Pregenerated sensors for FCGRT (Mus musculus)
Ensembl gene IDs: ENSMUSG00000003420Ensembl transcript IDs: ENSMUST00000003512.9, ENSMUST00000210642.2, ENSMUST00000211085.2
Found 58 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR CCA 90 bp | ACATTAAGAAGGGAAACTGAAGCAGGCCACAAAAGCAGGGATCCATaGGAGGACATCGGGCCCAGGCTCCCTCAGGAGGCTCGGAGACAG | + |
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Preference number: 1 (lower is better) Translates to: TLRRETEAGHKSRDP*EDIGPRLPQEARRQ Trigger: CTGTCTCCGAGCCTCCTGAGGGAGCCTGGGCCCGATGTCCTCCCATGGATCCCTGCTTTTGTGGCCTGCTTCAGTTTCCCTTCTTAATGT 58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000003512.9 ENSMUST00000210642.2 |
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| 3UTR-3UTR GCA 90 bp | AATTTATGTGGAGATGGAAAACAACCATGTACATTAAGAAGGGAAACTGAAGCACACAGCCCGAAAGGCTaGAGTGGGCAGGGGGCCCGA | + |
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Preference number: 2 (lower is better) Translates to: NLCGDGKQPCTLRRETEAHSPKG*SGQGAR Trigger: TCGGGCCCCCTGCCCACTGCAGCCTTTCGGGCTGTG...TGCTTCAGTTTCCCTTCTTAATGTACATGGTTGTTTTCCATCTCCACATAAATT 49% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENSMUST00000003512.9 ENSMUST00000210642.2 |
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| 3UTR-3UTR TCA 90 bp | AATAACGATGCACACACAGATTTGGGGCCAAATTTATGTGGAGATGGAAAACAAATTAAGAAGGGAAACTaGAGCAGGCCACAAAAGCAG | + |
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Preference number: 2 (lower is better) Translates to: NNDAHTDLGPNLCGDGKQIKKGN*SRPQKQ Trigger: CTGCTTTTGTGGCCTGCTTCAGTTTCCCTTCTTAAT...TTGTTTTCCATCTCCACATAAATTTGGCCCCAAATCTGTGTGTGCATCGTTATT 41% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 1 transcripts: ENSMUST00000003512.9 |
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| 3UTR CAA 90 bp | TATTCCAGCTGCTTGAAACTTGAGAATAACGATGCACACACAGATTaGGGGCCAAATTTATGTGGAGATGGAAAACAACCATGTACATTA | + |
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Preference number: 2 (lower is better) Translates to: YSSCLKLENNDAHTD*GPNLCGDGKQPCTL Trigger: TAATGTACATGGTTGTTTTCCATCTCCACATAAATTTGGCCCCAAATCTGTGTGTGCATCGTTATTCTCAAGTTTCAAGCAGCTGGAATA 39% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000003512.9 |
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| 3UTR GCA 72 bp | TATGATCTTTCCCAGACGCGTTCAATTTATTCCAGCTaGTTGAAACTTGAGAATAACGATGCACACACAGAT | + |
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Preference number: 3 (lower is better) Translates to: YDLSQTRSIYSS*LKLENNDAHTD Trigger: ATCTGTGTGTGCATCGTTATTCTCAAGTTTCAAGCAGCTGGAATAAATTGAACGCGTCTGGGAAAGATCATA 40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000003512.9 |
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| CDS-3UTR GCA 90 bp | GGAGGACATCGGGCCCAGGCTCCCTCAGGAGGCTCGGAGACAGTTCAGGAGGTCGGGCTGGCAGACCGCTaGGCATCCTGCCCCACAACA | + |
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Preference number: 4 (lower is better) Translates to: GGHRAQAPSGGSETVQEVGLADR*ASCPTT Trigger: TGTTGTGGGGCAGGATGCGCAGCGGTCTGCCAGCCC...GACCTCCTGAACTGTCTCCGAGCCTCCTGAGGGAGCCTGGGCCCGATGTCCTCC 67% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000003512.9 ENSMUST00000210642.2 |
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| CDS-3UTR CCA 90 bp | GCTCGGAGACAGTTCAGGAGGTCACACAGCCCGAAAGGCTGCAGTGGGCAGGGGCGGCCCCTCTCCAGGTaGCCTAGCAGTCGCTCCGGA | + |
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Preference number: 4 (lower is better) Translates to: ARRQFRRSHSPKGCSGQGRPLSR*PSSRSG Trigger: TCCGGAGCGACTGCTAGGCCACCTGGAGAGGGGCCG...CCCCTGCCCACTGCAGCCTTTCGGGCTGTGTGACCTCCTGAACTGTCTCCGAGC 67% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000003512.9 ENSMUST00000210642.2 |
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| CDS-3UTR CCA 90 bp | ATCGGGCCCAGGCTCCCTCAGGAGGCTCGGAGACAGTTCAGGAGGTCACACAGCGCTGAGAGAAAGCCATaGGGCTGGCAGACCGCTGCG | + |
|
Preference number: 4 (lower is better) Translates to: IGPRLPQEARRQFRRSHSAERKP*GWQTAA Trigger: CGCAGCGGTCTGCCAGCCCCATGGCTTTCTCTCAGC...GCTGTGTGACCTCCTGAACTGTCTCCGAGCCTCCTGAGGGAGCCTGGGCCCGAT 64% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000003512.9 ENSMUST00000210642.2 |
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| CDS-3UTR TCA 90 bp | GGCTCGGAGACAGTTCAGGAGGTCACACAGCCCGAAAGGCTGCAGTGGGCAGGGTCTGAGCCCCAGGTCTaGGGCAGGAGGACCAACAAG | + |
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Preference number: 4 (lower is better) Translates to: GSETVQEVTQPERLQWAGSEPQV*GRRTNK Trigger: CTTGTTGGTCCTCCTGCCTCAGACCTGGGGCTCAGA...CCCTGCCCACTGCAGCCTTTCGGGCTGTGTGACCTCCTGAACTGTCTCCGAGCC 63% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000003512.9 ENSMUST00000210642.2 |
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| CDS-3UTR TCA 90 bp | GGAGGACATCGGGCCCAGGCTCCCTCAGGAGGCTCGGAGACAGTTCAGGAGGTCAATCTAGGTCCACAGTaGGAGGCTGTGCCAGCCCCT | + |
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Preference number: 4 (lower is better) Translates to: GGHRAQAPSGGSETVQEVNLGPQ*EAVPAP Trigger: AGGGGCTGGCACAGCCTCTCACTGTGGACCTAGATT...GACCTCCTGAACTGTCTCCGAGCCTCCTGAGGGAGCCTGGGCCCGATGTCCTCC 63% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000003512.9 ENSMUST00000210642.2 |
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| CDS-3UTR CCA 90 bp | GGGCCCAGGCTCCCTCAGGAGGCTCGGAGACAGTTCAGGAGGTCACACAGCCCGTTGAGGTTCAGCTTCTaGGGGCAAGTTCCCACCAGG | + |
|
Preference number: 4 (lower is better) Translates to: GPRLPQEARRQFRRSHSPLRFSF*GQVPTR Trigger: CCTGGTGGGAACTTGCCCCCAGAAGCTGAACCTCAA...CGGGCTGTGTGACCTCCTGAACTGTCTCCGAGCCTCCTGAGGGAGCCTGGGCCC 63% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000003512.9 ENSMUST00000210642.2 |
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| CDS-3UTR TCA 90 bp | GGAGGCTCGGAGACAGTTCAGGAGGTCACACAGCCCGAAAGGCTGCAGTGGGCATCTGAGCCCCAGGTCTaGGGCAGGAGGACCAACAAG | + |
|
Preference number: 4 (lower is better) Translates to: GGSETVQEVTQPERLQWASEPQV*GRRTNK Trigger: CTTGTTGGTCCTCCTGCCTCAGACCTGGGGCTCAGA...TGCCCACTGCAGCCTTTCGGGCTGTGTGACCTCCTGAACTGTCTCCGAGCCTCC 62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000003512.9 ENSMUST00000210642.2 |
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| CDS-3UTR CCA 90 bp | AGCAGGCCACAAAAGCAGGGATCCATGGGAGGACATCGGGCCCAGGCTCCCTCAAGAAAGCCATGGGGCTaGCAGACCGCTGCGCATCCT | + |
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Preference number: 4 (lower is better) Translates to: SRPQKQGSMGGHRAQAPSRKPWG*QTAAHP Trigger: AGGATGCGCAGCGGTCTGCCAGCCCCATGGCTTTCT...TGAGGGAGCCTGGGCCCGATGTCCTCCCATGGATCCCTGCTTTTGTGGCCTGCT 62% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000003512.9 ENSMUST00000210642.2 |
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| CDS-3UTR CCA 90 bp | GGAGGACATCGGGCCCAGGCTCCCTCAGGAGGCTCGGAGACAGTTCAGGAGGTCTTGAGGTTCAGCTTCTaGGGGCAAGTTCCCACCAGG | + |
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Preference number: 4 (lower is better) Translates to: GGHRAQAPSGGSETVQEVLRFSF*GQVPTR Trigger: CCTGGTGGGAACTTGCCCCCAGAAGCTGAACCTCAA...GACCTCCTGAACTGTCTCCGAGCCTCCTGAGGGAGCCTGGGCCCGATGTCCTCC 62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000003512.9 ENSMUST00000210642.2 |
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| CDS-3UTR TCA 90 bp | ATCGGGCCCAGGCTCCCTCAGGAGGCTCGGAGACAGTTCAGGAGGTCACACAGCTTTGACCTCCAGCAATaGCCATGCGTGGAAAGAGCC | + |
|
Preference number: 4 (lower is better) Translates to: IGPRLPQEARRQFRRSHSFDLQQ*PCVERA Trigger: GGCTCTTTCCACGCATGGTCATTGCTGGAGGTCAAA...GCTGTGTGACCTCCTGAACTGTCTCCGAGCCTCCTGAGGGAGCCTGGGCCCGAT 60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000003512.9 ENSMUST00000210642.2 |
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| CDS-3UTR CCA 90 bp | GACATCGGGCCCAGGCTCCCTCAGGAGGCTCGGAGACAGTTCAGGAGGTCACACGAACTTGAGCTCCGGTaGGTAGAAGGAGAAAGCAGC | + |
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Preference number: 4 (lower is better) Translates to: DIGPRLPQEARRQFRRSHELELR*VEGESS Trigger: GCTGCTTTCTCCTTCTACCCACCGGAGCTCAAGTTC...GTGTGACCTCCTGAACTGTCTCCGAGCCTCCTGAGGGAGCCTGGGCCCGATGTC 60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000003512.9 ENSMUST00000210642.2 |
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| CDS-3UTR TCA 90 bp | GGAGGACATCGGGCCCAGGCTCCCTCAGGAGGCTCGGAGACAGTTCAGGAGGTCGCTGTTCTTTGCTTTTaGGGTCTGTGGTCTCCTTCT | + |
|
Preference number: 4 (lower is better) Translates to: GGHRAQAPSGGSETVQEVAVLCF*GLWSPS Trigger: AGAAGGAGACCACAGACCTCAAAAGCAAAGAACAGC...GACCTCCTGAACTGTCTCCGAGCCTCCTGAGGGAGCCTGGGCCCGATGTCCTCC 59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000003512.9 ENSMUST00000210642.2 |
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| CDS-3UTR GCA 90 bp | ACATCGGGCCCAGGCTCCCTCAGGAGGCTCGGAGACAGTTCAGGAGGTCACACAGGCTGGAAAGGCATTTaGACCTTGAGGTTCAGCTTC | + |
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Preference number: 4 (lower is better) Translates to: TSGPGSLRRLGDSSGGHTGWKGI*TLRFSF Trigger: GAAGCTGAACCTCAAGGTGCAAATGCCTTTCCAGCC...TGTGTGACCTCCTGAACTGTCTCCGAGCCTCCTGAGGGAGCCTGGGCCCGATGT 58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000003512.9 ENSMUST00000210642.2 |
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| CDS-3UTR CCA 90 bp | AGCAGGCCACAAAAGCAGGGATCCATGGGAGGACATCGGGCCCAGGCTCCCTCACAGGCACAGAAGATCTaGCTGATGAATCTAGGTCCA | + |
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Preference number: 4 (lower is better) Translates to: SRPQKQGSMGGHRAQAPSQAQKI*LMNLGP Trigger: TGGACCTAGATTCATCAGCCAGATCTTCTGTGCCTG...TGAGGGAGCCTGGGCCCGATGTCCTCCCATGGATCCCTGCTTTTGTGGCCTGCT 57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000003512.9 ENSMUST00000210642.2 |
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| CDS-3UTR CCA 90 bp | AAGCAGGCCACAAAAGCAGGGATCCATGGGAGGACATCGGGCCCAGGCTCCCTCCAGGCACAGAAGATCTaGCTGATGAATCTAGGTCCA | + |
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Preference number: 4 (lower is better) Translates to: KQATKAGIHGRTSGPGSLQAQKI*LMNLGP Trigger: TGGACCTAGATTCATCAGCCAGATCTTCTGTGCCTG...GAGGGAGCCTGGGCCCGATGTCCTCCCATGGATCCCTGCTTTTGTGGCCTGCTT 57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000003512.9 ENSMUST00000210642.2 |
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| CDS-3UTR CCA 90 bp | AAACAACCATGTACATTAAGAAGGGAAACTGAAGCAGGCCACAAAAGCAGGGATCGGCCCCTCTCCAGGTaGCCTAGCAGTCGCTCCGGA | + |
|
Preference number: 4 (lower is better) Translates to: KQPCTLRRETEAGHKSRDRPLSR*PSSRSG Trigger: TCCGGAGCGACTGCTAGGCCACCTGGAGAGGGGCCG...ATCCCTGCTTTTGTGGCCTGCTTCAGTTTCCCTTCTTAATGTACATGGTTGTTT 53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000003512.9 ENSMUST00000210642.2 |
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| CDS-3UTR CCA 90 bp | GGAGGCTCGGAGACAGTTCAGGAGGTCACACAGCCCGAAAGGCTGCAGTGGGCACCAATTGCCGATTCTTaGGTTGAATTTCATAAACTC | + |
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Preference number: 4 (lower is better) Translates to: GGSETVQEVTQPERLQWAPIADS*VEFHKL Trigger: GAGTTTATGAAATTCAACCCAAGAATCGGCAATTGG...TGCCCACTGCAGCCTTTCGGGCTGTGTGACCTCCTGAACTGTCTCCGAGCCTCC 52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000003512.9 ENSMUST00000210642.2 |
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| CDS-3UTR TCA 90 bp | AAACAACCATGTACATTAAGAAGGGAAACTGAAGCAGGCCACAAAAGCAGGGATCAGAGTCATCGCCGCTaGGAGAAAGCCATGGGGCTG | + |
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Preference number: 4 (lower is better) Translates to: KQPCTLRRETEAGHKSRDQSHRR*EKAMGL Trigger: CAGCCCCATGGCTTTCTCTCAGCGGCGATGACTCTG...ATCCCTGCTTTTGTGGCCTGCTTCAGTTTCCCTTCTTAATGTACATGGTTGTTT 50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000003512.9 ENSMUST00000210642.2 |
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| CDS-3UTR GCA 90 bp | TTGGGGCCAAATTTATGTGGAGATGGAAAACAACCATGTACATTAAGAAGGGAAGGGCTGGCAGACCGCTaGGCATCCTGCCCCACAACA | + |
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Preference number: 4 (lower is better) Translates to: LGPNLCGDGKQPCTLRREGLADR*ASCPTT Trigger: TGTTGTGGGGCAGGATGCGCAGCGGTCTGCCAGCCC...TTCCCTTCTTAATGTACATGGTTGTTTTCCATCTCCACATAAATTTGGCCCCAA 50% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 1 transcripts: ENSMUST00000003512.9 |
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| CDS-3UTR TCA 90 bp | GGGGCCAAATTTATGTGGAGATGGAAAACAACCATGTACATTAAGAAGGGAAACAATCTAGGTCCACAGTaGGAGGCTGTGCCAGCCCCT | + |
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Preference number: 4 (lower is better) Translates to: GAKFMWRWKTTMYIKKGNNLGPQ*EAVPAP Trigger: AGGGGCTGGCACAGCCTCTCACTGTGGACCTAGATT...GTTTCCCTTCTTAATGTACATGGTTGTTTTCCATCTCCACATAAATTTGGCCCC 48% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 2 transcripts: ENSMUST00000003512.9 ENSMUST00000210642.2 |
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| CDS-3UTR TCA 90 bp | AGATTTGGGGCCAAATTTATGTGGAGATGGAAAACAACCATGTACATTAAGAAGCAGAGTCATCGCCGCTaGGAGAAAGCCATGGGGCTG | + |
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Preference number: 4 (lower is better) Translates to: RFGAKFMWRWKTTMYIKKQSHRR*EKAMGL Trigger: CAGCCCCATGGCTTTCTCTCAGCGGCGATGACTCTG...CTTCTTAATGTACATGGTTGTTTTCCATCTCCACATAAATTTGGCCCCAAATCT 47% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 1 transcripts: ENSMUST00000003512.9 |
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| CDS-3UTR GCA 90 bp | GGGGCCAAATTTATGTGGAGATGGAAAACAACCATGTACATTAAGAAGGGAAACCTGGCCGCATCAGGCTaGTTCATCCACAGATTAGCA | + |
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Preference number: 4 (lower is better) Translates to: GAKFMWRWKTTMYIKKGNLAASG*FIHRLA Trigger: TGCTAATCTGTGGATGAAGCAGCCTGATGCGGCCAG...GTTTCCCTTCTTAATGTACATGGTTGTTTTCCATCTCCACATAAATTTGGCCCC 46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000003512.9 ENSMUST00000210642.2 |
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| CDS-3UTR CCA 90 bp | AATTTATGTGGAGATGGAAAACAACCATGTACATTAAGAAGGGAAACTGAAGCAAGAAAGCCATGGGGCTaGCAGACCGCTGCGCATCCT | + |
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Preference number: 4 (lower is better) Translates to: NLCGDGKQPCTLRRETEARKPWG*QTAAHP Trigger: AGGATGCGCAGCGGTCTGCCAGCCCCATGGCTTTCT...TGCTTCAGTTTCCCTTCTTAATGTACATGGTTGTTTTCCATCTCCACATAAATT 46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000003512.9 ENSMUST00000210642.2 |
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| CDS-3UTR TCA 90 bp | AAACAACCATGTACATTAAGAAGGGAAACTGAAGCAGGCCACAAAAGCAGGGATGCTGTTCTTTGCTTTTaGGGTCTGTGGTCTCCTTCT | + |
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Preference number: 4 (lower is better) Translates to: KQPCTLRRETEAGHKSRDAVLCF*GLWSPS Trigger: AGAAGGAGACCACAGACCTCAAAAGCAAAGAACAGC...ATCCCTGCTTTTGTGGCCTGCTTCAGTTTCCCTTCTTAATGTACATGGTTGTTT 44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000003512.9 ENSMUST00000210642.2 |
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| 3UTR CAA 72 bp | GATCTTTCCCAGACGCGTTCAATTTATTCCAGCTGCTaGAAACTTGAGAATAACGATGCACACACAGATTTG | + |
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Preference number: 4 (lower is better) Translates to: DLSQTRSIYSSC*KLENNDAHTDL Trigger: CAAATCTGTGTGTGCATCGTTATTCTCAAGTTTCAAGCAGCTGGAATAAATTGAACGCGTCTGGGAAAGATC 42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000003512.9 |
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| CDS-3UTR GCA 90 bp | AATTTATGTGGAGATGGAAAACAACCATGTACATTAAGAAGGGAAACTGAAGCAGGCTGGAAAGGCATTTaGACCTTGAGGTTCAGCTTC | + |
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Preference number: 4 (lower is better) Translates to: NLCGDGKQPCTLRRETEAGWKGI*TLRFSF Trigger: GAAGCTGAACCTCAAGGTGCAAATGCCTTTCCAGCC...TGCTTCAGTTTCCCTTCTTAATGTACATGGTTGTTTTCCATCTCCACATAAATT 41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000003512.9 ENSMUST00000210642.2 |
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| CDS-3UTR CCA 90 bp | GGAAAACAACCATGTACATTAAGAAGGGAAACTGAAGCAGGCCACAAAAGCAGGCCAATTGCCGATTCTTaGGTTGAATTTCATAAACTC | + |
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Preference number: 4 (lower is better) Translates to: GKQPCTLRRETEAGHKSRPIADS*VEFHKL Trigger: GAGTTTATGAAATTCAACCCAAGAATCGGCAATTGG...CCTGCTTTTGTGGCCTGCTTCAGTTTCCCTTCTTAATGTACATGGTTGTTTTCC 41% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000003512.9 ENSMUST00000210642.2 |
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| 3UTR CAA 72 bp | TGCTTGAAACTTGAGAATAACGATGCACACACAGATTaGGGGCCAAATTTATGTGGAGATGGAAAACAACCA | + |
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Preference number: 4 (lower is better) Translates to: CLKLENNDAHTD*GPNLCGDGKQP Trigger: TGGTTGTTTTCCATCTCCACATAAATTTGGCCCCAAATCTGTGTGTGCATCGTTATTCTCAAGTTTCAAGCA 40% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000003512.9 |
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| CDS CCA 90 bp | GACGGCGGCTCCTTCCACTCCAGGTTCCGTCGGCCCCTCTCCAGGTaGCCTAGCAGTCGCTCCGGACAAGAGTTTAGCAGGAACTCGCTC | + |
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Preference number: 5 (lower is better) Translates to: DGGSFHSRFRRPLSR*PSSRSGQEFSRNSL Trigger: GAGCGAGTTCCTGCTAAACTCTTGTCCGGAGCGACTGCTAGGCCACCTGGAGAGGGGCCGACGGAACCTGGAGTGGAAGGAGCCGCCGTC 64% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000003512.9 ENSMUST00000210642.2 |
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| CDS-3UTR CAA 90 bp | AGCAGGCCACAAAAGCAGGGATCCATGGGAGGACATCGGGCCCAGGCTCCCTCAACGGAGGAGCCAGAGTaGCCAGGACGGGCCTTCAGG | + |
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Preference number: 5 (lower is better) Translates to: SRPQKQGSMGGHRAQAPSTEEPE*PGRAFR Trigger: CCTGAAGGCCCGTCCTGGCAACTCTGGCTCCTCCGT...TGAGGGAGCCTGGGCCCGATGTCCTCCCATGGATCCCTGCTTTTGTGGCCTGCT 64% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000003512.9 ENSMUST00000210642.2 |
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| CDS-3UTR CAA 90 bp | GGAGGCTCGGAGACAGTTCAGGAGGTCACACAGCCCGAAAGGCTGCAGTGGGCAACGGAGGAGCCAGAGTaGCCAGGACGGGCCTTCAGG | + |
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Preference number: 5 (lower is better) Translates to: GGSETVQEVTQPERLQWATEEPE*PGRAFR Trigger: CCTGAAGGCCCGTCCTGGCAACTCTGGCTCCTCCGT...TGCCCACTGCAGCCTTTCGGGCTGTGTGACCTCCTGAACTGTCTCCGAGCCTCC 64% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000003512.9 ENSMUST00000210642.2 |
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| CDS TCA 90 bp | CCGCAGGCTGTTGTAGGTCAGATACTGCTGAGGACCCAACCAGCCTaGGCCCCAGGTCTGAGGCAGGAGGACCAACAAGAGGCTGAGGGC | + |
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Preference number: 5 (lower is better) Translates to: PQAVVGQILLRTQPA*APGLRQEDQQEAEG Trigger: GCCCTCAGCCTCTTGTTGGTCCTCCTGCCTCAGACCTGGGGCTCAGGCTGGTTGGGTCCTCAGCAGTATCTGACCTACAACAGCCTGCGG 62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000211085.2 |
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| CDS TCA 90 bp | AATTCCCGGAGCCTGAGGCTAGCCCATTGCGCAGGAATCGGAACTTaGGCTCCGGTGGGTAGAAGGAGAAAGCAGCACAGGTCAGCACGG | + |
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Preference number: 5 (lower is better) Translates to: NSRSLRLAHCAGIGT*APVGRRRKQHRSAR Trigger: CCGTGCTGACCTGTGCTGCTTTCTCCTTCTACCCACCGGAGCTCAAGTTCCGATTCCTGCGCAATGGGCTAGCCTCAGGCTCCGGGAATT 59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000003512.9 ENSMUST00000210642.2 |
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| CDS-3UTR CAA 90 bp | GGCTCGGAGACAGTTCAGGAGGTCACACAGCCCGAAAGGCTGCAGTGGGCAGGGTGGCTGGAAAGGCATTaGCACCTTGAGGTTCAGCTT | + |
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Preference number: 5 (lower is better) Translates to: GSETVQEVTQPERLQWAGWLERH*HLEVQL Trigger: AAGCTGAACCTCAAGGTGCAAATGCCTTTCCAGCCA...CCCTGCCCACTGCAGCCTTTCGGGCTGTGTGACCTCCTGAACTGTCTCCGAGCC 59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000003512.9 ENSMUST00000210642.2 |
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| CDS-3UTR CAA 90 bp | AAGCAGGCCACAAAAGCAGGGATCCATGGGAGGACATCGGGCCCAGGCTCCCTCAGCTGTTCTTTGCTTTaGAGGTCTGTGGTCTCCTTC | + |
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Preference number: 5 (lower is better) Translates to: KQATKAGIHGRTSGPGSLSCSLL*RSVVSF Trigger: GAAGGAGACCACAGACCTCAAAAGCAAAGAACAGCT...GAGGGAGCCTGGGCCCGATGTCCTCCCATGGATCCCTGCTTTTGTGGCCTGCTT 57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000003512.9 ENSMUST00000210642.2 |
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| CDS TCA 90 bp | TTTCATAAACTCCTCACCATTGAGGGCAAACACAGCCGTGGGCACTaGGGAATTATCCGAGGCCAGTTCACAGCCCAGCAGGCCCTGCAG | + |
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Preference number: 5 (lower is better) Translates to: FHKLLTIEGKHSRGH*GIIRGQFTAQQALQ Trigger: CTGCAGGGCCTGCTGGGCTGTGAACTGGCCTCGGATAATTCCTCAGTGCCCACGGCTGTGTTTGCCCTCAATGGTGAGGAGTTTATGAAA 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000003512.9 ENSMUST00000210642.2 ENSMUST00000211085.2 |
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| CDS-3UTR CAA 90 bp | GGAGGCTCGGAGACAGTTCAGGAGGTCACACAGCCCGAAAGGCTGCAGTGGGCAAAGAAGAGCTGTTCTTaGCTTTTGAGGTCTGTGGTC | + |
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Preference number: 5 (lower is better) Translates to: GGSETVQEVTQPERLQWAKKSCS*LLRSVV Trigger: GACCACAGACCTCAAAAGCAAAGAACAGCTCTTCTT...TGCCCACTGCAGCCTTTCGGGCTGTGTGACCTCCTGAACTGTCTCCGAGCCTCC 56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000003512.9 ENSMUST00000210642.2 |
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| CDS-3UTR CAA 90 bp | ATCGGGCCCAGGCTCCCTCAGGAGGCTCGGAGACAGTTCAGGAGGTCACACAGCTTGCCGATTCTTGGGTaGAATTTCATAAACTCCTCA | + |
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Preference number: 5 (lower is better) Translates to: IGPRLPQEARRQFRRSHSLPILG*NFINSS Trigger: TGAGGAGTTTATGAAATTCAACCCAAGAATCGGCAA...GCTGTGTGACCTCCTGAACTGTCTCCGAGCCTCCTGAGGGAGCCTGGGCCCGAT 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000003512.9 ENSMUST00000210642.2 |
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| CDS TCA 90 bp | CAACCACAGGCACAGAAGATCTGGCTGATGAATCTAGGTCCACAGTaGGAGGCTGTGCCAGCCCCTCATGCTCCACTTGACATTGATAAT | + |
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Preference number: 5 (lower is better) Translates to: QPQAQKIWLMNLGPQ*EAVPAPHAPLDIDN Trigger: ATTATCAATGTCAAGTGGAGCATGAGGGGCTGGCACAGCCTCTCACTGTGGACCTAGATTCATCAGCCAGATCTTCTGTGCCTGTGGTTG 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000003512.9 ENSMUST00000210642.2 |
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| CDS TCA 90 bp | TTGACATTGATAATGGTGCTCATCTCCACGTTTGACCTCCAGCAATaGCCATGCGTGGAAAGAGCCATCTCCATTGGGACCAGTGCTGCA | + |
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Preference number: 5 (lower is better) Translates to: LTLIMVLISTFDLQQ*PCVERAISIGTSAA Trigger: TGCAGCACTGGTCCCAATGGAGATGGCTCTTTCCACGCATGGTCATTGCTGGAGGTCAAACGTGGAGATGAGCACCATTATCAATGTCAA 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000003512.9 ENSMUST00000210642.2 |
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| CDS-3UTR CAA 90 bp | AAACAACCATGTACATTAAGAAGGGAAACTGAAGCAGGCCACAAAAGCAGGGATATAAACTCCTCACCATaGAGGGCAAACACAGCCGTG | + |
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Preference number: 5 (lower is better) Translates to: KQPCTLRRETEAGHKSRDINSSP*RANTAV Trigger: CACGGCTGTGTTTGCCCTCAATGGTGAGGAGTTTAT...ATCCCTGCTTTTGTGGCCTGCTTCAGTTTCCCTTCTTAATGTACATGGTTGTTT 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000003512.9 ENSMUST00000210642.2 |
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| CDS-3UTR CAA 90 bp | GGAAAACAACCATGTACATTAAGAAGGGAAACTGAAGCAGGCCACAAAAGCAGGTTGCCGATTCTTGGGTaGAATTTCATAAACTCCTCA | + |
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Preference number: 5 (lower is better) Translates to: GKQPCTLRRETEAGHKSRLPILG*NFINSS Trigger: TGAGGAGTTTATGAAATTCAACCCAAGAATCGGCAA...CCTGCTTTTGTGGCCTGCTTCAGTTTCCCTTCTTAATGTACATGGTTGTTTTCC 42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000003512.9 ENSMUST00000210642.2 |
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| CDS-3UTR CAA 90 bp | AGATTTGGGGCCAAATTTATGTGGAGATGGAAAACAACCATGTACATTAAGAAGAGCTGTTCTTTGCTTTaGAGGTCTGTGGTCTCCTTC | + |
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Preference number: 5 (lower is better) Translates to: RFGAKFMWRWKTTMYIKKSCSLL*RSVVSF Trigger: GAAGGAGACCACAGACCTCAAAAGCAAAGAACAGCT...CTTCTTAATGTACATGGTTGTTTTCCATCTCCACATAAATTTGGCCCCAAATCT 41% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000003512.9 |
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| CDS-3UTR CAA 90 bp | GATTTGGGGCCAAATTTATGTGGAGATGGAAAACAACCATGTACATTAAGAAGGAAGAAGAGCTGTTCTTaGCTTTTGAGGTCTGTGGTC | + |
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Preference number: 5 (lower is better) Translates to: DLGPNLCGDGKQPCTLRRKKSCS*LLRSVV Trigger: GACCACAGACCTCAAAAGCAAAGAACAGCTCTTCTT...CCTTCTTAATGTACATGGTTGTTTTCCATCTCCACATAAATTTGGCCCCAAATC 41% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 1 transcripts: ENSMUST00000003512.9 |
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| CDS-3UTR CAA 90 bp | AATTTATGTGGAGATGGAAAACAACCATGTACATTAAGAAGGGAAACTGAAGCATGGCTGGAAAGGCATTaGCACCTTGAGGTTCAGCTT | + |
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Preference number: 5 (lower is better) Translates to: NLCGDGKQPCTLRRETEAWLERH*HLEVQL Trigger: AAGCTGAACCTCAAGGTGCAAATGCCTTTCCAGCCA...TGCTTCAGTTTCCCTTCTTAATGTACATGGTTGTTTTCCATCTCCACATAAATT 41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000003512.9 ENSMUST00000210642.2 |
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| CDS CCA 72 bp | TCCTTCCACTCCAGGTTCCGTCGGCCCCTCTCCAGGTaGCCTAGCAGTCGCTCCGGACAAGAGTTTAGCAGG | + |
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Preference number: 6 (lower is better) Translates to: SFHSRFRRPLSR*PSSRSGQEFSR Trigger: CCTGCTAAACTCTTGTCCGGAGCGACTGCTAGGCCACCTGGAGAGGGGCCGACGGAACCTGGAGTGGAAGGA 62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000003512.9 ENSMUST00000210642.2 |
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| CDS TCA 72 bp | CTCCTCACCATTGAGGGCAAACACAGCCGTGGGCACTaGGGAATTATCCGAGGCCAGTTCACAGCCCAGCAG | + |
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Preference number: 6 (lower is better) Translates to: LLTIEGKHSRGH*GIIRGQFTAQQ Trigger: CTGCTGGGCTGTGAACTGGCCTCGGATAATTCCTCAGTGCCCACGGCTGTGTTTGCCCTCAATGGTGAGGAG 58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000003512.9 ENSMUST00000210642.2 ENSMUST00000211085.2 |
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| CDS TCA 72 bp | AGCCTGAGGCTAGCCCATTGCGCAGGAATCGGAACTTaGGCTCCGGTGGGTAGAAGGAGAAAGCAGCACAGG | + |
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Preference number: 6 (lower is better) Translates to: SLRLAHCAGIGT*APVGRRRKQHR Trigger: CCTGTGCTGCTTTCTCCTTCTACCCACCGGAGCTCAAGTTCCGATTCCTGCGCAATGGGCTAGCCTCAGGCT 58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000003512.9 ENSMUST00000210642.2 |
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| CDS CCA 72 bp | TGCGCATCCTGCCCCACAACAGCACACCGCCTGCGATaGCCACTACCACCAGCAATAAACCAAGAACGATTC | + |
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Preference number: 6 (lower is better) Translates to: CASCPTTAHRLR*PLPPAINQERF Trigger: GAATCGTTCTTGGTTTATTGCTGGTGGTAGTGGCCATCGCAGGCGGTGTGCTGTTGTGGGGCAGGATGCGCA 57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000003512.9 ENSMUST00000210642.2 |
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| CDS CCA 72 bp | GGCTGGAAAGGCATTTGCACCTTGAGGTTCAGCTTCTaGGGGCAAGTTCCCACCAGGCAACAGGTCACCAGA | + |
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Preference number: 6 (lower is better) Translates to: GWKGICTLRFSF*GQVPTRQQVTR Trigger: TCTGGTGACCTGTTGCCTGGTGGGAACTTGCCCCCAGAAGCTGAACCTCAAGGTGCAAATGCCTTTCCAGCC 57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000003512.9 ENSMUST00000210642.2 |
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| CDS TCA 72 bp | GCACAGAAGATCTGGCTGATGAATCTAGGTCCACAGTaGGAGGCTGTGCCAGCCCCTCATGCTCCACTTGAC | + |
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Preference number: 6 (lower is better) Translates to: AQKIWLMNLGPQ*EAVPAPHAPLD Trigger: GTCAAGTGGAGCATGAGGGGCTGGCACAGCCTCTCACTGTGGACCTAGATTCATCAGCCAGATCTTCTGTGC 56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000003512.9 ENSMUST00000210642.2 |
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| CDS CAA 72 bp | GCAACGATTTCCGTCTCAGGCCACTCCCCAGTCCAATaGCCGATTCTTGGGTTGAATTTCATAAACTCCTCA | + |
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Preference number: 6 (lower is better) Translates to: ATISVSGHSPVQ*PILGLNFINSS Trigger: TGAGGAGTTTATGAAATTCAACCCAAGAATCGGCAATTGGACTGGGGAGTGGCCTGAGACGGAAATCGTTGC 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000003512.9 ENSMUST00000210642.2 ENSMUST00000211085.2 |
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| CDS CAA 72 bp | CCGATTCTTGGGTTGAATTTCATAAACTCCTCACCATaGAGGGCAAACACAGCCGTGGGCACTGAGGAATTA | + |
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Preference number: 6 (lower is better) Translates to: PILGLNFINSSP*RANTAVGTEEL Trigger: TAATTCCTCAGTGCCCACGGCTGTGTTTGCCCTCAATGGTGAGGAGTTTATGAAATTCAACCCAAGAATCGG 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000003512.9 ENSMUST00000210642.2 ENSMUST00000211085.2 |
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