCTTaGTGTGCACACGCCTATCAGTTTGACAATATTGGG +
Preference number: 6 (lower is better)
Translates to: WDQFHNDVDRLS*CAHAYQFDNIG
Trigger: CCCAATATTGTCAAACTGATAGGCGTGTGCACACAAAGACAGCCTGTCTACATCATTATGGAACTGGTCCCA
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000000129.14
ENSMUST00000038080.7
ENSMUST00000232945.2
ENSMUST00000233190.2
CDS CAA 90 bp GGCATTACCTGGGACCAGTTCCATAATGATGTAGACAGGCTGTCTTaGTGTGCACACGCCTATCAGTTTGACAATATTGGGATGATCATA +
Preference number: 6 (lower is better)
Translates to: GITWDQFHNDVDRLS*CAHAYQFDNIGMII
Trigger: TATGATCATCCCAATATTGTCAAACTGATAGGCGTGTGCACACAAAGACAGCCTGTCTACATCATTATGGAACTGGTCCCAGGTAATGCC
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000232945.2
CDS CAA 72 bp CCCGGTGCCCTCGAATCGATACAGATTATCGACAAATaGTATGATAAAGTGCCTCCTTTGTCCGTCAGAATA +
Preference number: 6 (lower is better)
Translates to: PGALESIQIIDK*YDKVPPLSVRI
Trigger: TATTCTGACGGACAAAGGAGGCACTTTATCATACAATTTGTCGATAATCTGTATCGATTCGAGGGCACCGGG
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000000129.14
ENSMUST00000038080.7
ENSMUST00000232945.2
ENSMUST00000233190.2
CDS CAA 90 bp CTCCAATTCTGTCTTTGTGACCTTGATCATCTCTGCCTCTATCTGTaGATGAATGCCTACATAGCTCTTCTTCACTTGCTGCTTGTCCTT +
Preference number: 6 (lower is better)
Translates to: LQFCLCDLDHLCLYL*MNAYIALLHLLLVL
Trigger: AAGGACAAGCAGCAAGTGAAGAAGAGCTATGTAGGCATTCATCAACAGATAGAGGCAGAGATGATCAAGGTCACAAAGACAGAATTGGAG
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000000129.14
ENSMUST00000232945.2
ENSMUST00000233225.2
CDS TCA 72 bp TGTATTGAAGTGGTGATCTATAAGCTGGGGAATGTTTaGAAACCCGGTGCCCTCGAATCGATACAGATTATC +
Preference number: 6 (lower is better)
Translates to: CIEVVIYKLGNV*KPGALESIQII
Trigger: GATAATCTGTATCGATTCGAGGGCACCGGGTTTTCAAACATTCCCCAGCTTATAGATCACCACTTCAATACA
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000000129.14
ENSMUST00000038080.7
ENSMUST00000232945.2
ENSMUST00000233190.2
CDS TCA 72 bp GACTTCTTGGTGATGACTTGCTTTGTATTGAAGTGGTaGTCTATAAGCTGGGGAATGTTTGAAAACCCGGTG +
Preference number: 6 (lower is better)
Translates to: DFLVMTCFVLKW*SISWGMFENPV
Trigger: CACCGGGTTTTCAAACATTCCCCAGCTTATAGATCACCACTTCAATACAAAGCAAGTCATCACCAAGAAGTC
43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000000129.14
ENSMUST00000038080.7
ENSMUST00000232945.2
ENSMUST00000233190.2
CDS CAA 72 bp TGTCTTTGTGACCTTGATCATCTCTGCCTCTATCTGTaGATGAATGCCTACATAGCTCTTCTTCACTTGCTG +
Preference number: 6 (lower is better)
Translates to: CLCDLDHLCLYL*MNAYIALLHLL
Trigger: CAGCAAGTGAAGAAGAGCTATGTAGGCATTCATCAACAGATAGAGGCAGAGATGATCAAGGTCACAAAGACA
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000000129.14
ENSMUST00000232945.2
ENSMUST00000233225.2
CDS TCA 72 bp GCTGAATCATCAGTAGCCAAGACTTGGACACGTTGCTaGCATAATTCACTTGCACAGTGCTTTCTTTATCAA +
Preference number: 6 (lower is better)
Translates to: AESSVAKTWTRC*HNSLAQCFLYQ
Trigger: TTGATAAAGAAAGCACTGTGCAAGTGAATTATGTCAGCAACGTGTCCAAGTCTTGGCTACTGATGATTCAGC
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000000129.14
ENSMUST00000232945.2
CDS GCA 72 bp TTTCTCCAATTCTGTCTTTGTGACCTTGATCATCTCTaGCTCTATCTGTTGATGAATGCCTACATAGCTCTT +
Preference number: 6 (lower is better)
Translates to: FLQFCLCDLDHL*LYLLMNAYIAL
Trigger: AAGAGCTATGTAGGCATTCATCAACAGATAGAGGCAGAGATGATCAAGGTCACAAAGACAGAATTGGAGAAA
40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000000129.14
ENSMUST00000232945.2
ENSMUST00000233225.2
CDS GCA 72 bp TGTGTGAGCTCTTCCGCTAAAGTCTTCAACATGACTTaGAAACTGTCTGCTGTTAAATTATTCCACATGATC +
Preference number: 6 (lower is better)
Translates to: CVSSSAKVFNMT*KLSAVKLFHMI
Trigger: GATCATGTGGAATAATTTAACAGCAGACAGTTTGCAAGTCATGTTGAAGACTTTAGCGGAAGAGCTCACACA
40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000000129.14
ENSMUST00000232945.2
ENSMUST00000233190.2
CDS CAA 90 bp GAATCGATACAGATTATCGACAAATTGTATGATAAAGTGCCTCCTTaGTCCGTCAGAATATACAGAAAGGACATATTCACCAGGTTTCCC +
Preference number: 6 (lower is better)
Translates to: ESIQIIDKLYDKVPP*SVRIYRKDIFTRFP
Trigger: GGGAAACCTGGTGAATATGTCCTTTCTGTATATTCTGACGGACAAAGGAGGCACTTTATCATACAATTTGTCGATAATCTGTATCGATTC
39% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000000129.14
ENSMUST00000038080.7
ENSMUST00000232945.2
ENSMUST00000233190.2
CDS CAA 72 bp CAGATTATCGACAAATTGTATGATAAAGTGCCTCCTTaGTCCGTCAGAATATACAGAAAGGACATATTCACC +
Preference number: 6 (lower is better)
Translates to: QIIDKLYDKVPP*SVRIYRKDIFT
Trigger: GGTGAATATGTCCTTTCTGTATATTCTGACGGACAAAGGAGGCACTTTATCATACAATTTGTCGATAATCTG
38% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000000129.14
ENSMUST00000038080.7
ENSMUST00000232945.2
ENSMUST00000233190.2
CDS CAA 90 bp GAAATTATTATATTCGGTGCTAGGGTCTATCTGTTCAACAGACATTaGAATCTCTTTATGGACATTCACTATTTCCTCTGTAACAAGGCT +
Preference number: 6 (lower is better)
Translates to: EIIIFGARVYLFNRH*NLFMDIHYFLCNKA
Trigger: AGCCTTGTTACAGAGGAAATAGTGAATGTCCATAAAGAGATTCAAATGTCTGTTGAACAGATAGACCCTAGCACCGAATATAATAATTTC
36% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000000129.14
ENSMUST00000232945.2
ENSMUST00000233190.2
CDS GCA 72 bp AATCGATACAGATTATCGACAAATTGTATGATAAAGTaGCTCCTTTGTCCGTCAGAATATACAGAAAGGACA +
Preference number: 6 (lower is better)
Translates to: NRYRLSTNCMIK*LLCPSEYTERT
Trigger: TGTCCTTTCTGTATATTCTGACGGACAAAGGAGGCACTTTATCATACAATTTGTCGATAATCTGTATCGATT
36% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000000129.14
ENSMUST00000038080.7
ENSMUST00000232945.2
ENSMUST00000233190.2