RADAR | Search for sensor designs | Human genes | Mouse genes | Code

Pregenerated sensors for FCSK (Mus musculus)

Ensembl gene IDs: ENSMUSG00000033703

Ensembl transcript IDs: ENSMUST00000041382.7, ENSMUST00000212971.2

Found 287 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).

Type Sensor Details
3UTR GCA 90 bp CATCCTGCCGAGGTCCCACTGCCAGCCAGAGCTCAGGCTCCGGGATaGGGCGTGCTTTGGCCCCGATGGGCCGGCGGCCATCCACCCGCA +
Preference number: 1 (lower is better)
Translates to: HPAEVPLPARAQAPG*GVLWPRWAGGHPPA
Trigger: TGCGGGTGGATGGCCGCCGGCCCATCGGGGCCAAAGCACGCCGCATCCCGGAGCCTGAGCTCTGGCTGGCAGTGGGACCTCGGCAGGATG
72% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000212971.2
3UTR GCA 90 bp GGTTGGCAGCTGGCCCACTGCGCAAGCCTCCTCGGCCCTCTGCCATaGAGCCCAGCACATCGGCCACACAAGCCAGAGCCCGGGCTGCCA +
Preference number: 1 (lower is better)
Translates to: GWQLAHCASLLGPLP*SPAHRPHKPEPGLP
Trigger: TGGCAGCCCGGGCTCTGGCTTGTGTGGCCGATGTGCTGGGCTGCATGGCAGAGGGCCGAGGAGGCTTGCGCAGTGGGCCAGCTGCCAACC
70% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000212971.2
3UTR CCA 90 bp CAGTCACCACCCACTGCCCGGGTGCGGGCAGCTCCACGGGCTGGGTaGAGACGAAGTGCCGGGCTGTCATCACAGCCTGGCGGATCAGGA +
Preference number: 1 (lower is better)
Translates to: QSPPTARVRAAPRAG*RRSAGLSSQPGGSG
Trigger: TCCTGATCCGCCAGGCTGTGATGACAGCCCGGCACTTCGTCTCCACCCAGCCCGTGGAGCTGCCCGCACCCGGGCAGTGGGTGGTGACTG
69% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000212971.2
3UTR CCA 90 bp CACTCAGTCACCACCCACTGCCCGGGTGCGGGCAGCTCCACGGGCTaGGTGGAGACGAAGTGCCGGGCTGTCATCACAGCCTGGCGGATC +
Preference number: 1 (lower is better)
Translates to: HSVTTHCPGAGSSTG*VETKCRAVITAWRI
Trigger: GATCCGCCAGGCTGTGATGACAGCCCGGCACTTCGTCTCCACCCAGCCCGTGGAGCTGCCCGCACCCGGGCAGTGGGTGGTGACTGAGTG
69% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000212971.2
3UTR GCA 90 bp CCCGATGGGCCGGCGGCCATCCACCCGCACAGCCAGGCCCAACACTaGTCCACCAAGCTCATAGGCAATGGGCGGTGTGTCACTCCAGCC +
Preference number: 1 (lower is better)
Translates to: PDGPAAIHPHSQAQH*STKLIGNGRCVTPA
Trigger: GGCTGGAGTGACACACCGCCCATTGCCTATGAGCTTGGTGGAGCAGTGTTGGGCCTGGCTGTGCGGGTGGATGGCCGCCGGCCCATCGGG
68% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000212971.2
3UTR CCA 90 bp AATGGGCGGTGTGTCACTCCAGCCCCCAGAGAAATCCACACGGGCTaGGCACTCAGTCACCACCCACTGCCCGGGTGCGGGCAGCTCCAC +
Preference number: 1 (lower is better)
Translates to: NGRCVTPAPREIHTG*ALSHHPLPGCGQLH
Trigger: GTGGAGCTGCCCGCACCCGGGCAGTGGGTGGTGACTGAGTGCCCAGCCCGTGTGGATTTCTCTGGGGGCTGGAGTGACACACCGCCCATT
67% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000212971.2
3UTR GCA 90 bp CCGGCACACTATCCTCATGGTCATCTCATCCTGCCGAGGTCCCACTaGCAGCCAGAGCTCAGGCTCCGGGATGCGGCGTGCTTTGGCCCC +
Preference number: 1 (lower is better)
Translates to: PAHYPHGHLILPRSH*QPELRLRDAACFGP
Trigger: GGGGCCAAAGCACGCCGCATCCCGGAGCCTGAGCTCTGGCTGGCAGTGGGACCTCGGCAGGATGAGATGACCATGAGGATAGTGTGCCGG
66% GC, longest homopolymer 4 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000212971.2
3UTR CCA 90 bp CCCTCAGGCACAGTGATTTCCTCCACCTCCACCTTGAGGGGCAGCTaGGCCCGGGAGCGCCCCACTTTGATGCCAGGCATTAGGCCACTG +
Preference number: 1 (lower is better)
Translates to: PSGTVISSTSTLRGS*ARERPTLMPGIRPL
Trigger: CAGTGGCCTAATGCCTGGCATCAAAGTGGGGCGCTCCCGGGCCCAGCTGCCCCTCAAGGTGGAGGTGGAGGAAATCACTGTGCCTGAGGG
64% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000212971.2
3UTR CCA 90 bp CCCGCACAGCCAGGCCCAACACTGCTCCACCAAGCTCATAGGCAATaGGCGGTGTGTCACTCCAGCCCCCAGAGAAATCCACACGGGCTG +
Preference number: 1 (lower is better)
Translates to: PAQPGPTLLHQAHRQ*AVCHSSPQRNPHGL
Trigger: CAGCCCGTGTGGATTTCTCTGGGGGCTGGAGTGACACACCGCCCATTGCCTATGAGCTTGGTGGAGCAGTGTTGGGCCTGGCTGTGCGGG
63% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000212971.2
3UTR GCA 90 bp CGCTGCACGGCCAGCGGCTCGCAGCCTGGGGCCATAAGCTTCTTCTaGTCCCAGTATGAGGTCAGGTACTGTCCCAGCAGAGGCAGGTTT +
Preference number: 1 (lower is better)
Translates to: RCTASGSQPGAISFF*SQYEVRYCPSRGRF
Trigger: AAACCTGCCTCTGCTGGGACAGTACCTGACCTCATACTGGGAGCAGAAGAAGCTTATGGCCCCAGGCTGCGAGCCGCTGGCCGTGCAGCG
62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000212971.2
3UTR GCA 90 bp AGGCTTTGGCCATACGCATACGGGGCCAGGACATCCATCATTCGCTaGACGGCCAGCGGCTCGCAGCCTGGGGCCATAAGCTTCTTCTGC +
Preference number: 1 (lower is better)
Translates to: RLWPYAYGARTSIIR*TASGSQPGAISFFC
Trigger: GCAGAAGAAGCTTATGGCCCCAGGCTGCGAGCCGCTGGCCGTGCAGCGAATGATGGATGTCCTGGCCCCGTATGCGTATGGCCAAAGCCT
62% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000212971.2
3UTR CCA 90 bp AGGTCCTGCCGCGCCTCTAACACATGCCTTGCCTTCTGCAAGGCCTaGCAGAAGAACAGATCTCGGCGGAAGTCCAGTGTGGCAGCCCGG +
Preference number: 1 (lower is better)
Translates to: RSCRASNTCLAFCKA*QKNRSRRKSSVAAR
Trigger: CCGGGCTGCCACACTGGACTTCCGCCGAGATCTGTTCTTCTGCCAGGCCTTGCAGAAGGCAAGGCATGTGTTAGAGGCGCGGCAGGACCT
62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000212971.2
3UTR CCA 90 bp GCTCGAACCAGCAAGGCAGGCCTGGTCAGCCACTTCTCTCTCTCCTaGGCAAGCGCCTCCACACCCCTCATCAGGTCTCCACACTCCAAG +
Preference number: 1 (lower is better)
Translates to: ARTSKAGLVSHFSLS*ASASTPLIRSPHSK
Trigger: CTTGGAGTGTGGAGACCTGATGAGGGGTGTGGAGGCGCTTGCCCAGGAGAGAGAGAAGTGGCTGACCAGGCCTGCCTTGCTGGTTCGAGC
62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000212971.2
3UTR GCA 90 bp CGGATCAGTGGACGTAGGCAGAGGTCCTGCCGCGCCTCTAACACATaGCTTGCCTTCTGCAAGGCCTGGCAGAAGAACAGATCTCGGCGG +
Preference number: 1 (lower is better)
Translates to: RISGRRQRSCRASNT*LAFCKAWQKNRSRR
Trigger: CCGCCGAGATCTGTTCTTCTGCCAGGCCTTGCAGAAGGCAAGGCATGTGTTAGAGGCGCGGCAGGACCTCTGCCTACGTCCACTGATCCG
61% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000212971.2
3UTR CCA 90 bp TCTGCAAGGCCTGGCAGAAGAACAGATCTCGGCGGAAGTCCAGTGTaGCAGCCCGGTCCACACAAGGTTGCAGCTGCTCCCAGGACAGAC +
Preference number: 1 (lower is better)
Translates to: SARPGRRTDLGGSPV*QPGPHKVAAAPRTD
Trigger: GTCTGTCCTGGGAGCAGCTGCAACCTTGTGTGGACCGGGCTGCCACACTGGACTTCCGCCGAGATCTGTTCTTCTGCCAGGCCTTGCAGA
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000212971.2
3UTR CCA 90 bp GGCAGTAATCCCGCAGGTCATCCAGGCTCCGGCACACTATCCTCATaGTCATCTCATCCTGCCGAGGTCCCACTGCCAGCCAGAGCTCAG +
Preference number: 1 (lower is better)
Translates to: GSNPAGHPGSGTLSS*SSHPAEVPLPARAQ
Trigger: CTGAGCTCTGGCTGGCAGTGGGACCTCGGCAGGATGAGATGACCATGAGGATAGTGTGCCGGAGCCTGGATGACCTGCGGGATTACTGCC
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000212971.2
3UTR GCA 90 bp CGTAGGCAGAGGTCCTGCCGCGCCTCTAACACATGCCTTGCCTTCTaGAAGGCCTGGCAGAAGAACAGATCTCGGCGGAAGTCCAGTGTG +
Preference number: 1 (lower is better)
Translates to: RRQRSCRASNTCLAF*KAWQKNRSRRKSSV
Trigger: CACACTGGACTTCCGCCGAGATCTGTTCTTCTGCCAGGCCTTGCAGAAGGCAAGGCATGTGTTAGAGGCGCGGCAGGACCTCTGCCTACG
60% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000212971.2
3UTR CCA 90 bp CCACTTCCACCAGGTGGACACTGTAGTTGCCAAGGCCCTCAGCCTTaGCCAGGACAGCTTCCAGAGTCTCTTTCTGCCGGGGTTCCTTGG +
Preference number: 1 (lower is better)
Translates to: PLPPGGHCSCQGPQP*PGQLPESLSAGVPW
Trigger: CCAAGGAACCCCGGCAGAAAGAGACTCTGGAAGCTGTCCTGGCCAAGGCTGAGGGCCTTGGCAACTACAGTGTCCACCTGGTGGAAGTGG
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000212971.2
3UTR CCA 90 bp TCCCAGTATGAGGTCAGGTACTGTCCCAGCAGAGGCAGGTTTCCTTaGCGGAAAGCTTCAGCGCACTTCTCGGTCTGTCGCACCAGTCTG +
Preference number: 1 (lower is better)
Translates to: SQYEVRYCPSRGRFP*RKASAHFSVCRTSL
Trigger: CAGACTGGTGCGACAGACCGAGAAGTGCGCTGAAGCTTTCCGCCAAGGAAACCTGCCTCTGCTGGGACAGTACCTGACCTCATACTGGGA
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000212971.2
3UTR GCA 90 bp CTGCTGGTGCCAAGACCAGAGCCGTGCGGCAGCTCTGACCACGTGTaGAGCTCAAAGCCACCATTAAAGGAGTGTAACAACTGTTCAAGC +
Preference number: 1 (lower is better)
Translates to: LLVPRPEPCGSSDHV*SSKPPLKECNNCSS
Trigger: GCTTGAACAGTTGTTACACTCCTTTAATGGTGGCTTTGAGCTGCACACGTGGTCAGAGCTGCCGCACGGCTCTGGTCTTGGCACCAGCAG
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000212971.2
3UTR GCA 90 bp AAGGAGTGTAACAACTGTTCAAGCAGAGGGAGCTCTGAGTGGAGATaGACAATGCCAGCACAGATAAAGGCTGCCTTCAGCAAGGCCCCT +
Preference number: 1 (lower is better)
Translates to: KECNNCSSRGSSEWR*TMPAQIKAAFSKAP
Trigger: AGGGGCCTTGCTGAAGGCAGCCTTTATCTGTGCTGGCATTGTGCATCTCCACTCAGAGCTCCCTCTGCTTGAACAGTTGTTACACTCCTT
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000212971.2
3UTR GCA 90 bp TCTCAGCCACTGCCCACCATGAAGCACAGTACTGTTTGCAAACACTaGCTCTTCTGTCCAAGTCTTGCTTCCTTCCTTAGCAGCAGACTT +
Preference number: 1 (lower is better)
Translates to: SQPLPTMKHSTVCKH*LFCPSLASFLSSRL
Trigger: AAGTCTGCTGCTAAGGAAGGAAGCAAGACTTGGACAGAAGAGGCAGTGTTTGCAAACAGTACTGTGCTTCATGGTGGGCAGTGGCTGAGA
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000041382.7
ENSMUST00000212971.2
3UTR GCA 90 bp TGTCTTCTTGAAGAACTCATTCCAGGACATGTTGAGATACATGCCTaGCCCCTGTCTCTGGGGGAAGAGGAAGAAGCAGTCAGGAATGCA +
Preference number: 1 (lower is better)
Translates to: CLLEELIPGHVEIHA*PLSLGEEEEAVRNA
Trigger: TGCATTCCTGACTGCTTCTTCCTCTTCCCCCAGAGACAGGGGGCAGGCATGTATCTCAACATGTCCTGGAATGAGTTCTTCAAGAAGACA
50% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000212971.2
3UTR CCA 90 bp CCATTAAAGGAGTGTAACAACTGTTCAAGCAGAGGGAGCTCTGAGTaGAGATGCACAATGCCAGCACAGATAAAGGCTGCCTTCAGCAAG +
Preference number: 1 (lower is better)
Translates to: PLKECNNCSSRGSSE*RCTMPAQIKAAFSK
Trigger: CTTGCTGAAGGCAGCCTTTATCTGTGCTGGCATTGTGCATCTCCACTCAGAGCTCCCTCTGCTTGAACAGTTGTTACACTCCTTTAATGG
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000212971.2
3UTR-3UTR CCA 90 bp ACGGGGCCAGGACATCCATCATTCGCTGCACGGCCAGCGGCTCGCAGCCTGGGGACCTTGAGGGGCAGCTaGGCCCGGGAGCGCCCCACT +
Preference number: 2 (lower is better)
Translates to: TGPGHPSFAARPAARSLGTLRGS*ARERPT
Trigger: AGTGGGGCGCTCCCGGGCCCAGCTGCCCCTCAAGGT...CCCCAGGCTGCGAGCCGCTGGCCGTGCAGCGAATGATGGATGTCCTGGCCCCGT
71% GC, longest homopolymer 4 nt, total homopolymer stretches 16 nt.
Matches the following 1 transcripts:
ENSMUST00000212971.2
3UTR-3UTR CCA 90 bp ACAACGGGCAACCGAGCGTACCAGTTCCTCAGCACGTCCTGCAGCAGATTCCGGGGATGCGGCGTGCTTTaGCCCCGATGGGCCGGCGGC +
Preference number: 2 (lower is better)
Translates to: TTGNRAYQFLSTSCSRFRGCGVL*PRWAGG
Trigger: GCCGCCGGCCCATCGGGGCCAAAGCACGCCGCATCC...CCGGAATCTGCTGCAGGACGTGCTGAGGAACTGGTACGCTCGGTTGCCCGTTGT
67% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000212971.2
3UTR CAA 90 bp TCCACCTCCACCTTGAGGGGCAGCTGGGCCCGGGAGCGCCCCACTTaGATGCCAGGCATTAGGCCACTGACTTGGTCCTGCCAGCCACCT +
Preference number: 2 (lower is better)
Translates to: STSTLRGSWARERPT*MPGIRPLTWSCQPP
Trigger: AGGTGGCTGGCAGGACCAAGTCAGTGGCCTAATGCCTGGCATCAAAGTGGGGCGCTCCCGGGCCCAGCTGCCCCTCAAGGTGGAGGTGGA
66% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000212971.2
3UTR-3UTR GCA 90 bp GCAACCGAGCGTACCAGTTCCTCAGCACGTCCTGCAGCAGATTCCGGGCCAATCCTCCGGGATGCGGCGTaGTTTGGCCCCGATGGGCCG +
Preference number: 2 (lower is better)
Translates to: ATERTSSSARPAADSGPILRDAA*FGPDGP
Trigger: CGGCCCATCGGGGCCAAAGCACGCCGCATCCCGGAG...GATTGGCCCGGAATCTGCTGCAGGACGTGCTGAGGAACTGGTACGCTCGGTTGC
66% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000212971.2
3UTR-3UTR CCA 90 bp AGTTCCTCAGCACGTCCTGCAGCAGATTCCGGGCCAATCGGGTCTTGCCGGTATGTGCTTTGGCCCCGATaGGCCGGCGGCCATCCACCC +
Preference number: 2 (lower is better)
Translates to: SSSARPAADSGPIGSCRYVLWPR*AGGHPP
Trigger: GGGTGGATGGCCGCCGGCCCATCGGGGCCAAAGCAC...ATACCGGCAAGACCCGATTGGCCCGGAATCTGCTGCAGGACGTGCTGAGGAACT
64% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000212971.2
3UTR-3UTR GCA 90 bp GCCAGCAGGGGCCCAGAGCAACCTTCCCCGACAGCGGCCCGGATCAGTGGACGTACATGCCTTGCCTTCTaGAAGGCCTGGCAGAAGAAC +
Preference number: 2 (lower is better)
Translates to: ASRGPEQPSPTAARISGRTCLAF*KAWQKN
Trigger: GTTCTTCTGCCAGGCCTTGCAGAAGGCAAGGCATGT...ACGTCCACTGATCCGGGCCGCTGTCGGGGAAGGTTGCTCTGGGCCCCTGCTGGC
63% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000212971.2
3UTR-3UTR GCA 90 bp GCAACCGAGCGTACCAGTTCCTCAGCACGTCCTGCAGCAGATTCCGGGCCAATCGCCTCCTCGGCCCTCTaGCATGCAGCCCAGCACATC +
Preference number: 2 (lower is better)
Translates to: ATERTSSSARPAADSGPIASSAL*HAAQHI
Trigger: GATGTGCTGGGCTGCATGGCAGAGGGCCGAGGAGGC...GATTGGCCCGGAATCTGCTGCAGGACGTGCTGAGGAACTGGTACGCTCGGTTGC
63% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000212971.2
3UTR-3UTR GCA 90 bp TGGTTCACTACCACAGACCTGAGAACACACCTTCACTCTTCCCTGGCCCCTGCTAGCCTCCGTGCCCACTaGCCGGCCTGCAGCCCGCTG +
Preference number: 2 (lower is better)
Translates to: WFTTTDLRTHLHSSLAPASLRAH*PACSPL
Trigger: CAGCGGGCTGCAGGCCGGGCAGTGGGCACGGAGGCT...AGCAGGGGCCAGGGAAGAGTGAAGGTGTGTTCTCAGGTCTGTGGTAGTGAACCA
63% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000212971.2
3UTR-3UTR CCA 90 bp CCTGTGGTGAGCACCTGCTCCAGGTGCAGCACTGCGTGGATGAGAGCCTCCGTGCCTGCCCCCTGTCTCTaGGGGAAGAGGAAGAAGCAG +
Preference number: 2 (lower is better)
Translates to: PVVSTCSRCSTAWMRASVPAPCL*GKRKKQ
Trigger: CTGCTTCTTCCTCTTCCCCCAGAGACAGGGGGCAGG...CACGGAGGCTCTCATCCACGCAGTGCTGCACCTGGAGCAGGTGCTCACCACAGG
63% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000212971.2
3UTR-3UTR TCA 90 bp CCGACAGCGGCCCGGATCAGTGGACGTAGGCAGAGGTCCTGCCGCGCCTCTAACAGCCACTGCCCACCATaGAGCACAGTACTGTTTGCA +
Preference number: 2 (lower is better)
Translates to: PTAARISGRRQRSCRASNSHCPP*STVLFA
Trigger: TGCAAACAGTACTGTGCTTCATGGTGGGCAGTGGCT...GTTAGAGGCGCGGCAGGACCTCTGCCTACGTCCACTGATCCGGGCCGCTGTCGG
62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000212971.2
3UTR-3UTR TCA 90 bp TGTACCACAACGGGCAACCGAGCGTACCAGTTCCTCAGCACGTCCTGCAGCAGAGCAGCACTGCGTGGATaGGAGCCTCCGTGCCCACTG +
Preference number: 2 (lower is better)
Translates to: CTTTGNRAYQFLSTSCSRAALRG*EPPCPL
Trigger: CAGTGGGCACGGAGGCTCTCATCCACGCAGTGCTGC...TCTGCTGCAGGACGTGCTGAGGAACTGGTACGCTCGGTTGCCCGTTGTGGTACA
62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000212971.2
3UTR-3UTR GCA 90 bp TGTACCACAACGGGCAACCGAGCGTACCAGTTCCTCAGCACGTCCTGCAGCAGAAGCCAGAGCCCGGGCTaGCACGCCAGGATCTTCTGC +
Preference number: 2 (lower is better)
Translates to: CTTTGNRAYQFLSTSCSRSQSPG*HARIFC
Trigger: GCAGAAGATCCTGGCGTGGCAGCCCGGGCTCTGGCT...TCTGCTGCAGGACGTGCTGAGGAACTGGTACGCTCGGTTGCCCGTTGTGGTACA
62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000212971.2
3UTR-3UTR CCA 90 bp AGTTCCTCAGCACGTCCTGCAGCAGATTCCGGGCCAATCGGGTCTTGCCGGTATCTCAGGGTTGGCAGCTaGCCCACTGCGCAAGCCTCC +
Preference number: 2 (lower is better)
Translates to: SSSARPAADSGPIGSCRYLRVGS*PTAQAS
Trigger: GGAGGCTTGCGCAGTGGGCCAGCTGCCAACCCTGAG...ATACCGGCAAGACCCGATTGGCCCGGAATCTGCTGCAGGACGTGCTGAGGAACT
62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000212971.2
3UTR-3UTR CCA 90 bp CCGCACAGCCAGGCCCAACACTGCTCCACCAAGCTCATAGGCAATGGGCGGTGTGAATCCACTCAGGGTTaGCAGCTGGCCCACTGCGCA +
Preference number: 2 (lower is better)
Translates to: PHSQAQHCSTKLIGNGRCESTQG*QLAHCA
Trigger: TGCGCAGTGGGCCAGCTGCCAACCCTGAGTGGATTC...ACACCGCCCATTGCCTATGAGCTTGGTGGAGCAGTGTTGGGCCTGGCTGTGCGG
62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000212971.2
3UTR-3UTR TCA 90 bp CAGGCTCCGGCACACTATCCTCATGGTCATCTCATCCTGCCGAGGTCCCACTGCGGAAAAGGCGGGCAGTaGGGAGGCATCGATCTGAGG +
Preference number: 2 (lower is better)
Translates to: QAPAHYPHGHLILPRSHCGKGGQ*GGIDLR
Trigger: CCTCAGATCGATGCCTCCTCACTGCCCGCCTTTTCC...GCAGTGGGACCTCGGCAGGATGAGATGACCATGAGGATAGTGTGCCGGAGCCTG
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000212971.2
3UTR-3UTR CCA 90 bp CACTGCTCCACCAAGCTCATAGGCAATGGGCGGTGTGTCACTCCAGCCCCCAGACACTTCTCTCTCTCCTaGGCAAGCGCCTCCACACCC +
Preference number: 2 (lower is better)
Translates to: HCSTKLIGNGRCVTPAPRHFSLS*ASASTP
Trigger: GGGTGTGGAGGCGCTTGCCCAGGAGAGAGAGAAGTG...TCTGGGGGCTGGAGTGACACACCGCCCATTGCCTATGAGCTTGGTGGAGCAGTG
61% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000212971.2
3UTR-3UTR GCA 90 bp GCAACCGAGCGTACCAGTTCCTCAGCACGTCCTGCAGCAGATTCCGGGCCAATCCGGTCCACACAAGGTTaGAGCTGCTCCCAGGACAGA +
Preference number: 2 (lower is better)
Translates to: ATERTSSSARPAADSGPIRSTQG*SCSQDR
Trigger: TCTGTCCTGGGAGCAGCTGCAACCTTGTGTGGACCG...GATTGGCCCGGAATCTGCTGCAGGACGTGCTGAGGAACTGGTACGCTCGGTTGC
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000212971.2
3UTR-3UTR GCA 90 bp GCAACCGAGCGTACCAGTTCCTCAGCACGTCCTGCAGCAGATTCCGGGCCAATCCGCGCCTCTAACACATaGCTTGCCTTCTGCAAGGCC +
Preference number: 2 (lower is better)
Translates to: ATERTSSSARPAADSGPIRASNT*LAFCKA
Trigger: GGCCTTGCAGAAGGCAAGGCATGTGTTAGAGGCGCG...GATTGGCCCGGAATCTGCTGCAGGACGTGCTGAGGAACTGGTACGCTCGGTTGC
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000212971.2
3UTR CAA 90 bp TCAGTGGACGTAGGCAGAGGTCCTGCCGCGCCTCTAACACATGCCTaGCCTTCTGCAAGGCCTGGCAGAAGAACAGATCTCGGCGGAAGT +
Preference number: 2 (lower is better)
Translates to: SVDVGRGPAAPLTHA*PSARPGRRTDLGGS
Trigger: ACTTCCGCCGAGATCTGTTCTTCTGCCAGGCCTTGCAGAAGGCAAGGCATGTGTTAGAGGCGCGGCAGGACCTCTGCCTACGTCCACTGA
59% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000212971.2
3UTR-3UTR TCA 90 bp AGTTCCTCAGCACGTCCTGCAGCAGATTCCGGGCCAATCGGGTCTTGCCGGTATAGCCCTCAGGCACAGTaGTTTCCTCCACCTCCACCT +
Preference number: 2 (lower is better)
Translates to: SSSARPAADSGPIGSCRYSPQAQ*FPPPPP
Trigger: AGGTGGAGGTGGAGGAAATCACTGTGCCTGAGGGCT...ATACCGGCAAGACCCGATTGGCCCGGAATCTGCTGCAGGACGTGCTGAGGAACT
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000212971.2
3UTR-3UTR GCA 90 bp TCATGGTCATCTCATCCTGCCGAGGTCCCACTGCCAGCCAGAGCTCAGGCTCCGCTGATTGTCATCCTTTaGAGGGCCCTAGGAGGCCTA +
Preference number: 2 (lower is better)
Translates to: SWSSHPAEVPLPARAQAPLIVIL*RALGGL
Trigger: TAGGCCTCCTAGGGCCCTGCAAAGGATGACAATCAG...CGGAGCCTGAGCTCTGGCTGGCAGTGGGACCTCGGCAGGATGAGATGACCATGA
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000212971.2
3UTR-3UTR CCA 90 bp GGATCAGGATCTGCTCGGCCCCCTCGTAATGGCGGGCAGCTCGAACCAGCAAGGGCTTGCTGTAGACTGTaGCAGAGAGTGGTTCACTAC +
Preference number: 2 (lower is better)
Translates to: GSGSARPPRNGGQLEPARACCRL*QRVVHY
Trigger: GTAGTGAACCACTCTCTGCCACAGTCTACAGCAAGC...CCTTGCTGGTTCGAGCTGCCCGCCATTACGAGGGGGCCGAGCAGATCCTGATCC
59% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000212971.2
3UTR-3UTR CCA 90 bp TGTACCACAACGGGCAACCGAGCGTACCAGTTCCTCAGCACGTCCTGCAGCAGAAGAGGGAGCTCTGAGTaGAGATGCACAATGCCAGCA +
Preference number: 2 (lower is better)
Translates to: CTTTGNRAYQFLSTSCSRRGSSE*RCTMPA
Trigger: TGCTGGCATTGTGCATCTCCACTCAGAGCTCCCTCT...TCTGCTGCAGGACGTGCTGAGGAACTGGTACGCTCGGTTGCCCGTTGTGGTACA
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000212971.2
3UTR-3UTR TCA 90 bp CAGGCTCCGGCACACTATCCTCATGGTCATCTCATCCTGCCGAGGTCCCACTGCACCCCCAGGTTCCTTTaGCACTGTAGTGTTGTTAGA +
Preference number: 2 (lower is better)
Translates to: QAPAHYPHGHLILPRSHCTPRFL*HCSVVR
Trigger: TCTAACAACACTACAGTGTCAAAGGAACCTGGGGGT...GCAGTGGGACCTCGGCAGGATGAGATGACCATGAGGATAGTGTGCCGGAGCCTG
56% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000212971.2
3UTR-3UTR TCA 90 bp CAGGCTCCGGCACACTATCCTCATGGTCATCTCATCCTGCCGAGGTCCCACTGCAAGTATGAGAAAGGCTaGATCCACTCAGGGTTGGCA +
Preference number: 2 (lower is better)
Translates to: QAPAHYPHGHLILPRSHCKYEKG*IHSGLA
Trigger: TGCCAACCCTGAGTGGATTCAGCCTTTCTCATACTT...GCAGTGGGACCTCGGCAGGATGAGATGACCATGAGGATAGTGTGCCGGAGCCTG
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000212971.2
3UTR-3UTR CCA 90 bp GGTTATCAAAAGCTTGCTGTAGACTGTGGCAGAGAGTGGTTCACTACCACAGACGCCCCAGGGCCCTCGTaGGGTGGAGCACAGGGAAAA +
Preference number: 2 (lower is better)
Translates to: GYQKLAVDCGREWFTTTDAPGPS*GGAQGK
Trigger: TTTTCCCTGTGCTCCACCCCACGAGGGCCCTGGGGC...GTCTGTGGTAGTGAACCACTCTCTGCCACAGTCTACAGCAAGCTTTTGATAACC
56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000212971.2
3UTR-3UTR CCA 90 bp CTGCCCACCATGAAGCACAGTACTGTTTGCAAACACTGCCTCTTCTGTCCAAGTCTGCCAGGATGCTGCTaGTGCCAAGACCAGAGCCGT +
Preference number: 2 (lower is better)
Translates to: LPTMKHSTVCKHCLFCPSLPGCC*CQDQSR
Trigger: ACGGCTCTGGTCTTGGCACCAGCAGCATCCTGGCAG...ACTTGGACAGAAGAGGCAGTGTTTGCAAACAGTACTGTGCTTCATGGTGGGCAG
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000212971.2
3UTR CAA 90 bp GGTGTATCTGGGTCCCACAGGTCCCAGTCTCGAATGCCTGTCTTCTaGAAGAACTCATTCCAGGACATGTTGAGATACATGCCTGCCCCC +
Preference number: 2 (lower is better)
Translates to: GVSGSHRSQSRMPVF*KNSFQDMLRYMPAP
Trigger: GGGGGCAGGCATGTATCTCAACATGTCCTGGAATGAGTTCTTCAAGAAGACAGGCATTCGAGACTGGGACCTGTGGGACCCAGATACACC
53% GC, longest homopolymer 5 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000212971.2
3UTR-3UTR GCA 90 bp CAGGCTCCGGCACACTATCCTCATGGTCATCTCATCCTGCCGAGGTCCCACTGCACTGTTTGCAAACACTaGCTCTTCTGTCCAAGTCTT +
Preference number: 2 (lower is better)
Translates to: QAPAHYPHGHLILPRSHCTVCKH*LFCPSL
Trigger: AAGACTTGGACAGAAGAGGCAGTGTTTGCAAACAGT...GCAGTGGGACCTCGGCAGGATGAGATGACCATGAGGATAGTGTGCCGGAGCCTG
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000212971.2
3UTR-3UTR TCA 90 bp GCTTCTTCTGCTCCCAGTATGAGGTCAGGTACTGTCCCAGCAGAGGCAGGTTTCTCACTACCACAGACCTaGGAACACACCTTCACTCTT +
Preference number: 2 (lower is better)
Translates to: ASSAPSMRSGTVPAEAGFSLPQT*EHTFTL
Trigger: AAGAGTGAAGGTGTGTTCTCAGGTCTGTGGTAGTGA...GAAACCTGCCTCTGCTGGGACAGTACCTGACCTCATACTGGGAGCAGAAGAAGC
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000212971.2
3UTR CAA 90 bp CAGTCTCGAATGCCTGTCTTCTTGAAGAACTCATTCCAGGACATGTaGAGATACATGCCTGCCCCCTGTCTCTGGGGGAAGAGGAAGAAG +
Preference number: 2 (lower is better)
Translates to: QSRMPVFLKNSFQDM*RYMPAPCLWGKRKK
Trigger: CTTCTTCCTCTTCCCCCAGAGACAGGGGGCAGGCATGTATCTCAACATGTCCTGGAATGAGTTCTTCAAGAAGACAGGCATTCGAGACTG
51% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 1 transcripts:
ENSMUST00000212971.2
3UTR-3UTR TCA 90 bp CACTACCACAGACCTGAGAACACACCTTCACTCTTCCCTGGCCCCTGCTGTAGATCTTTAGAGTTGGTCTaGTTGTCATCCTTTGCAGGG +
Preference number: 2 (lower is better)
Translates to: HYHRPENTPSLFPGPCCRSLELV*LSSFAG
Trigger: CCCTGCAAAGGATGACAATCAGACCAACTCTAAAGA...TCTACAGCAGGGGCCAGGGAAGAGTGAAGGTGTGTTCTCAGGTCTGTGGTAGTG
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000041382.7
ENSMUST00000212971.2
3UTR-3UTR TCA 90 bp GAGAACCCACTACCCCCAGGTTCCTTTGACACTGTAGTGTTGTTAGAAAGGCTTAGCCACTGCCCACCATaGAGCACAGTACTGTTTGCA +
Preference number: 2 (lower is better)
Translates to: ENPLPPGSFDTVVLLERLSHCPP*STVLFA
Trigger: TGCAAACAGTACTGTGCTTCATGGTGGGCAGTGGCT...AAGCCTTTCTAACAACACTACAGTGTCAAAGGAACCTGGGGGTAGTGGGTTCTC
50% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000041382.7
ENSMUST00000212971.2
3UTR-3UTR GCA 90 bp TCCAAGGATGCGGGTGTTGAGAACCCACTACCCCCAGGTTCCTTTGACACTGTAAAGCACAGTACTGTTTaGAAACACTGCCTCTTCTGT +
Preference number: 2 (lower is better)
Translates to: SKDAGVENPLPPGSFDTVKHSTV*KHCLFC
Trigger: ACAGAAGAGGCAGTGTTTGCAAACAGTACTGTGCTT...TACAGTGTCAAAGGAACCTGGGGGTAGTGGGTTCTCAACACCCGCATCCTTGGA
49% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000041382.7
ENSMUST00000212971.2
3UTR-3UTR GCA 90 bp CCTAGGAGGCCTACACTGGGCCATGGAATTTGTAGAGTGCACATGAGACACTGTACTGTTTGCAAACACTaGCTCTTCTGTCCAAGTCTT +
Preference number: 2 (lower is better)
Translates to: PRRPTLGHGICRVHMRHCTVCKH*LFCPSL
Trigger: AAGACTTGGACAGAAGAGGCAGTGTTTGCAAACAGT...ACAGTGTCTCATGTGCACTCTACAAATTCCATGGCCCAGTGTAGGCCTCCTAGG
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000041382.7
ENSMUST00000212971.2
3UTR-3UTR CCA 90 bp AGGCTTAGGTTATCAAAAGCTTGCTGTAGACTGTGGCAGAGAGTGGTTCACTACGCTTGCTGTAGACTGTaGCAGAGAGTGGTTCACTAC +
Preference number: 2 (lower is better)
Translates to: RLRLSKACCRLWQRVVHYACCRL*QRVVHY
Trigger: GTAGTGAACCACTCTCTGCCACAGTCTACAGCAAGC...GTAGTGAACCACTCTCTGCCACAGTCTACAGCAAGCTTTTGATAACCTAAGCCT
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000041382.7
ENSMUST00000212971.2
3UTR-3UTR TCA 90 bp CCACCATTAAAGGAGTGTAACAACTGTTCAAGCAGAGGGAGCTCTGAGTGGAGATCTTTAGAGTTGGTCTaGTTGTCATCCTTTGCAGGG +
Preference number: 2 (lower is better)
Translates to: PPLKECNNCSSRGSSEWRSLELV*LSSFAG
Trigger: CCCTGCAAAGGATGACAATCAGACCAACTCTAAAGA...TCTCCACTCAGAGCTCCCTCTGCTTGAACAGTTGTTACACTCCTTTAATGGTGG
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000212971.2
3UTR-3UTR GCA 90 bp GAATTTATTCCAAGGATGCGGGTGTTGAGAACCCACTACCCCCAGGTTCCTTTGAAGCACAGTACTGTTTaGAAACACTGCCTCTTCTGT +
Preference number: 2 (lower is better)
Translates to: EFIPRMRVLRTHYPQVPLKHSTV*KHCLFC
Trigger: ACAGAAGAGGCAGTGTTTGCAAACAGTACTGTGCTT...CAAAGGAACCTGGGGGTAGTGGGTTCTCAACACCCGCATCCTTGGAATAAATTC
47% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000041382.7
ENSMUST00000212971.2
3UTR-3UTR GCA 90 bp ACAAACTTGAAAATTAGAATTTATTCCAAGGATGCGGGTGTTGAGAACCCACTAAGCTCTGACCACGTGTaGAGCTCAAAGCCACCATTA +
Preference number: 2 (lower is better)
Translates to: TNLKIRIYSKDAGVENPLSSDHV*SSKPPL
Trigger: TAATGGTGGCTTTGAGCTGCACACGTGGTCAGAGCT...TAGTGGGTTCTCAACACCCGCATCCTTGGAATAAATTCTAATTTTCAAGTTTGT
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000212971.2
3UTR-3UTR TCA 90 bp ACAAACTTGAAAATTAGAATTTATTCCAAGGATGCGGGTGTTGAGAACCCACTATGGTATGGGAATGCCTaGAAGTCTATCTTTAGAGTT +
Preference number: 2 (lower is better)
Translates to: TNLKIRIYSKDAGVENPLWYGNA*KSIFRV
Trigger: AACTCTAAAGATAGACTTTCAGGCATTCCCATACCA...TAGTGGGTTCTCAACACCCGCATCCTTGGAATAAATTCTAATTTTCAAGTTTGT
38% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000212971.2
3UTR CCA 72 bp GCTCAGGCTCCGGGATGCGGCGTGCTTTGGCCCCGATaGGCCGGCGGCCATCCACCCGCACAGCCAGGCCCA +
Preference number: 3 (lower is better)
Translates to: AQAPGCGVLWPR*AGGHPPAQPGP
Trigger: TGGGCCTGGCTGTGCGGGTGGATGGCCGCCGGCCCATCGGGGCCAAAGCACGCCGCATCCCGGAGCCTGAGC
75% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000212971.2
3UTR CCA 72 bp CCCACTGCCCGGGTGCGGGCAGCTCCACGGGCTGGGTaGAGACGAAGTGCCGGGCTGTCATCACAGCCTGGC +
Preference number: 3 (lower is better)
Translates to: PTARVRAAPRAG*RRSAGLSSQPG
Trigger: GCCAGGCTGTGATGACAGCCCGGCACTTCGTCTCCACCCAGCCCGTGGAGCTGCCCGCACCCGGGCAGTGGG
72% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000212971.2
3UTR CCA 72 bp ACCACCCACTGCCCGGGTGCGGGCAGCTCCACGGGCTaGGTGGAGACGAAGTGCCGGGCTGTCATCACAGCC +
Preference number: 3 (lower is better)
Translates to: TTHCPGAGSSTG*VETKCRAVITA
Trigger: GGCTGTGATGACAGCCCGGCACTTCGTCTCCACCCAGCCCGTGGAGCTGCCCGCACCCGGGCAGTGGGTGGT
71% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000212971.2
3UTR-3UTR CAA 90 bp TGGGCACTCAGTCACCACCCACTGCCCGGGTGCGGGCAGCTCCACGGGCTGGGTGCCCCAGCTGCAACCTaGTCAAGTGTGGCCAGCAGG +
Preference number: 3 (lower is better)
Translates to: WALSHHPLPGCGQLHGLGAPAAT*SSVASR
Trigger: CCTGCTGGCCACACTTGACAAGGTTGCAGCTGGGGC...ACCCAGCCCGTGGAGCTGCCCGCACCCGGGCAGTGGGTGGTGACTGAGTGCCCA
69% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000212971.2
3UTR GCA 72 bp CTGGCCCACTGCGCAAGCCTCCTCGGCCCTCTGCCATaGAGCCCAGCACATCGGCCACACAAGCCAGAGCCC +
Preference number: 3 (lower is better)
Translates to: LAHCASLLGPLP*SPAHRPHKPEP
Trigger: GGGCTCTGGCTTGTGTGGCCGATGTGCTGGGCTGCATGGCAGAGGGCCGAGGAGGCTTGCGCAGTGGGCCAG
69% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000212971.2
3UTR GCA 72 bp CCCACTGAAGGGACGCGCAGCTGCAGCTCTAGGTGGTaGCCACTTCAGAGGGCCCGGCCCCACAAAGACGGG +
Preference number: 3 (lower is better)
Translates to: PTEGTRSCSSRW*PLQRARPHKDG
Trigger: CCCGTCTTTGTGGGGCCGGGCCCTCTGAAGTGGGCACCACCTAGAGCTGCAGCTGCGCGTCCCTTCAGTGGG
68% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000212971.2
3UTR-3UTR CAA 90 bp CAGCCTTGGCCAGGACAGCTTCCAGAGTCTCTTTCTGCCGGGGTTCCTTGGTCAGGGATGCGGCGTGCTTaGGCCCCGATGGGCCGGCGG +
Preference number: 3 (lower is better)
Translates to: QPWPGQLPESLSAGVPWSGMRRA*APMGRR
Trigger: CCGCCGGCCCATCGGGGCCAAAGCACGCCGCATCCC...TGACCAAGGAACCCCGGCAGAAAGAGACTCTGGAAGCTGTCCTGGCCAAGGCTG
67% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000212971.2
3UTR GCA 72 bp CCGGCGGCCATCCACCCGCACAGCCAGGCCCAACACTaGTCCACCAAGCTCATAGGCAATGGGCGGTGTGTC +
Preference number: 3 (lower is better)
Translates to: PAAIHPHSQAQH*STKLIGNGRCV
Trigger: GACACACCGCCCATTGCCTATGAGCTTGGTGGAGCAGTGTTGGGCCTGGCTGTGCGGGTGGATGGCCGCCGG
67% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000212971.2
3UTR CCA 72 bp TGTGTCACTCCAGCCCCCAGAGAAATCCACACGGGCTaGGCACTCAGTCACCACCCACTGCCCGGGTGCGGG +
Preference number: 3 (lower is better)
Translates to: CVTPAPREIHTG*ALSHHPLPGCG
Trigger: CCCGCACCCGGGCAGTGGGTGGTGACTGAGTGCCCAGCCCGTGTGGATTTCTCTGGGGGCTGGAGTGACACA
67% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000212971.2
3UTR GCA 72 bp CCATACGCATACGGGGCCAGGACATCCATCATTCGCTaGACGGCCAGCGGCTCGCAGCCTGGGGCCATAAGC +
Preference number: 3 (lower is better)
Translates to: PYAYGARTSIIR*TASGSQPGAIS
Trigger: GCTTATGGCCCCAGGCTGCGAGCCGCTGGCCGTGCAGCGAATGATGGATGTCCTGGCCCCGTATGCGTATGG
65% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000212971.2
3UTR CCA 72 bp CCCGCAGGTCATCCAGGCTCCGGCACACTATCCTCATaGTCATCTCATCCTGCCGAGGTCCCACTGCCAGCC +
Preference number: 3 (lower is better)
Translates to: PAGHPGSGTLSS*SSHPAEVPLPA
Trigger: GGCTGGCAGTGGGACCTCGGCAGGATGAGATGACCATGAGGATAGTGTGCCGGAGCCTGGATGACCTGCGGG
64% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000212971.2
3UTR-3UTR CAA 90 bp TGGGCACTCAGTCACCACCCACTGCCCGGGTGCGGGCAGCTCCACGGGCTGGGTTCTTCTGTCCAAGTCTaGCTTCCTTCCTTAGCAGCA +
Preference number: 3 (lower is better)
Translates to: WALSHHPLPGCGQLHGLGSSVQV*LPSLAA
Trigger: TGCTGCTAAGGAAGGAAGCAAGACTTGGACAGAAGA...ACCCAGCCCGTGGAGCTGCCCGCACCCGGGCAGTGGGTGGTGACTGAGTGCCCA
62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000212971.2
3UTR GCA 72 bp AGGCTCCGGCACACTATCCTCATGGTCATCTCATCCTaGCGAGGTCCCACTGCCAGCCAGAGCTCAGGCTCC +
Preference number: 3 (lower is better)
Translates to: RLRHTILMVISS*RGPTASQSSGS
Trigger: GGAGCCTGAGCTCTGGCTGGCAGTGGGACCTCGGCAGGATGAGATGACCATGAGGATAGTGTGCCGGAGCCT
62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000212971.2
3UTR GCA 72 bp ACGGGCAACCGAGCGTACCAGTTCCTCAGCACGTCCTaGAGCAGATTCCGGGCCAATCGGGTCTTGCCGGTA +
Preference number: 3 (lower is better)
Translates to: TGNRAYQFLSTS*SRFRANRVLPV
Trigger: TACCGGCAAGACCCGATTGGCCCGGAATCTGCTGCAGGACGTGCTGAGGAACTGGTACGCTCGGTTGCCCGT
62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000212971.2
3UTR GCA 72 bp GATAACAAAGTGAGCCCCACTGAAGGGACGCGCAGCTaGAGCTCTAGGTGGTGCCCACTTCAGAGGGCCCGG +
Preference number: 3 (lower is better)
Translates to: DNKVSPTEGTRS*SSRWCPLQRAR
Trigger: CCGGGCCCTCTGAAGTGGGCACCACCTAGAGCTGCAGCTGCGCGTCCCTTCAGTGGGGCTCACTTTGTTATC
62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000212971.2
3UTR CCA 72 bp CCTGGCAGAAGAACAGATCTCGGCGGAAGTCCAGTGTaGCAGCCCGGTCCACACAAGGTTGCAGCTGCTCCC +
Preference number: 3 (lower is better)
Translates to: PGRRTDLGGSPV*QPGPHKVAAAP
Trigger: GGGAGCAGCTGCAACCTTGTGTGGACCGGGCTGCCACACTGGACTTCCGCCGAGATCTGTTCTTCTGCCAGG
62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000212971.2
3UTR CCA 72 bp AGCAAGGCAGGCCTGGTCAGCCACTTCTCTCTCTCCTaGGCAAGCGCCTCCACACCCCTCATCAGGTCTCCA +
Preference number: 3 (lower is better)
Translates to: SKAGLVSHFSLS*ASASTPLIRSP
Trigger: TGGAGACCTGATGAGGGGTGTGGAGGCGCTTGCCCAGGAGAGAGAGAAGTGGCTGACCAGGCCTGCCTTGCT
62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000212971.2
3UTR CCA 72 bp ACAGTGATTTCCTCCACCTCCACCTTGAGGGGCAGCTaGGCCCGGGAGCGCCCCACTTTGATGCCAGGCATT +
Preference number: 3 (lower is better)
Translates to: TVISSTSTLRGS*ARERPTLMPGI
Trigger: AATGCCTGGCATCAAAGTGGGGCGCTCCCGGGCCCAGCTGCCCCTCAAGGTGGAGGTGGAGGAAATCACTGT
62% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000212971.2
3UTR-3UTR CAA 90 bp GCAACCGAGCGTACCAGTTCCTCAGCACGTCCTGCAGCAGATTCCGGGCCAATCCCAAGGATGCGGGTGTaGAGAACCCACTACCCCCAG +
Preference number: 3 (lower is better)
Translates to: ATERTSSSARPAADSGPIPRMRV*RTHYPQ
Trigger: CTGGGGGTAGTGGGTTCTCAACACCCGCATCCTTGG...GATTGGCCCGGAATCTGCTGCAGGACGTGCTGAGGAACTGGTACGCTCGGTTGC
61% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000212971.2
3UTR CCA 72 bp CCAGGTGGACACTGTAGTTGCCAAGGCCCTCAGCCTTaGCCAGGACAGCTTCCAGAGTCTCTTTCTGCCGGG +
Preference number: 3 (lower is better)
Translates to: PGGHCSCQGPQP*PGQLPESLSAG
Trigger: CCCGGCAGAAAGAGACTCTGGAAGCTGTCCTGGCCAAGGCTGAGGGCCTTGGCAACTACAGTGTCCACCTGG
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000212971.2
3UTR TCA 72 bp GCTGCTGGTGCCAAGACCAGAGCCGTGCGGCAGCTCTaGCCACGTGTGCAGCTCAAAGCCACCATTAAAGGA +
Preference number: 3 (lower is better)
Translates to: AAGAKTRAVRQL*PRVQLKATIKG
Trigger: TCCTTTAATGGTGGCTTTGAGCTGCACACGTGGTCAGAGCTGCCGCACGGCTCTGGTCTTGGCACCAGCAGC
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000212971.2
3UTR GCA 72 bp GGACGTAGGCAGAGGTCCTGCCGCGCCTCTAACACATaGCTTGCCTTCTGCAAGGCCTGGCAGAAGAACAGA +
Preference number: 3 (lower is better)
Translates to: GRRQRSCRASNT*LAFCKAWQKNR
Trigger: TCTGTTCTTCTGCCAGGCCTTGCAGAAGGCAAGGCATGTGTTAGAGGCGCGGCAGGACCTCTGCCTACGTCC
60% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000212971.2
3UTR GCA 72 bp CCTGAGGATCCACTTCCACCAGGTGGACACTGTAGTTaGCAAGGCCCTCAGCCTTGGCCAGGACAGCTTCCA +
Preference number: 3 (lower is better)
Translates to: PEDPLPPGGHCS*QGPQPWPGQLP
Trigger: TGGAAGCTGTCCTGGCCAAGGCTGAGGGCCTTGGCAACTACAGTGTCCACCTGGTGGAAGTGGATCCTCAGG
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000212971.2
3UTR CCA 72 bp CCAGGCCCAACACTGCTCCACCAAGCTCATAGGCAATaGGCGGTGTGTCACTCCAGCCCCCAGAGAAATCCA +
Preference number: 3 (lower is better)
Translates to: PGPTLLHQAHRQ*AVCHSSPQRNP
Trigger: TGGATTTCTCTGGGGGCTGGAGTGACACACCGCCCATTGCCTATGAGCTTGGTGGAGCAGTGTTGGGCCTGG
60% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000212971.2
3UTR CCA 72 bp GAGGTCAGGTACTGTCCCAGCAGAGGCAGGTTTCCTTaGCGGAAAGCTTCAGCGCACTTCTCGGTCTGTCGC +
Preference number: 3 (lower is better)
Translates to: EVRYCPSRGRFP*RKASAHFSVCR
Trigger: GCGACAGACCGAGAAGTGCGCTGAAGCTTTCCGCCAAGGAAACCTGCCTCTGCTGGGACAGTACCTGACCTC
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000212971.2
3UTR-3UTR CAA 90 bp CCTTGGCGGAAAGCTTCAGCGCACTTCTCGGTCTGTCGCACCAGTCTGCGGGCAAGGAGCAGATGGTCATaGATCTTCTGGACAAAGCCC +
Preference number: 3 (lower is better)
Translates to: PWRKASAHFSVCRTSLRARSRWS*IFWTKP
Trigger: GGGCTTTGTCCAGAAGATCAATGACCATCTGCTCCT...TGCCCGCAGACTGGTGCGACAGACCGAGAAGTGCGCTGAAGCTTTCCGCCAAGG
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000212971.2
3UTR-3UTR CAA 90 bp CCTTGGCGGAAAGCTTCAGCGCACTTCTCGGTCTGTCGCACCAGTCTGCGGGCAGAAGCACAGTACTGTTaGCAAACACTGCCTCTTCTG +
Preference number: 3 (lower is better)
Translates to: PWRKASAHFSVCRTSLRAEAQYC*QTLPLL
Trigger: CAGAAGAGGCAGTGTTTGCAAACAGTACTGTGCTTC...TGCCCGCAGACTGGTGCGACAGACCGAGAAGTGCGCTGAAGCTTTCCGCCAAGG
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000212971.2
3UTR TCA 72 bp CTCATCAGGTCTCCACACTCCAAGTATGAGAAAGGCTaGATCCACTCAGGGTTGGCAGCTGGCCCACTGCGC +
Preference number: 3 (lower is better)
Translates to: LIRSPHSKYEKG*IHSGLAAGPLR
Trigger: GCGCAGTGGGCCAGCTGCCAACCCTGAGTGGATTCAGCCTTTCTCATACTTGGAGTGTGGAGACCTGATGAG
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000212971.2
3UTR CCA 72 bp CAGGACATGTTGAGATACATGCCTGCCCCCTGTCTCTaGGGGAAGAGGAAGAAGCAGTCAGGAATGCAGGGG +
Preference number: 3 (lower is better)
Translates to: QDMLRYMPAPCL*GKRKKQSGMQG
Trigger: CCCCTGCATTCCTGACTGCTTCTTCCTCTTCCCCCAGAGACAGGGGGCAGGCATGTATCTCAACATGTCCTG
57% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000212971.2
3UTR CCA 72 bp GGACAGCTTCCAGAGTCTCTTTCTGCCGGGGTTCCTTaGTCAATAGATAGAGAAAGCCCCCACCACCTGCCC +
Preference number: 3 (lower is better)
Translates to: GQLPESLSAGVP*SIDRESPHHLP
Trigger: GGGCAGGTGGTGGGGGCTTTCTCTATCTATTGACCAAGGAACCCCGGCAGAAAGAGACTCTGGAAGCTGTCC
57% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000212971.2
3UTR-3UTR CAA 90 bp TTCACTACCACAGACCTGAGAACACACCTTCACTCTTCCCTGGCCCCTGCTGTATCTGATTGTCATCCTTaGCAGGGCCCTAGGAGGCCT +
Preference number: 3 (lower is better)
Translates to: FTTTDLRTHLHSSLAPAVSDCHP*QGPRRP
Trigger: AGGCCTCCTAGGGCCCTGCAAAGGATGACAATCAGA...TACAGCAGGGGCCAGGGAAGAGTGAAGGTGTGTTCTCAGGTCTGTGGTAGTGAA
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000041382.7
ENSMUST00000212971.2
3UTR-3UTR CAA 90 bp GTGGTTCACTACCACAGACCTGAGAACACACCTTCACTCTTCCCTGGCCCCTGCTCTTCTGTCCAAGTCTaGCTTCCTTCCTTAGCAGCA +
Preference number: 3 (lower is better)
Translates to: VVHYHRPENTPSLFPGPCSSVQV*LPSLAA
Trigger: TGCTGCTAAGGAAGGAAGCAAGACTTGGACAGAAGA...GCAGGGGCCAGGGAAGAGTGAAGGTGTGTTCTCAGGTCTGTGGTAGTGAACCAC
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000041382.7
ENSMUST00000212971.2
3UTR-3UTR CAA 90 bp GCAGTAATCCCGCAGGTCATCCAGGCTCCGGCACACTATCCTCATGGTCATCTCCGAATGCCTGTCTTCTaGAAGAACTCATTCCAGGAC +
Preference number: 3 (lower is better)
Translates to: AVIPQVIQAPAHYPHGHLRMPVF*KNSFQD
Trigger: GTCCTGGAATGAGTTCTTCAAGAAGACAGGCATTCG...GAGATGACCATGAGGATAGTGTGCCGGAGCCTGGATGACCTGCGGGATTACTGC
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000212971.2
3UTR GCA 72 bp AACAACTGTTCAAGCAGAGGGAGCTCTGAGTGGAGATaGACAATGCCAGCACAGATAAAGGCTGCCTTCAGC +
Preference number: 3 (lower is better)
Translates to: NNCSSRGSSEWR*TMPAQIKAAFS
Trigger: GCTGAAGGCAGCCTTTATCTGTGCTGGCATTGTGCATCTCCACTCAGAGCTCCCTCTGCTTGAACAGTTGTT
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000212971.2
3UTR CCA 72 bp GAGTGTAACAACTGTTCAAGCAGAGGGAGCTCTGAGTaGAGATGCACAATGCCAGCACAGATAAAGGCTGCC +
Preference number: 3 (lower is better)
Translates to: ECNNCSSRGSSE*RCTMPAQIKAA
Trigger: GGCAGCCTTTATCTGTGCTGGCATTGTGCATCTCCACTCAGAGCTCCCTCTGCTTGAACAGTTGTTACACTC
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000212971.2
3UTR-3UTR CAA 90 bp GGTTATCAAAAGCTTGCTGTAGACTGTGGCAGAGAGTGGTTCACTACCACAGACTCATTCCAGGACATGTaGAGATACATGCCTGCCCCC +
Preference number: 3 (lower is better)
Translates to: GYQKLAVDCGREWFTTTDSFQDM*RYMPAP
Trigger: GGGGGCAGGCATGTATCTCAACATGTCCTGGAATGA...GTCTGTGGTAGTGAACCACTCTCTGCCACAGTCTACAGCAAGCTTTTGATAACC
50% GC, longest homopolymer 5 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000212971.2
3UTR GCA 72 bp CTGCCCACCATGAAGCACAGTACTGTTTGCAAACACTaGCTCTTCTGTCCAAGTCTTGCTTCCTTCCTTAGC +
Preference number: 3 (lower is better)
Translates to: LPTMKHSTVCKH*LFCPSLASFLS
Trigger: GCTAAGGAAGGAAGCAAGACTTGGACAGAAGAGGCAGTGTTTGCAAACAGTACTGTGCTTCATGGTGGGCAG
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000041382.7
ENSMUST00000212971.2
3UTR GCA 72 bp AAGTCTATCTTTAGAGTTGGTCTGATTGTCATCCTTTaGAGGGCCCTAGGAGGCCTACACTGGGCCATGGAA +
Preference number: 3 (lower is better)
Translates to: KSIFRVGLIVIL*RALGGLHWAME
Trigger: TTCCATGGCCCAGTGTAGGCCTCCTAGGGCCCTGCAAAGGATGACAATCAGACCAACTCTAAAGATAGACTT
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000041382.7
ENSMUST00000212971.2
3UTR-3UTR CAA 90 bp TATTCCAAGGATGCGGGTGTTGAGAACCCACTACCCCCAGGTTCCTTTGACACTGCTGTAGAATCAGAGTaGGTATGGGAATGCCTGAAA +
Preference number: 3 (lower is better)
Translates to: YSKDAGVENPLPPGSFDTAVESE*VWECLK
Trigger: TTTCAGGCATTCCCATACCAACTCTGATTCTACAGC...AGTGTCAAAGGAACCTGGGGGTAGTGGGTTCTCAACACCCGCATCCTTGGAATA
49% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000041382.7
ENSMUST00000212971.2
3UTR TCA 72 bp GGCCTACACTGGGCCATGGAATTTGTAGAGTGCACATaGGACACTGTGACTAAGACCTCCCTTAATCCAGAT +
Preference number: 3 (lower is better)
Translates to: GLHWAMEFVECT*DTVTKTSLNPD
Trigger: ATCTGGATTAAGGGAGGTCTTAGTCACAGTGTCTCATGTGCACTCTACAAATTCCATGGCCCAGTGTAGGCC
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000041382.7
ENSMUST00000212971.2
3UTR CCA 72 bp GGTTATCAAAAGCTTGCTGTAGACTGTGGCAGAGAGTaGTTCACTACCACAGACCTGAGAACACACCTTCAC +
Preference number: 3 (lower is better)
Translates to: GYQKLAVDCGRE*FTTTDLRTHLH
Trigger: GTGAAGGTGTGTTCTCAGGTCTGTGGTAGTGAACCACTCTCTGCCACAGTCTACAGCAAGCTTTTGATAACC
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000041382.7
ENSMUST00000212971.2
3UTR-3UTR CAA 90 bp GAGAACCCACTACCCCCAGGTTCCTTTGACACTGTAGTGTTGTTAGAAAGGCTTGAAGCACAGTACTGTTaGCAAACACTGCCTCTTCTG +
Preference number: 3 (lower is better)
Translates to: ENPLPPGSFDTVVLLERLEAQYC*QTLPLL
Trigger: CAGAAGAGGCAGTGTTTGCAAACAGTACTGTGCTTC...AAGCCTTTCTAACAACACTACAGTGTCAAAGGAACCTGGGGGTAGTGGGTTCTC
48% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000041382.7
ENSMUST00000212971.2
3UTR GCA 72 bp GTAGTGTTGTTAGAAAGGCTTAGGTTATCAAAAGCTTaGTGTAGACTGTGGCAGAGAGTGGTTCACTACCAC +
Preference number: 3 (lower is better)
Translates to: VVLLERLRLSKA*CRLWQRVVHYH
Trigger: GTGGTAGTGAACCACTCTCTGCCACAGTCTACAGCAAGCTTTTGATAACCTAAGCCTTTCTAACAACACTAC
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000041382.7
ENSMUST00000212971.2
3UTR-3UTR CAA 90 bp TTGAAAATTAGAATTTATTCCAAGGATGCGGGTGTTGAGAACCCACTACCCCCATTTGACACTGTAGTGTaGTTAGAAAGGCTTAGGTTA +
Preference number: 3 (lower is better)
Translates to: LKIRIYSKDAGVENPLPPFDTVV*LERLRL
Trigger: TAACCTAAGCCTTTCTAACAACACTACAGTGTCAAA...TGGGGGTAGTGGGTTCTCAACACCCGCATCCTTGGAATAAATTCTAATTTTCAA
40% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000041382.7
ENSMUST00000212971.2
CDS-3UTR TCA 90 bp GCCAGCAGGGGCCCAGAGCAACCTTCCCCGACAGCGGCCCGGATCAGTGGACGTCCACCAGCAGTGCGTTaGGGGTGGCTCCTCCGCTGC +
Preference number: 4 (lower is better)
Translates to: ASRGPEQPSPTAARISGRPPAVR*GWLLRC
Trigger: GCAGCGGAGGAGCCACCCTCAACGCACTGCTGGTGG...ACGTCCACTGATCCGGGCCGCTGTCGGGGAAGGTTGCTCTGGGCCCCTGCTGGC
70% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 1 transcripts:
ENSMUST00000212971.2
CDS-3UTR CCA 90 bp TGCCCGGGTGCGGGCAGCTCCACGGGCTGGGTGGAGACGAAGTGCCGGGCTGTCGCAGACCCACACACCTaGTGGGGAACCTGGACCCAG +
Preference number: 4 (lower is better)
Translates to: CPGAGSSTGWVETKCRAVADPHT*WGTWTQ
Trigger: CTGGGTCCAGGTTCCCCACCAGGTGTGTGGGTCTGC...GACAGCCCGGCACTTCGTCTCCACCCAGCCCGTGGAGCTGCCCGCACCCGGGCA
70% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000212971.2
CDS-3UTR GCA 90 bp TGCCCGGGTGCGGGCAGCTCCACGGGCTGGGTGGAGACGAAGTGCCGGGCTGTCGTCCCCGCAGGAATCTaGTCCCGTCTCTGCCTTACC +
Preference number: 4 (lower is better)
Translates to: CPGAGSSTGWVETKCRAVVPAGI*SRLCLT
Trigger: GGTAAGGCAGAGACGGGAGCAGATTCCTGCGGGGAC...GACAGCCCGGCACTTCGTCTCCACCCAGCCCGTGGAGCTGCCCGCACCCGGGCA
69% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000212971.2
CDS-3UTR CCA 90 bp GGTGCGGGCAGCTCCACGGGCTGGGTGGAGACGAAGTGCCGGGCTGTCATCACAGACAGCTGCACAGGCTaGGCTCCAGAGTCCAAGCCC +
Preference number: 4 (lower is better)
Translates to: GAGSSTGWVETKCRAVITDSCTG*APESKP
Trigger: GGGCTTGGACTCTGGAGCCCAGCCTGTGCAGCTGTC...TGTGATGACAGCCCGGCACTTCGTCTCCACCCAGCCCGTGGAGCTGCCCGCACC
67% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000212971.2
CDS-3UTR GCA 90 bp TGGGCCCGGGAGCGCCCCACTTTGATGCCAGGCATTAGGCCACTGACTTGGTCCAGCAGCCAGCGCCGATaGGAATGGGGCCCCTCAGGT +
Preference number: 4 (lower is better)
Translates to: WARERPTLMPGIRPLTWSSSQRR*EWGPSG
Trigger: ACCTGAGGGGCCCCATTCGCATCGGCGCTGGCTGCT...GGACCAAGTCAGTGGCCTAATGCCTGGCATCAAAGTGGGGCGCTCCCGGGCCCA
66% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 1 transcripts:
ENSMUST00000212971.2
3UTR CAA 72 bp ACCTTGAGGGGCAGCTGGGCCCGGGAGCGCCCCACTTaGATGCCAGGCATTAGGCCACTGACTTGGTCCTGC +
Preference number: 4 (lower is better)
Translates to: TLRGSWARERPT*MPGIRPLTWSC
Trigger: GCAGGACCAAGTCAGTGGCCTAATGCCTGGCATCAAAGTGGGGCGCTCCCGGGCCCAGCTGCCCCTCAAGGT
65% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000212971.2
CDS-3UTR TCA 90 bp CCTGTGGTGAGCACCTGCTCCAGGTGCAGCACTGCGTGGATGAGAGCCTCCGTGATGGGGCCCCTCAGGTaGCAGTGCTGCAGGACACTT +
Preference number: 4 (lower is better)
Translates to: PVVSTCSRCSTAWMRASVMGPLR*QCCRTL
Trigger: AAGTGTCCTGCAGCACTGTCACCTGAGGGGCCCCAT...CACGGAGGCTCTCATCCACGCAGTGCTGCACCTGGAGCAGGTGCTCACCACAGG
63% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000212971.2
CDS-3UTR GCA 90 bp TGGGCCCGGGAGCGCCCCACTTTGATGCCAGGCATTAGGCCACTGACTTGGTCCCCAAGCCCATATAGGTaGAGGCATCCAGCGGTGGGC +
Preference number: 4 (lower is better)
Translates to: WARERPTLMPGIRPLTWSPSPYR*RHPAVG
Trigger: GCCCACCGCTGGATGCCTGCACCTATATGGGCTTGG...GGACCAAGTCAGTGGCCTAATGCCTGGCATCAAAGTGGGGCGCTCCCGGGCCCA
63% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000212971.2
CDS-3UTR CCA 90 bp GTGGTTCACTACCACAGACCTGAGAACACACCTTCACTCTTCCCTGGCCCCTGCGTGCTTTGGCCCCGATaGGCCGGCGGCCATCCACCC +
Preference number: 4 (lower is better)
Translates to: VVHYHRPENTPSLFPGPCVLWPR*AGGHPP
Trigger: GGGTGGATGGCCGCCGGCCCATCGGGGCCAAAGCAC...GCAGGGGCCAGGGAAGAGTGAAGGTGTGTTCTCAGGTCTGTGGTAGTGAACCAC
63% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000041382.7
CDS-3UTR GCA 90 bp GGCTCAGGCCCTGAGGATCCACTTCCACCAGGTGGACACTGTAGTTGCCAAGGCTGGAGCTCCAGGCCATaGAGTGCCTCCGAGTGGGCT +
Preference number: 4 (lower is better)
Translates to: GSGPEDPLPPGGHCSCQGWSSRP*SASEWA
Trigger: AGCCCACTCGGAGGCACTGCATGGCCTGGAGCTCCA...GCCTTGGCAACTACAGTGTCCACCTGGTGGAAGTGGATCCTCAGGGCCTGAGCC
62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000212971.2
CDS-3UTR GCA 90 bp CACTACCACAGACCTGAGAACACACCTTCACTCTTCCCTGGCCCCTGCTGTAGACTCCGGGATGCGGCGTaGTTTGGCCCCGATGGGCCG +
Preference number: 4 (lower is better)
Translates to: HYHRPENTPSLFPGPCCRLRDAA*FGPDGP
Trigger: CGGCCCATCGGGGCCAAAGCACGCCGCATCCCGGAG...TCTACAGCAGGGGCCAGGGAAGAGTGAAGGTGTGTTCTCAGGTCTGTGGTAGTG
62% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000041382.7
CDS-3UTR CCA 90 bp ACCACAGACCTGAGAACACACCTTCACTCTTCCCTGGCCCCTGCTGTAGAATCAGGATGCGGCGTGCTTTaGCCCCGATGGGCCGGCGGC +
Preference number: 4 (lower is better)
Translates to: TTDLRTHLHSSLAPAVESGCGVL*PRWAGG
Trigger: GCCGCCGGCCCATCGGGGCCAAAGCACGCCGCATCC...TGATTCTACAGCAGGGGCCAGGGAAGAGTGAAGGTGTGTTCTCAGGTCTGTGGT
62% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000041382.7
CDS-3UTR GCA 90 bp CCTGTGGTGAGCACCTGCTCCAGGTGCAGCACTGCGTGGATGAGAGCCTCCGTGGGCATCGTGAGTCTGTaGAGGAACTCGGTGGCATCA +
Preference number: 4 (lower is better)
Translates to: PVVSTCSRCSTAWMRASVGIVSL*RNSVAS
Trigger: TGATGCCACCGAGTTCCTGCACAGACTCACGATGCC...CACGGAGGCTCTCATCCACGCAGTGCTGCACCTGGAGCAGGTGCTCACCACAGG
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000212971.2
CDS-3UTR GCA 90 bp GCAACCGAGCGTACCAGTTCCTCAGCACGTCCTGCAGCAGATTCCGGGCCAATCCTCCAGGCCATGCAGTaGCTCCGAGTGGGCTGTATC +
Preference number: 4 (lower is better)
Translates to: ATERTSSSARPAADSGPILQAMQ*LRVGCI
Trigger: GATACAGCCCACTCGGAGGCACTGCATGGCCTGGAG...GATTGGCCCGGAATCTGCTGCAGGACGTGCTGAGGAACTGGTACGCTCGGTTGC
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000212971.2
CDS-3UTR CCA 90 bp ACCACAGACCTGAGAACACACCTTCACTCTTCCCTGGCCCCTGCTGTAGAATCAACCTTGAGGGGCAGCTaGGCCCGGGAGCGCCCCACT +
Preference number: 4 (lower is better)
Translates to: TTDLRTHLHSSLAPAVESTLRGS*ARERPT
Trigger: AGTGGGGCGCTCCCGGGCCCAGCTGCCCCTCAAGGT...TGATTCTACAGCAGGGGCCAGGGAAGAGTGAAGGTGTGTTCTCAGGTCTGTGGT
61% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 1 transcripts:
ENSMUST00000041382.7
CDS-3UTR TCA 90 bp GTGCCAAGACCAGAGCCGTGCGGCAGCTCTGACCACGTGTGCAGCTCAAAGCCAACCTCCAGCTCTCTCTaGAAGACCTGGACACTGTCC +
Preference number: 4 (lower is better)
Translates to: VPRPEPCGSSDHVCSSKPTSSSL*KTWTLS
Trigger: GGACAGTGTCCAGGTCTTTCAGAGAGAGCTGGAGGT...TGGCTTTGAGCTGCACACGTGGTCAGAGCTGCCGCACGGCTCTGGTCTTGGCAC
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000212971.2
CDS-3UTR TCA 90 bp GTGCCAAGACCAGAGCCGTGCGGCAGCTCTGACCACGTGTGCAGCTCAAAGCCATCCTCCACCTGGGAGTaGACAATCTGTGCCACAGCT +
Preference number: 4 (lower is better)
Translates to: VPRPEPCGSSDHVCSSKPSSTWE*TICATA
Trigger: AGCTGTGGCACAGATTGTTCACTCCCAGGTGGAGGA...TGGCTTTGAGCTGCACACGTGGTCAGAGCTGCCGCACGGCTCTGGTCTTGGCAC
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000212971.2
CDS-3UTR GCA 90 bp GGCTCAGGCCCTGAGGATCCACTTCCACCAGGTGGACACTGTAGTTGCCAAGGCAGGATCCAGGCAGAGTaGAGGACATCGGACGTGACC +
Preference number: 4 (lower is better)
Translates to: GSGPEDPLPPGGHCSCQGRIQAE*RTSDVT
Trigger: GGTCACGTCCGATGTCCTGCACTCTGCCTGGATCCT...GCCTTGGCAACTACAGTGTCCACCTGGTGGAAGTGGATCCTCAGGGCCTGAGCC
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000212971.2
CDS-3UTR GCA 90 bp TGCGGCAGCTCTGACCACGTGTGCAGCTCAAAGCCACCATTAAAGGAGTGTAACCTTCGAGGCCCCAGGTaGACAGGGCCCTCGAGCAGG +
Preference number: 4 (lower is better)
Translates to: CGSSDHVCSSKPPLKECNLRGPR*TGPSSR
Trigger: CCTGCTCGAGGGCCCTGTGCACCTGGGGCCTCGAAG...GTTACACTCCTTTAATGGTGGCTTTGAGCTGCACACGTGGTCAGAGCTGCCGCA
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000212971.2
CDS-3UTR GCA 90 bp TGGTTCACTACCACAGACCTGAGAACACACCTTCACTCTTCCCTGGCCCCTGCTAGCCAGAGCCCGGGCTaGCACGCCAGGATCTTCTGC +
Preference number: 4 (lower is better)
Translates to: WFTTTDLRTHLHSSLAPASQSPG*HARIFC
Trigger: GCAGAAGATCCTGGCGTGGCAGCCCGGGCTCTGGCT...AGCAGGGGCCAGGGAAGAGTGAAGGTGTGTTCTCAGGTCTGTGGTAGTGAACCA
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000041382.7
CDS-3UTR GCA 90 bp ACTGCCCACCATGAAGCACAGTACTGTTTGCAAACACTGCCTCTTCTGTCCAAGAGCCTCCGTGCCCACTaGCCGGCCTGCAGCCCGCTG +
Preference number: 4 (lower is better)
Translates to: TAHHEAQYCLQTLPLLSKSLRAH*PACSPL
Trigger: CAGCGGGCTGCAGGCCGGGCAGTGGGCACGGAGGCT...CTTGGACAGAAGAGGCAGTGTTTGCAAACAGTACTGTGCTTCATGGTGGGCAGT
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000041382.7
CDS-3UTR CCA 90 bp GTGGAGATGCACAATGCCAGCACAGATAAAGGCTGCCTTCAGCAAGGCCCCTGGCTCCACAGGGGCCTGTaGGTTCTCCACAGGGAGGCA +
Preference number: 4 (lower is better)
Translates to: VEMHNASTDKGCLQQGPWLHRGL*VLHREA
Trigger: TGCCTCCCTGTGGAGAACCCACAGGCCCCTGTGGAG...CCAGGGGCCTTGCTGAAGGCAGCCTTTATCTGTGCTGGCATTGTGCATCTCCAC
60% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000212971.2
CDS-3UTR CCA 90 bp CACTGCTCCACCAAGCTCATAGGCAATGGGCGGTGTGTCACTCCAGCCCCCAGATGCAGTGCCTCCGAGTaGGCTGTATCCAGACCACTC +
Preference number: 4 (lower is better)
Translates to: HCSTKLIGNGRCVTPAPRCSASE*AVSRPL
Trigger: GAGTGGTCTGGATACAGCCCACTCGGAGGCACTGCA...TCTGGGGGCTGGAGTGACACACCGCCCATTGCCTATGAGCTTGGTGGAGCAGTG
60% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000212971.2
CDS-3UTR TCA 90 bp TATTCCAAGGATGCGGGTGTTGAGAACCCACTACCCCCAGGTTCCTTTGACACTCCACCAGCAGTGCGTTaGGGGTGGCTCCTCCGCTGC +
Preference number: 4 (lower is better)
Translates to: YSKDAGVENPLPPGSFDTPPAVR*GWLLRC
Trigger: GCAGCGGAGGAGCCACCCTCAACGCACTGCTGGTGG...AGTGTCAAAGGAACCTGGGGGTAGTGGGTTCTCAACACCCGCATCCTTGGAATA
59% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000041382.7
ENSMUST00000212971.2
CDS-3UTR TCA 90 bp TGGTTCACTACCACAGACCTGAGAACACACCTTCACTCTTCCCTGGCCCCTGCTTGCAGGCTCAGGCCCTaGGGATCCACTTCCACCAGG +
Preference number: 4 (lower is better)
Translates to: WFTTTDLRTHLHSSLAPACRLRP*GSTSTR
Trigger: CCTGGTGGAAGTGGATCCTCAGGGCCTGAGCCTGCA...AGCAGGGGCCAGGGAAGAGTGAAGGTGTGTTCTCAGGTCTGTGGTAGTGAACCA
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000041382.7
CDS-3UTR GCA 90 bp TGTACCACAACGGGCAACCGAGCGTACCAGTTCCTCAGCACGTCCTGCAGCAGAGAAGCATGTCGGTGCTaGAGACCCACACACCTGGTG +
Preference number: 4 (lower is better)
Translates to: CTTTGNRAYQFLSTSCSREACRC*RPTHLV
Trigger: CACCAGGTGTGTGGGTCTGCAGCACCGACATGCTTC...TCTGCTGCAGGACGTGCTGAGGAACTGGTACGCTCGGTTGCCCGTTGTGGTACA
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000212971.2
CDS-3UTR GCA 90 bp ACAGACCTGAGAACACACCTTCACTCTTCCCTGGCCCCTGCTGTAGAATCAGAGAGCAGCCAGCGCCGATaGGAATGGGGCCCCTCAGGT +
Preference number: 4 (lower is better)
Translates to: TDLRTHLHSSLAPAVESESSQRR*EWGPSG
Trigger: ACCTGAGGGGCCCCATTCGCATCGGCGCTGGCTGCT...CTCTGATTCTACAGCAGGGGCCAGGGAAGAGTGAAGGTGTGTTCTCAGGTCTGT
59% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 2 transcripts:
ENSMUST00000041382.7
ENSMUST00000212971.2
CDS-3UTR GCA 90 bp ACAGACCTGAGAACACACCTTCACTCTTCCCTGGCCCCTGCTGTAGAATCAGAGCTCGGCCCTCTGCCATaGAGCCCAGCACATCGGCCA +
Preference number: 4 (lower is better)
Translates to: TDLRTHLHSSLAPAVESELGPLP*SPAHRP
Trigger: TGGCCGATGTGCTGGGCTGCATGGCAGAGGGCCGAG...CTCTGATTCTACAGCAGGGGCCAGGGAAGAGTGAAGGTGTGTTCTCAGGTCTGT
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000041382.7
CDS-3UTR GCA 90 bp GAGAACCCACTACCCCCAGGTTCCTTTGACACTGTAGTGTTGTTAGAAAGGCTTCACCCACTGCCCGGGTaGGGGCAGCTCCACGGGCTG +
Preference number: 4 (lower is better)
Translates to: ENPLPPGSFDTVVLLERLHPLPG*GQLHGL
Trigger: CAGCCCGTGGAGCTGCCCGCACCCGGGCAGTGGGTG...AAGCCTTTCTAACAACACTACAGTGTCAAAGGAACCTGGGGGTAGTGGGTTCTC
59% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000041382.7
CDS-3UTR GCA 90 bp TGGTTCACTACCACAGACCTGAGAACACACCTTCACTCTTCCCTGGCCCCTGCTCCAGGATGCTGCTGGTaGCAAGACCAGAGCCGTGCG +
Preference number: 4 (lower is better)
Translates to: WFTTTDLRTHLHSSLAPAPGCCW*QDQSRA
Trigger: CGCACGGCTCTGGTCTTGGCACCAGCAGCATCCTGG...AGCAGGGGCCAGGGAAGAGTGAAGGTGTGTTCTCAGGTCTGTGGTAGTGAACCA
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000041382.7
CDS-3UTR GCA 90 bp TCCAAGGATGCGGGTGTTGAGAACCCACTACCCCCAGGTTCCTTTGACACTGTACCCACCACCTGCCCCTaGCAGGCTTTGGCCATACGC +
Preference number: 4 (lower is better)
Translates to: SKDAGVENPLPPGSFDTVPTTCP*QALAIR
Trigger: GCGTATGGCCAAAGCCTGGCAGGGGCAGGTGGTGGG...TACAGTGTCAAAGGAACCTGGGGGTAGTGGGTTCTCAACACCCGCATCCTTGGA
59% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000041382.7
CDS-3UTR CCA 90 bp TTCACTACCACAGACCTGAGAACACACCTTCACTCTTCCCTGGCCCCTGCTGTAGCCCCAGGGCCCTCGTaGGGTGGAGCACAGGGAAAA +
Preference number: 4 (lower is better)
Translates to: FTTTDLRTHLHSSLAPAVAPGPS*GGAQGK
Trigger: TTTTCCCTGTGCTCCACCCCACGAGGGCCCTGGGGC...TACAGCAGGGGCCAGGGAAGAGTGAAGGTGTGTTCTCAGGTCTGTGGTAGTGAA
59% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000041382.7
CDS-3UTR GCA 90 bp CACTACCACAGACCTGAGAACACACCTTCACTCTTCCCTGGCCCCTGCTGTAGACCAAGCCCATATAGGTaGAGGCATCCAGCGGTGGGC +
Preference number: 4 (lower is better)
Translates to: HYHRPENTPSLFPGPCCRPSPYR*RHPAVG
Trigger: GCCCACCGCTGGATGCCTGCACCTATATGGGCTTGG...TCTACAGCAGGGGCCAGGGAAGAGTGAAGGTGTGTTCTCAGGTCTGTGGTAGTG
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000041382.7
ENSMUST00000212971.2
CDS-3UTR GCA 90 bp ACTGCCCACCATGAAGCACAGTACTGTTTGCAAACACTGCCTCTTCTGTCCAAGCTTCGAGGCCCCAGGTaGACAGGGCCCTCGAGCAGG +
Preference number: 4 (lower is better)
Translates to: TAHHEAQYCLQTLPLLSKLRGPR*TGPSSR
Trigger: CCTGCTCGAGGGCCCTGTGCACCTGGGGCCTCGAAG...CTTGGACAGAAGAGGCAGTGTTTGCAAACAGTACTGTGCTTCATGGTGGGCAGT
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000041382.7
ENSMUST00000212971.2
CDS-3UTR CCA 90 bp TTCACTACCACAGACCTGAGAACACACCTTCACTCTTCCCTGGCCCCTGCTGTACTCCACAGGGGCCTGTaGGTTCTCCACAGGGAGGCA +
Preference number: 4 (lower is better)
Translates to: FTTTDLRTHLHSSLAPAVLHRGL*VLHREA
Trigger: TGCCTCCCTGTGGAGAACCCACAGGCCCCTGTGGAG...TACAGCAGGGGCCAGGGAAGAGTGAAGGTGTGTTCTCAGGTCTGTGGTAGTGAA
58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000041382.7
ENSMUST00000212971.2
CDS-3UTR CCA 90 bp CACTACCACAGACCTGAGAACACACCTTCACTCTTCCCTGGCCCCTGCTGTAGACTTCAGCAAGGCCCCTaGGGCATGAGGCTGGCAGTA +
Preference number: 4 (lower is better)
Translates to: HYHRPENTPSLFPGPCCRLQQGP*GMRLAV
Trigger: TACTGCCAGCCTCATGCCCCAGGGGCCTTGCTGAAG...TCTACAGCAGGGGCCAGGGAAGAGTGAAGGTGTGTTCTCAGGTCTGTGGTAGTG
58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000041382.7
3UTR CAA 72 bp GTAGGCAGAGGTCCTGCCGCGCCTCTAACACATGCCTaGCCTTCTGCAAGGCCTGGCAGAAGAACAGATCTC +
Preference number: 4 (lower is better)
Translates to: VGRGPAAPLTHA*PSARPGRRTDL
Trigger: GAGATCTGTTCTTCTGCCAGGCCTTGCAGAAGGCAAGGCATGTGTTAGAGGCGCGGCAGGACCTCTGCCTAC
58% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000212971.2
CDS-3UTR TCA 90 bp CAAGTCTCAGCCACTGCCCACCATGAAGCACAGTACTGTTTGCAAACACTGCCTGCCGTGCGGCAGCTCTaGCCACGTGTGCAGCTCAAA +
Preference number: 4 (lower is better)
Translates to: QVSATAHHEAQYCLQTLPAVRQL*PRVQLK
Trigger: TTTGAGCTGCACACGTGGTCAGAGCTGCCGCACGGC...AGGCAGTGTTTGCAAACAGTACTGTGCTTCATGGTGGGCAGTGGCTGAGACTTG
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000041382.7
CDS-3UTR TCA 90 bp CTGCCCACCATGAAGCACAGTACTGTTTGCAAACACTGCCTCTTCTGTCCAAGTGCAGCACTGCGTGGATaGGAGCCTCCGTGCCCACTG +
Preference number: 4 (lower is better)
Translates to: LPTMKHSTVCKHCLFCPSAALRG*EPPCPL
Trigger: CAGTGGGCACGGAGGCTCTCATCCACGCAGTGCTGC...ACTTGGACAGAAGAGGCAGTGTTTGCAAACAGTACTGTGCTTCATGGTGGGCAG
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000041382.7
CDS-3UTR TCA 90 bp CAAGTCTCAGCCACTGCCCACCATGAAGCACAGTACTGTTTGCAAACACTGCCTAGCCACCTCCTGTGGTaGGCACCTGCTCCAGGTGCA +
Preference number: 4 (lower is better)
Translates to: QVSATAHHEAQYCLQTLPSHLLW*APAPGA
Trigger: TGCACCTGGAGCAGGTGCTCACCACAGGAGGTGGCT...AGGCAGTGTTTGCAAACAGTACTGTGCTTCATGGTGGGCAGTGGCTGAGACTTG
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000041382.7
CDS-3UTR TCA 90 bp TTCACTACCACAGACCTGAGAACACACCTTCACTCTTCCCTGGCCCCTGCTGTACAGGCATTAGGCCACTaGCTTGGTCCTGCCAGCCAC +
Preference number: 4 (lower is better)
Translates to: FTTTDLRTHLHSSLAPAVQALGH*LGPASH
Trigger: GTGGCTGGCAGGACCAAGTCAGTGGCCTAATGCCTG...TACAGCAGGGGCCAGGGAAGAGTGAAGGTGTGTTCTCAGGTCTGTGGTAGTGAA
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000041382.7
CDS-3UTR GCA 90 bp ACCACAGACCTGAGAACACACCTTCACTCTTCCCTGGCCCCTGCTGTAGAATCAGTCCCCGCAGGAATCTaGTCCCGTCTCTGCCTTACC +
Preference number: 4 (lower is better)
Translates to: TTDLRTHLHSSLAPAVESVPAGI*SRLCLT
Trigger: GGTAAGGCAGAGACGGGAGCAGATTCCTGCGGGGAC...TGATTCTACAGCAGGGGCCAGGGAAGAGTGAAGGTGTGTTCTCAGGTCTGTGGT
57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000041382.7
ENSMUST00000212971.2
CDS-3UTR GCA 90 bp TGGTTCACTACCACAGACCTGAGAACACACCTTCACTCTTCCCTGGCCCCTGCTTGGGTGGCTAGGAGGTaGTCAGCAGTCTCCACAGAG +
Preference number: 4 (lower is better)
Translates to: WFTTTDLRTHLHSSLAPAWVARR*SAVSTE
Trigger: CTCTGTGGAGACTGCTGAGCACCTCCTAGCCACCCA...AGCAGGGGCCAGGGAAGAGTGAAGGTGTGTTCTCAGGTCTGTGGTAGTGAACCA
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000041382.7
ENSMUST00000212971.2
CDS-3UTR GCA 90 bp CAGGCTCCGGCACACTATCCTCATGGTCATCTCATCCTGCCGAGGTCCCACTGCGGAGTGAACAATCTGTaGCACAGCTACTCCAGGCAT +
Preference number: 4 (lower is better)
Translates to: QAPAHYPHGHLILPRSHCGVNNL*HSYSRH
Trigger: ATGCCTGGAGTAGCTGTGGCACAGATTGTTCACTCC...GCAGTGGGACCTCGGCAGGATGAGATGACCATGAGGATAGTGTGCCGGAGCCTG
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000212971.2
CDS-3UTR GCA 90 bp GGTTATCAAAAGCTTGCTGTAGACTGTGGCAGAGAGTGGTTCACTACCACAGACAGCCAGGGCAGCCCCTaGCAGGATGCTGCTGGTGCC +
Preference number: 4 (lower is better)
Translates to: GYQKLAVDCGREWFTTTDSQGSP*QDAAGA
Trigger: GGCACCAGCAGCATCCTGGCAGGGGCTGCCCTGGCT...GTCTGTGGTAGTGAACCACTCTCTGCCACAGTCTACAGCAAGCTTTTGATAACC
57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000041382.7
CDS-3UTR GCA 90 bp CCTAGGAGGCCTACACTGGGCCATGGAATTTGTAGAGTGCACATGAGACACTGTCCTGTGGTGAGCACCTaGTCCAGGTGCAGCACTGCG +
Preference number: 4 (lower is better)
Translates to: PRRPTLGHGICRVHMRHCPVVST*SRCSTA
Trigger: CGCAGTGCTGCACCTGGAGCAGGTGCTCACCACAGG...ACAGTGTCTCATGTGCACTCTACAAATTCCATGGCCCAGTGTAGGCCTCCTAGG
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000041382.7
CDS-3UTR CCA 90 bp GGCCAAGTCTCAGCCACTGCCCACCATGAAGCACAGTACTGTTTGCAAACACTGGAAAGGCGATCACTCTaGCTCCCCGGAAGCCATCCC +
Preference number: 4 (lower is better)
Translates to: GQVSATAHHEAQYCLQTLERRSL*LPGSHP
Trigger: GGGATGGCTTCCGGGGAGCCAGAGTGATCGCCTTTC...CAGTGTTTGCAAACAGTACTGTGCTTCATGGTGGGCAGTGGCTGAGACTTGGCC
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000041382.7
ENSMUST00000212971.2
CDS-3UTR CCA 90 bp TCCAAGGATGCGGGTGTTGAGAACCCACTACCCCCAGGTTCCTTTGACACTGTACTGCCAGGATGCTGCTaGTGCCAAGACCAGAGCCGT +
Preference number: 4 (lower is better)
Translates to: SKDAGVENPLPPGSFDTVLPGCC*CQDQSR
Trigger: ACGGCTCTGGTCTTGGCACCAGCAGCATCCTGGCAG...TACAGTGTCAAAGGAACCTGGGGGTAGTGGGTTCTCAACACCCGCATCCTTGGA
57% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000041382.7
CDS-3UTR CCA 90 bp TATTCCAAGGATGCGGGTGTTGAGAACCCACTACCCCCAGGTTCCTTTGACACTAGGTGCAGCACTGCGTaGATGAGAGCCTCCGTGCCC +
Preference number: 4 (lower is better)
Translates to: YSKDAGVENPLPPGSFDTRCSTA*MRASVP
Trigger: GGGCACGGAGGCTCTCATCCACGCAGTGCTGCACCT...AGTGTCAAAGGAACCTGGGGGTAGTGGGTTCTCAACACCCGCATCCTTGGAATA
57% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000041382.7
CDS-3UTR TCA 90 bp TGGTTCACTACCACAGACCTGAGAACACACCTTCACTCTTCCCTGGCCCCTGCTACCTCCAGCTCTCTCTaGAAGACCTGGACACTGTCC +
Preference number: 4 (lower is better)
Translates to: WFTTTDLRTHLHSSLAPATSSSL*KTWTLS
Trigger: GGACAGTGTCCAGGTCTTTCAGAGAGAGCTGGAGGT...AGCAGGGGCCAGGGAAGAGTGAAGGTGTGTTCTCAGGTCTGTGGTAGTGAACCA
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000041382.7
ENSMUST00000212971.2
CDS-3UTR TCA 90 bp CACTACCACAGACCTGAGAACACACCTTCACTCTTCCCTGGCCCCTGCTGTAGAAGCCCTGTGAGTCAGTaGGGTAGACACCGTGGTTCA +
Preference number: 4 (lower is better)
Translates to: HYHRPENTPSLFPGPCCRSPVSQ*GRHRGS
Trigger: TGAACCACGGTGTCTACCTCACTGACTCACAGGGCT...TCTACAGCAGGGGCCAGGGAAGAGTGAAGGTGTGTTCTCAGGTCTGTGGTAGTG
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000041382.7
ENSMUST00000212971.2
CDS-3UTR GCA 90 bp AGAGGCCAAGTCTCAGCCACTGCCCACCATGAAGCACAGTACTGTTTGCAAACACTCCAGGCCATGCAGTaGCTCCGAGTGGGCTGTATC +
Preference number: 4 (lower is better)
Translates to: RGQVSATAHHEAQYCLQTLQAMQ*LRVGCI
Trigger: GATACAGCCCACTCGGAGGCACTGCATGGCCTGGAG...TGTTTGCAAACAGTACTGTGCTTCATGGTGGGCAGTGGCTGAGACTTGGCCTCT
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000041382.7
ENSMUST00000212971.2
CDS-3UTR GCA 90 bp GGCCAAGTCTCAGCCACTGCCCACCATGAAGCACAGTACTGTTTGCAAACACTGCGGTCCACACAAGGTTaGAGCTGCTCCCAGGACAGA +
Preference number: 4 (lower is better)
Translates to: GQVSATAHHEAQYCLQTLRSTQG*SCSQDR
Trigger: TCTGTCCTGGGAGCAGCTGCAACCTTGTGTGGACCG...CAGTGTTTGCAAACAGTACTGTGCTTCATGGTGGGCAGTGGCTGAGACTTGGCC
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000041382.7
CDS-3UTR GCA 90 bp GGCCAAGTCTCAGCCACTGCCCACCATGAAGCACAGTACTGTTTGCAAACACTGGGTGGACACTGTAGTTaGCAAGGCCCTCAGCCTTGG +
Preference number: 4 (lower is better)
Translates to: GQVSATAHHEAQYCLQTLGGHCS*QGPQPW
Trigger: CCAAGGCTGAGGGCCTTGGCAACTACAGTGTCCACC...CAGTGTTTGCAAACAGTACTGTGCTTCATGGTGGGCAGTGGCTGAGACTTGGCC
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000041382.7
CDS-3UTR CCA 90 bp TATTCCAAGGATGCGGGTGTTGAGAACCCACTACCCCCAGGTTCCTTTGACACTAGCGGTGGGCTCACATaGGTGGCTAGGAGGTGCTCA +
Preference number: 4 (lower is better)
Translates to: YSKDAGVENPLPPGSFDTSGGLT*VARRCS
Trigger: TGAGCACCTCCTAGCCACCCATGTGAGCCCACCGCT...AGTGTCAAAGGAACCTGGGGGTAGTGGGTTCTCAACACCCGCATCCTTGGAATA
56% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000041382.7
ENSMUST00000212971.2
CDS-3UTR CCA 90 bp ACTGCCCACCATGAAGCACAGTACTGTTTGCAAACACTGCCTCTTCTGTCCAAGGACAGCTGCACAGGCTaGGCTCCAGAGTCCAAGCCC +
Preference number: 4 (lower is better)
Translates to: TAHHEAQYCLQTLPLLSKDSCTG*APESKP
Trigger: GGGCTTGGACTCTGGAGCCCAGCCTGTGCAGCTGTC...CTTGGACAGAAGAGGCAGTGTTTGCAAACAGTACTGTGCTTCATGGTGGGCAGT
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000041382.7
ENSMUST00000212971.2
CDS-3UTR CCA 90 bp GCTTCTTCTGCTCCCAGTATGAGGTCAGGTACTGTCCCAGCAGAGGCAGGTTTCCACCAGGCGAGAGACTaGGGAACAGATGCTCCAAAG +
Preference number: 4 (lower is better)
Translates to: ASSAPSMRSGTVPAEAGFHQARD*GTDAPK
Trigger: CTTTGGAGCATCTGTTCCCCAGTCTCTCGCCTGGTG...GAAACCTGCCTCTGCTGGGACAGTACCTGACCTCATACTGGGAGCAGAAGAAGC
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000212971.2
CDS-3UTR GCA 90 bp ACCACAGACCTGAGAACACACCTTCACTCTTCCCTGGCCCCTGCTGTAGAATCAACAGGCAGTCCAGGTTaGATACCAAGGCCTCCACAG +
Preference number: 4 (lower is better)
Translates to: TTDLRTHLHSSLAPAVESTGSPG*IPRPPQ
Trigger: CTGTGGAGGCCTTGGTATGCAACCTGGACTGCCTGT...TGATTCTACAGCAGGGGCCAGGGAAGAGTGAAGGTGTGTTCTCAGGTCTGTGGT
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000041382.7
ENSMUST00000212971.2
CDS-3UTR GCA 90 bp AGAGGCCAAGTCTCAGCCACTGCCCACCATGAAGCACAGTACTGTTTGCAAACAATGGTCATCTCATCCTaGCGAGGTCCCACTGCCAGC +
Preference number: 4 (lower is better)
Translates to: RGQVSATAHHEAQYCLQTMVISS*RGPTAS
Trigger: GCTGGCAGTGGGACCTCGGCAGGATGAGATGACCAT...TGTTTGCAAACAGTACTGTGCTTCATGGTGGGCAGTGGCTGAGACTTGGCCTCT
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000041382.7
CDS-3UTR GCA 90 bp GAGAACCCACTACCCCCAGGTTCCTTTGACACTGTAGTGTTGTTAGAAAGGCTTCAGCCCCTGCCAGGATaGTGCTGGTGCCAAGACCAG +
Preference number: 4 (lower is better)
Translates to: ENPLPPGSFDTVVLLERLQPLPG*CWCQDQ
Trigger: CTGGTCTTGGCACCAGCAGCATCCTGGCAGGGGCTG...AAGCCTTTCTAACAACACTACAGTGTCAAAGGAACCTGGGGGTAGTGGGTTCTC
54% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000041382.7
CDS-3UTR CCA 90 bp GAATTTATTCCAAGGATGCGGGTGTTGAGAACCCACTACCCCCAGGTTCCTTTGGAAAGGCGATCACTCTaGCTCCCCGGAAGCCATCCC +
Preference number: 4 (lower is better)
Translates to: EFIPRMRVLRTHYPQVPLERRSL*LPGSHP
Trigger: GGGATGGCTTCCGGGGAGCCAGAGTGATCGCCTTTC...CAAAGGAACCTGGGGGTAGTGGGTTCTCAACACCCGCATCCTTGGAATAAATTC
54% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000041382.7
ENSMUST00000212971.2
CDS-3UTR CCA 90 bp CTGCCCACCATGAAGCACAGTACTGTTTGCAAACACTGCCTCTTCTGTCCAAGTGACCCCGGAGACCAATaGTACCAGCCCATCAGGTCC +
Preference number: 4 (lower is better)
Translates to: LPTMKHSTVCKHCLFCPSDPGDQ*YQPIRS
Trigger: GGACCTGATGGGCTGGTACCATTGGTCTCCGGGGTC...ACTTGGACAGAAGAGGCAGTGTTTGCAAACAGTACTGTGCTTCATGGTGGGCAG
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000041382.7
ENSMUST00000212971.2
CDS-3UTR CCA 90 bp GAATTTATTCCAAGGATGCGGGTGTTGAGAACCCACTACCCCCAGGTTCCTTTGAGCGGTGGGCTCACATaGGTGGCTAGGAGGTGCTCA +
Preference number: 4 (lower is better)
Translates to: EFIPRMRVLRTHYPQVPLSGGLT*VARRCS
Trigger: TGAGCACCTCCTAGCCACCCATGTGAGCCCACCGCT...CAAAGGAACCTGGGGGTAGTGGGTTCTCAACACCCGCATCCTTGGAATAAATTC
54% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000041382.7
ENSMUST00000212971.2
CDS-3UTR CCA 90 bp CCTAGGAGGCCTACACTGGGCCATGGAATTTGTAGAGTGCACATGAGACACTGTGCTGTCATCACAGCCTaGCGGATCAGGATCTGCTCG +
Preference number: 4 (lower is better)
Translates to: PRRPTLGHGICRVHMRHCAVITA*RIRICS
Trigger: CGAGCAGATCCTGATCCGCCAGGCTGTGATGACAGC...ACAGTGTCTCATGTGCACTCTACAAATTCCATGGCCCAGTGTAGGCCTCCTAGG
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000041382.7
CDS-3UTR TCA 90 bp ACCACAGACCTGAGAACACACCTTCACTCTTCCCTGGCCCCTGCTGTAGAATCAGGACATACACCATTGTaGGGGGCTGATCTCGAAGCT +
Preference number: 4 (lower is better)
Translates to: TTDLRTHLHSSLAPAVESGHTPL*GADLEA
Trigger: AGCTTCGAGATCAGCCCCTCACAATGGTGTATGTCC...TGATTCTACAGCAGGGGCCAGGGAAGAGTGAAGGTGTGTTCTCAGGTCTGTGGT
53% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000041382.7
ENSMUST00000212971.2
CDS-3UTR TCA 90 bp AGGCTTAGGTTATCAAAAGCTTGCTGTAGACTGTGGCAGAGAGTGGTTCACTACGGGAGCGCCCCACTTTaGTGCCAGGCATTAGGCCAC +
Preference number: 4 (lower is better)
Translates to: RLRLSKACCRLWQRVVHYGSAPL*CQALGH
Trigger: GTGGCCTAATGCCTGGCATCAAAGTGGGGCGCTCCC...GTAGTGAACCACTCTCTGCCACAGTCTACAGCAAGCTTTTGATAACCTAAGCCT
53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000041382.7
CDS-3UTR TCA 90 bp ACTGCCCACCATGAAGCACAGTACTGTTTGCAAACACTGCCTCTTCTGTCCAAGAGCCCTCAGGCACAGTaGTTTCCTCCACCTCCACCT +
Preference number: 4 (lower is better)
Translates to: TAHHEAQYCLQTLPLLSKSPQAQ*FPPPPP
Trigger: AGGTGGAGGTGGAGGAAATCACTGTGCCTGAGGGCT...CTTGGACAGAAGAGGCAGTGTTTGCAAACAGTACTGTGCTTCATGGTGGGCAGT
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000041382.7
CDS-3UTR GCA 90 bp CAAGTCTCAGCCACTGCCCACCATGAAGCACAGTACTGTTTGCAAACACTGCCTCGCACATGGTGTCCCTaGAGGATGACATCATGGAGC +
Preference number: 4 (lower is better)
Translates to: QVSATAHHEAQYCLQTLPRTWCP*RMTSWS
Trigger: GCTCCATGATGTCATCCTGCAGGGACACCATGTGCG...AGGCAGTGTTTGCAAACAGTACTGTGCTTCATGGTGGGCAGTGGCTGAGACTTG
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000041382.7
ENSMUST00000212971.2
CDS-3UTR GCA 90 bp TTCACTACCACAGACCTGAGAACACACCTTCACTCTTCCCTGGCCCCTGCTGTAGTTGAGATACATGCCTaGCCCCTGTCTTTCCCAGCT +
Preference number: 4 (lower is better)
Translates to: FTTTDLRTHLHSSLAPAVVEIHA*PLSFPA
Trigger: AGCTGGGAAAGACAGGGGGCAGGCATGTATCTCAAC...TACAGCAGGGGCCAGGGAAGAGTGAAGGTGTGTTCTCAGGTCTGTGGTAGTGAA
53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000041382.7
CDS-3UTR GCA 90 bp GAATTTATTCCAAGGATGCGGGTGTTGAGAACCCACTACCCCCAGGTTCCTTTGACACAAGGTTGCAGCTaGTCCCAGGACAGACGCCAG +
Preference number: 4 (lower is better)
Translates to: EFIPRMRVLRTHYPQVPLTQGCS*SQDRRQ
Trigger: CTGGCGTCTGTCCTGGGAGCAGCTGCAACCTTGTGT...CAAAGGAACCTGGGGGTAGTGGGTTCTCAACACCCGCATCCTTGGAATAAATTC
53% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000041382.7
CDS-3UTR CCA 90 bp TGCCTCTTCTGTCCAAGTCTTGCTTCCTTCCTTAGCAGCAGACTTGAAGAGGTAGACCCCGGAGACCAATaGTACCAGCCCATCAGGTCC +
Preference number: 4 (lower is better)
Translates to: CLFCPSLASFLSSRLEEVDPGDQ*YQPIRS
Trigger: GGACCTGATGGGCTGGTACCATTGGTCTCCGGGGTC...TACCTCTTCAAGTCTGCTGCTAAGGAAGGAAGCAAGACTTGGACAGAAGAGGCA
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000041382.7
ENSMUST00000212971.2
CDS-3UTR CCA 90 bp AAAGGCTTAGGTTATCAAAAGCTTGCTGTAGACTGTGGCAGAGAGTGGTTCACTCTCAGGGTTGGCAGCTaGCCCACTGCGCAAGCCTCC +
Preference number: 4 (lower is better)
Translates to: KGLGYQKLAVDCGREWFTLRVGS*PTAQAS
Trigger: GGAGGCTTGCGCAGTGGGCCAGCTGCCAACCCTGAG...AGTGAACCACTCTCTGCCACAGTCTACAGCAAGCTTTTGATAACCTAAGCCTTT
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000041382.7
CDS-3UTR CCA 90 bp TGCCTCTTCTGTCCAAGTCTTGCTTCCTTCCTTAGCAGCAGACTTGAAGAGGTAGAATCCACTCAGGGTTaGCAGCTGGCCCACTGCGCA +
Preference number: 4 (lower is better)
Translates to: CLFCPSLASFLSSRLEEVESTQG*QLAHCA
Trigger: TGCGCAGTGGGCCAGCTGCCAACCCTGAGTGGATTC...TACCTCTTCAAGTCTGCTGCTAAGGAAGGAAGCAAGACTTGGACAGAAGAGGCA
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000041382.7
CDS-3UTR CCA 90 bp TGCCTCTTCTGTCCAAGTCTTGCTTCCTTCCTTAGCAGCAGACTTGAAGAGGTACACTTCTCTCTCTCCTaGGCAAGCGCCTCCACACCC +
Preference number: 4 (lower is better)
Translates to: CLFCPSLASFLSSRLEEVHFSLS*ASASTP
Trigger: GGGTGTGGAGGCGCTTGCCCAGGAGAGAGAGAAGTG...TACCTCTTCAAGTCTGCTGCTAAGGAAGGAAGCAAGACTTGGACAGAAGAGGCA
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000041382.7
CDS-3UTR CCA 90 bp TGCCTCTTCTGTCCAAGTCTTGCTTCCTTCCTTAGCAGCAGACTTGAAGAGGTACAGCGGCTCGCAGCCTaGGGCCATAAGCTTCTTCTG +
Preference number: 4 (lower is better)
Translates to: CLFCPSLASFLSSRLEEVQRLAA*GHKLLL
Trigger: CAGAAGAAGCTTATGGCCCCAGGCTGCGAGCCGCTG...TACCTCTTCAAGTCTGCTGCTAAGGAAGGAAGCAAGACTTGGACAGAAGAGGCA
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000041382.7
CDS-3UTR TCA 90 bp ACCATGAAGCACAGTACTGTTTGCAAACACTGCCTCTTCTGTCCAAGTCTTGCTGGAAAAGGCGGGCAGTaGGGAGGCATCGATCTGAGG +
Preference number: 4 (lower is better)
Translates to: TMKHSTVCKHCLFCPSLAGKGGQ*GGIDLR
Trigger: CCTCAGATCGATGCCTCCTCACTGCCCGCCTTTTCC...AGCAAGACTTGGACAGAAGAGGCAGTGTTTGCAAACAGTACTGTGCTTCATGGT
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000041382.7
CDS-3UTR TCA 90 bp CACTACCACAGACCTGAGAACACACCTTCACTCTTCCCTGGCCCCTGCTGTAGATCCACACTCCAAGTATaGGAAAGGCTGAATCCACTC +
Preference number: 4 (lower is better)
Translates to: HYHRPENTPSLFPGPCCRSTLQV*ERLNPL
Trigger: GAGTGGATTCAGCCTTTCTCATACTTGGAGTGTGGA...TCTACAGCAGGGGCCAGGGAAGAGTGAAGGTGTGTTCTCAGGTCTGTGGTAGTG
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000041382.7
CDS-3UTR TCA 90 bp GAATTTATTCCAAGGATGCGGGTGTTGAGAACCCACTACCCCCAGGTTCCTTTGAAGCAGAGGGAGCTCTaGGTGGAGATGCACAATGCC +
Preference number: 4 (lower is better)
Translates to: EFIPRMRVLRTHYPQVPLKQREL*VEMHNA
Trigger: GGCATTGTGCATCTCCACTCAGAGCTCCCTCTGCTT...CAAAGGAACCTGGGGGTAGTGGGTTCTCAACACCCGCATCCTTGGAATAAATTC
52% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000041382.7
CDS-3UTR GCA 90 bp CTGCCCACCATGAAGCACAGTACTGTTTGCAAACACTGCCTCTTCTGTCCAAGTACAGAAGCATGTCGGTaGTGCAGACCCACACACCTG +
Preference number: 4 (lower is better)
Translates to: LPTMKHSTVCKHCLFCPSTEACR*CRPTHL
Trigger: CAGGTGTGTGGGTCTGCAGCACCGACATGCTTCTGT...ACTTGGACAGAAGAGGCAGTGTTTGCAAACAGTACTGTGCTTCATGGTGGGCAG
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000041382.7
ENSMUST00000212971.2
CDS-3UTR GCA 90 bp CCTAGGAGGCCTACACTGGGCCATGGAATTTGTAGAGTGCACATGAGACACTGTAAAAACAGAGACAGCTaGACAGGCTGGGCTCCAGAG +
Preference number: 4 (lower is better)
Translates to: PRRPTLGHGICRVHMRHCKNRDS*TGWAPE
Trigger: CTCTGGAGCCCAGCCTGTGCAGCTGTCTCTGTTTTT...ACAGTGTCTCATGTGCACTCTACAAATTCCATGGCCCAGTGTAGGCCTCCTAGG
52% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000041382.7
ENSMUST00000212971.2
CDS-3UTR GCA 90 bp GGCCAAGTCTCAGCCACTGCCCACCATGAAGCACAGTACTGTTTGCAAACACTGGGAGTGAACAATCTGTaGCACAGCTACTCCAGGCAT +
Preference number: 4 (lower is better)
Translates to: GQVSATAHHEAQYCLQTLGVNNL*HSYSRH
Trigger: ATGCCTGGAGTAGCTGTGGCACAGATTGTTCACTCC...CAGTGTTTGCAAACAGTACTGTGCTTCATGGTGGGCAGTGGCTGAGACTTGGCC
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000041382.7
ENSMUST00000212971.2
CDS-3UTR GCA 90 bp GAATTTATTCCAAGGATGCGGGTGTTGAGAACCCACTACCCCCAGGTTCCTTTGCGCACATGGTGTCCCTaGAGGATGACATCATGGAGC +
Preference number: 4 (lower is better)
Translates to: EFIPRMRVLRTHYPQVPLRTWCP*RMTSWS
Trigger: GCTCCATGATGTCATCCTGCAGGGACACCATGTGCG...CAAAGGAACCTGGGGGTAGTGGGTTCTCAACACCCGCATCCTTGGAATAAATTC
52% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000041382.7
ENSMUST00000212971.2
CDS-3UTR GCA 90 bp GGTTATCAAAAGCTTGCTGTAGACTGTGGCAGAGAGTGGTTCACTACCACAGACCGCGCCTCTAACACATaGCTTGCCTTCTGCAAGGCC +
Preference number: 4 (lower is better)
Translates to: GYQKLAVDCGREWFTTTDRASNT*LAFCKA
Trigger: GGCCTTGCAGAAGGCAAGGCATGTGTTAGAGGCGCG...GTCTGTGGTAGTGAACCACTCTCTGCCACAGTCTACAGCAAGCTTTTGATAACC
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000041382.7
CDS-3UTR GCA 90 bp GAGAACCCACTACCCCCAGGTTCCTTTGACACTGTAGTGTTGTTAGAAAGGCTTCACGCCAGGATCTTCTaGCCCAGCTGCAACCTTGTC +
Preference number: 4 (lower is better)
Translates to: ENPLPPGSFDTVVLLERLHARIF*PSCNLV
Trigger: GACAAGGTTGCAGCTGGGGCAGAAGATCCTGGCGTG...AAGCCTTTCTAACAACACTACAGTGTCAAAGGAACCTGGGGGTAGTGGGTTCTC
52% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000041382.7
CDS-3UTR GCA 90 bp TTGAAAATTAGAATTTATTCCAAGGATGCGGGTGTTGAGAACCCACTACCCCCAGCCTCCTCGGCCCTCTaGCATGCAGCCCAGCACATC +
Preference number: 4 (lower is better)
Translates to: LKIRIYSKDAGVENPLPPASSAL*HAAQHI
Trigger: GATGTGCTGGGCTGCATGGCAGAGGGCCGAGGAGGC...TGGGGGTAGTGGGTTCTCAACACCCGCATCCTTGGAATAAATTCTAATTTTCAA
52% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000041382.7
CDS-3UTR GCA 90 bp AGGCTTAGGTTATCAAAAGCTTGCTGTAGACTGTGGCAGAGAGTGGTTCACTACTGGGTGGAGACGAAGTaGCGGGCTGTCATCACAGCC +
Preference number: 4 (lower is better)
Translates to: RLRLSKACCRLWQRVVHYWVETK*RAVITA
Trigger: GGCTGTGATGACAGCCCGGCACTTCGTCTCCACCCA...GTAGTGAACCACTCTCTGCCACAGTCTACAGCAAGCTTTTGATAACCTAAGCCT
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000041382.7
CDS-3UTR GCA 90 bp TCCAAGGATGCGGGTGTTGAGAACCCACTACCCCCAGGTTCCTTTGACACTGTAAGCTCTGACCACGTGTaGAGCTCAAAGCCACCATTA +
Preference number: 4 (lower is better)
Translates to: SKDAGVENPLPPGSFDTVSSDHV*SSKPPL
Trigger: TAATGGTGGCTTTGAGCTGCACACGTGGTCAGAGCT...TACAGTGTCAAAGGAACCTGGGGGTAGTGGGTTCTCAACACCCGCATCCTTGGA
52% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000041382.7
CDS-3UTR GCA 90 bp AAAGGCTTAGGTTATCAAAAGCTTGCTGTAGACTGTGGCAGAGAGTGGTTCACTCCAAGACCAGAGCCGTaGGGCAGCTCTGACCACGTG +
Preference number: 4 (lower is better)
Translates to: KGLGYQKLAVDCGREWFTPRPEP*GSSDHV
Trigger: CACGTGGTCAGAGCTGCCGCACGGCTCTGGTCTTGG...AGTGAACCACTCTCTGCCACAGTCTACAGCAAGCTTTTGATAACCTAAGCCTTT
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000041382.7
CDS-3UTR GCA 90 bp GAGAACCCACTACCCCCAGGTTCCTTTGACACTGTAGTGTTGTTAGAAAGGCTTAGCACCTGCTCCAGGTaGAGCACTGCGTGGATGAGA +
Preference number: 4 (lower is better)
Translates to: ENPLPPGSFDTVVLLERLSTCSR*STAWMR
Trigger: TCTCATCCACGCAGTGCTGCACCTGGAGCAGGTGCT...AAGCCTTTCTAACAACACTACAGTGTCAAAGGAACCTGGGGGTAGTGGGTTCTC
52% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000041382.7
CDS-3UTR GCA 90 bp CAAAAGCTTGCTGTAGACTGTGGCAGAGAGTGGTTCACTACCACAGACCTGAGATTCCTCAGCACGTCCTaGAGCAGATTCCGGGCCAAT +
Preference number: 4 (lower is better)
Translates to: QKLAVDCGREWFTTTDLRFLSTS*SRFRAN
Trigger: ATTGGCCCGGAATCTGCTGCAGGACGTGCTGAGGAA...TCTCAGGTCTGTGGTAGTGAACCACTCTCTGCCACAGTCTACAGCAAGCTTTTG
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000041382.7
CDS-3UTR CCA 90 bp AAAGGCTTAGGTTATCAAAAGCTTGCTGTAGACTGTGGCAGAGAGTGGTTCACTGCAGACCCACACACCTaGTGGGGAACCTGGACCCAG +
Preference number: 4 (lower is better)
Translates to: KGLGYQKLAVDCGREWFTADPHT*WGTWTQ
Trigger: CTGGGTCCAGGTTCCCCACCAGGTGTGTGGGTCTGC...AGTGAACCACTCTCTGCCACAGTCTACAGCAAGCTTTTGATAACCTAAGCCTTT
52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000041382.7
ENSMUST00000212971.2
CDS-3UTR CCA 90 bp GAGAACCCACTACCCCCAGGTTCCTTTGACACTGTAGTGTTGTTAGAAAGGCTTTGCAGTGCCTCCGAGTaGGCTGTATCCAGACCACTC +
Preference number: 4 (lower is better)
Translates to: ENPLPPGSFDTVVLLERLCSASE*AVSRPL
Trigger: GAGTGGTCTGGATACAGCCCACTCGGAGGCACTGCA...AAGCCTTTCTAACAACACTACAGTGTCAAAGGAACCTGGGGGTAGTGGGTTCTC
52% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000041382.7
ENSMUST00000212971.2
CDS-3UTR CCA 90 bp CCTAGGAGGCCTACACTGGGCCATGGAATTTGTAGAGTGCACATGAGACACTGTTGCAGGATGACATCATaGAGCTCCAGGCCATGCAGT +
Preference number: 4 (lower is better)
Translates to: PRRPTLGHGICRVHMRHCCRMTS*SSRPCS
Trigger: ACTGCATGGCCTGGAGCTCCATGATGTCATCCTGCA...ACAGTGTCTCATGTGCACTCTACAAATTCCATGGCCCAGTGTAGGCCTCCTAGG
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000041382.7
ENSMUST00000212971.2
CDS-3UTR CCA 90 bp GAATTTATTCCAAGGATGCGGGTGTTGAGAACCCACTACCCCCAGGTTCCTTTGATTAGGCCACTGACTTaGTCCTGCCAGCCACCTCCT +
Preference number: 4 (lower is better)
Translates to: EFIPRMRVLRTHYPQVPLIRPLT*SCQPPP
Trigger: AGGAGGTGGCTGGCAGGACCAAGTCAGTGGCCTAAT...CAAAGGAACCTGGGGGTAGTGGGTTCTCAACACCCGCATCCTTGGAATAAATTC
52% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000041382.7
CDS-3UTR TCA 90 bp CAAAAGCTTGCTGTAGACTGTGGCAGAGAGTGGTTCACTACCACAGACCTGAGAGGACATACACCATTGTaGGGGGCTGATCTCGAAGCT +
Preference number: 4 (lower is better)
Translates to: QKLAVDCGREWFTTTDLRGHTPL*GADLEA
Trigger: AGCTTCGAGATCAGCCCCTCACAATGGTGTATGTCC...TCTCAGGTCTGTGGTAGTGAACCACTCTCTGCCACAGTCTACAGCAAGCTTTTG
51% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000041382.7
ENSMUST00000212971.2
CDS-3UTR TCA 90 bp GGTTATCAAAAGCTTGCTGTAGACTGTGGCAGAGAGTGGTTCACTACCACAGACTCCTCCACCTGGGAGTaGACAATCTGTGCCACAGCT +
Preference number: 4 (lower is better)
Translates to: GYQKLAVDCGREWFTTTDSSTWE*TICATA
Trigger: AGCTGTGGCACAGATTGTTCACTCCCAGGTGGAGGA...GTCTGTGGTAGTGAACCACTCTCTGCCACAGTCTACAGCAAGCTTTTGATAACC
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000041382.7
ENSMUST00000212971.2
CDS-3UTR GCA 90 bp AGGCTTAGGTTATCAAAAGCTTGCTGTAGACTGTGGCAGAGAGTGGTTCACTACAGGATCCAGGCAGAGTaGAGGACATCGGACGTGACC +
Preference number: 4 (lower is better)
Translates to: RLRLSKACCRLWQRVVHYRIQAE*RTSDVT
Trigger: GGTCACGTCCGATGTCCTGCACTCTGCCTGGATCCT...GTAGTGAACCACTCTCTGCCACAGTCTACAGCAAGCTTTTGATAACCTAAGCCT
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000041382.7
ENSMUST00000212971.2
CDS-3UTR GCA 90 bp AGGCTTAGGTTATCAAAAGCTTGCTGTAGACTGTGGCAGAGAGTGGTTCACTACGAAGCATGTCGGTGCTaGAGACCCACACACCTGGTG +
Preference number: 4 (lower is better)
Translates to: RLRLSKACCRLWQRVVHYEACRC*RPTHLV
Trigger: CACCAGGTGTGTGGGTCTGCAGCACCGACATGCTTC...GTAGTGAACCACTCTCTGCCACAGTCTACAGCAAGCTTTTGATAACCTAAGCCT
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000041382.7
ENSMUST00000212971.2
CDS-3UTR GCA 90 bp AGGCTTAGGTTATCAAAAGCTTGCTGTAGACTGTGGCAGAGAGTGGTTCACTACTGGGTGGCTAGGAGGTaGTCAGCAGTCTCCACAGAG +
Preference number: 4 (lower is better)
Translates to: RLRLSKACCRLWQRVVHYWVARR*SAVSTE
Trigger: CTCTGTGGAGACTGCTGAGCACCTCCTAGCCACCCA...GTAGTGAACCACTCTCTGCCACAGTCTACAGCAAGCTTTTGATAACCTAAGCCT
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000041382.7
ENSMUST00000212971.2
CDS-3UTR GCA 90 bp TGCCTCTTCTGTCCAAGTCTTGCTTCCTTCCTTAGCAGCAGACTTGAAGAGGTAGGCATCGTGAGTCTGTaGAGGAACTCGGTGGCATCA +
Preference number: 4 (lower is better)
Translates to: CLFCPSLASFLSSRLEEVGIVSL*RNSVAS
Trigger: TGATGCCACCGAGTTCCTGCACAGACTCACGATGCC...TACCTCTTCAAGTCTGCTGCTAAGGAAGGAAGCAAGACTTGGACAGAAGAGGCA
51% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000041382.7
ENSMUST00000212971.2
CDS-3UTR GCA 90 bp TTGAAAATTAGAATTTATTCCAAGGATGCGGGTGTTGAGAACCCACTACCCCCATGGAGCTCCAGGCCATaGAGTGCCTCCGAGTGGGCT +
Preference number: 4 (lower is better)
Translates to: LKIRIYSKDAGVENPLPPWSSRP*SASEWA
Trigger: AGCCCACTCGGAGGCACTGCATGGCCTGGAGCTCCA...TGGGGGTAGTGGGTTCTCAACACCCGCATCCTTGGAATAAATTCTAATTTTCAA
51% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000041382.7
ENSMUST00000212971.2
CDS-3UTR GCA 90 bp ACTGCCCACCATGAAGCACAGTACTGTTTGCAAACACTGCCTCTTCTGTCCAAGACATGCCTTGCCTTCTaGAAGGCCTGGCAGAAGAAC +
Preference number: 4 (lower is better)
Translates to: TAHHEAQYCLQTLPLLSKTCLAF*KAWQKN
Trigger: GTTCTTCTGCCAGGCCTTGCAGAAGGCAAGGCATGT...CTTGGACAGAAGAGGCAGTGTTTGCAAACAGTACTGTGCTTCATGGTGGGCAGT
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000041382.7
CDS-3UTR CCA 90 bp TTGAAAATTAGAATTTATTCCAAGGATGCGGGTGTTGAGAACCCACTACCCCCAACCTGGTGGGGAACCTaGACCCAGCCGGTGGGTCAT +
Preference number: 4 (lower is better)
Translates to: LKIRIYSKDAGVENPLPPTWWGT*TQPVGH
Trigger: ATGACCCACCGGCTGGGTCCAGGTTCCCCACCAGGT...TGGGGGTAGTGGGTTCTCAACACCCGCATCCTTGGAATAAATTCTAATTTTCAA
51% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 2 transcripts:
ENSMUST00000041382.7
ENSMUST00000212971.2
3UTR CAA 72 bp GTCTCAGCCACTGCCCACCATGAAGCACAGTACTGTTaGCAAACACTGCCTCTTCTGTCCAAGTCTTGCTTC +
Preference number: 4 (lower is better)
Translates to: VSATAHHEAQYC*QTLPLLSKSCF
Trigger: GAAGCAAGACTTGGACAGAAGAGGCAGTGTTTGCAAACAGTACTGTGCTTCATGGTGGGCAGTGGCTGAGAC
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000041382.7
ENSMUST00000212971.2
3UTR CAA 72 bp ATGCCTGTCTTCTTGAAGAACTCATTCCAGGACATGTaGAGATACATGCCTGCCCCCTGTCTCTGGGGGAAG +
Preference number: 4 (lower is better)
Translates to: MPVFLKNSFQDM*RYMPAPCLWGK
Trigger: CTTCCCCCAGAGACAGGGGGCAGGCATGTATCTCAACATGTCCTGGAATGAGTTCTTCAAGAAGACAGGCAT
51% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 1 transcripts:
ENSMUST00000212971.2
CDS-3UTR TCA 90 bp TTGAAAATTAGAATTTATTCCAAGGATGCGGGTGTTGAGAACCCACTACCCCCAATGGGGCCCCTCAGGTaGCAGTGCTGCAGGACACTT +
Preference number: 4 (lower is better)
Translates to: LKIRIYSKDAGVENPLPPMGPLR*QCCRTL
Trigger: AAGTGTCCTGCAGCACTGTCACCTGAGGGGCCCCAT...TGGGGGTAGTGGGTTCTCAACACCCGCATCCTTGGAATAAATTCTAATTTTCAA
50% GC, longest homopolymer 5 nt, total homopolymer stretches 17 nt.
Matches the following 2 transcripts:
ENSMUST00000041382.7
ENSMUST00000212971.2
CDS-3UTR TCA 90 bp CAAGTCTCAGCCACTGCCCACCATGAAGCACAGTACTGTTTGCAAACACTGCCTAAGTATGAGAAAGGCTaGATCCACTCAGGGTTGGCA +
Preference number: 4 (lower is better)
Translates to: QVSATAHHEAQYCLQTLPKYEKG*IHSGLA
Trigger: TGCCAACCCTGAGTGGATTCAGCCTTTCTCATACTT...AGGCAGTGTTTGCAAACAGTACTGTGCTTCATGGTGGGCAGTGGCTGAGACTTG
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000041382.7
CDS-3UTR GCA 90 bp ACCATGAAGCACAGTACTGTTTGCAAACACTGCCTCTTCTGTCCAAGTCTTGCTACAGAAGCATGTCGGTaGTGCAGACCCACACACCTG +
Preference number: 4 (lower is better)
Translates to: TMKHSTVCKHCLFCPSLATEACR*CRPTHL
Trigger: CAGGTGTGTGGGTCTGCAGCACCGACATGCTTCTGT...AGCAAGACTTGGACAGAAGAGGCAGTGTTTGCAAACAGTACTGTGCTTCATGGT
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000041382.7
ENSMUST00000212971.2
CDS-3UTR GCA 90 bp TGCCTCTTCTGTCCAAGTCTTGCTTCCTTCCTTAGCAGCAGACTTGAAGAGGTAAAAAACAGAGACAGCTaGACAGGCTGGGCTCCAGAG +
Preference number: 4 (lower is better)
Translates to: CLFCPSLASFLSSRLEEVKNRDS*TGWAPE
Trigger: CTCTGGAGCCCAGCCTGTGCAGCTGTCTCTGTTTTT...TACCTCTTCAAGTCTGCTGCTAAGGAAGGAAGCAAGACTTGGACAGAAGAGGCA
50% GC, longest homopolymer 6 nt, total homopolymer stretches 6 nt.
Matches the following 2 transcripts:
ENSMUST00000041382.7
ENSMUST00000212971.2
CDS-3UTR CCA 90 bp CACTACCACAGACCTGAGAACACACCTTCACTCTTCCCTGGCCCCTGCTGTAGAACACTGTCCTTGTACTaGCATGTCAGGATAATGACA +
Preference number: 4 (lower is better)
Translates to: HYHRPENTPSLFPGPCCRTLSLY*HVRIMT
Trigger: TGTCATTATCCTGACATGCCAGTACAAGGACAGTGT...TCTACAGCAGGGGCCAGGGAAGAGTGAAGGTGTGTTCTCAGGTCTGTGGTAGTG
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000041382.7
ENSMUST00000212971.2
CDS-3UTR CCA 90 bp TATTCCAAGGATGCGGGTGTTGAGAACCCACTACCCCCAGGTTCCTTTGACACTACTGATCCCAGGGTTTaGAGGAACAGACAGAAGCAT +
Preference number: 4 (lower is better)
Translates to: YSKDAGVENPLPPGSFDTTDPRV*RNRQKH
Trigger: ATGCTTCTGTCTGTTCCTCCAAACCCTGGGATCAGT...AGTGTCAAAGGAACCTGGGGGTAGTGGGTTCTCAACACCCGCATCCTTGGAATA
50% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000041382.7
ENSMUST00000212971.2
CDS-3UTR CCA 90 bp GGTTATCAAAAGCTTGCTGTAGACTGTGGCAGAGAGTGGTTCACTACCACAGACTGCAGGATGACATCATaGAGCTCCAGGCCATGCAGT +
Preference number: 4 (lower is better)
Translates to: GYQKLAVDCGREWFTTTDCRMTS*SSRPCS
Trigger: ACTGCATGGCCTGGAGCTCCATGATGTCATCCTGCA...GTCTGTGGTAGTGAACCACTCTCTGCCACAGTCTACAGCAAGCTTTTGATAACC
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000041382.7
ENSMUST00000212971.2
CDS-3UTR TCA 90 bp GAGAACCCACTACCCCCAGGTTCCTTTGACACTGTAGTGTTGTTAGAAAGGCTTGGAGCAGATGGTCATTaGTCTTCTGGACAAAGCCCT +
Preference number: 4 (lower is better)
Translates to: ENPLPPGSFDTVVLLERLGADGH*SSGQSP
Trigger: AGGGCTTTGTCCAGAAGATCAATGACCATCTGCTCC...AAGCCTTTCTAACAACACTACAGTGTCAAAGGAACCTGGGGGTAGTGGGTTCTC
49% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000041382.7
CDS-3UTR CCA 90 bp CAGATTCCGGGCCAATCGGGTCTTGCCGGTATAAACCAGGAGCAGATGGTCATTACACTGTCCTTGTACTaGCATGTCAGGATAATGACA +
Preference number: 4 (lower is better)
Translates to: QIPGQSGLAGINQEQMVITLSLY*HVRIMT
Trigger: TGTCATTATCCTGACATGCCAGTACAAGGACAGTGT...AATGACCATCTGCTCCTGGTTTATACCGGCAAGACCCGATTGGCCCGGAATCTG
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000212971.2
CDS-3UTR CCA 90 bp CTGCCCACCATGAAGCACAGTACTGTTTGCAAACACTGCCTCTTCTGTCCAAGTACTGATCCCAGGGTTTaGAGGAACAGACAGAAGCAT +
Preference number: 4 (lower is better)
Translates to: LPTMKHSTVCKHCLFCPSTDPRV*RNRQKH
Trigger: ATGCTTCTGTCTGTTCCTCCAAACCCTGGGATCAGT...ACTTGGACAGAAGAGGCAGTGTTTGCAAACAGTACTGTGCTTCATGGTGGGCAG
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000041382.7
ENSMUST00000212971.2
CDS-3UTR CCA 90 bp TTGAAAATTAGAATTTATTCCAAGGATGCGGGTGTTGAGAACCCACTACCCCCAGAAATCCACACGGGCTaGGCACTCAGTCACCACCCA +
Preference number: 4 (lower is better)
Translates to: LKIRIYSKDAGVENPLPPEIHTG*ALSHHP
Trigger: TGGGTGGTGACTGAGTGCCCAGCCCGTGTGGATTTC...TGGGGGTAGTGGGTTCTCAACACCCGCATCCTTGGAATAAATTCTAATTTTCAA
49% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000041382.7
CDS-3UTR CCA 90 bp AAAGGCTTAGGTTATCAAAAGCTTGCTGTAGACTGTGGCAGAGAGTGGTTCACTGGCACACTATCCTCATaGTCATCTCATCCTGCCGAG +
Preference number: 4 (lower is better)
Translates to: KGLGYQKLAVDCGREWFTGTLSS*SSHPAE
Trigger: CTCGGCAGGATGAGATGACCATGAGGATAGTGTGCC...AGTGAACCACTCTCTGCCACAGTCTACAGCAAGCTTTTGATAACCTAAGCCTTT
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000041382.7
CDS-3UTR CCA 90 bp AAAGGCTTAGGTTATCAAAAGCTTGCTGTAGACTGTGGCAGAGAGTGGTTCACTAGAGGGAGCTCTGAGTaGAGATGCACAATGCCAGCA +
Preference number: 4 (lower is better)
Translates to: KGLGYQKLAVDCGREWFTRGSSE*RCTMPA
Trigger: TGCTGGCATTGTGCATCTCCACTCAGAGCTCCCTCT...AGTGAACCACTCTCTGCCACAGTCTACAGCAAGCTTTTGATAACCTAAGCCTTT
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000041382.7
CDS-3UTR CCA 90 bp GGTTATCAAAAGCTTGCTGTAGACTGTGGCAGAGAGTGGTTCACTACCACAGACTCTGCCGGGGTTCCTTaGTCAATAGATAGAGAAAGC +
Preference number: 4 (lower is better)
Translates to: GYQKLAVDCGREWFTTTDSAGVP*SIDRES
Trigger: GCTTTCTCTATCTATTGACCAAGGAACCCCGGCAGA...GTCTGTGGTAGTGAACCACTCTCTGCCACAGTCTACAGCAAGCTTTTGATAACC
48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000041382.7
CDS-3UTR GCA 90 bp TTGAAAATTAGAATTTATTCCAAGGATGCGGGTGTTGAGAACCCACTACCCCCAAGCTCTGAGTGGAGATaGACAATGCCAGCACAGATA +
Preference number: 4 (lower is better)
Translates to: LKIRIYSKDAGVENPLPPSSEWR*TMPAQI
Trigger: TATCTGTGCTGGCATTGTGCATCTCCACTCAGAGCT...TGGGGGTAGTGGGTTCTCAACACCCGCATCCTTGGAATAAATTCTAATTTTCAA
44% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000041382.7
3UTR CAA 72 bp AACCCACTACCCCCAGGTTCCTTTGACACTGTAGTGTaGTTAGAAAGGCTTAGGTTATCAAAAGCTTGCTGT +
Preference number: 4 (lower is better)
Translates to: NPLPPGSFDTVV*LERLRLSKACC
Trigger: ACAGCAAGCTTTTGATAACCTAAGCCTTTCTAACAACACTACAGTGTCAAAGGAACCTGGGGGTAGTGGGTT
44% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000041382.7
ENSMUST00000212971.2
CDS TCA 90 bp AGCCAGCTCGGGCACTCAAGTGTTCAGCAGCCACCAGCAGTGCGTTaGGGGTGGCTCCTCCGCTGCCGACTCGAGTCTGGGGATCCTCCA +
Preference number: 5 (lower is better)
Translates to: SQLGHSSVQQPPAVR*GWLLRCRLESGDPP
Trigger: TGGAGGATCCCCAGACTCGAGTCGGCAGCGGAGGAGCCACCCTCAACGCACTGCTGGTGGCTGCTGAACACTTGAGTGCCCGAGCTGGCT
64% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000041382.7
ENSMUST00000212971.2
CDS TCA 90 bp CACGGCTCAGGGAGCCATGCAGCCGCACATGGTGTCCCTGCAGGATaGCATCATGGAGCTCCAGGCCATGCAGTGCCTCCGAGTGGGCTG +
Preference number: 5 (lower is better)
Translates to: HGSGSHAAAHGVPAG*HHGAPGHAVPPSGL
Trigger: CAGCCCACTCGGAGGCACTGCATGGCCTGGAGCTCCATGATGTCATCCTGCAGGGACACCATGTGCGGCTGCATGGCTCCCTGAGCCGTG
64% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000041382.7
ENSMUST00000212971.2
CDS CCA 90 bp ACCAGCAGTGCGTTGAGGGTGGCTCCTCCGCTGCCGACTCGAGTCTaGGGATCCTCCACAGCCAGTAACATCGTCCCCGCAGGAATCTGC +
Preference number: 5 (lower is better)
Translates to: TSSALRVAPPLPTRV*GSSTASNIVPAGIC
Trigger: GCAGATTCCTGCGGGGACGATGTTACTGGCTGTGGAGGATCCCCAGACTCGAGTCGGCAGCGGAGGAGCCACCCTCAACGCACTGCTGGT
63% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000041382.7
ENSMUST00000212971.2
CDS TCA 90 bp CAGTCGTCATGTAGCTGTAGCCGCCGTCAGGGACATACACCATTGTaGGGGGCTGATCTCGAAGCTCCCTCCACAGCTGGGCCCGGGCTC +
Preference number: 5 (lower is better)
Translates to: QSSCSCSRRQGHTPL*GADLEAPSTAGPGL
Trigger: GAGCCCGGGCCCAGCTGTGGAGGGAGCTTCGAGATCAGCCCCTCACAATGGTGTATGTCCCTGACGGCGGCTACAGCTACATGACGACTG
62% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000041382.7
ENSMUST00000212971.2
CDS GCA 90 bp GAGACAGCTGCACAGGCTGGGCTCCAGAGTCCAAGCCCATATAGGTaGAGGCATCCAGCGGTGGGCTCACATGGGTGGCTAGGAGGTGCT +
Preference number: 5 (lower is better)
Translates to: ETAAQAGLQSPSPYR*RHPAVGSHGWLGGA
Trigger: AGCACCTCCTAGCCACCCATGTGAGCCCACCGCTGGATGCCTGCACCTATATGGGCTTGGACTCTGGAGCCCAGCCTGTGCAGCTGTCTC
62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000041382.7
ENSMUST00000212971.2
CDS GCA 90 bp CCGAGTGGGCTGTATCCAGACCACTCACAAAGCAGCCAGCGCCGATaGGAATGGGGCCCCTCAGGTGACAGTGCTGCAGGACACTTCGAG +
Preference number: 5 (lower is better)
Translates to: PSGLYPDHSQSSQRR*EWGPSGDSAAGHFE
Trigger: CTCGAAGTGTCCTGCAGCACTGTCACCTGAGGGGCCCCATTCGCATCGGCGCTGGCTGCTTTGTGAGTGGTCTGGATACAGCCCACTCGG
62% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000041382.7
ENSMUST00000212971.2
CDS-3UTR CAA 90 bp AGAGGCCAAGTCTCAGCCACTGCCCACCATGAAGCACAGTACTGTTTGCAAACAGGGATGCGGCGTGCTTaGGCCCCGATGGGCCGGCGG +
Preference number: 5 (lower is better)
Translates to: RGQVSATAHHEAQYCLQTGMRRA*APMGRR
Trigger: CCGCCGGCCCATCGGGGCCAAAGCACGCCGCATCCC...TGTTTGCAAACAGTACTGTGCTTCATGGTGGGCAGTGGCTGAGACTTGGCCTCT
62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000041382.7
CDS TCA 90 bp AGACCCACACACCTGGTGGGGAACCTGGACCCAGCCGGTGGGTCATaGTATCCAACAGGCAGTCCAGGTTGCATACCAAGGCCTCCACAG +
Preference number: 5 (lower is better)
Translates to: RPTHLVGNLDPAGGS*YPTGSPGCIPRPPQ
Trigger: CTGTGGAGGCCTTGGTATGCAACCTGGACTGCCTGTTGGATATCATGACCCACCGGCTGGGTCCAGGTTCCCCACCAGGTGTGTGGGTCT
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000041382.7
ENSMUST00000212971.2
CDS GCA 90 bp GGGGCCGCCCAGCCAGGAAGTTCTCCCTGCTCATATTCCGAGCCATaGAGAGCAGGATGTCGAAAAACAGAGACAGCTGCACAGGCTGGG +
Preference number: 5 (lower is better)
Translates to: GAAQPGSSPCSYSEP*RAGCRKTETAAQAG
Trigger: CCCAGCCTGTGCAGCTGTCTCTGTTTTTCGACATCCTGCTCTGCATGGCTCGGAATATGAGCAGGGAGAACTTCCTGGCTGGGCGGCCCC
60% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000041382.7
ENSMUST00000212971.2
CDS CCA 90 bp TGCAGGATGACATCATGGAGCTCCAGGCCATGCAGTGCCTCCGAGTaGGCTGTATCCAGACCACTCACAAAGCAGCCAGCGCCGATGCGA +
Preference number: 5 (lower is better)
Translates to: CRMTSWSSRPCSASE*AVSRPLTKQPAPMR
Trigger: TCGCATCGGCGCTGGCTGCTTTGTGAGTGGTCTGGATACAGCCCACTCGGAGGCACTGCATGGCCTGGAGCTCCATGATGTCATCCTGCA
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000041382.7
ENSMUST00000212971.2
CDS TCA 90 bp ACCGAGCACGTAGCCTCTAGCAGCTGTGGCTCCTCCACCTGGGAGTaGACAATCTGTGCCACAGCTACTCCAGGCATCGTGAGTCTGTGC +
Preference number: 5 (lower is better)
Translates to: TEHVASSSCGSSTWE*TICATATPGIVSLC
Trigger: GCACAGACTCACGATGCCTGGAGTAGCTGTGGCACAGATTGTTCACTCCCAGGTGGAGGAGCCACAGCTGCTAGAGGCTACGTGCTCGGT
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000041382.7
ENSMUST00000212971.2
CDS GCA 90 bp ATGGTGTCCCTGCAGGATGACATCATGGAGCTCCAGGCCATGCAGTaGCTCCGAGTGGGCTGTATCCAGACCACTCACAAAGCAGCCAGC +
Preference number: 5 (lower is better)
Translates to: MVSLQDDIMELQAMQ*LRVGCIQTTHKAAS
Trigger: GCTGGCTGCTTTGTGAGTGGTCTGGATACAGCCCACTCGGAGGCACTGCATGGCCTGGAGCTCCATGATGTCATCCTGCAGGGACACCAT
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000041382.7
ENSMUST00000212971.2
CDS GCA 90 bp CTGTCCAGACGGCCAGCAAGAGTAAATACACGGCTCAGGGAGCCATaGAGCCGCACATGGTGTCCCTGCAGGATGACATCATGGAGCTCC +
Preference number: 5 (lower is better)
Translates to: LSRRPARVNTRLREP*SRTWCPCRMTSWSS
Trigger: GGAGCTCCATGATGTCATCCTGCAGGGACACCATGTGCGGCTGCATGGCTCCCTGAGCCGTGTATTTACTCTTGCTGGCCGTCTGGACAG
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000041382.7
ENSMUST00000212971.2
CDS CCA 90 bp AGGAACAGACAGAAGCATGTCGGTGCTGCAGACCCACACACCTGGTaGGGAACCTGGACCCAGCCGGTGGGTCATGATATCCAACAGGCA +
Preference number: 5 (lower is better)
Translates to: RNRQKHVGAADPHTW*GTWTQPVGHDIQQA
Trigger: TGCCTGTTGGATATCATGACCCACCGGCTGGGTCCAGGTTCCCCACCAGGTGTGTGGGTCTGCAGCACCGACATGCTTCTGTCTGTTCCT
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000041382.7
ENSMUST00000212971.2
CDS CCA 90 bp TGGAGGAACAGACAGAAGCATGTCGGTGCTGCAGACCCACACACCTaGTGGGGAACCTGGACCCAGCCGGTGGGTCATGATATCCAACAG +
Preference number: 5 (lower is better)
Translates to: WRNRQKHVGAADPHT*WGTWTQPVGHDIQQ
Trigger: CTGTTGGATATCATGACCCACCGGCTGGGTCCAGGTTCCCCACCAGGTGTGTGGGTCTGCAGCACCGACATGCTTCTGTCTGTTCCTCCA
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000041382.7
ENSMUST00000212971.2
CDS CCA 90 bp CCAGCAAGAGTAAATACACGGCTCAGGGAGCCATGCAGCCGCACATaGTGTCCCTGCAGGATGACATCATGGAGCTCCAGGCCATGCAGT +
Preference number: 5 (lower is better)
Translates to: PARVNTRLREPCSRT*CPCRMTSWSSRPCS
Trigger: ACTGCATGGCCTGGAGCTCCATGATGTCATCCTGCAGGGACACCATGTGCGGCTGCATGGCTCCCTGAGCCGTGTATTTACTCTTGCTGG
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000041382.7
ENSMUST00000212971.2
CDS-3UTR CAA 90 bp TTCACTACCACAGACCTGAGAACACACCTTCACTCTTCCCTGGCCCCTGCTGTACGGGAGCGCCCCACTTaGATGCCAGGCATTAGGCCA +
Preference number: 5 (lower is better)
Translates to: FTTTDLRTHLHSSLAPAVRERPT*MPGIRP
Trigger: TGGCCTAATGCCTGGCATCAAAGTGGGGCGCTCCCG...TACAGCAGGGGCCAGGGAAGAGTGAAGGTGTGTTCTCAGGTCTGTGGTAGTGAA
58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000041382.7
CDS-3UTR CAA 90 bp GGCCAAGTCTCAGCCACTGCCCACCATGAAGCACAGTACTGTTTGCAAACACTGCCAAGGCCCTCAGCCTaGGCCAGGACAGCTTCCAGA +
Preference number: 5 (lower is better)
Translates to: GQVSATAHHEAQYCLQTLPRPSA*ARTASR
Trigger: TCTGGAAGCTGTCCTGGCCAAGGCTGAGGGCCTTGG...CAGTGTTTGCAAACAGTACTGTGCTTCATGGTGGGCAGTGGCTGAGACTTGGCC
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000041382.7
CDS CCA 90 bp GTGCTCAGCAGTCTCCACAGAGAAGAAGACGACCCCGGAGACCAATaGTACCAGCCCATCAGGTCCGACACAACGTTGTATCTCCGCCTT +
Preference number: 5 (lower is better)
Translates to: VLSSLHREEDDPGDQ*YQPIRSDTTLYLRL
Trigger: AAGGCGGAGATACAACGTTGTGTCGGACCTGATGGGCTGGTACCATTGGTCTCCGGGGTCGTCTTCTTCTCTGTGGAGACTGCTGAGCAC
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000041382.7
ENSMUST00000212971.2
CDS-3UTR CAA 90 bp GTGGTTCACTACCACAGACCTGAGAACACACCTTCACTCTTCCCTGGCCCCTGCAACAGGCAGTCCAGGTaGCATACCAAGGCCTCCACA +
Preference number: 5 (lower is better)
Translates to: VVHYHRPENTPSLFPGPCNRQSR*HTKAST
Trigger: TGTGGAGGCCTTGGTATGCAACCTGGACTGCCTGTT...GCAGGGGCCAGGGAAGAGTGAAGGTGTGTTCTCAGGTCTGTGGTAGTGAACCAC
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000041382.7
ENSMUST00000212971.2
CDS TCA 90 bp CCACCTGGGAGTGAACAATCTGTGCCACAGCTACTCCAGGCATCGTaGGTCTGTGCAGGAACTCGGTGGCATCAGTCGTCATGTAGCTGT +
Preference number: 5 (lower is better)
Translates to: PPGSEQSVPQLLQAS*VCAGTRWHQSSCSC
Trigger: ACAGCTACATGACGACTGATGCCACCGAGTTCCTGCACAGACTCACGATGCCTGGAGTAGCTGTGGCACAGATTGTTCACTCCCAGGTGG
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000041382.7
ENSMUST00000212971.2
CDS-3UTR CAA 90 bp CAGCCTTGGCCAGGACAGCTTCCAGAGTCTCTTTCTGCCGGGGTTCCTTGGTCAACCTGGACACTGTCCTaGTACTGGCATGTCAGGATA +
Preference number: 5 (lower is better)
Translates to: QPWPGQLPESLSAGVPWSTWTLS*YWHVRI
Trigger: TATCCTGACATGCCAGTACAAGGACAGTGTCCAGGT...TGACCAAGGAACCCCGGCAGAAAGAGACTCTGGAAGCTGTCCTGGCCAAGGCTG
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000212971.2
CDS-3UTR CAA 90 bp CAAAAGCTTGCTGTAGACTGTGGCAGAGAGTGGTTCACTACCACAGACCTGAGAGCCCCAGCTGCAACCTaGTCAAGTGTGGCCAGCAGG +
Preference number: 5 (lower is better)
Translates to: QKLAVDCGREWFTTTDLRAPAAT*SSVASR
Trigger: CCTGCTGGCCACACTTGACAAGGTTGCAGCTGGGGC...TCTCAGGTCTGTGGTAGTGAACCACTCTCTGCCACAGTCTACAGCAAGCTTTTG
56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000041382.7
CDS TCA 90 bp CTCCGCCTTAGTGCCCTGGTAGTAAATGTCCAAAACCAAGCCCTGTaGGTCAGTGAGGTAGACACCGTGGTTCAACGCATAGGCCAGGCT +
Preference number: 5 (lower is better)
Translates to: LRLSALVVNVQNQAL*VSEVDTVVQRIGQA
Trigger: AGCCTGGCCTATGCGTTGAACCACGGTGTCTACCTCACTGACTCACAGGGCTTGGTTTTGGACATTTACTACCAGGGCACTAAGGCGGAG
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000041382.7
ENSMUST00000212971.2
CDS-3UTR CAA 90 bp CAAGTCTCAGCCACTGCCCACCATGAAGCACAGTACTGTTTGCAAACACTGCCTCCTCTAACACATGCCTaGCCTTCTGCAAGGCCTGGC +
Preference number: 5 (lower is better)
Translates to: QVSATAHHEAQYCLQTLPPLTHA*PSARPG
Trigger: GCCAGGCCTTGCAGAAGGCAAGGCATGTGTTAGAGG...AGGCAGTGTTTGCAAACAGTACTGTGCTTCATGGTGGGCAGTGGCTGAGACTTG
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000041382.7
CDS-3UTR CAA 90 bp CACTACCACAGACCTGAGAACACACCTTCACTCTTCCCTGGCCCCTGCTGTAGAACCTGGACACTGTCCTaGTACTGGCATGTCAGGATA +
Preference number: 5 (lower is better)
Translates to: HYHRPENTPSLFPGPCCRTWTLS*YWHVRI
Trigger: TATCCTGACATGCCAGTACAAGGACAGTGTCCAGGT...TCTACAGCAGGGGCCAGGGAAGAGTGAAGGTGTGTTCTCAGGTCTGTGGTAGTG
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000041382.7
ENSMUST00000212971.2
CDS-3UTR CAA 90 bp CACTACCACAGACCTGAGAACACACCTTCACTCTTCCCTGGCCCCTGCTGTAGAATAATGACAGTCCAATaGACTCCCTCTGACTGCTCC +
Preference number: 5 (lower is better)
Translates to: HYHRPENTPSLFPGPCCRIMTVQ*TPSDCS
Trigger: GGAGCAGTCAGAGGGAGTCAATTGGACTGTCATTAT...TCTACAGCAGGGGCCAGGGAAGAGTGAAGGTGTGTTCTCAGGTCTGTGGTAGTG
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000041382.7
ENSMUST00000212971.2
CDS-3UTR CAA 90 bp GCTTCTTCTGCTCCCAGTATGAGGTCAGGTACTGTCCCAGCAGAGGCAGGTTTCCTCCCTTCAGGTAACTaGCTACATCCATGTCACCTT +
Preference number: 5 (lower is better)
Translates to: ASSAPSMRSGTVPAEAGFLPSGN*LHPCHL
Trigger: AAGGTGACATGGATGTAGCAAGTTACCTGAAGGGAG...GAAACCTGCCTCTGCTGGGACAGTACCTGACCTCATACTGGGAGCAGAAGAAGC
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000212971.2
CDS-3UTR CAA 90 bp ACAGACCTGAGAACACACCTTCACTCTTCCCTGGCCCCTGCTGTAGAATCAGAGAGGAGCAGATGGTCATaGATCTTCTGGACAAAGCCC +
Preference number: 5 (lower is better)
Translates to: TDLRTHLHSSLAPAVESERSRWS*IFWTKP
Trigger: GGGCTTTGTCCAGAAGATCAATGACCATCTGCTCCT...CTCTGATTCTACAGCAGGGGCCAGGGAAGAGTGAAGGTGTGTTCTCAGGTCTGT
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000041382.7
CDS-3UTR CAA 90 bp CTGCCCACCATGAAGCACAGTACTGTTTGCAAACACTGCCTCTTCTGTCCAAGTTCATTCCAGGACATGTaGAGATACATGCCTGCCCCC +
Preference number: 5 (lower is better)
Translates to: LPTMKHSTVCKHCLFCPSSFQDM*RYMPAP
Trigger: GGGGGCAGGCATGTATCTCAACATGTCCTGGAATGA...ACTTGGACAGAAGAGGCAGTGTTTGCAAACAGTACTGTGCTTCATGGTGGGCAG
51% GC, longest homopolymer 5 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000041382.7
CDS-3UTR CAA 90 bp CCTAGGAGGCCTACACTGGGCCATGGAATTTGTAGAGTGCACATGAGACACTGTCTCCCTTCAGGTAACTaGCTACATCCATGTCACCTT +
Preference number: 5 (lower is better)
Translates to: PRRPTLGHGICRVHMRHCLPSGN*LHPCHL
Trigger: AAGGTGACATGGATGTAGCAAGTTACCTGAAGGGAG...ACAGTGTCTCATGTGCACTCTACAAATTCCATGGCCCAGTGTAGGCCTCCTAGG
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000041382.7
ENSMUST00000212971.2
CDS-3UTR CAA 90 bp TTGAAAATTAGAATTTATTCCAAGGATGCGGGTGTTGAGAACCCACTACCCCCACGAATGCCTGTCTTCTaGAAGAACTCATTCCAGGAC +
Preference number: 5 (lower is better)
Translates to: LKIRIYSKDAGVENPLPPRMPVF*KNSFQD
Trigger: GTCCTGGAATGAGTTCTTCAAGAAGACAGGCATTCG...TGGGGGTAGTGGGTTCTCAACACCCGCATCCTTGGAATAAATTCTAATTTTCAA
44% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000041382.7
CDS-3UTR CAA 90 bp ACAAACTTGAAAATTAGAATTTATTCCAAGGATGCGGGTGTTGAGAACCCACTAATAATGACAGTCCAATaGACTCCCTCTGACTGCTCC +
Preference number: 5 (lower is better)
Translates to: TNLKIRIYSKDAGVENPLIMTVQ*TPSDCS
Trigger: GGAGCAGTCAGAGGGAGTCAATTGGACTGTCATTAT...TAGTGGGTTCTCAACACCCGCATCCTTGGAATAAATTCTAATTTTCAAGTTTGT
41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000212971.2
CDS TCA 72 bp GGGCACTCAAGTGTTCAGCAGCCACCAGCAGTGCGTTaGGGGTGGCTCCTCCGCTGCCGACTCGAGTCTGGG +
Preference number: 6 (lower is better)
Translates to: GHSSVQQPPAVR*GWLLRCRLESG
Trigger: CCCAGACTCGAGTCGGCAGCGGAGGAGCCACCCTCAACGCACTGCTGGTGGCTGCTGAACACTTGAGTGCCC
65% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000041382.7
ENSMUST00000212971.2
CDS CCA 72 bp GCGTTGAGGGTGGCTCCTCCGCTGCCGACTCGAGTCTaGGGATCCTCCACAGCCAGTAACATCGTCCCCGCA +
Preference number: 6 (lower is better)
Translates to: ALRVAPPLPTRV*GSSTASNIVPA
Trigger: TGCGGGGACGATGTTACTGGCTGTGGAGGATCCCCAGACTCGAGTCGGCAGCGGAGGAGCCACCCTCAACGC
65% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000041382.7
ENSMUST00000212971.2
CDS CAA 90 bp CTGGGCCCGGGCTCCCTTCAGGTAACTTGCTACATCCATGTCACCTaGCCCCAACTCCGGGGGCCGCCCAGCCAGGAAGTTCTCCCTGCT +
Preference number: 6 (lower is better)
Translates to: LGPGSLQVTCYIHVT*PQLRGPPSQEVLPA
Trigger: AGCAGGGAGAACTTCCTGGCTGGGCGGCCCCCGGAGTTGGGGCAAGGTGACATGGATGTAGCAAGTTACCTGAAGGGAGCCCGGGCCCAG
64% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000041382.7
ENSMUST00000212971.2
CDS TCA 72 bp GGGAGCCATGCAGCCGCACATGGTGTCCCTGCAGGATaGCATCATGGAGCTCCAGGCCATGCAGTGCCTCCG +
Preference number: 6 (lower is better)
Translates to: GSHAAAHGVPAG*HHGAPGHAVPP
Trigger: CGGAGGCACTGCATGGCCTGGAGCTCCATGATGTCATCCTGCAGGGACACCATGTGCGGCTGCATGGCTCCC
64% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000041382.7
ENSMUST00000212971.2
CDS CAA 90 bp CCTGGACCCAGCCGGTGGGTCATGATATCCAACAGGCAGTCCAGGTaGCATACCAAGGCCTCCACAGGGGCCTGTGGGTTCTCCACAGGG +
Preference number: 6 (lower is better)
Translates to: PGPSRWVMISNRQSR*HTKASTGACGFSTG
Trigger: CCCTGTGGAGAACCCACAGGCCCCTGTGGAGGCCTTGGTATGCAACCTGGACTGCCTGTTGGATATCATGACCCACCGGCTGGGTCCAGG
62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000041382.7
ENSMUST00000212971.2
CDS GCA 72 bp CGGCTCAGGGAGCCATGCAGCCGCACATGGTGTCCCTaGAGGATGACATCATGGAGCTCCAGGCCATGCAGT +
Preference number: 6 (lower is better)
Translates to: RLREPCSRTWCP*RMTSWSSRPCS
Trigger: ACTGCATGGCCTGGAGCTCCATGATGTCATCCTGCAGGGACACCATGTGCGGCTGCATGGCTCCCTGAGCCG
62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000041382.7
ENSMUST00000212971.2
CDS CCA 72 bp CCAGACCACTCACAAAGCAGCCAGCGCCGATGCGAATaGGGCCCCTCAGGTGACAGTGCTGCAGGACACTTC +
Preference number: 6 (lower is better)
Translates to: PDHSQSSQRRCE*GPSGDSAAGHF
Trigger: GAAGTGTCCTGCAGCACTGTCACCTGAGGGGCCCCATTCGCATCGGCGCTGGCTGCTTTGTGAGTGGTCTGG
62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000041382.7
ENSMUST00000212971.2
CDS GCA 72 bp CTGTATCCAGACCACTCACAAAGCAGCCAGCGCCGATaGGAATGGGGCCCCTCAGGTGACAGTGCTGCAGGA +
Preference number: 6 (lower is better)
Translates to: LYPDHSQSSQRR*EWGPSGDSAAG
Trigger: TCCTGCAGCACTGTCACCTGAGGGGCCCCATTCGCATCGGCGCTGGCTGCTTTGTGAGTGGTCTGGATACAG
61% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000041382.7
ENSMUST00000212971.2
CDS CCA 72 bp CAGAAGCATGTCGGTGCTGCAGACCCACACACCTGGTaGGGAACCTGGACCCAGCCGGTGGGTCATGATATC +
Preference number: 6 (lower is better)
Translates to: QKHVGAADPHTW*GTWTQPVGHDI
Trigger: GATATCATGACCCACCGGCTGGGTCCAGGTTCCCCACCAGGTGTGTGGGTCTGCAGCACCGACATGCTTCTG
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000041382.7
ENSMUST00000212971.2
CDS CCA 72 bp AGACAGAAGCATGTCGGTGCTGCAGACCCACACACCTaGTGGGGAACCTGGACCCAGCCGGTGGGTCATGAT +
Preference number: 6 (lower is better)
Translates to: RQKHVGAADPHT*WGTWTQPVGHD
Trigger: ATCATGACCCACCGGCTGGGTCCAGGTTCCCCACCAGGTGTGTGGGTCTGCAGCACCGACATGCTTCTGTCT
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000041382.7
ENSMUST00000212971.2
CDS CAA 72 bp GGCTCCCTTCAGGTAACTTGCTACATCCATGTCACCTaGCCCCAACTCCGGGGGCCGCCCAGCCAGGAAGTT +
Preference number: 6 (lower is better)
Translates to: GSLQVTCYIHVT*PQLRGPPSQEV
Trigger: AACTTCCTGGCTGGGCGGCCCCCGGAGTTGGGGCAAGGTGACATGGATGTAGCAAGTTACCTGAAGGGAGCC
61% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000041382.7
ENSMUST00000212971.2
CDS TCA 72 bp CACCTGGTGGGGAACCTGGACCCAGCCGGTGGGTCATaGTATCCAACAGGCAGTCCAGGTTGCATACCAAGG +
Preference number: 6 (lower is better)
Translates to: HLVGNLDPAGGS*YPTGSPGCIPR
Trigger: CCTTGGTATGCAACCTGGACTGCCTGTTGGATATCATGACCCACCGGCTGGGTCCAGGTTCCCCACCAGGTG
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000041382.7
ENSMUST00000212971.2
CDS TCA 72 bp TGTAGCTGTAGCCGCCGTCAGGGACATACACCATTGTaGGGGGCTGATCTCGAAGCTCCCTCCACAGCTGGG +
Preference number: 6 (lower is better)
Translates to: CSCSRRQGHTPL*GADLEAPSTAG
Trigger: CCCAGCTGTGGAGGGAGCTTCGAGATCAGCCCCTCACAATGGTGTATGTCCCTGACGGCGGCTACAGCTACA
60% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000041382.7
ENSMUST00000212971.2
CDS CCA 72 bp ACATCATGGAGCTCCAGGCCATGCAGTGCCTCCGAGTaGGCTGTATCCAGACCACTCACAAAGCAGCCAGCG +
Preference number: 6 (lower is better)
Translates to: TSWSSRPCSASE*AVSRPLTKQPA
Trigger: CGCTGGCTGCTTTGTGAGTGGTCTGGATACAGCCCACTCGGAGGCACTGCATGGCCTGGAGCTCCATGATGT
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000041382.7
ENSMUST00000212971.2
CDS CAA 72 bp AGCCGGTGGGTCATGATATCCAACAGGCAGTCCAGGTaGCATACCAAGGCCTCCACAGGGGCCTGTGGGTTC +
Preference number: 6 (lower is better)
Translates to: SRWVMISNRQSR*HTKASTGACGF
Trigger: GAACCCACAGGCCCCTGTGGAGGCCTTGGTATGCAACCTGGACTGCCTGTTGGATATCATGACCCACCGGCT
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000041382.7
ENSMUST00000212971.2
CDS TCA 72 bp GTAGCCTCTAGCAGCTGTGGCTCCTCCACCTGGGAGTaGACAATCTGTGCCACAGCTACTCCAGGCATCGTG +
Preference number: 6 (lower is better)
Translates to: VASSSCGSSTWE*TICATATPGIV
Trigger: CACGATGCCTGGAGTAGCTGTGGCACAGATTGTTCACTCCCAGGTGGAGGAGCCACAGCTGCTAGAGGCTAC
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000041382.7
ENSMUST00000212971.2
CDS GCA 72 bp CAGCTGTGGCTCCTCCACCTGGGAGTGAACAATCTGTaGCACAGCTACTCCAGGCATCGTGAGTCTGTGCAG +
Preference number: 6 (lower is better)
Translates to: QLWLLHLGVNNL*HSYSRHRESVQ
Trigger: CTGCACAGACTCACGATGCCTGGAGTAGCTGTGGCACAGATTGTTCACTCCCAGGTGGAGGAGCCACAGCTG
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000041382.7
ENSMUST00000212971.2
CDS CCA 72 bp GTAAATACACGGCTCAGGGAGCCATGCAGCCGCACATaGTGTCCCTGCAGGATGACATCATGGAGCTCCAGG +
Preference number: 6 (lower is better)
Translates to: VNTRLREPCSRT*CPCRMTSWSSR
Trigger: CCTGGAGCTCCATGATGTCATCCTGCAGGGACACCATGTGCGGCTGCATGGCTCCCTGAGCCGTGTATTTAC
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000041382.7
ENSMUST00000212971.2
CDS CAA 90 bp GACCCCGGAGACCAATGGTACCAGCCCATCAGGTCCGACACAACGTaGTATCTCCGCCTTAGTGCCCTGGTAGTAAATGTCCAAAACCAA +
Preference number: 6 (lower is better)
Translates to: DPGDQWYQPIRSDTT*YLRLSALVVNVQNQ
Trigger: TTGGTTTTGGACATTTACTACCAGGGCACTAAGGCGGAGATACAACGTTGTGTCGGACCTGATGGGCTGGTACCATTGGTCTCCGGGGTC
53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000041382.7
ENSMUST00000212971.2
CDS TCA 72 bp GGTAGTAAATGTCCAAAACCAAGCCCTGTGAGTCAGTaGGGTAGACACCGTGGTTCAACGCATAGGCCAGGC +
Preference number: 6 (lower is better)
Translates to: GSKCPKPSPVSQ*GRHRGSTHRPG
Trigger: GCCTGGCCTATGCGTTGAACCACGGTGTCTACCTCACTGACTCACAGGGCTTGGTTTTGGACATTTACTACC
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000041382.7
ENSMUST00000212971.2
CDS GCA 72 bp CAGCCAGGAAGTTCTCCCTGCTCATATTCCGAGCCATaGAGAGCAGGATGTCGAAAAACAGAGACAGCTGCA +
Preference number: 6 (lower is better)
Translates to: QPGSSPCSYSEP*RAGCRKTETAA
Trigger: TGCAGCTGTCTCTGTTTTTCGACATCCTGCTCTGCATGGCTCGGAATATGAGCAGGGAGAACTTCCTGGCTG
53% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000041382.7
ENSMUST00000212971.2
CDS CAA 72 bp GACCAATGGTACCAGCCCATCAGGTCCGACACAACGTaGTATCTCCGCCTTAGTGCCCTGGTAGTAAATGTC +
Preference number: 6 (lower is better)
Translates to: DQWYQPIRSDTT*YLRLSALVVNV
Trigger: GACATTTACTACCAGGGCACTAAGGCGGAGATACAACGTTGTGTCGGACCTGATGGGCTGGTACCATTGGTC
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000041382.7
ENSMUST00000212971.2
CDS CAA 90 bp CAGTCTCGAATGCCTGTCTTCTTGAAGAACTCATTCCAGGACATGTaGAGATACATGCCTGCCCCCTGTCTTTCCCAGCTGTCCAGACGG +
Preference number: 6 (lower is better)
Translates to: QSRMPVFLKNSFQDM*RYMPAPCLSQLSRR
Trigger: CCGTCTGGACAGCTGGGAAAGACAGGGGGCAGGCATGTATCTCAACATGTCCTGGAATGAGTTCTTCAAGAAGACAGGCATTCGAGACTG
52% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000041382.7
CDS TCA 72 bp AGTGCCCTGGTAGTAAATGTCCAAAACCAAGCCCTGTaGGTCAGTGAGGTAGACACCGTGGTTCAACGCATA +
Preference number: 6 (lower is better)
Translates to: SALVVNVQNQAL*VSEVDTVVQRI
Trigger: TATGCGTTGAACCACGGTGTCTACCTCACTGACTCACAGGGCTTGGTTTTGGACATTTACTACCAGGGCACT
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000041382.7
ENSMUST00000212971.2
CDS CAA 72 bp ATGCCTGTCTTCTTGAAGAACTCATTCCAGGACATGTaGAGATACATGCCTGCCCCCTGTCTTTCCCAGCTG +
Preference number: 6 (lower is better)
Translates to: MPVFLKNSFQDM*RYMPAPCLSQL
Trigger: CAGCTGGGAAAGACAGGGGGCAGGCATGTATCTCAACATGTCCTGGAATGAGTTCTTCAAGAAGACAGGCAT
50% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000041382.7