RADAR | Search for sensor designs | Human genes | Mouse genes | Code

Pregenerated sensors for FCMR (Mus musculus)

Ensembl gene IDs: ENSMUSG00000042474

Ensembl transcript IDs: ENSMUST00000038829.7

Found 65 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).

Type Sensor Details
CDS-3UTR CCA 90 bp TCAAGGCATTCAGATAGTCAGGTGAGAGTCGACTTAGGGTATAGGACATACGCCGTCGGCCCGCACGTCTaGAGGAGGCTCTCCTCCTTT +
Preference number: 4 (lower is better)
Translates to: SRHSDSQVRVDLGYRTYAVGPHV*RRLSSF
Trigger: AAAGGAGGAGAGCCTCCTCCAGACGTGCGGGCCGAC...GGCGTATGTCCTATACCCTAAGTCGACTCTCACCTGACTATCTGAATGCCTTGA
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000038829.7
CDS-3UTR TCA 90 bp AGGCATTCAGATAGTCAGGTGAGAGTCGACTTAGGGTATAGGACATACGCCATGTCTGGGATGGGGATGTaGAGCCCTCGGTCTTCTCTC +
Preference number: 4 (lower is better)
Translates to: RHSDSQVRVDLGYRTYAMSGMGM*SPRSSL
Trigger: GAGAGAAGACCGAGGGCTTCACATCCCCATCCCAGA...CATGGCGTATGTCCTATACCCTAAGTCGACTCTCACCTGACTATCTGAATGCCT
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000038829.7
CDS-3UTR CCA 90 bp TCAAGGCATTCAGATAGTCAGGTGAGAGTCGACTTAGGGTATAGGACATACGCCGCTCATCTTCAGAGATaGGGTGTGGGGCCAAGGAGC +
Preference number: 4 (lower is better)
Translates to: SRHSDSQVRVDLGYRTYAAHLQR*GVGPRS
Trigger: GCTCCTTGGCCCCACACCCCATCTCTGAAGATGAGC...GGCGTATGTCCTATACCCTAAGTCGACTCTCACCTGACTATCTGAATGCCTTGA
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000038829.7
CDS-3UTR TCA 90 bp TCAAGGCATTCAGATAGTCAGGTGAGAGTCGACTTAGGGTATAGGACATACGCCCTGAGTGGAAGTCTTTaGGGCTGTGGTTGCTGGCAG +
Preference number: 4 (lower is better)
Translates to: SRHSDSQVRVDLGYRTYALSGSL*GCGCWQ
Trigger: CTGCCAGCAACCACAGCCTCAAAGACTTCCACTCAG...GGCGTATGTCCTATACCCTAAGTCGACTCTCACCTGACTATCTGAATGCCTTGA
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000038829.7
CDS-3UTR CCA 90 bp AGGCATTCAGATAGTCAGGTGAGAGTCGACTTAGGGTATAGGACATACGCCATGATTCAGCTGTACTTCTaGGAGGACTCTCAGGGCCCC +
Preference number: 4 (lower is better)
Translates to: RHSDSQVRVDLGYRTYAMIQLYF*EDSQGP
Trigger: GGGGCCCTGAGAGTCCTCCCAGAAGTACAGCTGAAT...CATGGCGTATGTCCTATACCCTAAGTCGACTCTCACCTGACTATCTGAATGCCT
51% GC, longest homopolymer 4 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000038829.7
CDS-3UTR CCA 90 bp TCAAGGCATTCAGATAGTCAGGTGAGAGTCGACTTAGGGTATAGGACATACGCCAAGTCTTTGAGGCTGTaGTTGCTGGCAGGAGCGCTG +
Preference number: 4 (lower is better)
Translates to: SRHSDSQVRVDLGYRTYAKSLRL*LLAGAL
Trigger: CAGCGCTCCTGCCAGCAACCACAGCCTCAAAGACTT...GGCGTATGTCCTATACCCTAAGTCGACTCTCACCTGACTATCTGAATGCCTTGA
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000038829.7
CDS-3UTR CCA 90 bp TCAAGGCATTCAGATAGTCAGGTGAGAGTCGACTTAGGGTATAGGACATACGCCTTCTCTCCCATAGTGTaGGCCATGGTGGCGTGTCCT +
Preference number: 4 (lower is better)
Translates to: SRHSDSQVRVDLGYRTYAFSPIV*AMVACP
Trigger: AGGACACGCCACCATGGCCCACACTATGGGAGAGAA...GGCGTATGTCCTATACCCTAAGTCGACTCTCACCTGACTATCTGAATGCCTTGA
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000038829.7
CDS-3UTR TCA 90 bp AGGCATTCAGATAGTCAGGTGAGAGTCGACTTAGGGTATAGGACATACGCCATGGTTGGGTTACTGAAGTaGTGCTGGAGGGCTGGTGAA +
Preference number: 4 (lower is better)
Translates to: RHSDSQVRVDLGYRTYAMVGLLK*CWRAGE
Trigger: TTCACCAGCCCTCCAGCATCACTTCAGTAACCCAAC...CATGGCGTATGTCCTATACCCTAAGTCGACTCTCACCTGACTATCTGAATGCCT
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000038829.7
CDS-3UTR TCA 90 bp TCATTCTCAAGGCATTCAGATAGTCAGGTGAGAGTCGACTTAGGGTATAGGACACGTGTCCTTTGCTCATaGAGTCTGGTGTGGTGGCTG +
Preference number: 4 (lower is better)
Translates to: SFSRHSDSQVRVDLGYRTRVLCS*SLVWWL
Trigger: CAGCCACCACACCAGACTTCATGAGCAAAGGACACG...TGTCCTATACCCTAAGTCGACTCTCACCTGACTATCTGAATGCCTTGAGAATGA
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000038829.7
CDS-3UTR TCA 90 bp AGGCATTCAGATAGTCAGGTGAGAGTCGACTTAGGGTATAGGACATACGCCATGGTCGGAATCAGGATGTaGAATTCTGGGATGGGGATG +
Preference number: 4 (lower is better)
Translates to: RHSDSQVRVDLGYRTYAMVGIRM*NSGMGM
Trigger: CATCCCCATCCCAGAATTTCACATCCTGATTCCGAC...CATGGCGTATGTCCTATACCCTAAGTCGACTCTCACCTGACTATCTGAATGCCT
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000038829.7
CDS-3UTR GCA 90 bp TCAAGGCATTCAGATAGTCAGGTGAGAGTCGACTTAGGGTATAGGACATACGCCTGCTGCAGAAATCTGTaGAACCATCTTGGCCGCTCA +
Preference number: 4 (lower is better)
Translates to: SRHSDSQVRVDLGYRTYACCRNL*NHLGRS
Trigger: TGAGCGGCCAAGATGGTTGCACAGATTTCTGCAGCA...GGCGTATGTCCTATACCCTAAGTCGACTCTCACCTGACTATCTGAATGCCTTGA
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000038829.7
CDS-3UTR CCA 90 bp TCATTCTCAAGGCATTCAGATAGTCAGGTGAGAGTCGACTTAGGGTATAGGACATGGAGCCAGGGCATCTaGTGCTGCAGAAATCTGTGC +
Preference number: 4 (lower is better)
Translates to: SFSRHSDSQVRVDLGYRTWSQGI*CCRNLC
Trigger: GCACAGATTTCTGCAGCACCAGATGCCCTGGCTCCA...TGTCCTATACCCTAAGTCGACTCTCACCTGACTATCTGAATGCCTTGAGAATGA
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000038829.7
CDS-3UTR CCA 90 bp TCAAGGCATTCAGATAGTCAGGTGAGAGTCGACTTAGGGTATAGGACATACGCCTGTGAAATTCTGGGATaGGGATGTGAAGCCCTCGGT +
Preference number: 4 (lower is better)
Translates to: SRHSDSQVRVDLGYRTYACEILG*GCEALG
Trigger: ACCGAGGGCTTCACATCCCCATCCCAGAATTTCACA...GGCGTATGTCCTATACCCTAAGTCGACTCTCACCTGACTATCTGAATGCCTTGA
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000038829.7
CDS-3UTR CCA 90 bp TCAAGGCATTCAGATAGTCAGGTGAGAGTCGACTTAGGGTATAGGACATACGCCCAGGATGTGAAATTCTaGGATGGGGATGTGAAGCCC +
Preference number: 4 (lower is better)
Translates to: SRHSDSQVRVDLGYRTYAQDVKF*DGDVKP
Trigger: GGGCTTCACATCCCCATCCCAGAATTTCACATCCTG...GGCGTATGTCCTATACCCTAAGTCGACTCTCACCTGACTATCTGAATGCCTTGA
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000038829.7
CDS-3UTR TCA 90 bp TCAAGGCATTCAGATAGTCAGGTGAGAGTCGACTTAGGGTATAGGACATACGCCTGGGGACTTGGTAGCTaGCACAGAAAATGCTCTGTA +
Preference number: 4 (lower is better)
Translates to: SRHSDSQVRVDLGYRTYAWGLGS*HRKCSV
Trigger: TACAGAGCATTTTCTGTGTCAGCTACCAAGTCCCCA...GGCGTATGTCCTATACCCTAAGTCGACTCTCACCTGACTATCTGAATGCCTTGA
48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000038829.7
CDS-3UTR TCA 90 bp TCATTCTCAAGGCATTCAGATAGTCAGGTGAGAGTCGACTTAGGGTATAGGACAGGCCTGATTGCTTGCTaGGTGGAAGTCTTTGAGGCT +
Preference number: 4 (lower is better)
Translates to: SFSRHSDSQVRVDLGYRTGLIAC*VEVFEA
Trigger: AGCCTCAAAGACTTCCACTCAGCAAGCAATCAGGCC...TGTCCTATACCCTAAGTCGACTCTCACCTGACTATCTGAATGCCTTGAGAATGA
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000038829.7
CDS-3UTR GCA 90 bp TCATTCTCAAGGCATTCAGATAGTCAGGTGAGAGTCGACTTAGGGTATAGGACAAGCCAGGGCATCTGGTaGTGCAGAAATCTGTGCAAC +
Preference number: 4 (lower is better)
Translates to: SFSRHSDSQVRVDLGYRTSQGIW*CRNLCN
Trigger: GTTGCACAGATTTCTGCAGCACCAGATGCCCTGGCT...TGTCCTATACCCTAAGTCGACTCTCACCTGACTATCTGAATGCCTTGAGAATGA
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000038829.7
CDS-3UTR CCA 90 bp TCATTCTCAAGGCATTCAGATAGTCAGGTGAGAGTCGACTTAGGGTATAGGACACTTCTTATCCAAGCATaGCGTCAGGGTGACTCGCCT +
Preference number: 4 (lower is better)
Translates to: SFSRHSDSQVRVDLGYRTLLIQA*RQGDSP
Trigger: AGGCGAGTCACCCTGACGCCATGCTTGGATAAGAAG...TGTCCTATACCCTAAGTCGACTCTCACCTGACTATCTGAATGCCTTGAGAATGA
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000038829.7
CDS-3UTR TCA 90 bp AGGCATTCAGATAGTCAGGTGAGAGTCGACTTAGGGTATAGGACATACGCCATGTATGGACATTCAGGGTaGTTTTCTGGGTCTTGCCTT +
Preference number: 4 (lower is better)
Translates to: RHSDSQVRVDLGYRTYAMYGHSG*FSGSCL
Trigger: AAGGCAAGACCCAGAAAATCACCCTGAATGTCCATA...CATGGCGTATGTCCTATACCCTAAGTCGACTCTCACCTGACTATCTGAATGCCT
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000038829.7
CDS-3UTR TCA 90 bp TCATTCTCAAGGCATTCAGATAGTCAGGTGAGAGTCGACTTAGGGTATAGGACAGAGGCTCTCCTCCTTTaGATGGCTCTTTTTACCACC +
Preference number: 4 (lower is better)
Translates to: SFSRHSDSQVRVDLGYRTEALLL*MALFTT
Trigger: GGTGGTAAAAAGAGCCATTCAAAGGAGGAGAGCCTC...TGTCCTATACCCTAAGTCGACTCTCACCTGACTATCTGAATGCCTTGAGAATGA
47% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000038829.7
CDS-3UTR CCA 90 bp AGGCATTCAGATAGTCAGGTGAGAGTCGACTTAGGGTATAGGACATACGCCATGCTCAGTCTTTGGAGTTaGCGTGGTAACTTTGGCTAT +
Preference number: 4 (lower is better)
Translates to: RHSDSQVRVDLGYRTYAMLSLWS*RGNFGY
Trigger: ATAGCCAAAGTTACCACGCCAACTCCAAAGACTGAG...CATGGCGTATGTCCTATACCCTAAGTCGACTCTCACCTGACTATCTGAATGCCT
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000038829.7
CDS-3UTR CCA 90 bp AGGCATTCAGATAGTCAGGTGAGAGTCGACTTAGGGTATAGGACATACGCCATGATGCTCTGTAAACTCTaGGATGTTGGGTTACTGAAG +
Preference number: 4 (lower is better)
Translates to: RHSDSQVRVDLGYRTYAMMLCKL*DVGLLK
Trigger: CTTCAGTAACCCAACATCCCAGAGTTTACAGAGCAT...CATGGCGTATGTCCTATACCCTAAGTCGACTCTCACCTGACTATCTGAATGCCT
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000038829.7
CDS-3UTR CCA 90 bp TCATTCTCAAGGCATTCAGATAGTCAGGTGAGAGTCGACTTAGGGTATAGGACACTCTCCTCCTTTGAATaGCTCTTTTTACCACCAGTC +
Preference number: 4 (lower is better)
Translates to: SFSRHSDSQVRVDLGYRTLSSFE*LFLPPV
Trigger: GACTGGTGGTAAAAAGAGCCATTCAAAGGAGGAGAG...TGTCCTATACCCTAAGTCGACTCTCACCTGACTATCTGAATGCCTTGAGAATGA
44% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000038829.7
CDS-3UTR CCA 90 bp AGGCATTCAGATAGTCAGGTGAGAGTCGACTTAGGGTATAGGACATACGCCATGTCTGGGTATTCATTATaGACATTCAGGGTGATTTTC +
Preference number: 4 (lower is better)
Translates to: RHSDSQVRVDLGYRTYAMSGYSL*TFRVIF
Trigger: GAAAATCACCCTGAATGTCCATAATGAATACCCAGA...CATGGCGTATGTCCTATACCCTAAGTCGACTCTCACCTGACTATCTGAATGCCT
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000038829.7
CDS-3UTR CCA 90 bp TCAAGGCATTCAGATAGTCAGGTGAGAGTCGACTTAGGGTATAGGACATACGCCTTCATCTTCCCAGAATaGTTCTGGGTATTCATTATG +
Preference number: 4 (lower is better)
Translates to: SRHSDSQVRVDLGYRTYAFIFPE*FWVFIM
Trigger: CATAATGAATACCCAGAACCATTCTGGGAAGATGAA...GGCGTATGTCCTATACCCTAAGTCGACTCTCACCTGACTATCTGAATGCCTTGA
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000038829.7
CDS-3UTR CCA 90 bp TCATTCTCAAGGCATTCAGATAGTCAGGTGAGAGTCGACTTAGGGTATAGGACAGCTAGGGAGATGAGATaGGTCAGGAATATTGATGTA +
Preference number: 4 (lower is better)
Translates to: SFSRHSDSQVRVDLGYRTAREMR*VRNIDV
Trigger: TACATCAATATTCCTGACCCATCTCATCTCCCTAGC...TGTCCTATACCCTAAGTCGACTCTCACCTGACTATCTGAATGCCTTGAGAATGA
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000038829.7
CDS-3UTR TCA 90 bp TCATTCTCAAGGCATTCAGATAGTCAGGTGAGAGTCGACTTAGGGTATAGGACATTTCATATTCCTTCTTaGCAAAGGTGTTGGACACCA +
Preference number: 4 (lower is better)
Translates to: SFSRHSDSQVRVDLGYRTFHIPS*QRCWTP
Trigger: TGGTGTCCAACACCTTTGTCAAGAAGGAATATGAAA...TGTCCTATACCCTAAGTCGACTCTCACCTGACTATCTGAATGCCTTGAGAATGA
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000038829.7
CDS-3UTR TCA 90 bp TCATTCTCAAGGCATTCAGATAGTCAGGTGAGAGTCGACTTAGGGTATAGGACAATGGGTCAGGAATATTaGTGTAATCATCTGAATCAG +
Preference number: 4 (lower is better)
Translates to: SFSRHSDSQVRVDLGYRTMGQEY*CNHLNQ
Trigger: CTGATTCAGATGATTACATCAATATTCCTGACCCAT...TGTCCTATACCCTAAGTCGACTCTCACCTGACTATCTGAATGCCTTGAGAATGA
41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000038829.7
CDS-3UTR CCA 90 bp TCATTCTCAAGGCATTCAGATAGTCAGGTGAGAGTCGACTTAGGGTATAGGACATTCCCAGAATGGTTCTaGGTATTCATTATGGACATT +
Preference number: 4 (lower is better)
Translates to: SFSRHSDSQVRVDLGYRTFPEWF*VFIMDI
Trigger: AATGTCCATAATGAATACCCAGAACCATTCTGGGAA...TGTCCTATACCCTAAGTCGACTCTCACCTGACTATCTGAATGCCTTGAGAATGA
41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000038829.7
CDS GCA 90 bp GTTGAGGAGCGGAGCCTCCGCTGGACCCAAGCTGTCTGGTCCCCGTaGGCGCCGGGGGCAGGCGCTGTAGACGTTGTTCTGCGAGCGCGG +
Preference number: 5 (lower is better)
Translates to: VEERSLRWTQAVWSP*APGAGAVDVVLRAR
Trigger: CCGCGCTCGCAGAACAACGTCTACAGCGCCTGCCCCCGGCGCGCACGGGGACCAGACAGCTTGGGTCCAGCGGAGGCTCCGCTCCTCAAC
71% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000038829.7
CDS CCA 90 bp AGGCTGGTAGCCCAAGCTCACGTATTCACAGCTCATCTTCAGAGATaGGGTGTGGGGCCAAGGAGCTTCAAGTACCTGCGGAGAAGCGGG +
Preference number: 5 (lower is better)
Translates to: RLVAQAHVFTAHLQR*GVGPRSFKYLRRSG
Trigger: CCCGCTTCTCCGCAGGTACTTGAAGCTCCTTGGCCCCACACCCCATCTCTGAAGATGAGCTGTGAATACGTGAGCTTGGGCTACCAGCCT
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000038829.7
CDS TCA 90 bp GCTCATGAAGTCTGGTGTGGTGGCTGTAGCTGGCCTCTAGGGGCCTaGTTGCTTGCTGAGTGGAAGTCTTTGAGGCTGTGGTTGCTGGCA +
Preference number: 5 (lower is better)
Translates to: AHEVWCGGCSWPLGA*LLAEWKSLRLWLLA
Trigger: TGCCAGCAACCACAGCCTCAAAGACTTCCACTCAGCAAGCAATCAGGCCCCTAGAGGCCAGCTACAGCCACCACACCAGACTTCATGAGC
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000038829.7
CDS CCA 90 bp GATGCTGGAGGGCTGGTGAACCGGAGGGGCCTCAGTCTTTGGAGTTaGCGTGGTAACTTTGGCTATGACTCCAGAAGAGCTGGGATGTTC +
Preference number: 5 (lower is better)
Translates to: DAGGLVNRRGLSLWS*RGNFGYDSRRAGMF
Trigger: GAACATCCCAGCTCTTCTGGAGTCATAGCCAAAGTTACCACGCCAACTCCAAAGACTGAGGCCCCTCCGGTTCACCAGCCCTCCAGCATC
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000038829.7
CDS TCA 90 bp CTCATCGCTAGTCGGCCCGCACGTCTGGAGGAGGCTCTCCTCCTTTaGATGGCTCTTTTTACCACCAGTCCCAAAAGAACCAGCAAGAGA +
Preference number: 5 (lower is better)
Translates to: LIASRPARLEEALLL*MALFTTSPKRTSKR
Trigger: TCTCTTGCTGGTTCTTTTGGGACTGGTGGTAAAAAGAGCCATTCAAAGGAGGAGAGCCTCCTCCAGACGTGCGGGCCGACTAGCGATGAG
54% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000038829.7
CDS GCA 90 bp TGTTCACTCCCGTGGAGCCAGGGCATCTGGTGCTGCAGAAATCTGTaGAACCATCTTGGCCGCTCAGAGGTCCATTCATCTTCCCAGAAT +
Preference number: 5 (lower is better)
Translates to: CSLPWSQGIWCCRNL*NHLGRSEVHSSSQN
Trigger: ATTCTGGGAAGATGAATGGACCTCTGAGCGGCCAAGATGGTTGCACAGATTTCTGCAGCACCAGATGCCCTGGCTCCACGGGAGTGAACA
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000038829.7
CDS CCA 90 bp GTGGAGCCAGGGCATCTGGTGCTGCAGAAATCTGTGCAACCATCTTaGCCGCTCAGAGGTCCATTCATCTTCCCAGAATGGTTCTGGGTA +
Preference number: 5 (lower is better)
Translates to: VEPGHLVLQKSVQPS*PLRGPFIFPEWFWV
Trigger: TACCCAGAACCATTCTGGGAAGATGAATGGACCTCTGAGCGGCCAAGATGGTTGCACAGATTTCTGCAGCACCAGATGCCCTGGCTCCAC
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000038829.7
CDS CCA 90 bp TCGCTAGTCGGCCCGCACGTCTGGAGGAGGCTCTCCTCCTTTGAATaGCTCTTTTTACCACCAGTCCCAAAAGAACCAGCAAGAGAAAGC +
Preference number: 5 (lower is better)
Translates to: SLVGPHVWRRLSSFE*LFLPPVPKEPARES
Trigger: GCTTTCTCTTGCTGGTTCTTTTGGGACTGGTGGTAAAAAGAGCCATTCAAAGGAGGAGAGCCTCCTCCAGACGTGCGGGCCGACTAGCGA
54% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000038829.7
CDS CCA 90 bp GTAACTTTGGCTATGACTCCAGAAGAGCTGGGATGTTCACTCCCGTaGAGCCAGGGCATCTGGTGCTGCAGAAATCTGTGCAACCATCTT +
Preference number: 5 (lower is better)
Translates to: VTLAMTPEELGCSLP*SQGIWCCRNLCNHL
Trigger: AAGATGGTTGCACAGATTTCTGCAGCACCAGATGCCCTGGCTCCACGGGAGTGAACATCCCAGCTCTTCTGGAGTCATAGCCAAAGTTAC
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000038829.7
CDS-3UTR CAA 90 bp TCATTCTCAAGGCATTCAGATAGTCAGGTGAGAGTCGACTTAGGGTATAGGACAGAGCATATCCCAGGTTaGGCCATCTGCCGACACAGA +
Preference number: 5 (lower is better)
Translates to: SFSRHSDSQVRVDLGYRTEHIPG*AICRHR
Trigger: TCTGTGTCGGCAGATGGCCAAACCTGGGATATGCTC...TGTCCTATACCCTAAGTCGACTCTCACCTGACTATCTGAATGCCTTGAGAATGA
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000038829.7
CDS-3UTR CAA 90 bp TCAAGGCATTCAGATAGTCAGGTGAGAGTCGACTTAGGGTATAGGACATACGCCTTCTGGGTCTTGCCTTaGTCTGTCTTCATGCCCACA +
Preference number: 5 (lower is better)
Translates to: SRHSDSQVRVDLGYRTYAFWVLP*SVFMPT
Trigger: TGTGGGCATGAAGACAGACAAAGGCAAGACCCAGAA...GGCGTATGTCCTATACCCTAAGTCGACTCTCACCTGACTATCTGAATGCCTTGA
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000038829.7
CDS-3UTR CAA 90 bp AGGCATTCAGATAGTCAGGTGAGAGTCGACTTAGGGTATAGGACATACGCCATGGGAGGCTCTCCTCCTTaGAATGGCTCTTTTTACCAC +
Preference number: 5 (lower is better)
Translates to: RHSDSQVRVDLGYRTYAMGGSPP*NGSFYH
Trigger: GTGGTAAAAAGAGCCATTCAAAGGAGGAGAGCCTCC...CATGGCGTATGTCCTATACCCTAAGTCGACTCTCACCTGACTATCTGAATGCCT
49% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000038829.7
CDS-3UTR CAA 90 bp TCAAGGCATTCAGATAGTCAGGTGAGAGTCGACTTAGGGTATAGGACATACGCCTTCTTGACAAAGGTGTaGGACACCACAGTGGAGCAT +
Preference number: 5 (lower is better)
Translates to: SRHSDSQVRVDLGYRTYAFLTKV*DTTVEH
Trigger: ATGCTCCACTGTGGTGTCCAACACCTTTGTCAAGAA...GGCGTATGTCCTATACCCTAAGTCGACTCTCACCTGACTATCTGAATGCCTTGA
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000038829.7
CDS-3UTR CAA 90 bp TCATTCTCAAGGCATTCAGATAGTCAGGTGAGAGTCGACTTAGGGTATAGGACAAGGAGCGCTGGGGACTaGGTAGCTGACACAGAAAAT +
Preference number: 5 (lower is better)
Translates to: SFSRHSDSQVRVDLGYRTRSAGD*VADTEN
Trigger: ATTTTCTGTGTCAGCTACCAAGTCCCCAGCGCTCCT...TGTCCTATACCCTAAGTCGACTCTCACCTGACTATCTGAATGCCTTGAGAATGA
48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000038829.7
CDS-3UTR CAA 90 bp TCAAGGCATTCAGATAGTCAGGTGAGAGTCGACTTAGGGTATAGGACATACGCCGTGATTTTCTGGGTCTaGCCTTTGTCTGTCTTCATG +
Preference number: 5 (lower is better)
Translates to: SRHSDSQVRVDLGYRTYAVIFWV*PLSVFM
Trigger: CATGAAGACAGACAAAGGCAAGACCCAGAAAATCAC...GGCGTATGTCCTATACCCTAAGTCGACTCTCACCTGACTATCTGAATGCCTTGA
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000038829.7
CDS-3UTR CAA 90 bp AGGCATTCAGATAGTCAGGTGAGAGTCGACTTAGGGTATAGGACATACGCCATGCTTTCATATTCCTTCTaGACAAAGGTGTTGGACACC +
Preference number: 5 (lower is better)
Translates to: RHSDSQVRVDLGYRTYAMLSYSF*TKVLDT
Trigger: GGTGTCCAACACCTTTGTCAAGAAGGAATATGAAAG...CATGGCGTATGTCCTATACCCTAAGTCGACTCTCACCTGACTATCTGAATGCCT
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000038829.7
CDS CCA 72 bp GTTGAGGAGCGGAGCCTCCGCTGGACCCAAGCTGTCTaGTCCCCGTGCGCGCCGGGGGCAGGCGCTGTAGAC +
Preference number: 6 (lower is better)
Translates to: VEERSLRWTQAV*SPCAPGAGAVD
Trigger: GTCTACAGCGCCTGCCCCCGGCGCGCACGGGGACCAGACAGCTTGGGTCCAGCGGAGGCTCCGCTCCTCAAC
72% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000038829.7
CDS GCA 72 bp CGGAGCCTCCGCTGGACCCAAGCTGTCTGGTCCCCGTaGGCGCCGGGGGCAGGCGCTGTAGACGTTGTTCTG +
Preference number: 6 (lower is better)
Translates to: RSLRWTQAVWSP*APGAGAVDVVL
Trigger: CAGAACAACGTCTACAGCGCCTGCCCCCGGCGCGCACGGGGACCAGACAGCTTGGGTCCAGCGGAGGCTCCG
71% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000038829.7
CDS CAA 72 bp ACCTGCGGAGAAGCGGGGGACGCTGAGGCTGGGGCGTaGAGGAGCGGAGCCTCCGCTGGACCCAAGCTGTCT +
Preference number: 6 (lower is better)
Translates to: TCGEAGDAEAGA*RSGASAGPKLS
Trigger: AGACAGCTTGGGTCCAGCGGAGGCTCCGCTCCTCAACGCCCCAGCCTCAGCGTCCCCCGCTTCTCCGCAGGT
69% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000038829.7
CDS TCA 72 bp GTCTGGTGTGGTGGCTGTAGCTGGCCTCTAGGGGCCTaGTTGCTTGCTGAGTGGAAGTCTTTGAGGCTGTGG +
Preference number: 6 (lower is better)
Translates to: VWCGGCSWPLGA*LLAEWKSLRLW
Trigger: CCACAGCCTCAAAGACTTCCACTCAGCAAGCAATCAGGCCCCTAGAGGCCAGCTACAGCCACCACACCAGAC
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000038829.7
CDS GCA 72 bp CCGTGGAGCCAGGGCATCTGGTGCTGCAGAAATCTGTaGAACCATCTTGGCCGCTCAGAGGTCCATTCATCT +
Preference number: 6 (lower is better)
Translates to: PWSQGIWCCRNL*NHLGRSEVHSS
Trigger: AGATGAATGGACCTCTGAGCGGCCAAGATGGTTGCACAGATTTCTGCAGCACCAGATGCCCTGGCTCCACGG
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000038829.7
CDS CCA 72 bp GCCCAAGCTCACGTATTCACAGCTCATCTTCAGAGATaGGGTGTGGGGCCAAGGAGCTTCAAGTACCTGCGG +
Preference number: 6 (lower is better)
Translates to: AQAHVFTAHLQR*GVGPRSFKYLR
Trigger: CCGCAGGTACTTGAAGCTCCTTGGCCCCACACCCCATCTCTGAAGATGAGCTGTGAATACGTGAGCTTGGGC
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000038829.7
CDS CAA 72 bp TTCTCTCCCATAGTGTGGGCCATGGTGGCGTGTCCTTaGCTCATGAAGTCTGGTGTGGTGGCTGTAGCTGGC +
Preference number: 6 (lower is better)
Translates to: FSPIVWAMVACP*LMKSGVVAVAG
Trigger: GCCAGCTACAGCCACCACACCAGACTTCATGAGCAAAGGACACGCCACCATGGCCCACACTATGGGAGAGAA
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000038829.7
CDS CAA 90 bp CGTGGAGCCAGGGCATCTGGTGCTGCAGAAATCTGTGCAACCATCTaGGCCGCTCAGAGGTCCATTCATCTTCCCAGAATGGTTCTGGGT +
Preference number: 6 (lower is better)
Translates to: RGARASGAAEICATI*AAQRSIHLPRMVLG
Trigger: ACCCAGAACCATTCTGGGAAGATGAATGGACCTCTGAGCGGCCAAGATGGTTGCACAGATTTCTGCAGCACCAGATGCCCTGGCTCCACG
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000038829.7
CDS CCA 72 bp GGGCATCTGGTGCTGCAGAAATCTGTGCAACCATCTTaGCCGCTCAGAGGTCCATTCATCTTCCCAGAATGG +
Preference number: 6 (lower is better)
Translates to: GHLVLQKSVQPS*PLRGPFIFPEW
Trigger: CCATTCTGGGAAGATGAATGGACCTCTGAGCGGCCAAGATGGTTGCACAGATTTCTGCAGCACCAGATGCCC
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000038829.7
CDS CCA 72 bp AAAGCCCAGGAAGGTCGGAATCAGGATGTGAAATTCTaGGATGGGGATGTGAAGCCCTCGGTCTTCTCTCCC +
Preference number: 6 (lower is better)
Translates to: KAQEGRNQDVKF*DGDVKPSVFSP
Trigger: GGGAGAGAAGACCGAGGGCTTCACATCCCCATCCCAGAATTTCACATCCTGATTCCGACCTTCCTGGGCTTT
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000038829.7
CDS TCA 72 bp AGAAAATGCTCTGTAAACTCTGGGATGTTGGGTTACTaGAGTGATGCTGGAGGGCTGGTGAACCGGAGGGGC +
Preference number: 6 (lower is better)
Translates to: RKCSVNSGMLGY*SDAGGLVNRRG
Trigger: GCCCCTCCGGTTCACCAGCCCTCCAGCATCACTTCAGTAACCCAACATCCCAGAGTTTACAGAGCATTTTCT
53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000038829.7
CDS TCA 72 bp TGTGGTTGCTGGCAGGAGCGCTGGGGACTTGGTAGCTaGCACAGAAAATGCTCTGTAAACTCTGGGATGTTG +
Preference number: 6 (lower is better)
Translates to: CGCWQERWGLGS*HRKCSVNSGML
Trigger: CAACATCCCAGAGTTTACAGAGCATTTTCTGTGTCAGCTACCAAGTCCCCAGCGCTCCTGCCAGCAACCACA
53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000038829.7
CDS CAA 72 bp AGGGCATCTGGTGCTGCAGAAATCTGTGCAACCATCTaGGCCGCTCAGAGGTCCATTCATCTTCCCAGAATG +
Preference number: 6 (lower is better)
Translates to: RASGAAEICATI*AAQRSIHLPRM
Trigger: CATTCTGGGAAGATGAATGGACCTCTGAGCGGCCAAGATGGTTGCACAGATTTCTGCAGCACCAGATGCCCT
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000038829.7
CDS CCA 72 bp AGGTGTTGGACACCACAGTGGAGCATATCCCAGGTTTaGCCATCTGCCGACACAGATACATCCTTACGTGTA +
Preference number: 6 (lower is better)
Translates to: RCWTPQWSISQV*PSADTDTSLRV
Trigger: TACACGTAAGGATGTATCTGTGTCGGCAGATGGCCAAACCTGGGATATGCTCCACTGTGGTGTCCAACACCT
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000038829.7
CDS CAA 72 bp AAGGTGTTGGACACCACAGTGGAGCATATCCCAGGTTaGGCCATCTGCCGACACAGATACATCCTTACGTGT +
Preference number: 6 (lower is better)
Translates to: KVLDTTVEHIPG*AICRHRYILTC
Trigger: ACACGTAAGGATGTATCTGTGTCGGCAGATGGCCAAACCTGGGATATGCTCCACTGTGGTGTCCAACACCTT
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000038829.7
CDS CAA 72 bp GTGACTCGCCTTTCATATTCCTTCTTGACAAAGGTGTaGGACACCACAGTGGAGCATATCCCAGGTTTGGCC +
Preference number: 6 (lower is better)
Translates to: VTRLSYSFLTKV*DTTVEHIPGLA
Trigger: GGCCAAACCTGGGATATGCTCCACTGTGGTGTCCAACACCTTTGTCAAGAAGGAATATGAAAGGCGAGTCAC
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000038829.7
CDS CAA 72 bp CATGGCGTCAGGGTGACTCGCCTTTCATATTCCTTCTaGACAAAGGTGTTGGACACCACAGTGGAGCATATC +
Preference number: 6 (lower is better)
Translates to: HGVRVTRLSYSF*TKVLDTTVEHI
Trigger: GATATGCTCCACTGTGGTGTCCAACACCTTTGTCAAGAAGGAATATGAAAGGCGAGTCACCCTGACGCCATG
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000038829.7
CDS CAA 90 bp TTATCCAAGCATGGCGTCAGGGTGACTCGCCTTTCATATTCCTTCTaGACAAAGGTGTTGGACACCACAGTGGAGCATATCCCAGGTTTG +
Preference number: 6 (lower is better)
Translates to: LSKHGVRVTRLSYSF*TKVLDTTVEHIPGL
Trigger: CAAACCTGGGATATGCTCCACTGTGGTGTCCAACACCTTTGTCAAGAAGGAATATGAAAGGCGAGTCACCCTGACGCCATGCTTGGATAA
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000038829.7
CDS CCA 72 bp TCTTGGCCGCTCAGAGGTCCATTCATCTTCCCAGAATaGTTCTGGGTATTCATTATGGACATTCAGGGTGAT +
Preference number: 6 (lower is better)
Translates to: SWPLRGPFIFPE*FWVFIMDIQGD
Trigger: ATCACCCTGAATGTCCATAATGAATACCCAGAACCATTCTGGGAAGATGAATGGACCTCTGAGCGGCCAAGA
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000038829.7
CDS CAA 72 bp TATTCATTATGGACATTCAGGGTGATTTTCTGGGTCTaGCCTTTGTCTGTCTTCATGCCCACACCACAGGCA +
Preference number: 6 (lower is better)
Translates to: YSLWTFRVIFWV*PLSVFMPTPQA
Trigger: TGCCTGTGGTGTGGGCATGAAGACAGACAAAGGCAAGACCCAGAAAATCACCCTGAATGTCCATAATGAATA
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000038829.7