Pregenerated sensors for FCAMR (Mus musculus)
Ensembl gene IDs: ENSMUSG00000026415Ensembl transcript IDs: ENSMUST00000027670.4, ENSMUST00000112477.9
Found 65 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| CDS TCA 90 bp | GGCTGGGGACCTGCAGCCAAAGACAAGAGGCCAGAGGGAGGCTTGTaGGAAGCTGGAGAGAGTGGTCGGGAGTCCAGGGCTCGGCACTCT | + |
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Preference number: 5 (lower is better) Translates to: GWGPAAKDKRPEGGL*EAGESGRESRARHS Trigger: AGAGTGCCGAGCCCTGGACTCCCGACCACTCTCTCCAGCTTCTCACAAGCCTCCCTCTGGCCTCTTGTCTTTGGCTGCAGGTCCCCAGCC 63% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000112477.9 |
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| CDS GCA 90 bp | GGTCGGGAGTCCAGGGCTCGGCACTCTGGCTGTGCATTCTCAGTTTaGTCCAGTAGCTGGGTAGCTCTACCCGAAAGGCAGGGCCAGGGA | + |
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Preference number: 5 (lower is better) Translates to: GRESRARHSGCAFSV*SSSWVALPERQGQG Trigger: TCCCTGGCCCTGCCTTTCGGGTAGAGCTACCCAGCTACTGGAGCAAACTGAGAATGCACAGCCAGAGTGCCGAGCCCTGGACTCCCGACC 62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000112477.9 |
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| CDS CCA 90 bp | ACCTGCAGCCAAAGACAAGAGGCCAGAGGGAGGCTTGTGAGAAGCTaGAGAGAGTGGTCGGGAGTCCAGGGCTCGGCACTCTGGCTGTGC | + |
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Preference number: 5 (lower is better) Translates to: TCSQRQEARGRLVRS*REWSGVQGSALWLC Trigger: GCACAGCCAGAGTGCCGAGCCCTGGACTCCCGACCACTCTCTCCAGCTTCTCACAAGCCTCCCTCTGGCCTCTTGTCTTTGGCTGCAGGT 62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000112477.9 |
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| CDS CCA 90 bp | ACCCAGGGACAGTCGGAGCAGCCTCACCACAAACAAACCGCTCTGTaGAATGTCAGTGAGAGCCGCGCGCCCACGGTAGTCAGGGTGAGT | + |
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Preference number: 5 (lower is better) Translates to: TQGQSEQPHHKQTAL*NVSESRAPTVVRVS Trigger: ACTCACCCTGACTACCGTGGGCGCGCGGCTCTCACTGACATTCCACAGAGCGGTTTGTTTGTGGTGAGGCTGCTCCGACTGTCCCTGGGT 61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000027670.4 ENSMUST00000112477.9 |
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| CDS CCA 90 bp | AGGTCCATCCGTTGCCTGCTGAGGATGCTGCTCCAGGAGATGCTGTaGTGGGCTCACCGGAAGCTGGTGCTGCTGCATAGGTGGTGTTGG | + |
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Preference number: 5 (lower is better) Translates to: RSIRCLLRMLLQEML*WAHRKLVLLHRWCW Trigger: CCAACACCACCTATGCAGCAGCACCAGCTTCCGGTGAGCCCACCACAGCATCTCCTGGAGCAGCATCCTCAGCAGGCAACGGATGGACCT 61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000027670.4 ENSMUST00000112477.9 |
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| CDS TCA 90 bp | GTCGGAGCAGCCTCACCACAAACAAACCGCTCTGTGGAATGTCAGTaGGAGCCGCGCGCCCACGGTAGTCAGGGTGAGTGTATTGGTTGG | + |
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Preference number: 5 (lower is better) Translates to: VGAASPQTNRSVECQ*EPRAHGSQGECIGW Trigger: CCAACCAATACACTCACCCTGACTACCGTGGGCGCGCGGCTCTCACTGACATTCCACAGAGCGGTTTGTTTGTGGTGAGGCTGCTCCGAC 59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000027670.4 ENSMUST00000112477.9 |
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| CDS TCA 90 bp | GGGGCGTGGGAGCTGTGTGTGCTTCCACATTGTAGAGATGGGTCCTaGACTGAGGAGAGCCAGCCTGCAGCCATCTGGAATGTGACCTTC | + |
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Preference number: 5 (lower is better) Translates to: GAWELCVLPHCRDGS*TEESQPAAIWNVTF Trigger: GAAGGTCACATTCCAGATGGCTGCAGGCTGGCTCTCCTCAGTTCAGGACCCATCTCTACAATGTGGAAGCACACACAGCTCCCACGCCCC 58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000027670.4 ENSMUST00000112477.9 |
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| CDS TCA 90 bp | AGTGTTCCCAGTCACCAGTCGCGGGCCTCTCAATGCATTTGTACCTaGAAGGGAGTTCTTCCAGCAGCAAAGGGGCGTGGGAGCTGTGTG | + |
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Preference number: 5 (lower is better) Translates to: SVPSHQSRASQCICT*KGVLPAAKGRGSCV Trigger: CACACAGCTCCCACGCCCCTTTGCTGCTGGAAGAACTCCCTTTCAGGTACAAATGCATTGAGAGGCCCGCGACTGGTGACTGGGAACACT 57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000027670.4 ENSMUST00000112477.9 |
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| CDS TCA 90 bp | GGTGCTCCACAGCCAAACACCCTGTGTTGTGCTGGACATGCTTCTTaGTTTTGGAGACGGACCCTCTGGAGTGGGGACTGCTGCCCTGAT | + |
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Preference number: 5 (lower is better) Translates to: GAPQPNTLCCAGHAS*FWRRTLWSGDCCPD Trigger: ATCAGGGCAGCAGTCCCCACTCCAGAGGGTCCGTCTCCAAAATCAAGAAGCATGTCCAGCACAACACAGGGTGTTTGGCTGTGGAGCACC 57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000027670.4 ENSMUST00000112477.9 |
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| CDS CCA 90 bp | TGGAGACACCCTGACGTCTGTTTCATCTCGTGGCCCATCAGTCTCTaGGGTTGTGCCTTGCCTCCTTCCTTCACTCGTGGTAACACTGGG | + |
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Preference number: 5 (lower is better) Translates to: WRHPDVCFISWPISL*GCALPPSFTRGNTG Trigger: CCCAGTGTTACCACGAGTGAAGGAAGGAGGCAAGGCACAACCCCAGAGACTGATGGGCCACGAGATGAAACAGACGTCAGGGTGTCTCCA 57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000027670.4 ENSMUST00000112477.9 |
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| CDS TCA 90 bp | TGTGCCTTGCCTCCTTCCTTCACTCGTGGTAACACTGGGTGTTACTaGGTTCCTGGTGCTCCACAGCCAAACACCCTGTGTTGTGCTGGA | + |
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Preference number: 5 (lower is better) Translates to: CALPPSFTRGNTGCY*VPGAPQPNTLCCAG Trigger: TCCAGCACAACACAGGGTGTTTGGCTGTGGAGCACCAGGAACTCAGTAACACCCAGTGTTACCACGAGTGAAGGAAGGAGGCAAGGCACA 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000027670.4 ENSMUST00000112477.9 |
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| CDS TCA 90 bp | AGACACCTCTGTTTTGTCTTGGAGAGTTTCCCAGGTCACATGTTCTaGGATCAGGGCCGATGGCCTCGTGGTTCCTGTGGTCTTCCTGGG | + |
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Preference number: 5 (lower is better) Translates to: RHLCFVLESFPGHMF*DQGRWPRGSCGLPG Trigger: CCCAGGAAGACCACAGGAACCACGAGGCCATCGGCCCTGATCTCAGAACATGTGACCTGGGAAACTCTCCAAGACAAAACAGAGGTGTCT 54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000027670.4 ENSMUST00000112477.9 |
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| CDS TCA 90 bp | TGTGGCTTTCTCCTTCCATCAGAGCACTCTTCATGGATGGCCCCTTaGCAGAAACCCACACAGGGCCTGCTACTGAAAGCTGGCTTGGTG | + |
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Preference number: 5 (lower is better) Translates to: CGFLLPSEHSSWMAP*QKPTQGLLLKAGLV Trigger: CACCAAGCCAGCTTTCAGTAGCAGGCCCTGTGTGGGTTTCTGTCAAGGGGCCATCCATGAAGAGTGCTCTGATGGAAGGAGAAAGCCACA 54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000027670.4 ENSMUST00000112477.9 |
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| CDS GCA 90 bp | AGTGTGAGAAGAAGTATTTCCCATCTCGTTCTCAGGCTGGGGACCTaGAGCCAAAGACAAGAGGCCAGAGGGAGGCTTGTGAGAAGCTGG | + |
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Preference number: 5 (lower is better) Translates to: SVRRSISHLVLRLGT*SQRQEARGRLVRSW Trigger: CCAGCTTCTCACAAGCCTCCCTCTGGCCTCTTGTCTTTGGCTGCAGGTCCCCAGCCTGAGAACGAGATGGGAAATACTTCTTCTCACACT 54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000112477.9 |
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| CDS CCA 90 bp | TTACTGAGTTCCTGGTGCTCCACAGCCAAACACCCTGTGTTGTGCTaGACATGCTTCTTGATTTTGGAGACGGACCCTCTGGAGTGGGGA | + |
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Preference number: 5 (lower is better) Translates to: LLSSWCSTAKHPVLC*TCFLILETDPLEWG Trigger: TCCCCACTCCAGAGGGTCCGTCTCCAAAATCAAGAAGCATGTCCAGCACAACACAGGGTGTTTGGCTGTGGAGCACCAGGAACTCAGTAA 53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000027670.4 ENSMUST00000112477.9 |
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| CDS TCA 90 bp | TTCTGTGTGGAGGGGTCATGGATGAACCATGGAGCAGACAGAGTGTaGGAAGAAGTATTTCCCATCTCGTTCTCAGGCTGGGGACCTGCA | + |
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Preference number: 5 (lower is better) Translates to: FCVEGSWMNHGADRV*EEVFPISFSGWGPA Trigger: TGCAGGTCCCCAGCCTGAGAACGAGATGGGAAATACTTCTTCTCACACTCTGTCTGCTCCATGGTTCATCCATGACCCCTCCACACAGAA 52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000112477.9 |
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| CDS CCA 90 bp | GTGAGTGTATTGGTTGGTGGACACGACAGTGTGACAGATCCACAATaGAGACCCCAGGCGGCACCAGTATTTTCTTTGATGCCTGTTGAC | + |
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Preference number: 5 (lower is better) Translates to: VSVLVGGHDSVTDPQ*RPQAAPVFSLMPVD Trigger: GTCAACAGGCATCAAAGAAAATACTGGTGCCGCCTGGGGTCTCCATTGTGGATCTGTCACACTGTCGTGTCCACCAACCAATACACTCAC 51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000027670.4 ENSMUST00000112477.9 |
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| CDS TCA 90 bp | TTCTGTGTGGAGGGGTCATGGATGAACCATGGAGCAGACAGAGTGTaGGAAGAAGTATTTCCCATCTCGTTCTCAGGCTGGGGACCTTTT | + |
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Preference number: 5 (lower is better) Translates to: FCVEGSWMNHGADRV*EEVFPISFSGWGPF Trigger: AAAAGGTCCCCAGCCTGAGAACGAGATGGGAAATACTTCTTCTCACACTCTGTCTGCTCCATGGTTCATCCATGACCCCTCCACACAGAA 50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000027670.4 |
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| CDS TCA 90 bp | TCCAGGACGGTCAGGCTGGCTTGGGGAGGAAGAAGGTTACTCTGTTaGAAGTTCTTTCCCTCATCAGGGAGCTTATCTGGTAGGAAATGT | + |
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Preference number: 5 (lower is better) Translates to: SRTVRLAWGGRRLLC*KFFPSSGSLSGRKC Trigger: ACATTTCCTACCAGATAAGCTCCCTGATGAGGGAAAGAACTTTCAACAGAGTAACCTTCTTCCTCCCCAAGCCAGCCTGACCGTCCTGGA 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000027670.4 ENSMUST00000112477.9 |
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| CDS GCA 90 bp | TTTAAGGTCTGTGCACTTGGAGCTGGTGATAACTCCTCCAGGGAGTaGAGCATTTGTTGCTTAGACACCTCTGTTTTGTCTTGGAGAGTT | + |
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Preference number: 5 (lower is better) Translates to: FKVCALGAGDNSSRE*SICCLDTSVLSWRV Trigger: AACTCTCCAAGACAAAACAGAGGTGTCTAAGCAACAAATGCTGCACTCCCTGGAGGAGTTATCACCAGCTCCAAGTGCACAGACCTTAAA 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000027670.4 ENSMUST00000112477.9 |
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| CDS TCA 90 bp | CATCAGGGAGCTTATCTGGTAGGAAATGTGTCATCTGAATTAGAGTaGTCCTGGGTACCCTTTCTTTCTTCTGAGATGTCCTCTGTCTGC | + |
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Preference number: 5 (lower is better) Translates to: HQGAYLVGNVSSELE*SWVPFLSSEMSSVC Trigger: GCAGACAGAGGACATCTCAGAAGAAAGAAAGGGTACCCAGGATCACTCTAATTCAGATGACACATTTCCTACCAGATAAGCTCCCTGATG 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000027670.4 ENSMUST00000112477.9 |
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| CDS CCA 72 bp | TGCCTGCTGAGGATGCTGCTCCAGGAGATGCTGTGGTaGGCTCACCGGAAGCTGGTGCTGCTGCATAGGTGG | + |
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Preference number: 6 (lower is better) Translates to: CLLRMLLQEMLW*AHRKLVLLHRW Trigger: CCACCTATGCAGCAGCACCAGCTTCCGGTGAGCCCACCACAGCATCTCCTGGAGCAGCATCCTCAGCAGGCA 62% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000027670.4 ENSMUST00000112477.9 |
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| CDS CCA 72 bp | CGTTGCCTGCTGAGGATGCTGCTCCAGGAGATGCTGTaGTGGGCTCACCGGAAGCTGGTGCTGCTGCATAGG | + |
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Preference number: 6 (lower is better) Translates to: RCLLRMLLQEML*WAHRKLVLLHR Trigger: CCTATGCAGCAGCACCAGCTTCCGGTGAGCCCACCACAGCATCTCCTGGAGCAGCATCCTCAGCAGGCAACG 62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000027670.4 ENSMUST00000112477.9 |
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| CDS TCA 72 bp | CCTGCAGCCAAAGACAAGAGGCCAGAGGGAGGCTTGTaGGAAGCTGGAGAGAGTGGTCGGGAGTCCAGGGCT | + |
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Preference number: 6 (lower is better) Translates to: PAAKDKRPEGGL*EAGESGRESRA Trigger: AGCCCTGGACTCCCGACCACTCTCTCCAGCTTCTCACAAGCCTCCCTCTGGCCTCTTGTCTTTGGCTGCAGG 61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000112477.9 |
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| CDS CCA 72 bp | CAGTCGGAGCAGCCTCACCACAAACAAACCGCTCTGTaGAATGTCAGTGAGAGCCGCGCGCCCACGGTAGTC | + |
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Preference number: 6 (lower is better) Translates to: QSEQPHHKQTAL*NVSESRAPTVV Trigger: GACTACCGTGGGCGCGCGGCTCTCACTGACATTCCACAGAGCGGTTTGTTTGTGGTGAGGCTGCTCCGACTG 61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000027670.4 ENSMUST00000112477.9 |
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| CDS CAA 90 bp | GAGCCTGAGCCTTCTAGGATCTGGGTGATGCCTGAGGTCCATCCGTaGCCTGCTGAGGATGCTGCTCCAGGAGATGCTGTGGTGGGCTCA | + |
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Preference number: 6 (lower is better) Translates to: EPEPSRIWVMPEVHP*PAEDAAPGDAVVGS Trigger: TGAGCCCACCACAGCATCTCCTGGAGCAGCATCCTCAGCAGGCAACGGATGGACCTCAGGCATCACCCAGATCCTAGAAGGCTCAGGCTC 60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000027670.4 ENSMUST00000112477.9 |
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| CDS TCA 72 bp | GCCTCACCACAAACAAACCGCTCTGTGGAATGTCAGTaGGAGCCGCGCGCCCACGGTAGTCAGGGTGAGTGT | + |
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Preference number: 6 (lower is better) Translates to: ASPQTNRSVECQ*EPRAHGSQGEC Trigger: ACACTCACCCTGACTACCGTGGGCGCGCGGCTCTCACTGACATTCCACAGAGCGGTTTGTTTGTGGTGAGGC 60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000027670.4 ENSMUST00000112477.9 |
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| CDS CCA 72 bp | TGGCCTCGTGGTTCCTGTGGTCTTCCTGGGTGCTTCTaGAGACACCCTGACGTCTGTTTCATCTCGTGGCCC | + |
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Preference number: 6 (lower is better) Translates to: WPRGSCGLPGCF*RHPDVCFISWP Trigger: GGGCCACGAGATGAAACAGACGTCAGGGTGTCTCCAGAAGCACCCAGGAAGACCACAGGAACCACGAGGCCA 60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000027670.4 ENSMUST00000112477.9 |
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| CDS CAA 90 bp | CTCCCCCAGTGTTCCCAGTCACCAGTCGCGGGCCTCTCAATGCATTaGTACCTGAAAGGGAGTTCTTCCAGCAGCAAAGGGGCGTGGGAG | + |
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Preference number: 6 (lower is better) Translates to: LPQCSQSPVAGLSMH*YLKGSSSSSKGAWE Trigger: CTCCCACGCCCCTTTGCTGCTGGAAGAACTCCCTTTCAGGTACAAATGCATTGAGAGGCCCGCGACTGGTGACTGGGAACACTGGGGGAG 59% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENSMUST00000027670.4 ENSMUST00000112477.9 |
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| CDS GCA 72 bp | AGATGCTGTGGTGGGCTCACCGGAAGCTGGTGCTGCTaGATAGGTGGTGTTGGATGGACCTGCAGACACAGT | + |
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Preference number: 6 (lower is better) Translates to: RCCGGLTGSWCC*IGGVGWTCRHS Trigger: ACTGTGTCTGCAGGTCCATCCAACACCACCTATGCAGCAGCACCAGCTTCCGGTGAGCCCACCACAGCATCT 58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000027670.4 ENSMUST00000112477.9 |
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| CDS GCA 72 bp | CTGGGTAGCTCTACCCGAAAGGCAGGGCCAGGGAACTaGGTGTCCTGGCAAGTGAGGTGCTTTTGTTCACTG | + |
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Preference number: 6 (lower is better) Translates to: LGSSTRKAGPGN*VSWQVRCFCSL Trigger: CAGTGAACAAAAGCACCTCACTTGCCAGGACACGCAGTTCCCTGGCCCTGCCTTTCGGGTAGAGCTACCCAG 58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000112477.9 |
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| CDS GCA 72 bp | TCCAGGGCTCGGCACTCTGGCTGTGCATTCTCAGTTTaGTCCAGTAGCTGGGTAGCTCTACCCGAAAGGCAG | + |
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Preference number: 6 (lower is better) Translates to: SRARHSGCAFSV*SSSWVALPERQ Trigger: CTGCCTTTCGGGTAGAGCTACCCAGCTACTGGAGCAAACTGAGAATGCACAGCCAGAGTGCCGAGCCCTGGA 58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000112477.9 |
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| CDS CAA 72 bp | CCTTCTAGGATCTGGGTGATGCCTGAGGTCCATCCGTaGCCTGCTGAGGATGCTGCTCCAGGAGATGCTGTG | + |
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Preference number: 6 (lower is better) Translates to: PSRIWVMPEVHP*PAEDAAPGDAV Trigger: CACAGCATCTCCTGGAGCAGCATCCTCAGCAGGCAACGGATGGACCTCAGGCATCACCCAGATCCTAGAAGG 58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000027670.4 ENSMUST00000112477.9 |
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| CDS TCA 72 bp | AGTCACCAGTCGCGGGCCTCTCAATGCATTTGTACCTaGAAGGGAGTTCTTCCAGCAGCAAAGGGGCGTGGG | + |
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Preference number: 6 (lower is better) Translates to: SHQSRASQCICT*KGVLPAAKGRG Trigger: CCCACGCCCCTTTGCTGCTGGAAGAACTCCCTTTCAGGTACAAATGCATTGAGAGGCCCGCGACTGGTGACT 57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000027670.4 ENSMUST00000112477.9 |
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| CDS CCA 72 bp | TGGTGGGCTCACCGGAAGCTGGTGCTGCTGCATAGGTaGTGTTGGATGGACCTGCAGACACAGTCAGATTCA | + |
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Preference number: 6 (lower is better) Translates to: WWAHRKLVLLHR*CWMDLQTQSDS Trigger: TGAATCTGACTGTGTCTGCAGGTCCATCCAACACCACCTATGCAGCAGCACCAGCTTCCGGTGAGCCCACCA 57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000027670.4 ENSMUST00000112477.9 |
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| CDS CCA 72 bp | CCTGACGTCTGTTTCATCTCGTGGCCCATCAGTCTCTaGGGTTGTGCCTTGCCTCCTTCCTTCACTCGTGGT | + |
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Preference number: 6 (lower is better) Translates to: PDVCFISWPISL*GCALPPSFTRG Trigger: ACCACGAGTGAAGGAAGGAGGCAAGGCACAACCCCAGAGACTGATGGGCCACGAGATGAAACAGACGTCAGG 57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000027670.4 ENSMUST00000112477.9 |
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| CDS CCA 72 bp | TCTACCCGAAAGGCAGGGCCAGGGAACTGCGTGTCCTaGCAAGTGAGGTGCTTTTGTTCACTGGGCTTAGCT | + |
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Preference number: 6 (lower is better) Translates to: STRKAGPGNCVS*QVRCFCSLGLA Trigger: AGCTAAGCCCAGTGAACAAAAGCACCTCACTTGCCAGGACACGCAGTTCCCTGGCCCTGCCTTTCGGGTAGA 57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000112477.9 |
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| CDS CCA 72 bp | CACTCTGGCTGTGCATTCTCAGTTTGCTCCAGTAGCTaGGTAGCTCTACCCGAAAGGCAGGGCCAGGGAACT | + |
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Preference number: 6 (lower is better) Translates to: HSGCAFSVCSSS*VALPERQGQGT Trigger: AGTTCCCTGGCCCTGCCTTTCGGGTAGAGCTACCCAGCTACTGGAGCAAACTGAGAATGCACAGCCAGAGTG 57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000112477.9 |
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| CDS TCA 72 bp | CAGCCAAACACCCTGTGTTGTGCTGGACATGCTTCTTaGTTTTGGAGACGGACCCTCTGGAGTGGGGACTGC | + |
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Preference number: 6 (lower is better) Translates to: QPNTLCCAGHAS*FWRRTLWSGDC Trigger: GCAGTCCCCACTCCAGAGGGTCCGTCTCCAAAATCAAGAAGCATGTCCAGCACAACACAGGGTGTTTGGCTG 56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000027670.4 ENSMUST00000112477.9 |
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| CDS TCA 72 bp | TTCCTGTGGTCTTCCTGGGTGCTTCTGGAGACACCCTaGCGTCTGTTTCATCTCGTGGCCCATCAGTCTCTG | + |
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Preference number: 6 (lower is better) Translates to: FLWSSWVLLETP*RLFHLVAHQSL Trigger: CAGAGACTGATGGGCCACGAGATGAAACAGACGTCAGGGTGTCTCCAGAAGCACCCAGGAAGACCACAGGAA 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000027670.4 ENSMUST00000112477.9 |
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| CDS GCA 72 bp | GTTCTTCCAGCAGCAAAGGGGCGTGGGAGCTGTGTGTaGTTCCACATTGTAGAGATGGGTCCTGAACTGAGG | + |
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Preference number: 6 (lower is better) Translates to: VLPAAKGRGSCV*FHIVEMGPELR Trigger: CCTCAGTTCAGGACCCATCTCTACAATGTGGAAGCACACACAGCTCCCACGCCCCTTTGCTGCTGGAAGAAC 56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000027670.4 ENSMUST00000112477.9 |
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| CDS GCA 72 bp | TCATCTCGTGGCCCATCAGTCTCTGGGGTTGTGCCTTaGCTCCTTCCTTCACTCGTGGTAACACTGGGTGTT | + |
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Preference number: 6 (lower is better) Translates to: SSRGPSVSGVVP*LLPSLVVTLGV Trigger: AACACCCAGTGTTACCACGAGTGAAGGAAGGAGGCAAGGCACAACCCCAGAGACTGATGGGCCACGAGATGA 56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000027670.4 ENSMUST00000112477.9 |
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| CDS CCA 72 bp | GTGGCTTTCTCCTTCCATCAGAGCACTCTTCATGGATaGCCCCTTGACAGAAACCCACACAGGGCCTGCTAC | + |
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Preference number: 6 (lower is better) Translates to: VAFSFHQSTLHG*PLDRNPHRACY Trigger: GTAGCAGGCCCTGTGTGGGTTTCTGTCAAGGGGCCATCCATGAAGAGTGCTCTGATGGAAGGAGAAAGCCAC 56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000027670.4 ENSMUST00000112477.9 |
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| CDS CAA 72 bp | AAACACCCTGTGTTGTGCTGGACATGCTTCTTGATTTaGGAGACGGACCCTCTGGAGTGGGGACTGCTGCCC | + |
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Preference number: 6 (lower is better) Translates to: KHPVLCWTCFLI*ETDPLEWGLLP Trigger: GGGCAGCAGTCCCCACTCCAGAGGGTCCGTCTCCAAAATCAAGAAGCATGTCCAGCACAACACAGGGTGTTT 56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000027670.4 ENSMUST00000112477.9 |
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| CDS CAA 90 bp | GTGTGGCTTTCTCCTTCCATCAGAGCACTCTTCATGGATGGCCCCTaGACAGAAACCCACACAGGGCCTGCTACTGAAAGCTGGCTTGGT | + |
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Preference number: 6 (lower is better) Translates to: VWLSPSIRALFMDGP*TETHTGPATESWLG Trigger: ACCAAGCCAGCTTTCAGTAGCAGGCCCTGTGTGGGTTTCTGTCAAGGGGCCATCCATGAAGAGTGCTCTGATGGAAGGAGAAAGCCACAC 54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000027670.4 ENSMUST00000112477.9 |
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| CDS TCA 72 bp | CAGGCGGCACCAGTATTTTCTTTGATGCCTGTTGACTaGGGAGGGGGCGTAATGGCAATGGATGGTGACAGC | + |
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Preference number: 6 (lower is better) Translates to: QAAPVFSLMPVD*GGGVMAMDGDS Trigger: GCTGTCACCATCCATTGCCATTACGCCCCCTCCTCAGTCAACAGGCATCAAAGAAAATACTGGTGCCGCCTG 54% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENSMUST00000027670.4 ENSMUST00000112477.9 |
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| CDS TCA 72 bp | CCTCCTTCCTTCACTCGTGGTAACACTGGGTGTTACTaGGTTCCTGGTGCTCCACAGCCAAACACCCTGTGT | + |
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Preference number: 6 (lower is better) Translates to: PPSFTRGNTGCY*VPGAPQPNTLC Trigger: ACACAGGGTGTTTGGCTGTGGAGCACCAGGAACTCAGTAACACCCAGTGTTACCACGAGTGAAGGAAGGAGG 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000027670.4 ENSMUST00000112477.9 |
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| CDS CCA 72 bp | CCTCCTCTCTGCTGCCTGTCCCCGGAACCATTGTCCTaGCTGTTCTTAAGGTTTGTCTTCCATTGGCTGAAG | + |
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Preference number: 6 (lower is better) Translates to: PPLCCLSPEPLS*LFLRFVFHWLK Trigger: CTTCAGCCAATGGAAGACAAACCTTAAGAACAGCCAGGACAATGGTTCCGGGGACAGGCAGCAGAGAGGAGG 54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000027670.4 ENSMUST00000112477.9 |
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| CDS CCA 72 bp | TCCTGGTGCTCCACAGCCAAACACCCTGTGTTGTGCTaGACATGCTTCTTGATTTTGGAGACGGACCCTCTG | + |
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Preference number: 6 (lower is better) Translates to: SWCSTAKHPVLC*TCFLILETDPL Trigger: CAGAGGGTCCGTCTCCAAAATCAAGAAGCATGTCCAGCACAACACAGGGTGTTTGGCTGTGGAGCACCAGGA 54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000027670.4 ENSMUST00000112477.9 |
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| CDS CAA 72 bp | TGTTCCCAGTCACCAGTCGCGGGCCTCTCAATGCATTaGTACCTGAAAGGGAGTTCTTCCAGCAGCAAAGGG | + |
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Preference number: 6 (lower is better) Translates to: CSQSPVAGLSMH*YLKGSSSSSKG Trigger: CCCTTTGCTGCTGGAAGAACTCCCTTTCAGGTACAAATGCATTGAGAGGCCCGCGACTGGTGACTGGGAACA 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000027670.4 ENSMUST00000112477.9 |
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| CDS CAA 72 bp | ACAGCCAAACACCCTGTGTTGTGCTGGACATGCTTCTaGATTTTGGAGACGGACCCTCTGGAGTGGGGACTG | + |
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Preference number: 6 (lower is better) Translates to: TAKHPVLCWTCF*ILETDPLEWGL Trigger: CAGTCCCCACTCCAGAGGGTCCGTCTCCAAAATCAAGAAGCATGTCCAGCACAACACAGGGTGTTTGGCTGT 54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000027670.4 ENSMUST00000112477.9 |
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| CDS TCA 72 bp | TGTTTTGTCTTGGAGAGTTTCCCAGGTCACATGTTCTaGGATCAGGGCCGATGGCCTCGTGGTTCCTGTGGT | + |
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Preference number: 6 (lower is better) Translates to: CFVLESFPGHMF*DQGRWPRGSCG Trigger: ACCACAGGAACCACGAGGCCATCGGCCCTGATCTCAGAACATGTGACCTGGGAAACTCTCCAAGACAAAACA 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000027670.4 ENSMUST00000112477.9 |
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| CDS CAA 72 bp | AAGTATTTCCCATCTCGTTCTCAGGCTGGGGACCTTTaGTTCACTGGGCTTAGCTGGGGCACCTTGGTCCAT | + |
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Preference number: 6 (lower is better) Translates to: KYFPSRSQAGDL*FTGLSWGTLVH Trigger: ATGGACCAAGGTGCCCCAGCTAAGCCCAGTGAACAAAAGGTCCCCAGCCTGAGAACGAGATGGGAAATACTT 53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000027670.4 |
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| CDS CAA 72 bp | CTGAGTTCCTGGTGCTCCACAGCCAAACACCCTGTGTaGTGCTGGACATGCTTCTTGATTTTGGAGACGGAC | + |
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Preference number: 6 (lower is better) Translates to: LSSWCSTAKHPV*CWTCFLILETD Trigger: GTCCGTCTCCAAAATCAAGAAGCATGTCCAGCACAACACAGGGTGTTTGGCTGTGGAGCACCAGGAACTCAG 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000027670.4 ENSMUST00000112477.9 |
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| CDS CAA 72 bp | GGGTCTTGGGTCATTCTCCAGGACGGTCAGGCTGGCTaGGGGAGGAAGAAGGTTACTCTGTTGAAAGTTCTT | + |
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Preference number: 6 (lower is better) Translates to: GSWVILQDGQAG*GRKKVTLLKVL Trigger: AAGAACTTTCAACAGAGTAACCTTCTTCCTCCCCAAGCCAGCCTGACCGTCCTGGAGAATGACCCAAGACCC 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000027670.4 ENSMUST00000112477.9 |
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| CDS CCA 72 bp | TTGGTTGGTGGACACGACAGTGTGACAGATCCACAATaGAGACCCCAGGCGGCACCAGTATTTTCTTTGATG | + |
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Preference number: 6 (lower is better) Translates to: LVGGHDSVTDPQ*RPQAAPVFSLM Trigger: CATCAAAGAAAATACTGGTGCCGCCTGGGGTCTCCATTGTGGATCTGTCACACTGTCGTGTCCACCAACCAA 51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000027670.4 ENSMUST00000112477.9 |
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| CDS CAA 72 bp | GGTCAGGCTGGCTTGGGGAGGAAGAAGGTTACTCTGTaGAAAGTTCTTTCCCTCATCAGGGAGCTTATCTGG | + |
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Preference number: 6 (lower is better) Translates to: GQAGLGRKKVTL*KVLSLIRELIW Trigger: CCAGATAAGCTCCCTGATGAGGGAAAGAACTTTCAACAGAGTAACCTTCTTCCTCCCCAAGCCAGCCTGACC 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000027670.4 ENSMUST00000112477.9 |
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| CDS CAA 90 bp | AACTCCTCCAGGGAGTGCAGCATTTGTTGCTTAGACACCTCTGTTTaGTCTTGGAGAGTTTCCCAGGTCACATGTTCTGAGATCAGGGCC | + |
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Preference number: 6 (lower is better) Translates to: NSSRECSICCLDTSV*SWRVSQVTCSEIRA Trigger: GGCCCTGATCTCAGAACATGTGACCTGGGAAACTCTCCAAGACAAAACAGAGGTGTCTAAGCAACAAATGCTGCACTCCCTGGAGGAGTT 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000027670.4 ENSMUST00000112477.9 |
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| CDS TCA 72 bp | GTCAGGCTGGCTTGGGGAGGAAGAAGGTTACTCTGTTaGAAGTTCTTTCCCTCATCAGGGAGCTTATCTGGT | + |
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Preference number: 6 (lower is better) Translates to: VRLAWGGRRLLC*KFFPSSGSLSG Trigger: ACCAGATAAGCTCCCTGATGAGGGAAAGAACTTTCAACAGAGTAACCTTCTTCCTCCCCAAGCCAGCCTGAC 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000027670.4 ENSMUST00000112477.9 |
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| CDS GCA 72 bp | TGTGCACTTGGAGCTGGTGATAACTCCTCCAGGGAGTaGAGCATTTGTTGCTTAGACACCTCTGTTTTGTCT | + |
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Preference number: 6 (lower is better) Translates to: CALGAGDNSSRE*SICCLDTSVLS Trigger: AGACAAAACAGAGGTGTCTAAGCAACAAATGCTGCACTCCCTGGAGGAGTTATCACCAGCTCCAAGTGCACA 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000027670.4 ENSMUST00000112477.9 |
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| CDS CAA 90 bp | GTCCCCGGAACCATTGTCCTGGCTGTTCTTAAGGTTTGTCTTCCATaGGCTGAAGATGTAGTTTTGCTGGTACCTGTGGTTGGAACTGTT | + |
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Preference number: 6 (lower is better) Translates to: VPGTIVLAVLKVCLP*AEDVVLLVPVVGTV Trigger: AACAGTTCCAACCACAGGTACCAGCAAAACTACATCTTCAGCCAATGGAAGACAAACCTTAAGAACAGCCAGGACAATGGTTCCGGGGAC 48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000027670.4 ENSMUST00000112477.9 |
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| CDS CAA 90 bp | CTGGCTGTTCTTAAGGTTTGTCTTCCATTGGCTGAAGATGTAGTTTaGCTGGTACCTGTGGTTGGAACTGTTCTGTCCCATTCTGAGCCT | + |
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Preference number: 6 (lower is better) Translates to: LAVLKVCLPLAEDVV*LVPVVGTVLSHSEP Trigger: AGGCTCAGAATGGGACAGAACAGTTCCAACCACAGGTACCAGCAAAACTACATCTTCAGCCAATGGAAGACAAACCTTAAGAACAGCCAG 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000027670.4 ENSMUST00000112477.9 |
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| CDS GCA 72 bp | TGGGTACCCTTTCTTTCTTCTGAGATGTCCTCTGTCTaGCAAGGCTCCTTTTCAATAGGATCAGAGCAGCAA | + |
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Preference number: 6 (lower is better) Translates to: WVPFLSSEMSSV*QGSFSIGSEQQ Trigger: TTGCTGCTCTGATCCTATTGAAAAGGAGCCTTGGCAGACAGAGGACATCTCAGAAGAAAGAAAGGGTACCCA 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000027670.4 ENSMUST00000112477.9 |
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| CDS CAA 72 bp | CTTAAGGTTTGTCTTCCATTGGCTGAAGATGTAGTTTaGCTGGTACCTGTGGTTGGAACTGTTCTGTCCCAT | + |
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Preference number: 6 (lower is better) Translates to: LKVCLPLAEDVV*LVPVVGTVLSH Trigger: ATGGGACAGAACAGTTCCAACCACAGGTACCAGCAAAACTACATCTTCAGCCAATGGAAGACAAACCTTAAG 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000027670.4 ENSMUST00000112477.9 |
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| CDS TCA 72 bp | GCTTATCTGGTAGGAAATGTGTCATCTGAATTAGAGTaGTCCTGGGTACCCTTTCTTTCTTCTGAGATGTCC | + |
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Preference number: 6 (lower is better) Translates to: AYLVGNVSSELE*SWVPFLSSEMS Trigger: GGACATCTCAGAAGAAAGAAAGGGTACCCAGGATCACTCTAATTCAGATGACACATTTCCTACCAGATAAGC 43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000027670.4 ENSMUST00000112477.9 |
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