Pregenerated sensors for FDX1 (Mus musculus)
Ensembl gene IDs: ENSMUSG00000032051Ensembl transcript IDs: ENSMUST00000034552.8, ENSMUST00000214013.2, ENSMUST00000214486.2
Found 50 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR TCA 90 bp | ACAGGCACACATGAGGACAGAGAAGAGCTCTGGGTCAGAGCAGCCTaGCACAATGAGCTTGCATGTAAAAAGGTATGGTGTTCTCAGTCT | + |
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Preference number: 1 (lower is better) Translates to: TGTHEDREELWVRAA*HNELACKKVWCSQS Trigger: AGACTGAGAACACCATACCTTTTTACATGCAAGCTCATTGTGTCAGGCTGCTCTGACCCAGAGCTCTTCTCTGTCCTCATGTGTGCCTGT 49% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000214013.2 |
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| 3UTR GCA 90 bp | GACAAGACAAGCAATGGGCTAGGGTGTGGCTCGGTGATAGACACATaGCTCATGTCCAAAAGTCCCAAATTCAATCCCCAGAGTCTTCTT | + |
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Preference number: 1 (lower is better) Translates to: DKTSNGLGCGSVIDT*LMSKSPKFNPQSLL Trigger: AAGAAGACTCTGGGGATTGAATTTGGGACTTTTGGACATGAGGCATGTGTCTATCACCGAGCCACACCCTAGCCCATTGCTTGTCTTGTC 49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000214013.2 |
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| 3UTR TCA 90 bp | TCAGTCTCTTCCAAAGGTATTAGTCTCACCTCCATAAGACAGAGGTaGGGCTGGAGACAGAACTGTGTTGAAGGAATTCTGATCACACTG | + |
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Preference number: 1 (lower is better) Translates to: SVSSKGISLTSIRQR*GWRQNCVEGILITL Trigger: CAGTGTGATCAGAATTCCTTCAACACAGTTCTGTCTCCAGCCTCACCTCTGTCTTATGGAGGTGAGACTAATACCTTTGGAAGAGACTGA 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000214013.2 |
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| 3UTR TCA 90 bp | TCTCACCTCCATAAGACAGAGGTGAGGCTGGAGACAGAACTGTGTTaGAGGAATTCTGATCACACTGTGAACCCTAAGACTGTGTTATTT | + |
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Preference number: 1 (lower is better) Translates to: SHLHKTEVRLETELC*RNSDHTVNPKTVLF Trigger: AAATAACACAGTCTTAGGGTTCACAGTGTGATCAGAATTCCTTCAACACAGTTCTGTCTCCAGCCTCACCTCTGTCTTATGGAGGTGAGA 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000214013.2 |
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| 3UTR TCA 90 bp | GGCCTTAGTGAGCTAGTCAGACACGGCACATGCTCATATGATGAGTaGGACAAGGCTACTCCACAAGGAACTATTAATTTACAAAGTGAA | + |
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Preference number: 1 (lower is better) Translates to: GLSELVRHGTCSYDE*DKATPQGTINLQSE Trigger: TTCACTTTGTAAATTAATAGTTCCTTGTGGAGTAGCCTTGTCTCACTCATCATATGAGCATGTGCCGTGTCTGACTAGCTCACTAAGGCC 43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000214013.2 |
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| 3UTR TCA 90 bp | CAATCAGAAGATGAGAGAGTGTTTGCAAAATATGATATAGTTATGTaGACCATACCAAAGTCCAGTCTTCATTCAACTCTCTGCCATCAC | + |
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Preference number: 1 (lower is better) Translates to: QSEDERVFAKYDIVM*TIPKSSLHSTLCHH Trigger: GTGATGGCAGAGAGTTGAATGAAGACTGGACTTTGGTATGGTTCACATAACTATATCATATTTTGCAAACACTCTCTCATCTTCTGATTG 38% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000214013.2 |
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| 3UTR-3UTR CCA 90 bp | CACCTATCAGTGAGGCTCAGCAGAGCACTGCAGGTAGTGATGGGAGAACAGGCAGTTAAAAACAGTATTTaGCACCAAACATGGGGTGCC | + |
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Preference number: 2 (lower is better) Translates to: HLSVRLSRALQVVMGEQAVKNSI*HQTWGA Trigger: GGCACCCCATGTTTGGTGCCAAATACTGTTTTTAAC...TGCCTGTTCTCCCATCACTACCTGCAGTGCTCTGCTGAGCCTCACTGATAGGTG 50% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000214013.2 |
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| 3UTR-3UTR TCA 90 bp | CAGAGCACTGCAGGTAGTGATGGGAGAACAGGCACACATGAGGACAGAGAAGAGGAGACAGAACTGTGTTaGAGGAATTCTGATCACACT | + |
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Preference number: 2 (lower is better) Translates to: QSTAGSDGRTGTHEDREEETELC*RNSDHT Trigger: AGTGTGATCAGAATTCCTTCAACACAGTTCTGTCTC...CTCTTCTCTGTCCTCATGTGTGCCTGTTCTCCCATCACTACCTGCAGTGCTCTG 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000214013.2 |
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| 3UTR-3UTR GCA 90 bp | CTCAGCAGAGCACTGCAGGTAGTGATGGGAGAACAGGCACACATGAGGACAGAGCTTCATTCAACTCTCTaGCATCACAGAAATCAACAT | + |
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Preference number: 2 (lower is better) Translates to: LSRALQVVMGEQAHMRTELHSTL*HHRNQH Trigger: ATGTTGATTTCTGTGATGGCAGAGAGTTGAATGAAG...CTCTGTCCTCATGTGTGCCTGTTCTCCCATCACTACCTGCAGTGCTCTGCTGAG 48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000214013.2 |
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| 3UTR-3UTR TCA 90 bp | TTTTATTGTAGCTTAGGAATTCTTGCTCATGTCAACAGACTGTCGGACATCCGCTTGGCAGCCCAACCTTaGCCAAAGTCCAGTCTTCAT | + |
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Preference number: 2 (lower is better) Translates to: FYCSLGILAHVNRLSDIRLAAQP*PKSSLH Trigger: ATGAAGACTGGACTTTGGTCAAGGTTGGGCTGCCAA...GCGGATGTCCGACAGTCTGTTGACATGAGCAAGAATTCCTAAGCTACAATAAAA 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000214486.2 |
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| 3UTR-3UTR CCA 90 bp | GACAATACCCAATTATGCACTGAGCTCTATCTGCAAGAGCCAAAAACAAAACAATGCCTAATTCTGTCCTaGAGATCCTATCTCCTCCCA | + |
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Preference number: 2 (lower is better) Translates to: DNTQLCTELYLQEPKTKQCLILS*RSYLLP Trigger: TGGGAGGAGATAGGATCTCCAGGACAGAATTAGGCA...TTGTTTTGTTTTTGGCTCTTGCAGATAGAGCTCAGTGCATAATTGGGTATTGTC 42% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000214013.2 |
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| 3UTR-3UTR TCA 90 bp | GACAATACCCAATTATGCACTGAGCTCTATCTGCAAGAGCCAAAAACAAAACAAAAGAGGAAGTCAGGATaGTGGATAGAGAGACACACA | + |
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Preference number: 2 (lower is better) Translates to: DNTQLCTELYLQEPKTKQKRKSG*WIERHT Trigger: TGTGTGTCTCTCTATCCATCATCCTGACTTCCTCTT...TTGTTTTGTTTTTGGCTCTTGCAGATAGAGCTCAGTGCATAATTGGGTATTGTC 41% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 1 transcripts: ENSMUST00000214013.2 |
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| 3UTR-3UTR TCA 90 bp | AATGGTTCAAAAGCAGCACTGACAGAATTTTTAAGGGCAACTTCTATGATTTCCTACCCAATTATGCACTaGGCTCTATCTGCAAGAGCC | + |
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Preference number: 2 (lower is better) Translates to: NGSKAALTEFLRATSMISYPIMH*ALSARA Trigger: GGCTCTTGCAGATAGAGCTCAGTGCATAATTGGGTA...GGAAATCATAGAAGTTGCCCTTAAAAATTCTGTCAGTGCTGCTTTTGAACCATT 41% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000214013.2 |
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| 3UTR-3UTR TCA 90 bp | TTCAGAGCCAAACAGACCAATGGTTCAAAAGCAGCACTGACAGAATTTTTAAGGATTCTGATCACACTGTaGACCCTAAGACTGTGTTAT | + |
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Preference number: 2 (lower is better) Translates to: FRAKQTNGSKAALTEFLRILITL*TLRLCY Trigger: ATAACACAGTCTTAGGGTTCACAGTGTGATCAGAAT...CCTTAAAAATTCTGTCAGTGCTGCTTTTGAACCATTGGTCTGTTTGGCTCTGAA 40% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000214013.2 |
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| 3UTR-3UTR TCA 90 bp | AATGGTTCAAAAGCAGCACTGACAGAATTTTTAAGGGCAACTTCTATGATTTCCATGCTTCAGTTTTGCTaGCAAGACAAGCAATGGGCT | + |
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Preference number: 2 (lower is better) Translates to: NGSKAALTEFLRATSMISMLQFC*QDKQWA Trigger: AGCCCATTGCTTGTCTTGTCAGCAAAACTGAAGCAT...GGAAATCATAGAAGTTGCCCTTAAAAATTCTGTCAGTGCTGCTTTTGAACCATT 40% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 1 transcripts: ENSMUST00000214013.2 |
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| 3UTR-3UTR TCA 90 bp | AAAAACAGTATTTGGCACCAAACATGGGGTGCCATTTGTAACCATTTGGTTTTTCTAGTTTCATATGTCTaGCTTACTTGTCTTGGTGGT | + |
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Preference number: 2 (lower is better) Translates to: KNSIWHQTWGAICNHLVFLVSYV*LTCLGG Trigger: ACCACCAAGACAAGTAAGTCAGACATATGAAACTAG...AAAAACCAAATGGTTACAAATGGCACCCCATGTTTGGTGCCAAATACTGTTTTT 38% GC, longest homopolymer 5 nt, total homopolymer stretches 14 nt. Matches the following 1 transcripts: ENSMUST00000214013.2 |
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| 3UTR CAA 90 bp | ATGGAAAACTCAATTCAATATTTTCTTATTAACATCTGTTACATGTaGGGCACAGGAGAGGTATTCATAGGAAAGCACAAGATTCAGAGC | + |
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Preference number: 2 (lower is better) Translates to: MENSIQYFLINICYM*GTGEVFIGKHKIQS Trigger: GCTCTGAATCTTGTGCTTTCCTATGAATACCTCTCCTGTGCCCAACATGTAACAGATGTTAATAAGAAAATATTGAATTGAGTTTTCCAT 36% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000214013.2 |
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| 3UTR-3UTR GCA 90 bp | AAAAACAGTATTTGGCACCAAACATGGGGTGCCATTTGTAACCATTTGGTTTTTATTCTATTCTATGTCTaGCACATGGCTAGTTTCATA | + |
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Preference number: 2 (lower is better) Translates to: KNSIWHQTWGAICNHLVFILFYV*HMASFI Trigger: TATGAAACTAGCCATGTGGCAGACATAGAATAGAAT...AAAAACCAAATGGTTACAAATGGCACCCCATGTTTGGTGCCAAATACTGTTTTT 36% GC, longest homopolymer 5 nt, total homopolymer stretches 14 nt. Matches the following 1 transcripts: ENSMUST00000214013.2 |
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| 3UTR TCA 72 bp | GGAACATCTGAGCTGAGGCAGATGCTTCAGTTTTGCTaGCAAGACAAGCAATGGGCTAGGGTGTGGCTCGGT | + |
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Preference number: 3 (lower is better) Translates to: GTSELRQMLQFC*QDKQWARVWLG Trigger: ACCGAGCCACACCCTAGCCCATTGCTTGTCTTGTCAGCAAAACTGAAGCATCTGCCTCAGCTCAGATGTTCC 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000214013.2 |
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| 3UTR GCA 72 bp | AGCAATGGGCTAGGGTGTGGCTCGGTGATAGACACATaGCTCATGTCCAAAAGTCCCAAATTCAATCCCCAG | + |
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Preference number: 3 (lower is better) Translates to: SNGLGCGSVIDT*LMSKSPKFNPQ Trigger: CTGGGGATTGAATTTGGGACTTTTGGACATGAGGCATGTGTCTATCACCGAGCCACACCCTAGCCCATTGCT 51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000214013.2 |
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| 3UTR-3UTR CAA 90 bp | CTCAGCAGAGCACTGCAGGTAGTGATGGGAGAACAGGCACACATGAGGACAGAGCCTGACACAATGAGCTaGCATGTAAAAAGGTATGGT | + |
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Preference number: 3 (lower is better) Translates to: LSRALQVVMGEQAHMRTEPDTMS*HVKRYG Trigger: ACCATACCTTTTTACATGCAAGCTCATTGTGTCAGG...CTCTGTCCTCATGTGTGCCTGTTCTCCCATCACTACCTGCAGTGCTCTGCTGAG 50% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000214013.2 |
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| 3UTR-3UTR CAA 90 bp | CTCAGCAGAGCACTGCAGGTAGTGATGGGAGAACAGGCACACATGAGGACAGAGGGTCCTACTCCCCATTaGGTTCTTGATCAATTAATA | + |
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Preference number: 3 (lower is better) Translates to: LSRALQVVMGEQAHMRTEGPTPH*VLDQLI Trigger: TATTAATTGATCAAGAACCAAATGGGGAGTAGGACC...CTCTGTCCTCATGTGTGCCTGTTCTCCCATCACTACCTGCAGTGCTCTGCTGAG 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000214013.2 |
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| 3UTR GCA 72 bp | ATGTCTGACTTACTTGTCTTGGTGGTGAATCTCCTGTaGCTAATTCTGTCCTGGAGATCCTATCTCCTCCCA | + |
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Preference number: 3 (lower is better) Translates to: MSDLLVLVVNLL*LILSWRSYLLP Trigger: TGGGAGGAGATAGGATCTCCAGGACAGAATTAGGCACAGGAGATTCACCACCAAGACAAGTAAGTCAGACAT 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000214013.2 |
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| 3UTR TCA 72 bp | CATAAGACAGAGGTGAGGCTGGAGACAGAACTGTGTTaGAGGAATTCTGATCACACTGTGAACCCTAAGACT | + |
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Preference number: 3 (lower is better) Translates to: HKTEVRLETELC*RNSDHTVNPKT Trigger: AGTCTTAGGGTTCACAGTGTGATCAGAATTCCTTCAACACAGTTCTGTCTCCAGCCTCACCTCTGTCTTATG 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000214013.2 |
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| 3UTR CCA 72 bp | GAGAGACACACAGGAAGTCGAAGTTCACCCCAGCATTaGTTGGCTCCCATTGGTAAAATCAAACATTTGAGA | + |
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Preference number: 3 (lower is better) Translates to: ERHTGSRSSPQH*LAPIGKIKHLR Trigger: TCTCAAATGTTTGATTTTACCAATGGGAGCCAACCAATGCTGGGGTGAACTTCGACTTCCTGTGTGTCTCTC 46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000214013.2 |
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| 3UTR-3UTR CAA 90 bp | GACAAACTTGGCAGCCCAACCTTGACCAAAGTCCAGTCTTCATTCAACTCTCTGGGTCCTACTCCCCATTaGGTTCTTGATCAATTAATA | + |
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Preference number: 3 (lower is better) Translates to: DKLGSPTLTKVQSSFNSLGPTPH*VLDQLI Trigger: TATTAATTGATCAAGAACCAAATGGGGAGTAGGACC...CAGAGAGTTGAATGAAGACTGGACTTTGGTCAAGGTTGGGCTGCCAAGTTTGTC 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000214486.2 |
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| 3UTR TCA 72 bp | TATTCTATGTCTGCCACATGGCTAGTTTCATATGTCTaGCTTACTTGTCTTGGTGGTGAATCTCCTGTGCCT | + |
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Preference number: 3 (lower is better) Translates to: YSMSATWLVSYV*LTCLGGESPVP Trigger: AGGCACAGGAGATTCACCACCAAGACAAGTAAGTCAGACATATGAAACTAGCCATGTGGCAGACATAGAATA 43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000214013.2 |
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| 3UTR TCA 72 bp | GAGCTAGTCAGACACGGCACATGCTCATATGATGAGTaGGACAAGGCTACTCCACAAGGAACTATTAATTTA | + |
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Preference number: 3 (lower is better) Translates to: ELVRHGTCSYDE*DKATPQGTINL Trigger: TAAATTAATAGTTCCTTGTGGAGTAGCCTTGTCTCACTCATCATATGAGCATGTGCCGTGTCTGACTAGCTC 43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000214013.2 |
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| 3UTR GCA 72 bp | TCCTATCTCCTCCCAGAAGTCTCACTTCCTACTTCCTaGCTTGTTATAGACCATCTGCTTTTTAATAAGTCA | + |
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Preference number: 3 (lower is better) Translates to: SYLLPEVSLPTS*LVIDHLLFNKS Trigger: TGACTTATTAAAAAGCAGATGGTCTATAACAAGGCAGGAAGTAGGAAGTGAGACTTCTGGGAGGAGATAGGA 42% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000214013.2 |
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| 3UTR CCA 72 bp | ATAGGAAAGCACAAGATTCAGAGCCAAACAGACCAATaGTTCAAAAGCAGCACTGACAGAATTTTTAAGGGC | + |
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Preference number: 3 (lower is better) Translates to: IGKHKIQSQTDQ*FKSSTDRIFKG Trigger: GCCCTTAAAAATTCTGTCAGTGCTGCTTTTGAACCATTGGTCTGTTTGGCTCTGAATCTTGTGCTTTCCTAT 42% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000214013.2 |
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| 3UTR-3UTR CAA 90 bp | AAAAACAGTATTTGGCACCAAACATGGGGTGCCATTTGTAACCATTTGGTTTTTTCTGACTTACTTGTCTaGGTGGTGAATCTCCTGTGC | + |
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Preference number: 3 (lower is better) Translates to: KNSIWHQTWGAICNHLVFSDLLV*VVNLLC Trigger: GCACAGGAGATTCACCACCAAGACAAGTAAGTCAGA...AAAAACCAAATGGTTACAAATGGCACCCCATGTTTGGTGCCAAATACTGTTTTT 41% GC, longest homopolymer 6 nt, total homopolymer stretches 15 nt. Matches the following 1 transcripts: ENSMUST00000214013.2 |
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| 3UTR-3UTR CAA 90 bp | AATGGTTCAAAAGCAGCACTGACAGAATTTTTAAGGGCAACTTCTATGATTTCCAAGAGGCAAACCAGCTaGAGAAGAGCATTTGAGGTC | + |
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Preference number: 3 (lower is better) Translates to: NGSKAALTEFLRATSMISKRQTS*RRAFEV Trigger: GACCTCAAATGCTCTTCTCAAGCTGGTTTGCCTCTT...GGAAATCATAGAAGTTGCCCTTAAAAATTCTGTCAGTGCTGCTTTTGAACCATT 41% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000214013.2 |
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| 3UTR TCA 72 bp | AGAATTTTTAAGGGCAACTTCTATGATTTCCTAGCCTaGTCATCACAATGGAGAATAAAAGGCTTGCTCGTA | + |
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Preference number: 3 (lower is better) Translates to: RIFKGNFYDFLA*SSQWRIKGLLV Trigger: TACGAGCAAGCCTTTTATTCTCCATTGTGATGATCAGGCTAGGAAATCATAGAAGTTGCCCTTAAAAATTCT 38% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000214013.2 |
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| 3UTR TCA 72 bp | GATGAGAGAGTGTTTGCAAAATATGATATAGTTATGTaGACCATACCAAAGTCCAGTCTTCATTCAACTCTC | + |
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Preference number: 3 (lower is better) Translates to: DERVFAKYDIVM*TIPKSSLHSTL Trigger: GAGAGTTGAATGAAGACTGGACTTTGGTATGGTTCACATAACTATATCATATTTTGCAAACACTCTCTCATC 36% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000214013.2 |
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| CDS-3UTR CCA 90 bp | CTCAGCAGAGCACTGCAGGTAGTGATGGGAGAACAGGCACACATGAGGACAGAGGCTGAAGGAAATAGGTaGGTCTTCCAGGTTCCTGTC | + |
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Preference number: 4 (lower is better) Translates to: LSRALQVVMGEQAHMRTEAEGNR*VFQVPV Trigger: GACAGGAACCTGGAAGACCCACCTATTTCCTTCAGC...CTCTGTCCTCATGTGTGCCTGTTCTCCCATCACTACCTGCAGTGCTCTGCTGAG 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000214013.2 |
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| CDS-3UTR CCA 90 bp | CAGAGCACTGCAGGTAGTGATGGGAGAACAGGCACACATGAGGACAGAGAAGAGTCAGGGACCAATTGCTaGGCTGAAGGAAATAGGTGG | + |
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Preference number: 4 (lower is better) Translates to: QSTAGSDGRTGTHEDREESGTNC*AEGNRW Trigger: CCACCTATTTCCTTCAGCCCAGCAATTGGTCCCTGA...CTCTTCTCTGTCCTCATGTGTGCCTGTTCTCCCATCACTACCTGCAGTGCTCTG 52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000214013.2 |
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| CDS-3UTR CCA 90 bp | GACAAACTTGGCAGCCCAACCTTGACCAAAGTCCAGTCTTCATTCAACTCTCTGGCTGAAGGAAATAGGTaGGTCTTCCAGGTTCCTGTC | + |
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Preference number: 4 (lower is better) Translates to: DKLGSPTLTKVQSSFNSLAEGNR*VFQVPV Trigger: GACAGGAACCTGGAAGACCCACCTATTTCCTTCAGC...CAGAGAGTTGAATGAAGACTGGACTTTGGTCAAGGTTGGGCTGCCAAGTTTGTC 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000214486.2 |
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| CDS-3UTR CCA 90 bp | GACAAACTTGGCAGCCCAACCTTGACCAAAGTCCAGTCTTCATTCAACTCTCTGTCAGGGACCAATTGCTaGGCTGAAGGAAATAGGTGG | + |
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Preference number: 4 (lower is better) Translates to: DKLGSPTLTKVQSSFNSLSGTNC*AEGNRW Trigger: CCACCTATTTCCTTCAGCCCAGCAATTGGTCCCTGA...CAGAGAGTTGAATGAAGACTGGACTTTGGTCAAGGTTGGGCTGCCAAGTTTGTC 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000214486.2 |
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| CDS-3UTR GCA 90 bp | AAAGGTATGGTGTTCTCAGTCTCTTCCAAAGGTATTAGTCTCACCTCCATAAGATCTTATCTTCTGAGCTaGTCCGCGCGCGCGCAGACA | + |
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Preference number: 4 (lower is better) Translates to: KGMVFSVSSKGISLTSIRSYLLS*SARAQT Trigger: TGTCTGCGCGCGCGCGGAGCAGCTCAGAAGATAAGA...TCTTATGGAGGTGAGACTAATACCTTTGGAAGAGACTGAGAACACCATACCTTT 48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000214013.2 |
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| CDS-3UTR GCA 90 bp | ATAAAAACTGCAAAGTTTCAGTTCTACAGAACTGAACTAAGACAGCACAGCTACTCTTATCTTCTGAGCTaGTCCGCGCGCGCGCAGACA | + |
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Preference number: 4 (lower is better) Translates to: IKTAKFQFYRTELRQHSYSYLLS*SARAQT Trigger: TGTCTGCGCGCGCGCGGAGCAGCTCAGAAGATAAGA...GTAGCTGTGCTGTCTTAGTTCAGTTCTGTAGAACTGAAACTTTGCAGTTTTTAT 46% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000034552.8 |
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| 3UTR CAA 72 bp | AGACACACAGGAAGTCGAAGTTCACCCCAGCATTGGTaGGCTCCCATTGGTAAAATCAAACATTTGAGATTT | + |
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Preference number: 4 (lower is better) Translates to: RHTGSRSSPQHW*APIGKIKHLRF Trigger: AAATCTCAAATGTTTGATTTTACCAATGGGAGCCAACCAATGCTGGGGTGAACTTCGACTTCCTGTGTGTCT 43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000214013.2 |
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| CDS-3UTR TCA 90 bp | ACCTTGACCAAAGTCCAGTCTTCATTCAACTCTCTGCCATCACAGAAATCAACATCCTCAAAGATAAGATaGCAAGTAGAGCAAGCCAAC | + |
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Preference number: 4 (lower is better) Translates to: TLTKVQSSFNSLPSQKSTSSKIR*QVEQAN Trigger: GTTGGCTTGCTCTACTTGTCATCTTATCTTTGAGGA...TGTTGATTTCTGTGATGGCAGAGAGTTGAATGAAGACTGGACTTTGGTCAAGGT 42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000214486.2 |
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| CDS-3UTR TCA 90 bp | CATGCTCATATGATGAGTGAGACAAGGCTACTCCACAAGGAACTATTAATTTACCGCCATCTCGGTTCTTaGAGTGGACTGTTATCTTAT | + |
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Preference number: 4 (lower is better) Translates to: HAHMMSETRLLHKELLIYRHLGS*SGLLSY Trigger: ATAAGATAACAGTCCACTTCAAGAACCGAGATGGCG...GTAAATTAATAGTTCCTTGTGGAGTAGCCTTGTCTCACTCATCATATGAGCATG 41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000214013.2 |
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| CDS-3UTR TCA 90 bp | ATAAAAACTGCAAAGTTTCAGTTCTACAGAACTGAACTAAGACAGCACAGCTACCGCCATCTCGGTTCTTaGAGTGGACTGTTATCTTAT | + |
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Preference number: 4 (lower is better) Translates to: IKTAKFQFYRTELRQHSYRHLGS*SGLLSY Trigger: ATAAGATAACAGTCCACTTCAAGAACCGAGATGGCG...GTAGCTGTGCTGTCTTAGTTCAGTTCTGTAGAACTGAAACTTTGCAGTTTTTAT 40% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000034552.8 |
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| CDS-3UTR TCA 90 bp | AATGGTTCAAAAGCAGCACTGACAGAATTTTTAAGGGCAACTTCTATGATTTCCTCCTCAAAGATAAGATaGCAAGTAGAGCAAGCCAAC | + |
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Preference number: 4 (lower is better) Translates to: NGSKAALTEFLRATSMISSSKIR*QVEQAN Trigger: GTTGGCTTGCTCTACTTGTCATCTTATCTTTGAGGA...GGAAATCATAGAAGTTGCCCTTAAAAATTCTGTCAGTGCTGCTTTTGAACCATT 39% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000214013.2 |
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| CDS-3UTR TCA 90 bp | AAAATAAAAACTGCAAAGTTTCAGTTCTACAGAACTGAACTAAGACAGCACAGCTCCTCAAAGATAAGATaGCAAGTAGAGCAAGCCAAC | + |
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Preference number: 4 (lower is better) Translates to: KIKTAKFQFYRTELRQHSSSKIR*QVEQAN Trigger: GTTGGCTTGCTCTACTTGTCATCTTATCTTTGAGGA...GCTGTGCTGTCTTAGTTCAGTTCTGTAGAACTGAAACTTTGCAGTTTTTATTTT 38% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENSMUST00000034552.8 ENSMUST00000214486.2 |
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| CDS GCA 90 bp | GCGCGCGCAGACACGCTCAGCGGCCGGCCGGGCCCGGCCTCTGCATaGAGGCGGGGACTCGGGGTCCACGGAGAGATGGCAGTTCCCGCT | + |
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Preference number: 5 (lower is better) Translates to: ARADTLSGRPGPASA*RRGLGVHGEMAVPA Trigger: AGCGGGAACTGCCATCTCTCCGTGGACCCCGAGTCCCCGCCTGCATGCAGAGGCCGGGCCCGGCCGGCCGCTGAGCGTGTCTGCGCGCGC 76% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000034552.8 ENSMUST00000214013.2 |
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| CDS-3UTR CAA 90 bp | CAGAGCACTGCAGGTAGTGATGGGAGAACAGGCACACATGAGGACAGAGAAGAGCCATCGATATCTAAGTaGTTCTCAATCACAACATCT | + |
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Preference number: 5 (lower is better) Translates to: QSTAGSDGRTGTHEDREEPSISK*FSITTS Trigger: AGATGTTGTGATTGAGAACAACTTAGATATCGATGG...CTCTTCTCTGTCCTCATGTGTGCCTGTTCTCCCATCACTACCTGCAGTGCTCTG 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000214013.2 |
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| CDS-3UTR CAA 90 bp | AAAATAAAAACTGCAAAGTTTCAGTTCTACAGAACTGAACTAAGACAGCACAGCCTTGGCAGCCCAACCTaGACCTGTCTGTTAGTCCAA | + |
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Preference number: 5 (lower is better) Translates to: KIKTAKFQFYRTELRQHSLGSPT*TCLLVQ Trigger: TTGGACTAACAGACAGGTCAAGGTTGGGCTGCCAAG...GCTGTGCTGTCTTAGTTCAGTTCTGTAGAACTGAAACTTTGCAGTTTTTATTTT 42% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000034552.8 |
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| CDS-3UTR CAA 90 bp | AAAATAAAAACTGCAAAGTTTCAGTTCTACAGAACTGAACTAAGACAGCACAGCCCATCGATATCTAAGTaGTTCTCAATCACAACATCT | + |
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Preference number: 5 (lower is better) Translates to: KIKTAKFQFYRTELRQHSPSISK*FSITTS Trigger: AGATGTTGTGATTGAGAACAACTTAGATATCGATGG...GCTGTGCTGTCTTAGTTCAGTTCTGTAGAACTGAAACTTTGCAGTTTTTATTTT 36% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000034552.8 |
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