Pregenerated sensors for FCNB (Mus musculus)
Ensembl gene IDs: ENSMUSG00000026835Ensembl transcript IDs: ENSMUST00000028179.15, ENSMUST00000117486.8, ENSMUST00000135472.2
Found 58 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| CDS-3UTR TCA 90 bp | CTGATGTCAACCCTAGGCTCAAGGCCACCAGGGGGAGATGCAAAGCAGGCCCTTCCTGTAGCACATGACTaGGAGGGCCCAGAGTCTCCT | + |
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Preference number: 4 (lower is better) Translates to: LMSTLGSRPPGGDAKQALPVAHD*EGPESP Trigger: AGGAGACTCTGGGCCCTCTCAGTCATGTGCTACAGG...AAGGGCCTGCTTTGCATCTCCCCCTGGTGGCCTTGAGCCTAGGGTTGACATCAG 59% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000117486.8 |
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| CDS-3UTR GCA 90 bp | TCCTTAGCTAGCAGTGAAGATGGAAGAGTCTGGGAGGGGTGCTCCCTGTGTGGGATCTCCTTTGGCACCTaGCTCTCCCTTGGGCCCTGC | + |
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Preference number: 4 (lower is better) Translates to: SLASSEDGRVWEGCSLCGISFGT*LSLGPC Trigger: GCAGGGCCCAAGGGAGAGGCAGGTGCCAAAGGAGAT...CCCACACAGGGAGCACCCCTCCCAGACTCTTCCATCTTCACTGCTAGCTAAGGA 59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000028179.15 |
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| CDS-3UTR CCA 90 bp | TCCTTAGCTAGCAGTGAAGATGGAAGAGTCTGGGAGGGGTGCTCCCTGTGTGGGCCGTCAAGCCTCCTCTaGAAGACGGTCCAGCCTCCA | + |
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Preference number: 4 (lower is better) Translates to: SLASSEDGRVWEGCSLCGPSSLL*KTVQPP Trigger: TGGAGGCTGGACCGTCTTCCAGAGGAGGCTTGACGG...CCCACACAGGGAGCACCCCTCCCAGACTCTTCCATCTTCACTGCTAGCTAAGGA 59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000028179.15 |
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| CDS-3UTR CCA 90 bp | TCCTTAGCTAGCAGTGAAGATGGAAGAGTCTGGGAGGGGTGCTCCCTGTGTGGGCCACCCGCAGCTCACTaGTTCCCTGGGTGGTTAGAG | + |
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Preference number: 4 (lower is better) Translates to: SLASSEDGRVWEGCSLCGPPAAH*FPGWLE Trigger: CTCTAACCACCCAGGGAACCAGTGAGCTGCGGGTGG...CCCACACAGGGAGCACCCCTCCCAGACTCTTCCATCTTCACTGCTAGCTAAGGA 59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000028179.15 |
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| CDS-3UTR GCA 90 bp | TATTTCGCTGATGTCAACCCTAGGCTCAAGGCCACCAGGGGGAGATGCAAAGCACCCCCAAACCCAAGCTaGTCACCAGCACCACCGCCA | + |
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Preference number: 4 (lower is better) Translates to: YFADVNPRLKATRGRCKAPPNPS*SPAPPP Trigger: TGGCGGTGGTGCTGGTGAGCAGCTTGGGTTTGGGGG...TGCTTTGCATCTCCCCCTGGTGGCCTTGAGCCTAGGGTTGACATCAGCGAAATA 58% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt. Matches the following 1 transcripts: ENSMUST00000117486.8 |
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| CDS-3UTR TCA 90 bp | GTGGGTGGGCACACTCCATCCTTAGCTAGCAGTGAAGATGGAAGAGTCTGGGAGCCTGTAGCACATGACTaGGAGGGCCCAGAGTCTCCT | + |
|
Preference number: 4 (lower is better) Translates to: VGGHTPSLASSEDGRVWEPVAHD*EGPESP Trigger: AGGAGACTCTGGGCCCTCTCAGTCATGTGCTACAGG...CTCCCAGACTCTTCCATCTTCACTGCTAGCTAAGGATGGAGTGTGCCCACCCAC 57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000028179.15 |
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| CDS-3UTR CCA 90 bp | GTGGGTGGGCACACTCCATCCTTAGCTAGCAGTGAAGATGGAAGAGTCTGGGAGCAGAACTCCCCTAGTTaGCTGCCAAAGCCCCTCTTG | + |
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Preference number: 4 (lower is better) Translates to: VGGHTPSLASSEDGRVWEQNSPS*LPKPLL Trigger: CAAGAGGGGCTTTGGCAGCCAACTAGGGGAGTTCTG...CTCCCAGACTCTTCCATCTTCACTGCTAGCTAAGGATGGAGTGTGCCCACCCAC 56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000028179.15 |
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| CDS-3UTR CCA 90 bp | TCGCTGATGTCAACCCTAGGCTCAAGGCCACCAGGGGGAGATGCAAAGCAGGCCTGGGTGGTTAGAGCGTaGATATTATCATTCCCCAGC | + |
|
Preference number: 4 (lower is better) Translates to: SLMSTLGSRPPGGDAKQAWVVRA*ILSFPS Trigger: GCTGGGGAATGATAATATCCACGCTCTAACCACCCA...GGCCTGCTTTGCATCTCCCCCTGGTGGCCTTGAGCCTAGGGTTGACATCAGCGA 56% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000117486.8 |
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| CDS-3UTR CCA 90 bp | GCAGATATTAGTATTTCGCTGATGTCAACCCTAGGCTCAAGGCCACCAGGGGGACCACCCGCAGCTCACTaGTTCCCTGGGTGGTTAGAG | + |
|
Preference number: 4 (lower is better) Translates to: ADISISLMSTLGSRPPGGPPAAH*FPGWLE Trigger: CTCTAACCACCCAGGGAACCAGTGAGCTGCGGGTGG...TCCCCCTGGTGGCCTTGAGCCTAGGGTTGACATCAGCGAAATACTAATATCTGC 56% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000117486.8 |
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| CDS-3UTR CCA 90 bp | GTGGGTGGGCACACTCCATCCTTAGCTAGCAGTGAAGATGGAAGAGTCTGGGAGTTCTCGGCCTCTCCCTaGATCTGGAAGGAGCTGTAC | + |
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Preference number: 4 (lower is better) Translates to: VGGHTPSLASSEDGRVWEFSASP*IWKELY Trigger: GTACAGCTCCTTCCAGATCCAGGGAGAGGCCGAGAA...CTCCCAGACTCTTCCATCTTCACTGCTAGCTAAGGATGGAGTGTGCCCACCCAC 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000028179.15 |
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| CDS-3UTR CCA 90 bp | TCCTTAGCTAGCAGTGAAGATGGAAGAGTCTGGGAGGGGTGCTCCCTGTGTGGGAGAGGCCATTCAGGTTaGAAGTGTGGCACTGGGAGT | + |
|
Preference number: 4 (lower is better) Translates to: SLASSEDGRVWEGCSLCGRGHSG*KCGTGS Trigger: ACTCCCAGTGCCACACTTCCAACCTGAATGGCCTCT...CCCACACAGGGAGCACCCCTCCCAGACTCTTCCATCTTCACTGCTAGCTAAGGA 56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000028179.15 |
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| CDS-3UTR TCA 90 bp | TCCTTAGCTAGCAGTGAAGATGGAAGAGTCTGGGAGGGGTGCTCCCTGTGTGGGAACCTTGAAGGATGGTaGGCTGCTTGTAGCCTTCCA | + |
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Preference number: 4 (lower is better) Translates to: SLASSEDGRVWEGCSLCGNLEGW*AACSLP Trigger: TGGAAGGCTACAAGCAGCTCACCATCCTTCAAGGTT...CCCACACAGGGAGCACCCCTCCCAGACTCTTCCATCTTCACTGCTAGCTAAGGA 54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000028179.15 |
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| CDS-3UTR CCA 90 bp | GATATTAGTATTTCGCTGATGTCAACCCTAGGCTCAAGGCCACCAGGGGGAGATCCGTCAAGCCTCCTCTaGAAGACGGTCCAGCCTCCA | + |
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Preference number: 4 (lower is better) Translates to: DISISLMSTLGSRPPGGDPSSLL*KTVQPP Trigger: TGGAGGCTGGACCGTCTTCCAGAGGAGGCTTGACGG...ATCTCCCCCTGGTGGCCTTGAGCCTAGGGTTGACATCAGCGAAATACTAATATC 54% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000117486.8 |
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| CDS-3UTR CCA 90 bp | AGTATTTCGCTGATGTCAACCCTAGGCTCAAGGCCACCAGGGGGAGATGCAAAGCAGAACTCCCCTAGTTaGCTGCCAAAGCCCCTCTTG | + |
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Preference number: 4 (lower is better) Translates to: SISLMSTLGSRPPGGDAKQNSPS*LPKPLL Trigger: CAAGAGGGGCTTTGGCAGCCAACTAGGGGAGTTCTG...CTTTGCATCTCCCCCTGGTGGCCTTGAGCCTAGGGTTGACATCAGCGAAATACT 54% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 1 transcripts: ENSMUST00000117486.8 |
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| CDS-3UTR CCA 90 bp | CTGATGTCAACCCTAGGCTCAAGGCCACCAGGGGGAGATGCAAAGCAGGCCCTTGGAAGGAGCTGTACTTaGCAAAGTCATGCTTGCCTT | + |
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Preference number: 4 (lower is better) Translates to: LMSTLGSRPPGGDAKQALGRSCT*QSHACL Trigger: AAGGCAAGCATGACTTTGCCAAGTACAGCTCCTTCC...AAGGGCCTGCTTTGCATCTCCCCCTGGTGGCCTTGAGCCTAGGGTTGACATCAG 54% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000117486.8 |
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| CDS-3UTR GCA 90 bp | TCCTTAGCTAGCAGTGAAGATGGAAGAGTCTGGGAGGGGTGCTCCCTGTGTGGGCCAGTTGACACCATTTaGATAGCTCTTATGGGGACC | + |
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Preference number: 4 (lower is better) Translates to: SLASSEDGRVWEGCSLCGPVDTI*IALMGT Trigger: GGTCCCCATAAGAGCTATGCAAATGGTGTCAACTGG...CCCACACAGGGAGCACCCCTCCCAGACTCTTCCATCTTCACTGCTAGCTAAGGA 53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000028179.15 |
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| CDS-3UTR CCA 90 bp | TCCTTAGCTAGCAGTGAAGATGGAAGAGTCTGGGAGGGGTGCTCCCTGTGTGGGCTCCTTGGTTTCCTTTaGGTCCAGTTGGTCCTTCTT | + |
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Preference number: 4 (lower is better) Translates to: SLASSEDGRVWEGCSLCGLLGFL*VQLVLL Trigger: AAGAAGGACCAACTGGACCCAAAGGAAACCAAGGAG...CCCACACAGGGAGCACCCCTCCCAGACTCTTCCATCTTCACTGCTAGCTAAGGA 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000028179.15 |
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| CDS-3UTR CCA 90 bp | TCCTTAGCTAGCAGTGAAGATGGAAGAGTCTGGGAGGGGTGCTCCCTGTGTGGGTGGGTGGTTAGAGCGTaGATATTATCATTCCCCAGC | + |
|
Preference number: 4 (lower is better) Translates to: SLASSEDGRVWEGCSLCGWVVRA*ILSFPS Trigger: GCTGGGGAATGATAATATCCACGCTCTAACCACCCA...CCCACACAGGGAGCACCCCTCCCAGACTCTTCCATCTTCACTGCTAGCTAAGGA 53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000028179.15 |
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| CDS-3UTR CCA 90 bp | TCCTTAGCTAGCAGTGAAGATGGAAGAGTCTGGGAGGGGTGCTCCCTGTGTGGGGGAAGGAGCTGTACTTaGCAAAGTCATGCTTGCCTT | + |
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Preference number: 4 (lower is better) Translates to: SLASSEDGRVWEGCSLCGGRSCT*QSHACL Trigger: AAGGCAAGCATGACTTTGCCAAGTACAGCTCCTTCC...CCCACACAGGGAGCACCCCTCCCAGACTCTTCCATCTTCACTGCTAGCTAAGGA 53% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000028179.15 |
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| CDS-3UTR CCA 90 bp | GTGGGTGGGCACACTCCATCCTTAGCTAGCAGTGAAGATGGAAGAGTCTGGGAGAACCCATGGCACAGCTaGAAGTACTGCCGTCATTGT | + |
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Preference number: 4 (lower is better) Translates to: VGGHTPSLASSEDGRVWENPWHS*KYCRHC Trigger: ACAATGACGGCAGTACTTCCAGCTGTGCCATGGGTT...CTCCCAGACTCTTCCATCTTCACTGCTAGCTAAGGATGGAGTGTGCCCACCCAC 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000028179.15 |
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| CDS-3UTR TCA 90 bp | TCCTTAGCTAGCAGTGAAGATGGAAGAGTCTGGGAGGGGTGCTCCCTGTGTGGGTCCATGACTTCCAGTTaGCACCATTTGCATAGCTCT | + |
|
Preference number: 4 (lower is better) Translates to: SLASSEDGRVWEGCSLCGSMTSS*HHLHSS Trigger: AGAGCTATGCAAATGGTGTCAACTGGAAGTCATGGA...CCCACACAGGGAGCACCCCTCCCAGACTCTTCCATCTTCACTGCTAGCTAAGGA 52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000028179.15 |
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| CDS-3UTR CCA 90 bp | GATATTAGTATTTCGCTGATGTCAACCCTAGGCTCAAGGCCACCAGGGGGAGATTTCTCGGCCTCTCCCTaGATCTGGAAGGAGCTGTAC | + |
|
Preference number: 4 (lower is better) Translates to: DISISLMSTLGSRPPGGDFSASP*IWKELY Trigger: GTACAGCTCCTTCCAGATCCAGGGAGAGGCCGAGAA...ATCTCCCCCTGGTGGCCTTGAGCCTAGGGTTGACATCAGCGAAATACTAATATC 52% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000117486.8 |
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| CDS-3UTR GCA 90 bp | AAAGATGCAGATATTAGTATTTCGCTGATGTCAACCCTAGGCTCAAGGCCACCAATCTCCTTTGGCACCTaGCTCTCCCTTGGGCCCTGC | + |
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Preference number: 4 (lower is better) Translates to: KDADISISLMSTLGSRPPISFGT*LSLGPC Trigger: GCAGGGCCCAAGGGAGAGGCAGGTGCCAAAGGAGAT...TGGTGGCCTTGAGCCTAGGGTTGACATCAGCGAAATACTAATATCTGCATCTTT 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000117486.8 |
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| CDS-3UTR GCA 90 bp | TCCTTAGCTAGCAGTGAAGATGGAAGAGTCTGGGAGGGGTGCTCCCTGTGTGGGTACTTGGCAAAGTCATaGTTGCCTTCGAAGTCTGAA | + |
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Preference number: 4 (lower is better) Translates to: SLASSEDGRVWEGCSLCGYLAKS*LPSKSE Trigger: TTCAGACTTCGAAGGCAAGCATGACTTTGCCAAGTA...CCCACACAGGGAGCACCCCTCCCAGACTCTTCCATCTTCACTGCTAGCTAAGGA 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000028179.15 |
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| CDS-3UTR GCA 90 bp | GTGGGTGGGCACACTCCATCCTTAGCTAGCAGTGAAGATGGAAGAGTCTGGGAGTCATCTCAGAAACCTTaGAGCTGTAGTTGTACCCTC | + |
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Preference number: 4 (lower is better) Translates to: VGGHTPSLASSEDGRVWESSQKP*SCSCTL Trigger: GAGGGTACAACTACAGCTGCAAGGTTTCTGAGATGA...CTCCCAGACTCTTCCATCTTCACTGCTAGCTAAGGATGGAGTGTGCCCACCCAC 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000028179.15 |
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| CDS-3UTR CCA 90 bp | GTGGGTGGGCACACTCCATCCTTAGCTAGCAGTGAAGATGGAAGAGTCTGGGAGTCCTTTGGGTCCAGTTaGTCCTTCTTTTCCAGGAAT | + |
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Preference number: 4 (lower is better) Translates to: VGGHTPSLASSEDGRVWESFGSS*SFFSRN Trigger: ATTCCTGGAAAAGAAGGACCAACTGGACCCAAAGGA...CTCCCAGACTCTTCCATCTTCACTGCTAGCTAAGGATGGAGTGTGCCCACCCAC 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000028179.15 |
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| CDS-3UTR TCA 90 bp | GATATTAGTATTTCGCTGATGTCAACCCTAGGCTCAAGGCCACCAGGGGGAGATAACCTTGAAGGATGGTaGGCTGCTTGTAGCCTTCCA | + |
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Preference number: 4 (lower is better) Translates to: DISISLMSTLGSRPPGGDNLEGW*AACSLP Trigger: TGGAAGGCTACAAGCAGCTCACCATCCTTCAAGGTT...ATCTCCCCCTGGTGGCCTTGAGCCTAGGGTTGACATCAGCGAAATACTAATATC 50% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000117486.8 |
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| CDS-3UTR GCA 90 bp | ATTTCGCTGATGTCAACCCTAGGCTCAAGGCCACCAGGGGGAGATGCAAAGCAGTACTTGGCAAAGTCATaGTTGCCTTCGAAGTCTGAA | + |
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Preference number: 4 (lower is better) Translates to: ISLMSTLGSRPPGGDAKQYLAKS*LPSKSE Trigger: TTCAGACTTCGAAGGCAAGCATGACTTTGCCAAGTA...CTGCTTTGCATCTCCCCCTGGTGGCCTTGAGCCTAGGGTTGACATCAGCGAAAT 50% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000117486.8 |
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| CDS-3UTR CCA 90 bp | AGTATTTCGCTGATGTCAACCCTAGGCTCAAGGCCACCAGGGGGAGATGCAAAGTCCTTTGGGTCCAGTTaGTCCTTCTTTTCCAGGAAT | + |
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Preference number: 4 (lower is better) Translates to: SISLMSTLGSRPPGGDAKSFGSS*SFFSRN Trigger: ATTCCTGGAAAAGAAGGACCAACTGGACCCAAAGGA...CTTTGCATCTCCCCCTGGTGGCCTTGAGCCTAGGGTTGACATCAGCGAAATACT 50% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000117486.8 |
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| CDS-3UTR CCA 90 bp | TCCTTAGCTAGCAGTGAAGATGGAAGAGTCTGGGAGGGGTGCTCCCTGTGTGGGCATTGTCTTGGTCTTTaGTGGAGAATAACCTGTTGT | + |
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Preference number: 4 (lower is better) Translates to: SLASSEDGRVWEGCSLCGHCLGL*WRITCC Trigger: ACAACAGGTTATTCTCCACCAAAGACCAAGACAATG...CCCACACAGGGAGCACCCCTCCCAGACTCTTCCATCTTCACTGCTAGCTAAGGA 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000028179.15 |
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| CDS-3UTR CCA 90 bp | GATATTAGTATTTCGCTGATGTCAACCCTAGGCTCAAGGCCACCAGGGGGAGATCTCCTTGGTTTCCTTTaGGTCCAGTTGGTCCTTCTT | + |
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Preference number: 4 (lower is better) Translates to: DISISLMSTLGSRPPGGDLLGFL*VQLVLL Trigger: AAGAAGGACCAACTGGACCCAAAGGAAACCAAGGAG...ATCTCCCCCTGGTGGCCTTGAGCCTAGGGTTGACATCAGCGAAATACTAATATC 49% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000117486.8 |
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| CDS-3UTR CCA 90 bp | GTGGGTGGGCACACTCCATCCTTAGCTAGCAGTGAAGATGGAAGAGTCTGGGAGATTCCTTTTTCTCCTTaGTTTCCTTTGGGTCCAGTT | + |
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Preference number: 4 (lower is better) Translates to: VGGHTPSLASSEDGRVWEIPFSP*FPLGPV Trigger: AACTGGACCCAAAGGAAACCAAGGAGAAAAAGGAAT...CTCCCAGACTCTTCCATCTTCACTGCTAGCTAAGGATGGAGTGTGCCCACCCAC 49% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000028179.15 |
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| CDS-3UTR CAA 90 bp | TCCTTAGCTAGCAGTGAAGATGGAAGAGTCTGGGAGGGGTGCTCCCTGTGTGGGCAAGCCAGGGCAACCTaGAAGGATGGTGAGCTGCTT | + |
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Preference number: 5 (lower is better) Translates to: SLASSEDGRVWEGCSLCGQARAT*KDGELL Trigger: AAGCAGCTCACCATCCTTCAAGGTTGCCCTGGCTTG...CCCACACAGGGAGCACCCCTCCCAGACTCTTCCATCTTCACTGCTAGCTAAGGA 57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000028179.15 |
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| CDS-3UTR CAA 90 bp | TCGCTGATGTCAACCCTAGGCTCAAGGCCACCAGGGGGAGATGCAAAGCAGGCCTTTCCCAGGATAAGCTaGTATTTCTCGGCCTCTCCC | + |
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Preference number: 5 (lower is better) Translates to: SLMSTLGSRPPGGDAKQAFPRIS*YFSASP Trigger: GGGAGAGGCCGAGAAATACAAGCTTATCCTGGGAAA...GGCCTGCTTTGCATCTCCCCCTGGTGGCCTTGAGCCTAGGGTTGACATCAGCGA 57% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000117486.8 |
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| CDS GCA 90 bp | TCGGCCTCTCCCTGGATCTGGAAGGAGCTGTACTTGGCAAAGTCATaGTTGCCTTCGAAGTCTGAAAGATCCACCCGCAGCTCACTGGTT | + |
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Preference number: 5 (lower is better) Translates to: SASPWIWKELYLAKS*LPSKSERSTRSSLV Trigger: AACCAGTGAGCTGCGGGTGGATCTTTCAGACTTCGAAGGCAAGCATGACTTTGCCAAGTACAGCTCCTTCCAGATCCAGGGAGAGGCCGA 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000028179.15 ENSMUST00000117486.8 |
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| CDS-3UTR CAA 90 bp | AGTATTTCGCTGATGTCAACCCTAGGCTCAAGGCCACCAGGGGGAGATGCAAAGCAAGCCAGGGCAACCTaGAAGGATGGTGAGCTGCTT | + |
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Preference number: 5 (lower is better) Translates to: SISLMSTLGSRPPGGDAKQARAT*KDGELL Trigger: AAGCAGCTCACCATCCTTCAAGGTTGCCCTGGCTTG...CTTTGCATCTCCCCCTGGTGGCCTTGAGCCTAGGGTTGACATCAGCGAAATACT 54% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000117486.8 |
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| CDS-3UTR CAA 90 bp | TCCTTAGCTAGCAGTGAAGATGGAAGAGTCTGGGAGGGGTGCTCCCTGTGTGGGTCTCCTTGGTTTCCTTaGGGTCCAGTTGGTCCTTCT | + |
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Preference number: 5 (lower is better) Translates to: SLASSEDGRVWEGCSLCGSPWFP*GPVGPS Trigger: AGAAGGACCAACTGGACCCAAAGGAAACCAAGGAGA...CCCACACAGGGAGCACCCCTCCCAGACTCTTCCATCTTCACTGCTAGCTAAGGA 54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000028179.15 |
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| CDS-3UTR CAA 90 bp | TCCTTAGCTAGCAGTGAAGATGGAAGAGTCTGGGAGGGGTGCTCCCTGTGTGGGGAAGTACTGCCGTCATaGTCTTGGTCTTTGGTGGAG | + |
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Preference number: 5 (lower is better) Translates to: SLASSEDGRVWEGCSLCGEVLPS*SWSLVE Trigger: CTCCACCAAAGACCAAGACAATGACGGCAGTACTTC...CCCACACAGGGAGCACCCCTCCCAGACTCTTCCATCTTCACTGCTAGCTAAGGA 54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000028179.15 |
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| CDS-3UTR CAA 90 bp | GTGGGTGGGCACACTCCATCCTTAGCTAGCAGTGAAGATGGAAGAGTCTGGGAGTTTCCCAGGATAAGCTaGTATTTCTCGGCCTCTCCC | + |
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Preference number: 5 (lower is better) Translates to: VGGHTPSLASSEDGRVWEFPRIS*YFSASP Trigger: GGGAGAGGCCGAGAAATACAAGCTTATCCTGGGAAA...CTCCCAGACTCTTCCATCTTCACTGCTAGCTAAGGATGGAGTGTGCCCACCCAC 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000028179.15 |
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| CDS TCA 90 bp | TGGGTGAGCAACTCCTTGCAGGTCCGAGGTCCTGTAGCACATGACTaGGAGGGCCCAGAGTCTCCTTTTTCTCCACGTATTCCTTTTTCT | + |
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Preference number: 5 (lower is better) Translates to: WVSNSLQVRGPVAHD*EGPESPFSPRIPFS Trigger: AGAAAAAGGAATACGTGGAGAAAAAGGAGACTCTGGGCCCTCTCAGTCATGTGCTACAGGACCTCGGACCTGCAAGGAGTTGCTCACCCA 52% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt. Matches the following 2 transcripts: ENSMUST00000028179.15 ENSMUST00000117486.8 |
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| CDS-3UTR CAA 90 bp | GTGGGTGGGCACACTCCATCCTTAGCTAGCAGTGAAGATGGAAGAGTCTGGGAGTTCCTTTGGGTCCAGTaGGTCCTTCTTTTCCAGGAA | + |
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Preference number: 5 (lower is better) Translates to: VGGHTPSLASSEDGRVWEFLWVQ*VLLFQE Trigger: TTCCTGGAAAAGAAGGACCAACTGGACCCAAAGGAA...CTCCCAGACTCTTCCATCTTCACTGCTAGCTAAGGATGGAGTGTGCCCACCCAC 52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000028179.15 |
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| CDS-3UTR CAA 90 bp | TTCGCTGATGTCAACCCTAGGCTCAAGGCCACCAGGGGGAGATGCAAAGCAGGCTATTCCTTTTTCTCCTaGGTTTCCTTTGGGTCCAGT | + |
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Preference number: 5 (lower is better) Translates to: FADVNPRLKATRGRCKAGYSFFS*VSFGSS Trigger: ACTGGACCCAAAGGAAACCAAGGAGAAAAAGGAATA...GCCTGCTTTGCATCTCCCCCTGGTGGCCTTGAGCCTAGGGTTGACATCAGCGAA 52% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt. Matches the following 1 transcripts: ENSMUST00000117486.8 |
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| CDS-3UTR CAA 90 bp | TCCTTAGCTAGCAGTGAAGATGGAAGAGTCTGGGAGGGGTGCTCCCTGTGTGGGTATTCCTTTTTCTCCTaGGTTTCCTTTGGGTCCAGT | + |
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Preference number: 5 (lower is better) Translates to: SLASSEDGRVWEGCSLCGYSFFS*VSFGSS Trigger: ACTGGACCCAAAGGAAACCAAGGAGAAAAAGGAATA...CCCACACAGGGAGCACCCCTCCCAGACTCTTCCATCTTCACTGCTAGCTAAGGA 51% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000028179.15 |
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| CDS-3UTR CAA 90 bp | ATTAGTATTTCGCTGATGTCAACCCTAGGCTCAAGGCCACCAGGGGGAGATGCATTCCTTTGGGTCCAGTaGGTCCTTCTTTTCCAGGAA | + |
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Preference number: 5 (lower is better) Translates to: ISISLMSTLGSRPPGGDAFLWVQ*VLLFQE Trigger: TTCCTGGAAAAGAAGGACCAACTGGACCCAAAGGAA...TGCATCTCCCCCTGGTGGCCTTGAGCCTAGGGTTGACATCAGCGAAATACTAAT 50% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000117486.8 |
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| CDS CCA 90 bp | AAGTTTCCCAGGATAAGCTTGTATTTCTCGGCCTCTCCCTGGATCTaGAAGGAGCTGTACTTGGCAAAGTCATGCTTGCCTTCGAAGTCT | + |
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Preference number: 5 (lower is better) Translates to: KFPRISLYFSASPWI*KELYLAKSCLPSKS Trigger: AGACTTCGAAGGCAAGCATGACTTTGCCAAGTACAGCTCCTTCCAGATCCAGGGAGAGGCCGAGAAATACAAGCTTATCCTGGGAAACTT 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000028179.15 ENSMUST00000117486.8 |
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| CDS CCA 90 bp | TTCTCCACGTATTCCTTTTTCTCCTTGGTTTCCTTTGGGTCCAGTTaGTCCTTCTTTTCCAGGAATTCCAGGAAGGCCACTCTCTCCTCT | + |
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Preference number: 5 (lower is better) Translates to: FSTYSFFSLVSFGSS*SFFSRNSRKATLSS Trigger: AGAGGAGAGAGTGGCCTTCCTGGAATTCCTGGAAAAGAAGGACCAACTGGACCCAAAGGAAACCAAGGAGAAAAAGGAATACGTGGAGAA 48% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENSMUST00000028179.15 ENSMUST00000117486.8 |
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| CDS TCA 72 bp | GAGCAACTCCTTGCAGGTCCGAGGTCCTGTAGCACATaGCTGAGAGGGCCCAGAGTCTCCTTTTTCTCCACG | + |
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Preference number: 6 (lower is better) Translates to: EQLLAGPRSCST*LRGPRVSFFST Trigger: CGTGGAGAAAAAGGAGACTCTGGGCCCTCTCAGTCATGTGCTACAGGACCTCGGACCTGCAAGGAGTTGCTC 57% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENSMUST00000028179.15 ENSMUST00000117486.8 |
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| CDS TCA 72 bp | CAGCTCCAGGCAAGCCAGGGCAACCTTGAAGGATGGTaGGCTGCTTGTAGCCTTCCAGATCTAGGACCTTCA | + |
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Preference number: 6 (lower is better) Translates to: QLQASQGNLEGW*AACSLPDLGPS Trigger: TGAAGGTCCTAGATCTGGAAGGCTACAAGCAGCTCACCATCCTTCAAGGTTGCCCTGGCTTGCCTGGAGCTG 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000028179.15 ENSMUST00000117486.8 ENSMUST00000135472.2 |
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| CDS GCA 72 bp | CCCTGGATCTGGAAGGAGCTGTACTTGGCAAAGTCATaGTTGCCTTCGAAGTCTGAAAGATCCACCCGCAGC | + |
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Preference number: 6 (lower is better) Translates to: PWIWKELYLAKS*LPSKSERSTRS Trigger: GCTGCGGGTGGATCTTTCAGACTTCGAAGGCAAGCATGACTTTGCCAAGTACAGCTCCTTCCAGATCCAGGG 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000028179.15 ENSMUST00000117486.8 |
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| CDS TCA 72 bp | AACTCCTTGCAGGTCCGAGGTCCTGTAGCACATGACTaGGAGGGCCCAGAGTCTCCTTTTTCTCCACGTATT | + |
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Preference number: 6 (lower is better) Translates to: NSLQVRGPVAHD*EGPESPFSPRI Trigger: AATACGTGGAGAAAAAGGAGACTCTGGGCCCTCTCAGTCATGTGCTACAGGACCTCGGACCTGCAAGGAGTT 53% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENSMUST00000028179.15 ENSMUST00000117486.8 |
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| CDS GCA 72 bp | GGATCTGGAAGGAGCTGTACTTGGCAAAGTCATGCTTaGCTTCGAAGTCTGAAAGATCCACCCGCAGCTCAC | + |
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Preference number: 6 (lower is better) Translates to: GSGRSCTWQSHA*LRSLKDPPAAH Trigger: GTGAGCTGCGGGTGGATCTTTCAGACTTCGAAGGCAAGCATGACTTTGCCAAGTACAGCTCCTTCCAGATCC 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000028179.15 ENSMUST00000117486.8 |
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| CDS CCA 72 bp | TGCCTTCGAAGTCTGAAAGATCCACCCGCAGCTCACTaGTTCCCTGGGTGGTTAGAGCGTGGATATTATCAT | + |
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Preference number: 6 (lower is better) Translates to: CLRSLKDPPAAH*FPGWLERGYYH Trigger: ATGATAATATCCACGCTCTAACCACCCAGGGAACCAGTGAGCTGCGGGTGGATCTTTCAGACTTCGAAGGCA 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000028179.15 ENSMUST00000117486.8 |
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| CDS CCA 72 bp | TCTCGGCCTCTCCCTGGATCTGGAAGGAGCTGTACTTaGCAAAGTCATGCTTGCCTTCGAAGTCTGAAAGAT | + |
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Preference number: 6 (lower is better) Translates to: SRPLPGSGRSCT*QSHACLRSLKD Trigger: ATCTTTCAGACTTCGAAGGCAAGCATGACTTTGCCAAGTACAGCTCCTTCCAGATCCAGGGAGAGGCCGAGA 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000028179.15 ENSMUST00000117486.8 |
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| CDS CAA 72 bp | TGGATCTGGAAGGAGCTGTACTTGGCAAAGTCATGCTaGCCTTCGAAGTCTGAAAGATCCACCCGCAGCTCA | + |
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Preference number: 6 (lower is better) Translates to: WIWKELYLAKSC*PSKSERSTRSS Trigger: TGAGCTGCGGGTGGATCTTTCAGACTTCGAAGGCAAGCATGACTTTGCCAAGTACAGCTCCTTCCAGATCCA 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000028179.15 ENSMUST00000117486.8 |
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| CDS CCA 72 bp | AGGATAAGCTTGTATTTCTCGGCCTCTCCCTGGATCTaGAAGGAGCTGTACTTGGCAAAGTCATGCTTGCCT | + |
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Preference number: 6 (lower is better) Translates to: RISLYFSASPWI*KELYLAKSCLP Trigger: AGGCAAGCATGACTTTGCCAAGTACAGCTCCTTCCAGATCCAGGGAGAGGCCGAGAAATACAAGCTTATCCT 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000028179.15 ENSMUST00000117486.8 |
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| CDS CCA 72 bp | TTTCCCAGGATAAGCTTGTATTTCTCGGCCTCTCCCTaGATCTGGAAGGAGCTGTACTTGGCAAAGTCATGC | + |
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Preference number: 6 (lower is better) Translates to: FPRISLYFSASP*IWKELYLAKSC Trigger: GCATGACTTTGCCAAGTACAGCTCCTTCCAGATCCAGGGAGAGGCCGAGAAATACAAGCTTATCCTGGGAAA 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000028179.15 ENSMUST00000117486.8 |
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| CDS CAA 72 bp | TTCCTGAGGCAAGAGAACACGATACTTTGGGTCCAGTaGGTCCTTCTTTTCCAGGAATTCCAGGAAGGCCAC | + |
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Preference number: 6 (lower is better) Translates to: FLRQENTILWVQ*VLLFQEFQEGH Trigger: GTGGCCTTCCTGGAATTCCTGGAAAAGAAGGACCAACTGGACCCAAAGTATCGTGTTCTCTTGCCTCAGGAA 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000135472.2 |
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| CDS CCA 72 bp | CTCCTTGGTTTCCTGAGGCAAGAGAACACGATACTTTaGGTCCAGTTGGTCCTTCTTTTCCAGGAATTCCAG | + |
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Preference number: 6 (lower is better) Translates to: LLGFLRQENTIL*VQLVLLFQEFQ Trigger: CTGGAATTCCTGGAAAAGAAGGACCAACTGGACCCAAAGTATCGTGTTCTCTTGCCTCAGGAAACCAAGGAG 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000135472.2 |
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