RADAR | Search for sensor designs | Human genes | Mouse genes | Code

Pregenerated sensors for FEM1AL (Mus musculus)

Ensembl gene IDs: ENSMUSG00000078157

Ensembl transcript IDs: ENSMUST00000104962.2

Found 68 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).

Type Sensor Details
3UTR CCA 90 bp GGCCTGATGGCCATCTGCCTGGCAGTTCCAGCTGCATCCCAAGGTTaGGAACTGTCCGTCCATCCAGAGGGCGGGACAGGAGGCACTGGT +
Preference number: 1 (lower is better)
Translates to: GLMAICLAVPAASQG*ELSVHPEGGTGGTG
Trigger: ACCAGTGCCTCCTGTCCCGCCCTCTGGATGGACGGACAGTTCCCAACCTTGGGATGCAGCTGGAACTGCCAGGCAGATGGCCATCAGGCC
63% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000104962.2
3UTR TCA 90 bp GTCCTCAGCGATGATGGTGACAGTGTGACAAGTGTGGCACAGATGTaGACCTGGTGGCCAGGTGGCCTGATGGCCATCTGCCTGGCAGTT +
Preference number: 1 (lower is better)
Translates to: VLSDDGDSVTSVAQM*TWWPGGLMAICLAV
Trigger: AACTGCCAGGCAGATGGCCATCAGGCCACCTGGCCACCAGGTTCACATCTGTGCCACACTTGTCACACTGTCACCATCATCGCTGAGGAC
58% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000104962.2
3UTR CCA 90 bp CTTCTAGAATCAGCAGCTGGGTTCACTCCAGCAGGCCATAGGGCCTaGATGCTTCTGCTTGGAGAAGTAAGGCCCAAGTGGGCACCAGCA +
Preference number: 1 (lower is better)
Translates to: LLESAAGFTPAGHRA*MLLLGEVRPKWAPA
Trigger: TGCTGGTGCCCACTTGGGCCTTACTTCTCCAAGCAGAAGCATCCAGGCCCTATGGCCTGCTGGAGTGAACCCAGCTGCTGATTCTAGAAG
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000104962.2
3UTR GCA 90 bp CTGCTTAGAAAAGGAAAAACCAACTGCAAACATCTAGGTGGTCAGTaGCCACTGCAGGAAGGAGACAGCTTTGCTCACTGCAGGACTCTA +
Preference number: 1 (lower is better)
Translates to: LLRKGKTNCKHLGGQ*PLQEGDSFAHCRTL
Trigger: TAGAGTCCTGCAGTGAGCAAAGCTGTCTCCTTCCTGCAGTGGGCACTGACCACCTAGATGTTTGCAGTTGGTTTTTCCTTTTCTAAGCAG
49% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000104962.2
3UTR GCA 90 bp CACAGATCTGCACACACAGTTCATGCCGTTCTCAGCTGTGGCCACTaGAAAGTACTGACAACTCCCAACTCAGTCATTACTAAGTCCAAC +
Preference number: 1 (lower is better)
Translates to: HRSAHTVHAVLSCGH*KVLTTPNSVITKSN
Trigger: GTTGGACTTAGTAATGACTGAGTTGGGAGTTGTCAGTACTTTGCAGTGGCCACAGCTGAGAACGGCATGAACTGTGTGTGCAGATCTGTG
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000104962.2
3UTR CAA 90 bp TGGCCTGATGGCCATCTGCCTGGCAGTTCCAGCTGCATCCCAAGGTaGGGAACTGTCCGTCCATCCAGAGGGCGGGACAGGAGGCACTGG +
Preference number: 2 (lower is better)
Translates to: WPDGHLPGSSSCIPR*GTVRPSRGRDRRHW
Trigger: CCAGTGCCTCCTGTCCCGCCCTCTGGATGGACGGACAGTTCCCAACCTTGGGATGCAGCTGGAACTGCCAGGCAGATGGCCATCAGGCCA
63% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000104962.2
3UTR-3UTR GCA 90 bp ACGTGGGCCAAGCTAGTACCACATGGGTCCATCACTGCCCTGGCTGGCAGTCCCGACAGCTTTGCTCACTaGAGGACTCTAGGACAGTGC +
Preference number: 2 (lower is better)
Translates to: TWAKLVPHGSITALAGSPDSFAH*RTLGQC
Trigger: GCACTGTCCTAGAGTCCTGCAGTGAGCAAAGCTGTC...GGGACTGCCAGCCAGGGCAGTGATGGACCCATGTGGTACTAGCTTGGCCCACGT
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000104962.2
3UTR-3UTR GCA 90 bp ACGTGGGCCAAGCTAGTACCACATGGGTCCATCACTGCCCTGGCTGGCAGTCCCCCTTGGTCACAGATCTaGACACACAGTTCATGCCGT +
Preference number: 2 (lower is better)
Translates to: TWAKLVPHGSITALAGSPPWSQI*THSSCR
Trigger: ACGGCATGAACTGTGTGTGCAGATCTGTGACCAAGG...GGGACTGCCAGCCAGGGCAGTGATGGACCCATGTGGTACTAGCTTGGCCCACGT
58% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000104962.2
3UTR-3UTR GCA 90 bp CTGCCTGGCAGTTCCAGCTGCATCCCAAGGTTGGGAACTGTCCGTCCATCCAGACTCAGCTGTGGCCACTaGAAAGTACTGACAACTCCC +
Preference number: 2 (lower is better)
Translates to: LPGSSSCIPRLGTVRPSRLSCGH*KVLTTP
Trigger: GGGAGTTGTCAGTACTTTGCAGTGGCCACAGCTGAG...TCTGGATGGACGGACAGTTCCCAACCTTGGGATGCAGCTGGAACTGCCAGGCAG
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000104962.2
3UTR-3UTR CCA 90 bp ATGGCCATCTGCCTGGCAGTTCCAGCTGCATCCCAAGGTTGGGAACTGTCCGTCCTGGATGCTTCTGCTTaGAGAAGTAAGGCCCAAGTG +
Preference number: 2 (lower is better)
Translates to: MAICLAVPAASQGWELSVLDASA*RSKAQV
Trigger: CACTTGGGCCTTACTTCTCCAAGCAGAAGCATCCAG...GACGGACAGTTCCCAACCTTGGGATGCAGCTGGAACTGCCAGGCAGATGGCCAT
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000104962.2
3UTR CAA 90 bp GTCCTCTCTCTAATCAGCACAGAAATGAGGAGCCTTCCCAGGACCTaGGTCACAGATCTGCACACACAGTTCATGCCGTTCTCAGCTGTG +
Preference number: 2 (lower is better)
Translates to: VLSLISTEMRSLPRT*VTDLHTQFMPFSAV
Trigger: CACAGCTGAGAACGGCATGAACTGTGTGTGCAGATCTGTGACCAAGGTCCTGGGAAGGCTCCTCATTTCTGTGCTGATTAGAGAGAGGAC
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000104962.2
3UTR-3UTR GCA 90 bp ACATTTGTCAAGTGTGACTTTACTGGCTGCCTGGAACAGAATGACCTGGAGGAACATCTAGGTGGTCAGTaGCCACTGCAGGAAGGAGAC +
Preference number: 2 (lower is better)
Translates to: TFVKCDFTGCLEQNDLEEHLGGQ*PLQEGD
Trigger: GTCTCCTTCCTGCAGTGGGCACTGACCACCTAGATG...TTCCTCCAGGTCATTCTGTTCCAGGCAGCCAGTAAAGTCACACTTGACAAATGT
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000104962.2
3UTR-3UTR CCA 90 bp TGTGGCCACTGCAAAGTACTGACAACTCCCAACTCAGTCATTACTAAGTCCAACAAACCCTCACAAACATaGGCTCCAGGTTGCTGCCCA +
Preference number: 2 (lower is better)
Translates to: CGHCKVLTTPNSVITKSNKPSQT*APGCCP
Trigger: TGGGCAGCAACCTGGAGCCCATGTTTGTGAGGGTTT...GTTGGACTTAGTAATGACTGAGTTGGGAGTTGTCAGTACTTTGCAGTGGCCACA
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000104962.2
3UTR-3UTR CCA 90 bp ACATTTGTCAAGTGTGACTTTACTGGCTGCCTGGAACAGAATGACCTGGAGGAAATCCCCAGAAGTTATTaGGATACTGGGGACTCCTCA +
Preference number: 2 (lower is better)
Translates to: TFVKCDFTGCLEQNDLEEIPRSY*DTGDSS
Trigger: TGAGGAGTCCCCAGTATCCCAATAACTTCTGGGGAT...TTCCTCCAGGTCATTCTGTTCCAGGCAGCCAGTAAAGTCACACTTGACAAATGT
47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000104962.2
3UTR CCA 72 bp CACACAGGGCCTCACGTGGGCCAAGCTAGTACCACATaGGTCCATCACTGCCCTGGCTGGCAGTCCCCCACC +
Preference number: 3 (lower is better)
Translates to: HTGPHVGQASTT*VHHCPGWQSPT
Trigger: GGTGGGGGACTGCCAGCCAGGGCAGTGATGGACCCATGTGGTACTAGCTTGGCCCACGTGAGGCCCTGTGTG
65% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000104962.2
3UTR GCA 72 bp CACGTGGGCCAAGCTAGTACCACATGGGTCCATCACTaGCCTGGCTGGCAGTCCCCCACCTCCCCCTATCTT +
Preference number: 3 (lower is better)
Translates to: HVGQASTTWVHH*PGWQSPTSPYL
Trigger: AAGATAGGGGGAGGTGGGGGACTGCCAGCCAGGGCAGTGATGGACCCATGTGGTACTAGCTTGGCCCACGTG
62% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 1 transcripts:
ENSMUST00000104962.2
3UTR CCA 72 bp ACTGTCCGTCCATCCAGAGGGCGGGACAGGAGGCACTaGTGTATGCCTGGCTGTGGCTCTTGCAACTGCCTC +
Preference number: 3 (lower is better)
Translates to: TVRPSRGRDRRH*CMPGCGSCNCL
Trigger: GAGGCAGTTGCAAGAGCCACAGCCAGGCATACACCAGTGCCTCCTGTCCCGCCCTCTGGATGGACGGACAGT
62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000104962.2
3UTR CCA 72 bp GCCATCTGCCTGGCAGTTCCAGCTGCATCCCAAGGTTaGGAACTGTCCGTCCATCCAGAGGGCGGGACAGGA +
Preference number: 3 (lower is better)
Translates to: AICLAVPAASQG*ELSVHPEGGTG
Trigger: TCCTGTCCCGCCCTCTGGATGGACGGACAGTTCCCAACCTTGGGATGCAGCTGGAACTGCCAGGCAGATGGC
62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000104962.2
3UTR-3UTR CAA 90 bp CTGCCTGGCAGTTCCAGCTGCATCCCAAGGTTGGGAACTGTCCGTCCATCCAGAGCCTGGCTGTGGCTCTaGCAACTGCCTCTGGGCTTT +
Preference number: 3 (lower is better)
Translates to: LPGSSSCIPRLGTVRPSRAWLWL*QLPLGF
Trigger: AAAGCCCAGAGGCAGTTGCAAGAGCCACAGCCAGGC...TCTGGATGGACGGACAGTTCCCAACCTTGGGATGCAGCTGGAACTGCCAGGCAG
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000104962.2
3UTR GCA 72 bp CAGTGCCCACTGCAGGAAGGAGACAGCTTTGCTCACTaGAGGACTCTAGGACAGTGCAGAGGCCTCCAGACC +
Preference number: 3 (lower is better)
Translates to: QCPLQEGDSFAH*RTLGQCRGLQT
Trigger: GGTCTGGAGGCCTCTGCACTGTCCTAGAGTCCTGCAGTGAGCAAAGCTGTCTCCTTCCTGCAGTGGGCACTG
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000104962.2
3UTR GCA 72 bp AGGTGGTCAGTGCCCACTGCAGGAAGGAGACAGCTTTaGTCACTGCAGGACTCTAGGACAGTGCAGAGGCCT +
Preference number: 3 (lower is better)
Translates to: RWSVPTAGRRQL*SLQDSRTVQRP
Trigger: AGGCCTCTGCACTGTCCTAGAGTCCTGCAGTGAGCAAAGCTGTCTCCTTCCTGCAGTGGGCACTGACCACCT
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000104962.2
3UTR CCA 72 bp TCAGCAGCTGGGTTCACTCCAGCAGGCCATAGGGCCTaGATGCTTCTGCTTGGAGAAGTAAGGCCCAAGTGG +
Preference number: 3 (lower is better)
Translates to: SAAGFTPAGHRA*MLLLGEVRPKW
Trigger: CCACTTGGGCCTTACTTCTCCAAGCAGAAGCATCCAGGCCCTATGGCCTGCTGGAGTGAACCCAGCTGCTGA
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000104962.2
3UTR CCA 72 bp TTTTTGTGGTTCTGGGGCTGCACACAGGGCCTCACGTaGGCCAAGCTAGTACCACATGGGTCCATCACTGCC +
Preference number: 3 (lower is better)
Translates to: FLWFWGCTQGLT*AKLVPHGSITA
Trigger: GGCAGTGATGGACCCATGTGGTACTAGCTTGGCCCACGTGAGGCCCTGTGTGCAGCCCCAGAACCACAAAAA
58% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000104962.2
3UTR-3UTR CAA 90 bp ATGGCCATCTGCCTGGCAGTTCCAGCTGCATCCCAAGGTTGGGAACTGTCCGTCTGCCTCTGGGCTTTCTaGGGAGATAGTCCTCTCTCT +
Preference number: 3 (lower is better)
Translates to: MAICLAVPAASQGWELSVCLWAF*GDSPLS
Trigger: AGAGAGAGGACTATCTCCCAAGAAAGCCCAGAGGCA...GACGGACAGTTCCCAACCTTGGGATGCAGCTGGAACTGCCAGGCAGATGGCCAT
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000104962.2
3UTR TCA 72 bp GATGATGGTGACAGTGTGACAAGTGTGGCACAGATGTaGACCTGGTGGCCAGGTGGCCTGATGGCCATCTGC +
Preference number: 3 (lower is better)
Translates to: DDGDSVTSVAQM*TWWPGGLMAIC
Trigger: GCAGATGGCCATCAGGCCACCTGGCCACCAGGTTCACATCTGTGCCACACTTGTCACACTGTCACCATCATC
57% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000104962.2
3UTR-3UTR CAA 90 bp ACATTTGTCAAGTGTGACTTTACTGGCTGCCTGGAACAGAATGACCTGGAGGAAAGCCTTCCCAGGACCTaGGTCACAGATCTGCACACA +
Preference number: 3 (lower is better)
Translates to: TFVKCDFTGCLEQNDLEESLPRT*VTDLHT
Trigger: TGTGTGCAGATCTGTGACCAAGGTCCTGGGAAGGCT...TTCCTCCAGGTCATTCTGTTCCAGGCAGCCAGTAAAGTCACACTTGACAAATGT
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000104962.2
3UTR GCA 72 bp GCACACACAGTTCATGCCGTTCTCAGCTGTGGCCACTaGAAAGTACTGACAACTCCCAACTCAGTCATTACT +
Preference number: 3 (lower is better)
Translates to: AHTVHAVLSCGH*KVLTTPNSVIT
Trigger: AGTAATGACTGAGTTGGGAGTTGTCAGTACTTTGCAGTGGCCACAGCTGAGAACGGCATGAACTGTGTGTGC
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000104962.2
3UTR-3UTR CAA 90 bp TGTGGCCACTGCAAAGTACTGACAACTCCCAACTCAGTCATTACTAAGTCCAACAACATGGGCTCCAGGTaGCTGCCCATCTGCTTAGAA +
Preference number: 3 (lower is better)
Translates to: CGHCKVLTTPNSVITKSNNMGSR*LPICLE
Trigger: TTCTAAGCAGATGGGCAGCAACCTGGAGCCCATGTT...GTTGGACTTAGTAATGACTGAGTTGGGAGTTGTCAGTACTTTGCAGTGGCCACA
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000104962.2
3UTR TCA 72 bp TTCATGCCGTTCTCAGCTGTGGCCACTGCAAAGTACTaGCAACTCCCAACTCAGTCATTACTAAGTCCAACA +
Preference number: 3 (lower is better)
Translates to: FMPFSAVATAKY*QLPTQSLLSPT
Trigger: TGTTGGACTTAGTAATGACTGAGTTGGGAGTTGTCAGTACTTTGCAGTGGCCACAGCTGAGAACGGCATGAA
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000104962.2
3UTR CAA 72 bp GGCCATCTGCCTGGCAGTTCCAGCTGCATCCCAAGGTaGGGAACTGTCCGTCCATCCAGAGGGCGGGACAGG +
Preference number: 4 (lower is better)
Translates to: GHLPGSSSCIPR*GTVRPSRGRDR
Trigger: CCTGTCCCGCCCTCTGGATGGACGGACAGTTCCCAACCTTGGGATGCAGCTGGAACTGCCAGGCAGATGGCC
64% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000104962.2
CDS-3UTR TCA 90 bp CATCTAGGTGGTCAGTGCCCACTGCAGGAAGGAGACAGCTTTGCTCACTGCAGGTGTTGGTGTGCCCAGTaGTGCTGGCGGCCAGCAGCG +
Preference number: 4 (lower is better)
Translates to: HLGGQCPLQEGDSFAHCRCWCAQ*CWRPAA
Trigger: CGCTGCTGGCCGCCAGCATCACTGGGCACACCAACA...CCTGCAGTGAGCAAAGCTGTCTCCTTCCTGCAGTGGGCACTGACCACCTAGATG
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000104962.2
CDS-3UTR GCA 90 bp ATGGCCATCTGCCTGGCAGTTCCAGCTGCATCCCAAGGTTGGGAACTGTCCGTCGCAGCAGAGGCAGCTTaGCGTCGTGCGCCGCATTGT +
Preference number: 4 (lower is better)
Translates to: MAICLAVPAASQGWELSVAAEAA*RRAPHC
Trigger: ACAATGCGGCGCACGACGGCAAGCTGCCTCTGCTGC...GACGGACAGTTCCCAACCTTGGGATGCAGCTGGAACTGCCAGGCAGATGGCCAT
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000104962.2
CDS-3UTR CCA 90 bp AGTGCAGAGGCCTCCAGACCTAGACAGAAGCATGCCACTGGGGAGGCTCAGGCATGCCTAGGTTGCCCTTaGCCGAGTGGTCCTGCAGCA +
Preference number: 4 (lower is better)
Translates to: SAEASRPRQKHATGEAQACLGCP*PSGPAA
Trigger: TGCTGCAGGACCACTCGGCCAAGGGCAACCTAGGCA...TGCCTGAGCCTCCCCAGTGGCATGCTTCTGTCTAGGTCTGGAGGCCTCTGCACT
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000104962.2
CDS-3UTR CCA 90 bp CCAGCAGGCCATAGGGCCTGGATGCTTCTGCTTGGAGAAGTAAGGCCCAAGTGGCCTCACGCCCACGGCTaGCCAACAGTTTCTGCAGCA +
Preference number: 4 (lower is better)
Translates to: PAGHRAWMLLLGEVRPKWPHAHG*PTVSAA
Trigger: TGCTGCAGAAACTGTTGGCCAGCCGTGGGCGTGAGG...CCACTTGGGCCTTACTTCTCCAAGCAGAAGCATCCAGGCCCTATGGCCTGCTGG
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000104962.2
CDS-3UTR CCA 90 bp GGCCATAGGGCCTGGATGCTTCTGCTTGGAGAAGTAAGGCCCAAGTGGGCACCAGCCAGAACCAGTTGCTaGGGCTCTGGCTTAGGGAGG +
Preference number: 4 (lower is better)
Translates to: GHRAWMLLLGEVRPKWAPARTSC*GSGLGR
Trigger: CCTCCCTAAGCCAGAGCCCCAGCAACTGGTTCTGGC...TGGTGCCCACTTGGGCCTTACTTCTCCAAGCAGAAGCATCCAGGCCCTATGGCC
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000104962.2
CDS-3UTR TCA 90 bp GGCCATAGGGCCTGGATGCTTCTGCTTGGAGAAGTAAGGCCCAAGTGGGCACCAAGTCCAACAGCACCTTaGCCACCTGCAGTGACGGGA +
Preference number: 4 (lower is better)
Translates to: GHRAWMLLLGEVRPKWAPSPTAP*PPAVTG
Trigger: TCCCGTCACTGCAGGTGGTCAAGGTGCTGTTGGACT...TGGTGCCCACTTGGGCCTTACTTCTCCAAGCAGAAGCATCCAGGCCCTATGGCC
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000104962.2
CDS-3UTR CCA 90 bp ACGTGGGCCAAGCTAGTACCACATGGGTCCATCACTGCCCTGGCTGGCAGTCCCCTGTTCTGCATCTTCTaGGGTGGAGCAGTGGTTTCC +
Preference number: 4 (lower is better)
Translates to: TWAKLVPHGSITALAGSPLFCIF*GGAVVS
Trigger: GGAAACCACTGCTCCACCCCAGAAGATGCAGAACAG...GGGACTGCCAGCCAGGGCAGTGATGGACCCATGTGGTACTAGCTTGGCCCACGT
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000104962.2
CDS-3UTR CCA 90 bp CCAGCAGGCCATAGGGCCTGGATGCTTCTGCTTGGAGAAGTAAGGCCCAAGTGGTGGTTTCCTGCCATCTaGGAGGAGCCTTCTCCAGGA +
Preference number: 4 (lower is better)
Translates to: PAGHRAWMLLLGEVRPKWWFPAI*EEPSPG
Trigger: TCCTGGAGAAGGCTCCTCCCAGATGGCAGGAAACCA...CCACTTGGGCCTTACTTCTCCAAGCAGAAGCATCCAGGCCCTATGGCCTGCTGG
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000104962.2
CDS-3UTR TCA 90 bp CATCTAGGTGGTCAGTGCCCACTGCAGGAAGGAGACAGCTTTGCTCACTGCAGGCCAGCTCCTCTGGGATaGAGCCCTTATAAGGGACCT +
Preference number: 4 (lower is better)
Translates to: HLGGQCPLQEGDSFAHCRPAPLG*SPYKGP
Trigger: AGGTCCCTTATAAGGGCTTCATCCCAGAGGAGCTGG...CCTGCAGTGAGCAAAGCTGTCTCCTTCCTGCAGTGGGCACTGACCACCTAGATG
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000104962.2
CDS-3UTR CCA 90 bp GCACACACAGTTCATGCCGTTCTCAGCTGTGGCCACTGCAAAGTACTGACAACTTCTGGGGTGGAGCAGTaGTTTCCTGCCATCTGGGAG +
Preference number: 4 (lower is better)
Translates to: AHTVHAVLSCGHCKVLTTSGVEQ*FPAIWE
Trigger: CTCCCAGATGGCAGGAAACCACTGCTCCACCCCAGA...AGTTGTCAGTACTTTGCAGTGGCCACAGCTGAGAACGGCATGAACTGTGTGTGC
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000104962.2
CDS-3UTR GCA 90 bp AAAAGGAAAAACCAACTGCAAACATCTAGGTGGTCAGTGCCCACTGCAGGAAGGGGTTCCTTGGGCAGCTaGAGAGCCCGTTCCACTTCC +
Preference number: 4 (lower is better)
Translates to: KRKNQLQTSRWSVPTAGRGSLGS*RARSTS
Trigger: GGAAGTGGAACGGGCTCTGCAGCTGCCCAAGGAACC...CCTTCCTGCAGTGGGCACTGACCACCTAGATGTTTGCAGTTGGTTTTTCCTTTT
53% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 1 transcripts:
ENSMUST00000104962.2
CDS-3UTR CCA 90 bp ACATTTGTCAAGTGTGACTTTACTGGCTGCCTGGAACAGAATGACCTGGAGGAAACGCTGGCGCCGCAGTaGTCCACCAGATACTCCACC +
Preference number: 4 (lower is better)
Translates to: TFVKCDFTGCLEQNDLEETLAPQ*STRYST
Trigger: GGTGGAGTATCTGGTGGACCACTGCGGCGCCAGCGT...TTCCTCCAGGTCATTCTGTTCCAGGCAGCCAGTAAAGTCACACTTGACAAATGT
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000104962.2
CDS-3UTR CCA 90 bp CTCAGCTGTGGCCACTGCAAAGTACTGACAACTCCCAACTCAGTCATTACTAAGAGTCATCCGGTTCCTTaGGCAGCTGCAGAGCCCGTT +
Preference number: 4 (lower is better)
Translates to: LSCGHCKVLTTPNSVITKSHPVP*AAAEPV
Trigger: AACGGGCTCTGCAGCTGCCCAAGGAACCGGATGACT...CTTAGTAATGACTGAGTTGGGAGTTGTCAGTACTTTGCAGTGGCCACAGCTGAG
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000104962.2
CDS-3UTR GCA 90 bp AAAAGGAAAAACCAACTGCAAACATCTAGGTGGTCAGTGCCCACTGCAGGAAGGTTCTGGGCAGCGATGTaGAGTGGGCTGTTGTTGTCG +
Preference number: 4 (lower is better)
Translates to: KRKNQLQTSRWSVPTAGRFWAAM*SGLLLS
Trigger: CGACAACAACAGCCCACTGCACATCGCTGCCCAGAA...CCTTCCTGCAGTGGGCACTGACCACCTAGATGTTTGCAGTTGGTTTTTCCTTTT
51% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000104962.2
CDS-3UTR GCA 90 bp GCACACACAGTTCATGCCGTTCTCAGCTGTGGCCACTGCAAAGTACTGACAACTTCCAGGTTGTTTTGTTaGATGTCCAAGGCATACTTC +
Preference number: 4 (lower is better)
Translates to: AHTVHAVLSCGHCKVLTTSRLFC*MSKAYF
Trigger: GAAGTATGCCTTGGACATGCAACAAAACAACCTGGA...AGTTGTCAGTACTTTGCAGTGGCCACAGCTGAGAACGGCATGAACTGTGTGTGC
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000104962.2
CDS-3UTR CAA 90 bp TGGTTCTGGGGCTGCACACAGGGCCTCACGTGGGCCAAGCTAGTACCACATGGGACCTCCAGGTCCGCCTaGTGCTCGCCCACCAGGCAG +
Preference number: 5 (lower is better)
Translates to: WFWGCTQGLTWAKLVPHGTSRSA*CSPTRQ
Trigger: CTGCCTGGTGGGCGAGCACAAGGCGGACCTGGAGGT...CCCATGTGGTACTAGCTTGGCCCACGTGAGGCCCTGTGTGCAGCCCCAGAACCA
66% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000104962.2
CDS CCA 90 bp ACCAGTTGCTGGGGCTCTGGCTTAGGGAGGAAGCCTCCACCCTGGTaGCGGAGTTCCATCGCCCTTCTCCAGTGCTTCAGGGCTCCAAGC +
Preference number: 5 (lower is better)
Translates to: TSCWGSGLGRKPPPW*RSSIALLQCFRAPS
Trigger: GCTTGGAGCCCTGAAGCACTGGAGAAGGGCGATGGAACTCCGCCACCAGGGTGGAGGCTTCCTCCCTAAGCCAGAGCCCCAGCAACTGGT
63% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000104962.2
CDS CCA 90 bp AGAACCAGTTGCTGGGGCTCTGGCTTAGGGAGGAAGCCTCCACCCTaGTGGCGGAGTTCCATCGCCCTTCTCCAGTGCTTCAGGGCTCCA +
Preference number: 5 (lower is better)
Translates to: RTSCWGSGLGRKPPP*WRSSIALLQCFRAP
Trigger: TGGAGCCCTGAAGCACTGGAGAAGGGCGATGGAACTCCGCCACCAGGGTGGAGGCTTCCTCCCTAAGCCAGAGCCCCAGCAACTGGTTCT
62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000104962.2
CDS-3UTR CAA 90 bp CATCTAGGTGGTCAGTGCCCACTGCAGGAAGGAGACAGCTTTGCTCACTGCAGGGGCTGCACGGTGCTCTaGGCCAACAGCTTCGAGTCC +
Preference number: 5 (lower is better)
Translates to: HLGGQCPLQEGDSFAHCRGCTVL*ANSFES
Trigger: GGACTCGAAGCTGTTGGCCAAGAGCACCGTGCAGCC...CCTGCAGTGAGCAAAGCTGTCTCCTTCCTGCAGTGGGCACTGACCACCTAGATG
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000104962.2
CDS-3UTR CAA 90 bp CAGCTGGGTTCACTCCAGCAGGCCATAGGGCCTGGATGCTTCTGCTTGGAGAAGATAGGCCAGAACCAGTaGCTGGGGCTCTGGCTTAGG +
Preference number: 5 (lower is better)
Translates to: QLGSLQQAIGPGCFCLEKIGQNQ*LGLWLR
Trigger: CCTAAGCCAGAGCCCCAGCAACTGGTTCTGGCCTAT...CTTCTCCAAGCAGAAGCATCCAGGCCCTATGGCCTGCTGGAGTGAACCCAGCTG
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000104962.2
CDS-3UTR CAA 90 bp AACTTTTTGTGGTTCTGGGGCTGCACACAGGGCCTCACGTGGGCCAAGCTAGTAAGCTGCATGCCTAGGTaGCCCTTGGCCGAGTGGTCC +
Preference number: 5 (lower is better)
Translates to: NFLWFWGCTQGLTWAKLVSCMPR*PLAEWS
Trigger: GGACCACTCGGCCAAGGGCAACCTAGGCATGCAGCT...TACTAGCTTGGCCCACGTGAGGCCCTGTGTGCAGCCCCAGAACCACAAAAAGTT
59% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000104962.2
CDS-3UTR CAA 90 bp AACTTTTTGTGGTTCTGGGGCTGCACACAGGGCCTCACGTGGGCCAAGCTAGTAGAGTCATCCGGTTCCTaGGGCAGCTGCAGAGCCCGT +
Preference number: 5 (lower is better)
Translates to: NFLWFWGCTQGLTWAKLVESSGS*GSCRAR
Trigger: ACGGGCTCTGCAGCTGCCCAAGGAACCGGATGACTC...TACTAGCTTGGCCCACGTGAGGCCCTGTGTGCAGCCCCAGAACCACAAAAAGTT
59% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000104962.2
CDS CCA 90 bp TACTGTTCTGCATCTTCTGGGGTGGAGCAGTGGTTTCCTGCCATCTaGGAGGAGCCTTCTCCAGGAAGCTCTGTCCCTGAGAGCTGCTCG +
Preference number: 5 (lower is better)
Translates to: YCSASSGVEQWFPAI*EEPSPGSSVPESCS
Trigger: CGAGCAGCTCTCAGGGACAGAGCTTCCTGGAGAAGGCTCCTCCCAGATGGCAGGAAACCACTGCTCCACCCCAGAAGATGCAGAACAGTA
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000104962.2
CDS-3UTR CAA 90 bp CCAGCAGGCCATAGGGCCTGGATGCTTCTGCTTGGAGAAGTAAGGCCCAAGTGGACTTCCCGAACCCCTTaGCTGAGCACACCTATGAGG +
Preference number: 5 (lower is better)
Translates to: PAGHRAWMLLLGEVRPKWTSRTP*LSTPMR
Trigger: CCTCATAGGTGTGCTCAGCAAAGGGGTTCGGGAAGT...CCACTTGGGCCTTACTTCTCCAAGCAGAAGCATCCAGGCCCTATGGCCTGCTGG
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000104962.2
CDS-3UTR CAA 90 bp AAAAGGAAAAACCAACTGCAAACATCTAGGTGGTCAGTGCCCACTGCAGGAAGGCAGTCCAACAGCACCTaGACCACCTGCAGTGACGGG +
Preference number: 5 (lower is better)
Translates to: KRKNQLQTSRWSVPTAGRQSNST*TTCSDG
Trigger: CCCGTCACTGCAGGTGGTCAAGGTGCTGTTGGACTG...CCTTCCTGCAGTGGGCACTGACCACCTAGATGTTTGCAGTTGGTTTTTCCTTTT
53% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000104962.2
CDS GCA 72 bp CCAGCAGCGGCGTCATGCCATAGCCGTCGCGCTCCATaGGCGCGTGGCAGCTCAGCAGCAGTTGTAGGATCT +
Preference number: 6 (lower is better)
Translates to: PAAASCHSRRAP*ARGSSAAVVGS
Trigger: AGATCCTACAACTGCTGCTGAGCTGCCACGCGCGCATGGAGCGCGACGGCTATGGCATGACGCCGCTGCTGG
65% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000104962.2
CDS CCA 72 bp TGGGGCTCTGGCTTAGGGAGGAAGCCTCCACCCTGGTaGCGGAGTTCCATCGCCCTTCTCCAGTGCTTCAGG +
Preference number: 6 (lower is better)
Translates to: WGSGLGRKPPPW*RSSIALLQCFR
Trigger: CCTGAAGCACTGGAGAAGGGCGATGGAACTCCGCCACCAGGGTGGAGGCTTCCTCCCTAAGCCAGAGCCCCA
64% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000104962.2
CDS CCA 72 bp TGCTGGGGCTCTGGCTTAGGGAGGAAGCCTCCACCCTaGTGGCGGAGTTCCATCGCCCTTCTCCAGTGCTTC +
Preference number: 6 (lower is better)
Translates to: CWGSGLGRKPPP*WRSSIALLQCF
Trigger: GAAGCACTGGAGAAGGGCGATGGAACTCCGCCACCAGGGTGGAGGCTTCCTCCCTAAGCCAGAGCCCCAGCA
64% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000104962.2
CDS CAA 72 bp CCACGGCTGGCCAACAGTTTCTGCAGCAGAGGCAGCTaGCCGTCGTGCGCCGCATTGTACACCGCTGTGTGC +
Preference number: 6 (lower is better)
Translates to: PRLANSFCSRGS*PSCAALYTAVC
Trigger: GCACACAGCGGTGTACAATGCGGCGCACGACGGCAAGCTGCCTCTGCTGCAGAAACTGTTGGCCAGCCGTGG
64% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000104962.2
CDS GCA 72 bp CACGGCTGGCCAACAGTTTCTGCAGCAGAGGCAGCTTaGCGTCGTGCGCCGCATTGTACACCGCTGTGTGCA +
Preference number: 6 (lower is better)
Translates to: HGWPTVSAAEAA*RRAPHCTPLCA
Trigger: TGCACACAGCGGTGTACAATGCGGCGCACGACGGCAAGCTGCCTCTGCTGCAGAAACTGTTGGCCAGCCGTG
62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000104962.2
CDS TCA 72 bp TGCTCCGCAGTCCAACAGCACCTTGACCACCTGCAGTaGCGGGAAGACGCCCACATGATACTGGCCCACGTT +
Preference number: 6 (lower is better)
Translates to: CSAVQQHLDHLQ*REDAHMILAHV
Trigger: AACGTGGGCCAGTATCATGTGGGCGTCTTCCCGTCACTGCAGGTGGTCAAGGTGCTGTTGGACTGCGGAGCA
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000104962.2
CDS CCA 72 bp GCATCTTCTGGGGTGGAGCAGTGGTTTCCTGCCATCTaGGAGGAGCCTTCTCCAGGAAGCTCTGTCCCTGAG +
Preference number: 6 (lower is better)
Translates to: ASSGVEQWFPAI*EEPSPGSSVPE
Trigger: CTCAGGGACAGAGCTTCCTGGAGAAGGCTCCTCCCAGATGGCAGGAAACCACTGCTCCACCCCAGAAGATGC
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000104962.2
CDS GCA 72 bp TTGCTGAGCACACCTATGAGGTCGGCAAAGTCAAGCTaGATGCCTAGGTTGCCCTTGGCCGAGTGGTCCTGC +
Preference number: 6 (lower is better)
Translates to: LLSTPMRSAKSS*MPRLPLAEWSC
Trigger: GCAGGACCACTCGGCCAAGGGCAACCTAGGCATGCAGCTTGACTTTGCCGACCTCATAGGTGTGCTCAGCAA
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000104962.2
CDS GCA 72 bp CAGCGATGTGCAGTGGGCTGTTGTTGTCGAAATCCCTaGTGTCAGGGTCTGCTCCGCAGTCCAACAGCACCT +
Preference number: 6 (lower is better)
Translates to: QRCAVGCCCRNP*CQGLLRSPTAP
Trigger: AGGTGCTGTTGGACTGCGGAGCAGACCCTGACAGCAGGGATTTCGACAACAACAGCCCACTGCACATCGCTG
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000104962.2
CDS GCA 72 bp CTGTTCTGCATCTTCTGGGGTGGAGCAGTGGTTTCCTaGCATCTGGGAGGAGCCTTCTCCAGGAAGCTCTGT +
Preference number: 6 (lower is better)
Translates to: LFCIFWGGAVVS*HLGGAFSRKLC
Trigger: ACAGAGCTTCCTGGAGAAGGCTCCTCCCAGATGGCAGGAAACCACTGCTCCACCCCAGAAGATGCAGAACAG
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000104962.2
CDS GCA 72 bp TTCCCGGCTGGTAGGGCAGCAGCTCTCATACTGTTCTaGATCTTCTGGGGTGGAGCAGTGGTTTCCTGCCAT +
Preference number: 6 (lower is better)
Translates to: FPAGRAAALILF*IFWGGAVVSCH
Trigger: ATGGCAGGAAACCACTGCTCCACCCCAGAAGATGCAGAACAGTATGAGAGCTGCTGCCCTACCAGCCGGGAA
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000104962.2
CDS CCA 72 bp GGCAGCAGCTCTCATACTGTTCTGCATCTTCTGGGGTaGAGCAGTGGTTTCCTGCCATCTGGGAGGAGCCTT +
Preference number: 6 (lower is better)
Translates to: GSSSHTVLHLLG*SSGFLPSGRSL
Trigger: AAGGCTCCTCCCAGATGGCAGGAAACCACTGCTCCACCCCAGAAGATGCAGAACAGTATGAGAGCTGCTGCC
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000104962.2
CDS CCA 72 bp GGTAGGGCAGCAGCTCTCATACTGTTCTGCATCTTCTaGGGTGGAGCAGTGGTTTCCTGCCATCTGGGAGGA +
Preference number: 6 (lower is better)
Translates to: GRAAALILFCIF*GGAVVSCHLGG
Trigger: TCCTCCCAGATGGCAGGAAACCACTGCTCCACCCCAGAAGATGCAGAACAGTATGAGAGCTGCTGCCCTACC
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000104962.2