RADAR | Search for sensor designs | Human genes | Mouse genes | Code

Pregenerated sensors for FBXW8 (Mus musculus)

Ensembl gene IDs: ENSMUSG00000032867

Ensembl transcript IDs: ENSMUST00000049474.9

Found 208 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).

Type Sensor Details
3UTR GCA 90 bp CATCCCAGCACACAGGAGGAGACCACCAGGGCTCGGGGAGGGCACTaGACACCCTCTCAGGCCTTCCAGCACCTTCCTGCTGCCAGCCTG +
Preference number: 1 (lower is better)
Translates to: HPSTQEETTRARGGH*TPSQAFQHLPAASL
Trigger: CAGGCTGGCAGCAGGAAGGTGCTGGAAGGCCTGAGAGGGTGTGCAGTGCCCTCCCCGAGCCCTGGTGGTCTCCTCCTGTGTGCTGGGATG
67% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000049474.9
3UTR CCA 90 bp ATGTGTGACCACCCCTGGCTCCCAGGGCTGTGTCCTGGTGTCTTCTaGCTTCAGAGGCAGCACAGGGAGCCAGCCTGTCCCCCACCCTGG +
Preference number: 1 (lower is better)
Translates to: MCDHPWLPGLCPGVF*LQRQHREPACPPPW
Trigger: CCAGGGTGGGGGACAGGCTGGCTCCCTGTGCTGCCTCTGAAGCCAGAAGACACCAGGACACAGCCCTGGGAGCCAGGGGTGGTCACACAT
66% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000049474.9
3UTR CCA 90 bp GCAGGCCTGCCGCAGGAGCCAGGTAACCCATCTGGCTTGGCTGTGTaGGCCACGGTGCCATGGCCCGTGCCATCTGCTGCTTCAAGCAAG +
Preference number: 1 (lower is better)
Translates to: AGLPQEPGNPSGLAV*ATVPWPVPSAASSK
Trigger: CTTGCTTGAAGCAGCAGATGGCACGGGCCATGGCACCGTGGCCCACACAGCCAAGCCAGATGGGTTACCTGGCTCCTGCGGCAGGCCTGC
66% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000049474.9
3UTR CCA 90 bp AAGTCACCGCAGGCCTGCCGCAGGAGCCAGGTAACCCATCTGGCTTaGCTGTGTGGGCCACGGTGCCATGGCCCGTGCCATCTGCTGCTT +
Preference number: 1 (lower is better)
Translates to: KSPQACRRSQVTHLA*LCGPRCHGPCHLLL
Trigger: AAGCAGCAGATGGCACGGGCCATGGCACCGTGGCCCACACAGCCAAGCCAGATGGGTTACCTGGCTCCTGCGGCAGGCCTGCGGTGACTT
66% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000049474.9
3UTR CCA 90 bp AAGGGCAGCTGCCACAGCACAAGCTCGGCTCGGCCAGGCACAGGCTaGTGCTCCTCTTCTGTTCCAGGGAGAAGTTCCCTAGTGCACCGC +
Preference number: 1 (lower is better)
Translates to: KGSCHSTSSARPGTG*CSSSVPGRSSLVHR
Trigger: GCGGTGCACTAGGGAACTTCTCCCTGGAACAGAAGAGGAGCACCAGCCTGTGCCTGGCCGAGCCGAGCTTGTGCTGTGGCAGCTGCCCTT
63% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000049474.9
3UTR TCA 90 bp GACAGCTGGGGAGGCAGCTTGGAGGCTGACGCTTGCCTATGCGTGTaGGATTCTGGTTCCACCCTCAGCACCACACCCAGGAGACAGTGC +
Preference number: 1 (lower is better)
Translates to: DSWGGSLEADACLCV*DSGSTLSTTPRRQC
Trigger: GCACTGTCTCCTGGGTGTGGTGCTGAGGGTGGAACCAGAATCTCACACGCATAGGCAAGCGTCAGCCTCCAAGCTGCCTCCCCAGCTGTC
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000049474.9
3UTR TCA 90 bp ACAGAAATGTCTCCAGTGGACAGCTTAGGACTGGGAATGCTCGAGTaGGGACACAGCAAGACCAGGCCAGCAGGGGGCGCCAGCCCAGCA +
Preference number: 1 (lower is better)
Translates to: TEMSPVDSLGLGMLE*GHSKTRPAGGASPA
Trigger: TGCTGGGCTGGCGCCCCCTGCTGGCCTGGTCTTGCTGTGTCCTCACTCGAGCATTCCCAGTCCTAAGCTGTCCACTGGAGACATTTCTGT
60% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000049474.9
3UTR CCA 90 bp ACAGGGCTTGGGGCAGGAACATGGCCACAGGAGGACTCGGAACTCTaGCCAGGGCAGGGTGGCAAAACAGTAACACTAAGCCAGCAAGGG +
Preference number: 1 (lower is better)
Translates to: TGLGAGTWPQEDSEL*PGQGGKTVTLSQQG
Trigger: CCCTTGCTGGCTTAGTGTTACTGTTTTGCCACCCTGCCCTGGCCAGAGTTCCGAGTCCTCCTGTGGCCATGTTCCTGCCCCAAGCCCTGT
60% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000049474.9
3UTR GCA 90 bp CACCTTGAGGTTTGGCAAACACCTGCCATAAAGGCTGTCCTTGTATaGCGTGACCTTGAGGGAGCCAGTGCCGGAACCAGGCCACTCCCG +
Preference number: 1 (lower is better)
Translates to: HLEVWQTPAIKAVLV*RDLEGASAGTRPLP
Trigger: CGGGAGTGGCCTGGTTCCGGCACTGGCTCCCTCAAGGTCACGGCATACAAGGACAGCCTTTATGGCAGGTGTTTGCCAAACCTCAAGGTG
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000049474.9
3UTR CCA 90 bp TGTCTCCTGAGACCTGGTGGCCTCTGTGCAGGTGTGTTAGGTGCCTaGTCTGTGGGGATTCTGAAGAGCTCTGACTGGGTCTCCTGGCCA +
Preference number: 1 (lower is better)
Translates to: CLLRPGGLCAGVLGA*SVGILKSSDWVSWP
Trigger: TGGCCAGGAGACCCAGTCAGAGCTCTTCAGAATCCCCACAGACCAGGCACCTAACACACCTGCACAGAGGCCACCAGGTCTCAGGAGACA
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000049474.9
3UTR CCA 90 bp CATGCCACCCTTATGGGGGTACCAAGTGCCCCTGCTGAGGGAGGCTaGCAATCCTGTCGCTCAGCTGAAAGACACCACAGTACCCTAGAC +
Preference number: 1 (lower is better)
Translates to: HATLMGVPSAPAEGG*QSCRSAERHHSTLD
Trigger: GTCTAGGGTACTGTGGTGTCTTTCAGCTGAGCGACAGGATTGCCAGCCTCCCTCAGCAGGGGCACTTGGTACCCCCATAAGGGTGGCATG
59% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000049474.9
3UTR GCA 90 bp GGAGGTGAGCTCCCCTGGGCACTTGTGCATGGGGAGAGGCCTCAATaGCAAGATCTGAGATCATGCCACAAACCCACTAGACTCCATCCC +
Preference number: 1 (lower is better)
Translates to: GGELPWALVHGERPQ*QDLRSCHKPTRLHP
Trigger: GGGATGGAGTCTAGTGGGTTTGTGGCATGATCTCAGATCTTGGCATTGAGGCCTCTCCCCATGCACAAGTGCCCAGGGGAGCTCACCTCC
58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000049474.9
3UTR TCA 90 bp GGCTGCGTTTGTCAGGAAGAGACACCACCGGCTAGGCTTGGAGACTaGCCCTATCCCTGTGCAATGACCCTTTCCCTCTGCAGGAAGGAT +
Preference number: 1 (lower is better)
Translates to: GCVCQEETPPARLGD*PYPCAMTLSLCRKD
Trigger: ATCCTTCCTGCAGAGGGAAAGGGTCATTGCACAGGGATAGGGTCAGTCTCCAAGCCTAGCCGGTGGTGTCTCTTCCTGACAAACGCAGCC
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000049474.9
3UTR TCA 90 bp GGAACCAGGCCACTCCCGATGGCATCACTGGCACCTTTGTCTTCATaGGTTGGACAAATGCCAACAGGGCTTGGGGCAGGAACATGGCCA +
Preference number: 1 (lower is better)
Translates to: GTRPLPMASLAPLSS*VGQMPTGLGAGTWP
Trigger: TGGCCATGTTCCTGCCCCAAGCCCTGTTGGCATTTGTCCAACTCATGAAGACAAAGGTGCCAGTGATGCCATCGGGAGTGGCCTGGTTCC
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000049474.9
3UTR TCA 90 bp GAACAAAGCCCCTCTGTTAGGTGGGAGAGGGCAGGCCCTCAGGTCTaGTCCTCTGCAGTTGACCAGTCCAAGTTCCACTGTGCTGGAAGA +
Preference number: 1 (lower is better)
Translates to: EQSPSVRWERAGPQV*SSAVDQSKFHCAGR
Trigger: TCTTCCAGCACAGTGGAACTTGGACTGGTCAACTGCAGAGGATCAGACCTGAGGGCCTGCCCTCTCCCACCTAACAGAGGGGCTTTGTTC
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000049474.9
3UTR TCA 90 bp GAAAGACACCACAGTACCCTAGACTCTGCCATGGGAACTGCTGTCTaGGCTTCAGGAGCAGCATGTCGCCTGCATGGACAGCCTAGTCTG +
Preference number: 1 (lower is better)
Translates to: ERHHSTLDSAMGTAV*ASGAACRLHGQPSL
Trigger: CAGACTAGGCTGTCCATGCAGGCGACATGCTGCTCCTGAAGCTCAGACAGCAGTTCCCATGGCAGAGTCTAGGGTACTGTGGTGTCTTTC
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000049474.9
3UTR TCA 90 bp TGCAGGTGTGTTAGGTGCCTGGTCTGTGGGGATTCTGAAGAGCTCTaGCTGGGTCTCCTGGCCACTATGTGTGGATTTGTCCATGACACT +
Preference number: 1 (lower is better)
Translates to: CRCVRCLVCGDSEEL*LGLLATMCGFVHDT
Trigger: AGTGTCATGGACAAATCCACACATAGTGGCCAGGAGACCCAGTCAGAGCTCTTCAGAATCCCCACAGACCAGGCACCTAACACACCTGCA
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000049474.9
3UTR TCA 90 bp AGAGGCCCAAGTTGGTGGAAGGAGAGGCAGAAGTGCAAGTCACCTTaGGGTTTGGCAAACACCTGCCATAAAGGCTGTCCTTGTATGCCG +
Preference number: 1 (lower is better)
Translates to: RGPSWWKERQKCKSP*GLANTCHKGCPCMP
Trigger: CGGCATACAAGGACAGCCTTTATGGCAGGTGTTTGCCAAACCTCAAGGTGACTTGCACTTCTGCCTCTCCTTCCACCAACTTGGGCCTCT
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000049474.9
3UTR GCA 90 bp GACACAGAACTTATGGGTAAGAAACAGAGCAAGCCCAGAGCAGCCTaGCACTCTGACCACTTGGCAAACCAGGCTCTTCGAGACGTGAAC +
Preference number: 1 (lower is better)
Translates to: DTELMGKKQSKPRAA*HSDHLANQALRDVN
Trigger: GTTCACGTCTCGAAGAGCCTGGTTTGCCAAGTGGTCAGAGTGGCAGGCTGCTCTGGGCTTGCTCTGTTTCTTACCCATAAGTTCTGTGTC
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000049474.9
3UTR CCA 90 bp AGGGCATGTATGCTTGAAACTACTCTAGTCACCTCTGCTCTTCAGTaGCCTTTCATGGCTGCGAAGCCCAGAAAGGAGCTGACCGCACAG +
Preference number: 1 (lower is better)
Translates to: RACMLETTLVTSALQ*PFMAAKPRKELTAQ
Trigger: CTGTGCGGTCAGCTCCTTTCTGGGCTTCGCAGCCATGAAAGGCCACTGAAGAGCAGAGGTGACTAGAGTAGTTTCAAGCATACATGCCCT
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000049474.9
3UTR CCA 90 bp AGACATGGCTGGATGGATACCTGCAGCCTAGTGACACAGAACTTATaGGTAAGAAACAGAGCAAGCCCAGAGCAGCCTGCCACTCTGACC +
Preference number: 1 (lower is better)
Translates to: RHGWMDTCSLVTQNL*VRNRASPEQPATLT
Trigger: GGTCAGAGTGGCAGGCTGCTCTGGGCTTGCTCTGTTTCTTACCCATAAGTTCTGTGTCACTAGGCTGCAGGTATCCATCCAGCCATGTCT
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000049474.9
3UTR TCA 90 bp CTGACAATTGATTCTAGAGATTGGTCCTCAAACTTAAAATCCTCCTaGGTGGTGGGACACTCAGCGAGTGTGTGTGTGTGGCATCACAAT +
Preference number: 1 (lower is better)
Translates to: LTIDSRDWSSNLKSS*VVGHSASVCVWHHN
Trigger: ATTGTGATGCCACACACACACACTCGCTGAGTGTCCCACCACTCAGGAGGATTTTAAGTTTGAGGACCAATCTCTAGAATCAATTGTCAG
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000049474.9
3UTR CAA 90 bp GGGACTCAAAGGGCCCCTGCCGCGGTGAGAGGCAGCACGTCTGTCTaGGGAAGGGCAGCTGCCACAGCACAAGCTCGGCTCGGCCAGGCA +
Preference number: 2 (lower is better)
Translates to: GTQRAPAAVRGSTSV*GRAAATAQARLGQA
Trigger: TGCCTGGCCGAGCCGAGCTTGTGCTGTGGCAGCTGCCCTTCCCAAGACAGACGTGCTGCCTCTCACCGCGGCAGGGGCCCTTTGAGTCCC
68% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000049474.9
3UTR CAA 90 bp CAAGTCACCGCAGGCCTGCCGCAGGAGCCAGGTAACCCATCTGGCTaGGCTGTGTGGGCCACGGTGCCATGGCCCGTGCCATCTGCTGCT +
Preference number: 2 (lower is better)
Translates to: QVTAGLPQEPGNPSG*AVWATVPWPVPSAA
Trigger: AGCAGCAGATGGCACGGGCCATGGCACCGTGGCCCACACAGCCAAGCCAGATGGGTTACCTGGCTCCTGCGGCAGGCCTGCGGTGACTTG
67% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000049474.9
3UTR-3UTR GCA 90 bp AGCTGCCACAGCACAAGCTCGGCTCGGCCAGGCACAGGCTGGTGCTCCTCTTCTGCCAGCGAGGACAGATaGTCTGTGGGGGTAGGGGGC +
Preference number: 2 (lower is better)
Translates to: SCHSTSSARPGTGWCSSSASEDR*SVGVGG
Trigger: GCCCCCTACCCCCACAGAGCATCTGTCCTCGCTGGC...AGAAGAGGAGCACCAGCCTGTGCCTGGCCGAGCCGAGCTTGTGCTGTGGCAGCT
66% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 1 transcripts:
ENSMUST00000049474.9
3UTR-3UTR GCA 90 bp ACAGCACAAGCTCGGCTCGGCCAGGCACAGGCTGGTGCTCCTCTTCTGTTCCAGTCCCAGAGGAGGGGCTaGACTGGAGGGTGCCTGGAG +
Preference number: 2 (lower is better)
Translates to: TAQARLGQAQAGAPLLFQSQRRG*TGGCLE
Trigger: CTCCAGGCACCCTCCAGTGCAGCCCCTCCTCTGGGA...CTGGAACAGAAGAGGAGCACCAGCCTGTGCCTGGCCGAGCCGAGCTTGTGCTGT
64% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000049474.9
3UTR-3UTR CCA 90 bp GGGGCGCCAGCCCAGCAAGAGGGAGGTGAGCTCCCCTGGGCACTTGTGCATGGGTTGTCTCCTGAGACCTaGTGGCCTCTGTGCAGGTGT +
Preference number: 2 (lower is better)
Translates to: GAPAQQEGGELPWALVHGLSPET*WPLCRC
Trigger: ACACCTGCACAGAGGCCACCAGGTCTCAGGAGACAA...CCCATGCACAAGTGCCCAGGGGAGCTCACCTCCCTCTTGCTGGGCTGGCGCCCC
64% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000049474.9
3UTR-3UTR CCA 90 bp AGCTGCCACAGCACAAGCTCGGCTCGGCCAGGCACAGGCTGGTGCTCCTCTTCTGGAGGTGAGCTCCCCTaGGCACTTGTGCATGGGGAG +
Preference number: 2 (lower is better)
Translates to: SCHSTSSARPGTGWCSSSGGELP*ALVHGE
Trigger: CTCCCCATGCACAAGTGCCCAGGGGAGCTCACCTCC...AGAAGAGGAGCACCAGCCTGTGCCTGGCCGAGCCGAGCTTGTGCTGTGGCAGCT
64% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000049474.9
3UTR-3UTR GCA 90 bp GGGGCGCCAGCCCAGCAAGAGGGAGGTGAGCTCCCCTGGGCACTTGTGCATGGGTGCAGGTGTGTTAGGTaGCTGGTCTGTGGGGATTCT +
Preference number: 2 (lower is better)
Translates to: GAPAQQEGGELPWALVHGCRCVR*LVCGDS
Trigger: AGAATCCCCACAGACCAGGCACCTAACACACCTGCA...CCCATGCACAAGTGCCCAGGGGAGCTCACCTCCCTCTTGCTGGGCTGGCGCCCC
63% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 1 transcripts:
ENSMUST00000049474.9
3UTR-3UTR CCA 90 bp AGCAGGGGGCGCCAGCCCAGCAAGAGGGAGGTGAGCTCCCCTGGGCACTTGTGCATGCGTGTGAGATTCTaGTTCCACCCTCAGCACCAC +
Preference number: 2 (lower is better)
Translates to: SRGRQPSKREVSSPGHLCMRVRF*FHPQHH
Trigger: GTGGTGCTGAGGGTGGAACCAGAATCTCACACGCAT...GCACAAGTGCCCAGGGGAGCTCACCTCCCTCTTGCTGGGCTGGCGCCCCCTGCT
63% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000049474.9
3UTR-3UTR CCA 90 bp GGGGCGCCAGCCCAGCAAGAGGGAGGTGAGCTCCCCTGGGCACTTGTGCATGGGACTCTGAAGGCAGAGTaGGTGAGCTATGGCTGCGTT +
Preference number: 2 (lower is better)
Translates to: GAPAQQEGGELPWALVHGTLKAE*VSYGCV
Trigger: AACGCAGCCATAGCTCACCCACTCTGCCTTCAGAGT...CCCATGCACAAGTGCCCAGGGGAGCTCACCTCCCTCTTGCTGGGCTGGCGCCCC
63% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000049474.9
3UTR-3UTR CCA 90 bp AGCTGCCACAGCACAAGCTCGGCTCGGCCAGGCACAGGCTGGTGCTCCTCTTCTATGTGTGACCACCCCTaGCTCCCAGGGCTGTGTCCT +
Preference number: 2 (lower is better)
Translates to: SCHSTSSARPGTGWCSSSMCDHP*LPGLCP
Trigger: AGGACACAGCCCTGGGAGCCAGGGGTGGTCACACAT...AGAAGAGGAGCACCAGCCTGTGCCTGGCCGAGCCGAGCTTGTGCTGTGGCAGCT
63% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000049474.9
3UTR-3UTR TCA 90 bp GGGGCGCCAGCCCAGCAAGAGGGAGGTGAGCTCCCCTGGGCACTTGTGCATGGGGTGTGGATTTGTCCATaGCACTCTGAAGGCAGAGTG +
Preference number: 2 (lower is better)
Translates to: GAPAQQEGGELPWALVHGVWICP*HSEGRV
Trigger: CACTCTGCCTTCAGAGTGTCATGGACAAATCCACAC...CCCATGCACAAGTGCCCAGGGGAGCTCACCTCCCTCTTGCTGGGCTGGCGCCCC
62% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 1 transcripts:
ENSMUST00000049474.9
3UTR-3UTR GCA 90 bp TTGGGGCAGGAACATGGCCACAGGAGGACTCGGAACTCTGGCCAGGGCAGGGTGACCTGGTGGCCTCTGTaGAGGTGTGTTAGGTGCCTG +
Preference number: 2 (lower is better)
Translates to: LGQEHGHRRTRNSGQGRVTWWPL*RCVRCL
Trigger: CAGGCACCTAACACACCTGCACAGAGGCCACCAGGT...CACCCTGCCCTGGCCAGAGTTCCGAGTCCTCCTGTGGCCATGTTCCTGCCCCAA
62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000049474.9
3UTR-3UTR CCA 90 bp GACAAATGCCAACAGGGCTTGGGGCAGGAACATGGCCACAGGAGGACTCGGAACTGGGCCACGGTGCCATaGCCCGTGCCATCTGCTGCT +
Preference number: 2 (lower is better)
Translates to: DKCQQGLGQEHGHRRTRNWATVP*PVPSAA
Trigger: AGCAGCAGATGGCACGGGCCATGGCACCGTGGCCCA...GTTCCGAGTCCTCCTGTGGCCATGTTCCTGCCCCAAGCCCTGTTGGCATTTGTC
62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000049474.9
3UTR-3UTR GCA 90 bp CAGAAGTGGCCGCTTAAGGCAAAAGGCAAGCTGCAGATGTGTGACCACCCCTGGCCAGCACCTTCCTGCTaGCAGCCTGGGATCCACCCC +
Preference number: 2 (lower is better)
Translates to: QKWPLKAKGKLQMCDHPWPAPSC*QPGIHP
Trigger: GGGGTGGATCCCAGGCTGGCAGCAGGAAGGTGCTGG...CCAGGGGTGGTCACACATCTGCAGCTTGCCTTTTGCCTTAAGCGGCCACTTCTG
61% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000049474.9
3UTR-3UTR TCA 90 bp CAGAAGTGGCCGCTTAAGGCAAAAGGCAAGCTGCAGATGTGTGACCACCCCTGGCCAGCAAGAGGGAGGTaGGCTCCCCTGGGCACTTGT +
Preference number: 2 (lower is better)
Translates to: QKWPLKAKGKLQMCDHPWPARGR*APLGTC
Trigger: ACAAGTGCCCAGGGGAGCTCACCTCCCTCTTGCTGG...CCAGGGGTGGTCACACATCTGCAGCTTGCCTTTTGCCTTAAGCGGCCACTTCTG
60% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 1 transcripts:
ENSMUST00000049474.9
3UTR-3UTR CCA 90 bp AGGGGGCAGGGATTGGGGGCTAGAAGGGCATGTATGCTTGAAACTACTCTAGTCGAGGAGGGGCTGCACTaGAGGGTGCCTGGAGGAGAC +
Preference number: 2 (lower is better)
Translates to: RGQGLGARRACMLETTLVEEGLH*RVPGGD
Trigger: GTCTCCTCCAGGCACCCTCCAGTGCAGCCCCTCCTC...GACTAGAGTAGTTTCAAGCATACATGCCCTTCTAGCCCCCAATCCCTGCCCCCT
59% GC, longest homopolymer 5 nt, total homopolymer stretches 14 nt.
Matches the following 1 transcripts:
ENSMUST00000049474.9
3UTR CAA 90 bp CTGTTAGGTGGGAGAGGGCAGGCCCTCAGGTCTGATCCTCTGCAGTaGACCAGTCCAAGTTCCACTGTGCTGGAAGAGGCCCAAGTTGGT +
Preference number: 2 (lower is better)
Translates to: LLGGRGQALRSDPLQ*TSPSSTVLEEAQVG
Trigger: ACCAACTTGGGCCTCTTCCAGCACAGTGGAACTTGGACTGGTCAACTGCAGAGGATCAGACCTGAGGGCCTGCCCTCTCCCACCTAACAG
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000049474.9
3UTR-3UTR TCA 90 bp CCCCCAGCCGGGGGAAATAAACCAGACTACACAGGGCAGAGGAAGACTTCAAACAGGAGACAGTGCAAGTaGAGGCCCTGTGTCCCTGGC +
Preference number: 2 (lower is better)
Translates to: PPAGGNKPDYTGQRKTSNRRQCK*RPCVPG
Trigger: GCCAGGGACACAGGGCCTTCACTTGCACTGTCTCCT...GTTTGAAGTCTTCCTCTGCCCTGTGTAGTCTGGTTTATTTCCCCCGGCTGGGGG
58% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 1 transcripts:
ENSMUST00000049474.9
3UTR-3UTR GCA 90 bp GGAGGTGAGCTCCCCTGGGCACTTGTGCATGGGGAGAGGCCTCAATGCCAAGATATGACCCTTTCCCTCTaGAGGAAGGATGGCTGTCTC +
Preference number: 2 (lower is better)
Translates to: GGELPWALVHGERPQCQDMTLSL*RKDGCL
Trigger: GAGACAGCCATCCTTCCTGCAGAGGGAAAGGGTCAT...ATCTTGGCATTGAGGCCTCTCCCCATGCACAAGTGCCCAGGGGAGCTCACCTCC
58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000049474.9
3UTR-3UTR GCA 90 bp CCCCCAGCCGGGGGAAATAAACCAGACTACACAGGGCAGAGGAAGACTTCAAACCTTCCAGCACCTTCCTaGTGCCAGCCTGGGATCCAC +
Preference number: 2 (lower is better)
Translates to: PPAGGNKPDYTGQRKTSNLPAPS*CQPGIH
Trigger: GTGGATCCCAGGCTGGCAGCAGGAAGGTGCTGGAAG...GTTTGAAGTCTTCCTCTGCCCTGTGTAGTCTGGTTTATTTCCCCCGGCTGGGGG
58% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 1 transcripts:
ENSMUST00000049474.9
3UTR-3UTR CCA 90 bp CAGAAGTGGCCGCTTAAGGCAAAAGGCAAGCTGCAGATGTGTGACCACCCCTGGGTAGGGGGCAGGGATTaGGGGCTAGAAGGGCATGTA +
Preference number: 2 (lower is better)
Translates to: QKWPLKAKGKLQMCDHPWVGGRD*GLEGHV
Trigger: TACATGCCCTTCTAGCCCCCAATCCCTGCCCCCTAC...CCAGGGGTGGTCACACATCTGCAGCTTGCCTTTTGCCTTAAGCGGCCACTTCTG
58% GC, longest homopolymer 5 nt, total homopolymer stretches 17 nt.
Matches the following 1 transcripts:
ENSMUST00000049474.9
3UTR-3UTR CCA 90 bp AAGTTCCACTGTGCTGGAAGAGGCCCAAGTTGGTGGAAGGAGAGGCAGAAGTGCGCAGCACGTCTGTCTTaGGAAGGGCAGCTGCCACAG +
Preference number: 2 (lower is better)
Translates to: KFHCAGRGPSWWKERQKCAARLS*EGQLPQ
Trigger: CTGTGGCAGCTGCCCTTCCCAAGACAGACGTGCTGC...GCACTTCTGCCTCTCCTTCCACCAACTTGGGCCTCTTCCAGCACAGTGGAACTT
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000049474.9
3UTR-3UTR CCA 90 bp GTTCCACTGTGCTGGAAGAGGCCCAAGTTGGTGGAAGGAGAGGCAGAAGTGCAACTTGGGGCAGGAACATaGCCACAGGAGGACTCGGAA +
Preference number: 2 (lower is better)
Translates to: VPLCWKRPKLVEGEAEVQLGAGT*PQEDSE
Trigger: TTCCGAGTCCTCCTGTGGCCATGTTCCTGCCCCAAG...TTGCACTTCTGCCTCTCCTTCCACCAACTTGGGCCTCTTCCAGCACAGTGGAAC
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000049474.9
3UTR-3UTR CCA 90 bp CTGGGGCCTCAGTGGCTGGGTGGAGGTTGGGTGTGCTCTCTATTCTGTAGCAGACAAGTTCCACTGTGCTaGAAGAGGCCCAAGTTGGTG +
Preference number: 2 (lower is better)
Translates to: LGPQWLGGGWVCSLFCSRQVPLC*KRPKLV
Trigger: CACCAACTTGGGCCTCTTCCAGCACAGTGGAACTTG...TCTGCTACAGAATAGAGAGCACACCCAACCTCCACCCAGCCACTGAGGCCCCAG
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000049474.9
3UTR-3UTR TCA 90 bp AAGTTCCACTGTGCTGGAAGAGGCCCAAGTTGGTGGAAGGAGAGGCAGAAGTGCGATTCTGAAGAGCTCTaGCTGGGTCTCCTGGCCACT +
Preference number: 2 (lower is better)
Translates to: KFHCAGRGPSWWKERQKCDSEEL*LGLLAT
Trigger: AGTGGCCAGGAGACCCAGTCAGAGCTCTTCAGAATC...GCACTTCTGCCTCTCCTTCCACCAACTTGGGCCTCTTCCAGCACAGTGGAACTT
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000049474.9
3UTR CAA 90 bp GGTAAGAAACAGAGCAAGCCCAGAGCAGCCTGCCACTCTGACCACTaGGCAAACCAGGCTCTTCGAGACGTGAACAAAGCCCCTCTGTTA +
Preference number: 2 (lower is better)
Translates to: GKKQSKPRAACHSDH*ANQALRDVNKAPLL
Trigger: TAACAGAGGGGCTTTGTTCACGTCTCGAAGAGCCTGGTTTGCCAAGTGGTCAGAGTGGCAGGCTGCTCTGGGCTTGCTCTGTTTCTTACC
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000049474.9
3UTR-3UTR TCA 90 bp AGGGGGCAGGGATTGGGGGCTAGAAGGGCATGTATGCTTGAAACTACTCTAGTCCCTATCCCTGTGCAATaGCCCTTTCCCTCTGCAGGA +
Preference number: 2 (lower is better)
Translates to: RGQGLGARRACMLETTLVPIPVQ*PFPSAG
Trigger: TCCTGCAGAGGGAAAGGGTCATTGCACAGGGATAGG...GACTAGAGTAGTTTCAAGCATACATGCCCTTCTAGCCCCCAATCCCTGCCCCCT
54% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 1 transcripts:
ENSMUST00000049474.9
3UTR-3UTR TCA 90 bp AAGTTCCACTGTGCTGGAAGAGGCCCAAGTTGGTGGAAGGAGAGGCAGAAGTGCATCCTGTCGCTCAGCTaGAAGACACCACAGTACCCT +
Preference number: 2 (lower is better)
Translates to: KFHCAGRGPSWWKERQKCILSLS*KTPQYP
Trigger: AGGGTACTGTGGTGTCTTTCAGCTGAGCGACAGGAT...GCACTTCTGCCTCTCCTTCCACCAACTTGGGCCTCTTCCAGCACAGTGGAACTT
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000049474.9
3UTR-3UTR GCA 90 bp AGGGGGCAGGGATTGGGGGCTAGAAGGGCATGTATGCTTGAAACTACTCTAGTCGTGGCCTTTCATGGCTaGGAAGCCCAGAAAGGAGCT +
Preference number: 2 (lower is better)
Translates to: RGQGLGARRACMLETTLVVAFHG*EAQKGA
Trigger: AGCTCCTTTCTGGGCTTCGCAGCCATGAAAGGCCAC...GACTAGAGTAGTTTCAAGCATACATGCCCTTCTAGCCCCCAATCCCTGCCCCCT
54% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 1 transcripts:
ENSMUST00000049474.9
3UTR-3UTR CCA 90 bp AAGTTCCACTGTGCTGGAAGAGGCCCAAGTTGGTGGAAGGAGAGGCAGAAGTGCGGCAGCAATGGAGTCTaGTTCTGTACAGGGCAACAG +
Preference number: 2 (lower is better)
Translates to: KFHCAGRGPSWWKERQKCGSNGV*FCTGQQ
Trigger: CTGTTGCCCTGTACAGAACCAGACTCCATTGCTGCC...GCACTTCTGCCTCTCCTTCCACCAACTTGGGCCTCTTCCAGCACAGTGGAACTT
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000049474.9
3UTR-3UTR CCA 90 bp GCTGTCTCCTTCATAGCACATGTACAGGACAGAACAGCTCCTACAGGTAAGGTGGCTGGGGAGGCAGCTTaGAGGCTGACGCTTGCCTAT +
Preference number: 2 (lower is better)
Translates to: AVSFIAHVQDRTAPTGKVAGEAA*RLTLAY
Trigger: ATAGGCAAGCGTCAGCCTCCAAGCTGCCTCCCCAGC...CACCTTACCTGTAGGAGCTGTTCTGTCCTGTACATGTGCTATGAAGGAGACAGC
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000049474.9
3UTR-3UTR GCA 90 bp AGGGGGCAGGGATTGGGGGCTAGAAGGGCATGTATGCTTGAAACTACTCTAGTCCTGACCCTATCCCTGTaGAATGACCCTTTCCCTCTG +
Preference number: 2 (lower is better)
Translates to: RGQGLGARRACMLETTLVLTLSL*NDPFPL
Trigger: CAGAGGGAAAGGGTCATTGCACAGGGATAGGGTCAG...GACTAGAGTAGTTTCAAGCATACATGCCCTTCTAGCCCCCAATCCCTGCCCCCT
53% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 1 transcripts:
ENSMUST00000049474.9
3UTR-3UTR CCA 90 bp GAAGCCCAGAAAGGAGCTGACCGCACAGCCAATTTCTCTGACAGAAATGTCTCCGGCAACAGGGCTGTGTaGCCACAGTCATACAGGACA +
Preference number: 2 (lower is better)
Translates to: EAQKGADRTANFSDRNVSGNRAV*PQSYRT
Trigger: TGTCCTGTATGACTGTGGCCACACAGCCCTGTTGCC...GGAGACATTTCTGTCAGAGAAATTGGCTGTGCGGTCAGCTCCTTTCTGGGCTTC
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000049474.9
3UTR-3UTR TCA 90 bp AAACCAGACTACACAGGGCAGAGGAAGACTTCAAACGAGTCCTTACAGGAGCAGAGGAACTTTGTCTCCTaGGACCTGGTGGCCTCTGTG +
Preference number: 2 (lower is better)
Translates to: KPDYTGQRKTSNESLQEQRNFVS*DLVASV
Trigger: CACAGAGGCCACCAGGTCTCAGGAGACAAAGTTCCT...CTGCTCCTGTAAGGACTCGTTTGAAGTCTTCCTCTGCCCTGTGTAGTCTGGTTT
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000049474.9
3UTR-3UTR TCA 90 bp CCCCCAGCCGGGGGAAATAAACCAGACTACACAGGGCAGAGGAAGACTTCAAACAAGGGCATGTATGCTTaGAACTACTCTAGTCACCTC +
Preference number: 2 (lower is better)
Translates to: PPAGGNKPDYTGQRKTSNKGMYA*NYSSHL
Trigger: GAGGTGACTAGAGTAGTTTCAAGCATACATGCCCTT...GTTTGAAGTCTTCCTCTGCCCTGTGTAGTCTGGTTTATTTCCCCCGGCTGGGGG
51% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 1 transcripts:
ENSMUST00000049474.9
3UTR-3UTR CCA 90 bp GAAGCCCAGAAAGGAGCTGACCGCACAGCCAATTTCTCTGACAGAAATGTCTCCGGAGAAAGGCAGCAATaGAGTCTGGTTCTGTACAGG +
Preference number: 2 (lower is better)
Translates to: EAQKGADRTANFSDRNVSGERQQ*SLVLYR
Trigger: CCTGTACAGAACCAGACTCCATTGCTGCCTTTCTCC...GGAGACATTTCTGTCAGAGAAATTGGCTGTGCGGTCAGCTCCTTTCTGGGCTTC
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000049474.9
3UTR-3UTR GCA 90 bp AAACCAGACTACACAGGGCAGAGGAAGACTTCAAACGAGTCCTTACAGGAGCAGTGGGTGAGCTATGGCTaGGTTTGTCAGGAAGAGACA +
Preference number: 2 (lower is better)
Translates to: KPDYTGQRKTSNESLQEQWVSYG*VCQEET
Trigger: TGTCTCTTCCTGACAAACGCAGCCATAGCTCACCCA...CTGCTCCTGTAAGGACTCGTTTGAAGTCTTCCTCTGCCCTGTGTAGTCTGGTTT
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000049474.9
3UTR-3UTR GCA 90 bp AGTGTGTGTGTGTGGCATCACAATGCTCTACTTATAAAGTTGTCCCCTCCCCCAAGGCAAAAGGCAAGCTaGAGATGTGTGACCACCCCT +
Preference number: 2 (lower is better)
Translates to: SVCVWHHNALLIKLSPPPRQKAS*RCVTTP
Trigger: AGGGGTGGTCACACATCTGCAGCTTGCCTTTTGCCT...TGGGGGAGGGGACAACTTTATAAGTAGAGCATTGTGATGCCACACACACACACT
50% GC, longest homopolymer 5 nt, total homopolymer stretches 17 nt.
Matches the following 1 transcripts:
ENSMUST00000049474.9
3UTR-3UTR CCA 90 bp AGTGTGTGTGTGTGGCATCACAATGCTCTACTTATAAAGTTGTCCCCTCCCCCAACCTCTGCTCTTCAGTaGCCTTTCATGGCTGCGAAG +
Preference number: 2 (lower is better)
Translates to: SVCVWHHNALLIKLSPPPTSALQ*PFMAAK
Trigger: CTTCGCAGCCATGAAAGGCCACTGAAGAGCAGAGGT...TGGGGGAGGGGACAACTTTATAAGTAGAGCATTGTGATGCCACACACACACACT
50% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000049474.9
3UTR GCA 72 bp GCACAGGAGGGGCTCTGCCACCTCGCACACGGGCAGTaGTGGCCAAGTCACCGCAGGCCTGCCGCAGGAGCC +
Preference number: 3 (lower is better)
Translates to: AQEGLCHLAHGQ*WPSHRRPAAGA
Trigger: GGCTCCTGCGGCAGGCCTGCGGTGACTTGGCCAGCACTGCCCGTGTGCGAGGTGGCAGAGCCCCTCCTGTGC
72% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000049474.9
3UTR TCA 72 bp TCCACCCTCAGCACCACACCCAGGAGACAGTGCAAGTaGAGGCCCTGTGTCCCTGGCCTATGGAACGAGGGG +
Preference number: 3 (lower is better)
Translates to: STLSTTPRRQCK*RPCVPGLWNEG
Trigger: CCCCTCGTTCCATAGGCCAGGGACACAGGGCCTTCACTTGCACTGTCTCCTGGGTGTGGTGCTGAGGGTGGA
62% GC, longest homopolymer 4 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000049474.9
3UTR CCA 72 bp AACCCATCTGGCTTGGCTGTGTGGGCCACGGTGCCATaGCCCGTGCCATCTGCTGCTTCAAGCAAGAGCCCA +
Preference number: 3 (lower is better)
Translates to: NPSGLAVWATVP*PVPSAASSKSP
Trigger: TGGGCTCTTGCTTGAAGCAGCAGATGGCACGGGCCATGGCACCGTGGCCCACACAGCCAAGCCAGATGGGTT
62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000049474.9
3UTR-3UTR CAA 90 bp ACAGCACAAGCTCGGCTCGGCCAGGCACAGGCTGGTGCTCCTCTTCTGTTCCAGCCTGGGAGAGGAACTTaGTCTCCTGAGACCTGGTGG +
Preference number: 3 (lower is better)
Translates to: TAQARLGQAQAGAPLLFQPGRGT*SPETWW
Trigger: CCACCAGGTCTCAGGAGACAAAGTTCCTCTCCCAGG...CTGGAACAGAAGAGGAGCACCAGCCTGTGCCTGGCCGAGCCGAGCTTGTGCTGT
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000049474.9
3UTR-3UTR CAA 90 bp CAGAAGTGGCCGCTTAAGGCAAAAGGCAAGCTGCAGATGTGTGACCACCCCTGGAGCTCCCCTGGGCACTaGTGCATGGGGAGAGGCCTC +
Preference number: 3 (lower is better)
Translates to: QKWPLKAKGKLQMCDHPWSSPGH*CMGRGL
Trigger: GAGGCCTCTCCCCATGCACAAGTGCCCAGGGGAGCT...CCAGGGGTGGTCACACATCTGCAGCTTGCCTTTTGCCTTAAGCGGCCACTTCTG
61% GC, longest homopolymer 4 nt, total homopolymer stretches 16 nt.
Matches the following 1 transcripts:
ENSMUST00000049474.9
3UTR TCA 72 bp GGAGAGGGCAGGCCCTCAGGTCTGATCCTCTGCAGTTaGCCAGTCCAAGTTCCACTGTGCTGGAAGAGGCCC +
Preference number: 3 (lower is better)
Translates to: GEGRPSGLILCS*PVQVPLCWKRP
Trigger: GGGCCTCTTCCAGCACAGTGGAACTTGGACTGGTCAACTGCAGAGGATCAGACCTGAGGGCCTGCCCTCTCC
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000049474.9
3UTR GCA 72 bp TGTGTGGGCCACGGTGCCATGGCCCGTGCCATCTGCTaGTTCAAGCAAGAGCCCATGGGTAGTGTCTCCATC +
Preference number: 3 (lower is better)
Translates to: CVGHGAMARAIC*FKQEPMGSVSI
Trigger: GATGGAGACACTACCCATGGGCTCTTGCTTGAAGCAGCAGATGGCACGGGCCATGGCACCGTGGCCCACACA
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000049474.9
3UTR CCA 72 bp GTTGGACAAATGCCAACAGGGCTTGGGGCAGGAACATaGCCACAGGAGGACTCGGAACTCTGGCCAGGGCAG +
Preference number: 3 (lower is better)
Translates to: VGQMPTGLGAGT*PQEDSELWPGQ
Trigger: CTGCCCTGGCCAGAGTTCCGAGTCCTCCTGTGGCCATGTTCCTGCCCCAAGCCCTGTTGGCATTTGTCCAAC
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000049474.9
3UTR GCA 72 bp CAGAGCAGAAGTGGCCGCTTAAGGCAAAAGGCAAGCTaGAGATGTGTGACCACCCCTGGCTCCCAGGGCTGT +
Preference number: 3 (lower is better)
Translates to: QSRSGRLRQKAS*RCVTTPGSQGC
Trigger: ACAGCCCTGGGAGCCAGGGGTGGTCACACATCTGCAGCTTGCCTTTTGCCTTAAGCGGCCACTTCTGCTCTG
60% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000049474.9
3UTR CCA 72 bp GGGGCAGGAACATGGCCACAGGAGGACTCGGAACTCTaGCCAGGGCAGGGTGGCAAAACAGTAACACTAAGC +
Preference number: 3 (lower is better)
Translates to: GAGTWPQEDSEL*PGQGGKTVTLS
Trigger: GCTTAGTGTTACTGTTTTGCCACCCTGCCCTGGCCAGAGTTCCGAGTCCTCCTGTGGCCATGTTCCTGCCCC
60% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000049474.9
3UTR-3UTR CAA 90 bp AGGGGGCAGGGATTGGGGGCTAGAAGGGCATGTATGCTTGAAACTACTCTAGTCAGCTGGGGAGGCAGCTaGGAGGCTGACGCTTGCCTA +
Preference number: 3 (lower is better)
Translates to: RGQGLGARRACMLETTLVSWGGS*EADACL
Trigger: TAGGCAAGCGTCAGCCTCCAAGCTGCCTCCCCAGCT...GACTAGAGTAGTTTCAAGCATACATGCCCTTCTAGCCCCCAATCCCTGCCCCCT
58% GC, longest homopolymer 5 nt, total homopolymer stretches 14 nt.
Matches the following 1 transcripts:
ENSMUST00000049474.9
3UTR TCA 72 bp CGGCTAGGCTTGGAGACTGACCCTATCCCTGTGCAATaGCCCTTTCCCTCTGCAGGAAGGATGGCTGTCTCC +
Preference number: 3 (lower is better)
Translates to: RLGLETDPIPVQ*PFPSAGRMAVS
Trigger: GGAGACAGCCATCCTTCCTGCAGAGGGAAAGGGTCATTGCACAGGGATAGGGTCAGTCTCCAAGCCTAGCCG
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000049474.9
3UTR TCA 72 bp CCCTCTGTTAGGTGGGAGAGGGCAGGCCCTCAGGTCTaGTCCTCTGCAGTTGACCAGTCCAAGTTCCACTGT +
Preference number: 3 (lower is better)
Translates to: PSVRWERAGPQV*SSAVDQSKFHC
Trigger: ACAGTGGAACTTGGACTGGTCAACTGCAGAGGATCAGACCTGAGGGCCTGCCCTCTCCCACCTAACAGAGGG
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000049474.9
3UTR CCA 72 bp GAGGAGGAGGAGGAGGAGAAAGGCAGCAATGGAGTCTaGTTCTGTACAGGGCAACAGGGCTGTGTGGCCACA +
Preference number: 3 (lower is better)
Translates to: EEEEEEKGSNGV*FCTGQQGCVAT
Trigger: TGTGGCCACACAGCCCTGTTGCCCTGTACAGAACCAGACTCCATTGCTGCCTTTCTCCTCCTCCTCCTCCTC
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000049474.9
3UTR CCA 72 bp AGACCTGGTGGCCTCTGTGCAGGTGTGTTAGGTGCCTaGTCTGTGGGGATTCTGAAGAGCTCTGACTGGGTC +
Preference number: 3 (lower is better)
Translates to: RPGGLCAGVLGA*SVGILKSSDWV
Trigger: GACCCAGTCAGAGCTCTTCAGAATCCCCACAGACCAGGCACCTAACACACCTGCACAGAGGCCACCAGGTCT
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000049474.9
3UTR CCA 72 bp CTTATGGGGGTACCAAGTGCCCCTGCTGAGGGAGGCTaGCAATCCTGTCGCTCAGCTGAAAGACACCACAGT +
Preference number: 3 (lower is better)
Translates to: LMGVPSAPAEGG*QSCRSAERHHS
Trigger: ACTGTGGTGTCTTTCAGCTGAGCGACAGGATTGCCAGCCTCCCTCAGCAGGGGCACTTGGTACCCCCATAAG
58% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000049474.9
3UTR TCA 72 bp CACAGTACCCTAGACTCTGCCATGGGAACTGCTGTCTaGGCTTCAGGAGCAGCATGTCGCCTGCATGGACAG +
Preference number: 3 (lower is better)
Translates to: HSTLDSAMGTAV*ASGAACRLHGQ
Trigger: CTGTCCATGCAGGCGACATGCTGCTCCTGAAGCTCAGACAGCAGTTCCCATGGCAGAGTCTAGGGTACTGTG
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000049474.9
3UTR GCA 72 bp GTTTGGCAAACACCTGCCATAAAGGCTGTCCTTGTATaGCGTGACCTTGAGGGAGCCAGTGCCGGAACCAGG +
Preference number: 3 (lower is better)
Translates to: VWQTPAIKAVLV*RDLEGASAGTR
Trigger: CCTGGTTCCGGCACTGGCTCCCTCAAGGTCACGGCATACAAGGACAGCCTTTATGGCAGGTGTTTGCCAAAC
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000049474.9
3UTR CCA 72 bp TTCCCTGGGAGAGGAACTTTGTCTCCTGAGACCTGGTaGCCTCTGTGCAGGTGTGTTAGGTGCCTGGTCTGT +
Preference number: 3 (lower is better)
Translates to: FPGRGTLSPETW*PLCRCVRCLVC
Trigger: ACAGACCAGGCACCTAACACACCTGCACAGAGGCCACCAGGTCTCAGGAGACAAAGTTCCTCTCCCAGGGAA
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000049474.9
3UTR TCA 72 bp TGCTTCAAGCAAGAGCCCATGGGTAGTGTCTCCATCTaGGCCACTGTCACGGGGCAGTCATCACCTGAAACC +
Preference number: 3 (lower is better)
Translates to: CFKQEPMGSVSI*ATVTGQSSPET
Trigger: GGTTTCAGGTGATGACTGCCCCGTGACAGTGGCTCAGATGGAGACACTACCCATGGGCTCTTGCTTGAAGCA
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000049474.9
3UTR TCA 72 bp CCACTCCCGATGGCATCACTGGCACCTTTGTCTTCATaGGTTGGACAAATGCCAACAGGGCTTGGGGCAGGA +
Preference number: 3 (lower is better)
Translates to: PLPMASLAPLSS*VGQMPTGLGAG
Trigger: TCCTGCCCCAAGCCCTGTTGGCATTTGTCCAACTCATGAAGACAAAGGTGCCAGTGATGCCATCGGGAGTGG
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000049474.9
3UTR GCA 72 bp CATGACACTCTGAAGGCAGAGTGGGTGAGCTATGGCTaGGTTTGTCAGGAAGAGACACCACCGGCTAGGCTT +
Preference number: 3 (lower is better)
Translates to: HDTLKAEWVSYG*VCQEETPPARL
Trigger: AAGCCTAGCCGGTGGTGTCTCTTCCTGACAAACGCAGCCATAGCTCACCCACTCTGCCTTCAGAGTGTCATG
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000049474.9
3UTR GCA 72 bp CTCCCCTGGGCACTTGTGCATGGGGAGAGGCCTCAATaGCAAGATCTGAGATCATGCCACAAACCCACTAGA +
Preference number: 3 (lower is better)
Translates to: LPWALVHGERPQ*QDLRSCHKPTR
Trigger: TCTAGTGGGTTTGTGGCATGATCTCAGATCTTGGCATTGAGGCCTCTCCCCATGCACAAGTGCCCAGGGGAG
56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000049474.9
3UTR GCA 72 bp TCTAGTCACCTCTGCTCTTCAGTGGCCTTTCATGGCTaGGAAGCCCAGAAAGGAGCTGACCGCACAGCCAAT +
Preference number: 3 (lower is better)
Translates to: SSHLCSSVAFHG*EAQKGADRTAN
Trigger: ATTGGCTGTGCGGTCAGCTCCTTTCTGGGCTTCGCAGCCATGAAAGGCCACTGAAGAGCAGAGGTGACTAGA
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000049474.9
3UTR GCA 72 bp AAGACACCACAGTACCCTAGACTCTGCCATGGGAACTaGTGTCTGAGCTTCAGGAGCAGCATGTCGCCTGCA +
Preference number: 3 (lower is better)
Translates to: KTPQYPRLCHGN*CLSFRSSMSPA
Trigger: TGCAGGCGACATGCTGCTCCTGAAGCTCAGACAGCAGTTCCCATGGCAGAGTCTAGGGTACTGTGGTGTCTT
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000049474.9
3UTR CCA 72 bp GGTGCCTGGTCTGTGGGGATTCTGAAGAGCTCTGACTaGGTCTCCTGGCCACTATGTGTGGATTTGTCCATG +
Preference number: 3 (lower is better)
Translates to: GAWSVGILKSSD*VSWPLCVDLSM
Trigger: CATGGACAAATCCACACATAGTGGCCAGGAGACCCAGTCAGAGCTCTTCAGAATCCCCACAGACCAGGCACC
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000049474.9
3UTR CCA 72 bp CCAGTGCCGGAACCAGGCCACTCCCGATGGCATCACTaGCACCTTTGTCTTCATGAGTTGGACAAATGCCAA +
Preference number: 3 (lower is better)
Translates to: PVPEPGHSRWHH*HLCLHELDKCQ
Trigger: TTGGCATTTGTCCAACTCATGAAGACAAAGGTGCCAGTGATGCCATCGGGAGTGGCCTGGTTCCGGCACTGG
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000049474.9
3UTR CCA 72 bp AGTACAGGCTCTTCATCAACCACACTGAAGCTGACTTaGTGGCACCCAAGGCTACTGCTGAGGAGCTGGGAG +
Preference number: 3 (lower is better)
Translates to: STGSSSTTLKLT*WHPRLLLRSWE
Trigger: CTCCCAGCTCCTCAGCAGTAGCCTTGGGTGCCACCAAGTCAGCTTCAGTGTGGTTGATGAAGAGCCTGTACT
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000049474.9
3UTR-3UTR CAA 90 bp AGGGGGCAGGGATTGGGGGCTAGAAGGGCATGTATGCTTGAAACTACTCTAGTCGAGCTATGGCTGCGTTaGTCAGGAAGAGACACCACC +
Preference number: 3 (lower is better)
Translates to: RGQGLGARRACMLETTLVELWLR*SGRDTT
Trigger: GGTGGTGTCTCTTCCTGACAAACGCAGCCATAGCTC...GACTAGAGTAGTTTCAAGCATACATGCCCTTCTAGCCCCCAATCCCTGCCCCCT
54% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 1 transcripts:
ENSMUST00000049474.9
3UTR-3UTR CAA 90 bp CAGAAGTGGCCGCTTAAGGCAAAAGGCAAGCTGCAGATGTGTGACCACCCCTGGCAGCCCACTTGTTTTTaGAGCTGGTATTCCCTGGGA +
Preference number: 3 (lower is better)
Translates to: QKWPLKAKGKLQMCDHPWQPTCF*SWYSLG
Trigger: TCCCAGGGAATACCAGCTCAAAAAACAAGTGGGCTG...CCAGGGGTGGTCACACATCTGCAGCTTGCCTTTTGCCTTAAGCGGCCACTTCTG
54% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 1 transcripts:
ENSMUST00000049474.9
3UTR TCA 72 bp ACTGGGTCTCCTGGCCACTATGTGTGGATTTGTCCATaGCACTCTGAAGGCAGAGTGGGTGAGCTATGGCTG +
Preference number: 3 (lower is better)
Translates to: TGSPGHYVWICP*HSEGRVGELWL
Trigger: CAGCCATAGCTCACCCACTCTGCCTTCAGAGTGTCATGGACAAATCCACACATAGTGGCCAGGAGACCCAGT
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000049474.9
3UTR TCA 72 bp GTTAGGTGCCTGGTCTGTGGGGATTCTGAAGAGCTCTaGCTGGGTCTCCTGGCCACTATGTGTGGATTTGTC +
Preference number: 3 (lower is better)
Translates to: VRCLVCGDSEEL*LGLLATMCGFV
Trigger: GACAAATCCACACATAGTGGCCAGGAGACCCAGTCAGAGCTCTTCAGAATCCCCACAGACCAGGCACCTAAC
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000049474.9
3UTR GCA 72 bp GAACTGCTGTCTGAGCTTCAGGAGCAGCATGTCGCCTaGATGGACAGCCTAGTCTGTGTGCACATGTCATGT +
Preference number: 3 (lower is better)
Translates to: ELLSELQEQHVA*MDSLVCVHMSC
Trigger: ACATGACATGTGCACACAGACTAGGCTGTCCATGCAGGCGACATGCTGCTCCTGAAGCTCAGACAGCAGTTC
54% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000049474.9
3UTR CCA 72 bp CCCGATGGCATCACTGGCACCTTTGTCTTCATGAGTTaGACAAATGCCAACAGGGCTTGGGGCAGGAACATG +
Preference number: 3 (lower is better)
Translates to: PDGITGTFVFMS*TNANRAWGRNM
Trigger: CATGTTCCTGCCCCAAGCCCTGTTGGCATTTGTCCAACTCATGAAGACAAAGGTGCCAGTGATGCCATCGGG
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000049474.9
3UTR CCA 72 bp TTTGTCTTCATGAGTTGGACAAATGCCAACAGGGCTTaGGGCAGGAACATGGCCACAGGAGGACTCGGAACT +
Preference number: 3 (lower is better)
Translates to: FVFMSWTNANRA*GRNMATGGLGT
Trigger: AGTTCCGAGTCCTCCTGTGGCCATGTTCCTGCCCCAAGCCCTGTTGGCATTTGTCCAACTCATGAAGACAAA
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000049474.9
3UTR CCA 72 bp TGGATGGATACCTGCAGCCTAGTGACACAGAACTTATaGGTAAGAAACAGAGCAAGCCCAGAGCAGCCTGCC +
Preference number: 3 (lower is better)
Translates to: WMDTCSLVTQNL*VRNRASPEQPA
Trigger: GGCAGGCTGCTCTGGGCTTGCTCTGTTTCTTACCCATAAGTTCTGTGTCACTAGGCTGCAGGTATCCATCCA
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000049474.9
3UTR-3UTR CAA 90 bp AGTGTGTGTGTGTGGCATCACAATGCTCTACTTATAAAGTTGTCCCCTCCCCCAAAATGCCAACAGGGCTaGGGGCAGGAACATGGCCAC +
Preference number: 3 (lower is better)
Translates to: SVCVWHHNALLIKLSPPPKCQQG*GQEHGH
Trigger: GTGGCCATGTTCCTGCCCCAAGCCCTGTTGGCATTT...TGGGGGAGGGGACAACTTTATAAGTAGAGCATTGTGATGCCACACACACACACT
52% GC, longest homopolymer 5 nt, total homopolymer stretches 17 nt.
Matches the following 1 transcripts:
ENSMUST00000049474.9
3UTR CCA 72 bp ATGCTTGAAACTACTCTAGTCACCTCTGCTCTTCAGTaGCCTTTCATGGCTGCGAAGCCCAGAAAGGAGCTG +
Preference number: 3 (lower is better)
Translates to: MLETTLVTSALQ*PFMAAKPRKEL
Trigger: CAGCTCCTTTCTGGGCTTCGCAGCCATGAAAGGCCACTGAAGAGCAGAGGTGACTAGAGTAGTTTCAAGCAT
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000049474.9
3UTR CCA 72 bp ATGTGTGGATTTGTCCATGACACTCTGAAGGCAGAGTaGGTGAGCTATGGCTGCGTTTGTCAGGAAGAGACA +
Preference number: 3 (lower is better)
Translates to: MCGFVHDTLKAE*VSYGCVCQEET
Trigger: TGTCTCTTCCTGACAAACGCAGCCATAGCTCACCCACTCTGCCTTCAGAGTGTCATGGACAAATCCACACAT
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000049474.9
3UTR TCA 72 bp GATTCTAGAGATTGGTCCTCAAACTTAAAATCCTCCTaGGTGGTGGGACACTCAGCGAGTGTGTGTGTGTGG +
Preference number: 3 (lower is better)
Translates to: DSRDWSSNLKSS*VVGHSASVCVW
Trigger: CCACACACACACACTCGCTGAGTGTCCCACCACTCAGGAGGATTTTAAGTTTGAGGACCAATCTCTAGAATC
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000049474.9
3UTR CCA 72 bp CACATGTACAGGACAGAACAGCTCCTACAGGTAAGGTaGCCCTATAATTATCAACGGTGTGAATCCCAGAGG +
Preference number: 3 (lower is better)
Translates to: HMYRTEQLLQVR*PYNYQRCESQR
Trigger: CCTCTGGGATTCACACCGTTGATAATTATAGGGCCACCTTACCTGTAGGAGCTGTTCTGTCCTGTACATGTG
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000049474.9
3UTR CCA 72 bp CTCATCAGTGTAGAACCTTTAATAACAGAGCAGAAGTaGCCGCTTAAGGCAAAAGGCAAGCTGCAGATGTGT +
Preference number: 3 (lower is better)
Translates to: LISVEPLITEQK*PLKAKGKLQMC
Trigger: ACACATCTGCAGCTTGCCTTTTGCCTTAAGCGGCCACTTCTGCTCTGTTATTAAAGGTTCTACACTGATGAG
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000049474.9
3UTR CCA 72 bp CATCAGTGTGAAGCAGGCTTTGTGCTAACATTTATTTaGGGACAGGTAAGTACAGGCTCTTCATCAACCACA +
Preference number: 3 (lower is better)
Translates to: HQCEAGFVLTFI*GQVSTGSSSTT
Trigger: TGTGGTTGATGAAGAGCCTGTACTTACCTGTCCCCAAATAAATGTTAGCACAAAGCCTGCTTCACACTGATG
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000049474.9
3UTR CAA 72 bp GCAGGCCTGCCGCAGGAGCCAGGTAACCCATCTGGCTaGGCTGTGTGGGCCACGGTGCCATGGCCCGTGCCA +
Preference number: 4 (lower is better)
Translates to: AGLPQEPGNPSG*AVWATVPWPVP
Trigger: TGGCACGGGCCATGGCACCGTGGCCCACACAGCCAAGCCAGATGGGTTACCTGGCTCCTGCGGCAGGCCTGC
69% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000049474.9
CDS-3UTR GCA 90 bp ACAGCACAAGCTCGGCTCGGCCAGGCACAGGCTGGTGCTCCTCTTCTGTTCCAGCGAGAGGCAGCGCTCTaGTTCCAGGCTGTACACCAG +
Preference number: 4 (lower is better)
Translates to: TAQARLGQAQAGAPLLFQREAAL*FQAVHQ
Trigger: CTGGTGTACAGCCTGGAAGCAGAGCGCTGCCTCTCG...CTGGAACAGAAGAGGAGCACCAGCCTGTGCCTGGCCGAGCCGAGCTTGTGCTGT
62% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000049474.9
CDS-3UTR GCA 90 bp TTGGGGCAGGAACATGGCCACAGGAGGACTCGGAACTCTGGCCAGGGCAGGGTGGTCATCCATCTGGACTaGGGACACCCCCAGCTGATG +
Preference number: 4 (lower is better)
Translates to: LGQEHGHRRTRNSGQGRVVIHLD*GHPQLM
Trigger: CATCAGCTGGGGGTGTCCGCAGTCCAGATGGATGAC...CACCCTGCCCTGGCCAGAGTTCCGAGTCCTCCTGTGGCCATGTTCCTGCCCCAA
62% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000049474.9
CDS-3UTR TCA 90 bp AAGTTCCACTGTGCTGGAAGAGGCCCAAGTTGGTGGAAGGAGAGGCAGAAGTGCGCGGACACCCCCAGCTaGTGGGCAGACAGCGACAGG +
Preference number: 4 (lower is better)
Translates to: KFHCAGRGPSWWKERQKCADTPS*WADSDR
Trigger: CCTGTCGCTGTCTGCCCATCAGCTGGGGGTGTCCGC...GCACTTCTGCCTCTCCTTCCACCAACTTGGGCCTCTTCCAGCACAGTGGAACTT
61% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000049474.9
CDS-3UTR GCA 90 bp TTGGGGCAGGAACATGGCCACAGGAGGACTCGGAACTCTGGCCAGGGCAGGGTGCGCTCACGGCACCTTTaGGATTCTTCCAGTTGGCTC +
Preference number: 4 (lower is better)
Translates to: LGQEHGHRRTRNSGQGRVRSRHL*DSSSWL
Trigger: GAGCCAACTGGAAGAATCGCAAAGGTGCCGTGAGCG...CACCCTGCCCTGGCCAGAGTTCCGAGTCCTCCTGTGGCCATGTTCCTGCCCCAA
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000049474.9
CDS-3UTR CCA 90 bp GGAGGTGAGCTCCCCTGGGCACTTGTGCATGGGGAGAGGCCTCAATGCCAAGATCCAGATCCCCGGCTGTaGCTATTGCCACAGGGTACC +
Preference number: 4 (lower is better)
Translates to: GGELPWALVHGERPQCQDPDPRL*LLPQGT
Trigger: GGTACCCTGTGGCAATAGCCACAGCCGGGGATCTGG...ATCTTGGCATTGAGGCCTCTCCCCATGCACAAGTGCCCAGGGGAGCTCACCTCC
61% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 1 transcripts:
ENSMUST00000049474.9
3UTR CAA 72 bp GGGAGAGGGCAGGCCCTCAGGTCTGATCCTCTGCAGTaGACCAGTCCAAGTTCCACTGTGCTGGAAGAGGCC +
Preference number: 4 (lower is better)
Translates to: GRGQALRSDPLQ*TSPSSTVLEEA
Trigger: GGCCTCTTCCAGCACAGTGGAACTTGGACTGGTCAACTGCAGAGGATCAGACCTGAGGGCCTGCCCTCTCCC
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000049474.9
CDS-3UTR TCA 90 bp GTTCCACTGTGCTGGAAGAGGCCCAAGTTGGTGGAAGGAGAGGCAGAAGTGCAAAAGTCGCGGATGAGCTaGTCCACCAGCGGCTCGGGC +
Preference number: 4 (lower is better)
Translates to: VPLCWKRPKLVEGEAEVQKSRMS*STSGSG
Trigger: GCCCGAGCCGCTGGTGGATCAGCTCATCCGCGACTT...TTGCACTTCTGCCTCTCCTTCCACCAACTTGGGCCTCTTCCAGCACAGTGGAAC
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000049474.9
CDS-3UTR TCA 90 bp CTGGGGCCTCAGTGGCTGGGTGGAGGTTGGGTGTGCTCTCTATTCTGTAGCAGAACAGGAAGGGGGCTCTaGAAGGCCAGCTGGTCCACA +
Preference number: 4 (lower is better)
Translates to: LGPQWLGGGWVCSLFCSRTGRGL*KASWST
Trigger: TGTGGACCAGCTGGCCTTTCAGAGCCCCCTTCCTGT...TCTGCTACAGAATAGAGAGCACACCCAACCTCCACCCAGCCACTGAGGCCCCAG
60% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000049474.9
CDS-3UTR GCA 90 bp CCCCCAGCCGGGGGAAATAAACCAGACTACACAGGGCAGAGGAAGACTTCAAACCCACGTAGTCCCAGGTaGGGGTGTCCCACACCCGCA +
Preference number: 4 (lower is better)
Translates to: PPAGGNKPDYTGQRKTSNPRSPR*GCPTPA
Trigger: TGCGGGTGTGGGACACCCGCACCTGGGACTACGTGG...GTTTGAAGTCTTCCTCTGCCCTGTGTAGTCTGGTTTATTTCCCCCGGCTGGGGG
60% GC, longest homopolymer 5 nt, total homopolymer stretches 14 nt.
Matches the following 1 transcripts:
ENSMUST00000049474.9
CDS-3UTR TCA 90 bp GGAGGTGAGCTCCCCTGGGCACTTGTGCATGGGGAGAGGCCTCAATGCCAAGATCATGTCTTGCTCACCTaGGCACACAGTCCCAGCTCT +
Preference number: 4 (lower is better)
Translates to: GGELPWALVHGERPQCQDHVLLT*AHSPSS
Trigger: AGAGCTGGGACTGTGTGCTCAGGTGAGCAAGACATG...ATCTTGGCATTGAGGCCTCTCCCCATGCACAAGTGCCCAGGGGAGCTCACCTCC
59% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000049474.9
CDS-3UTR TCA 90 bp TTGGGGCAGGAACATGGCCACAGGAGGACTCGGAACTCTGGCCAGGGCAGGGTGATGACCACACCATCGTaGGAACGCACGTCACACAAA +
Preference number: 4 (lower is better)
Translates to: LGQEHGHRRTRNSGQGRVMTTPS*ERTSHK
Trigger: TTTGTGTGACGTGCGTTCTCACGATGGTGTGGTCAT...CACCCTGCCCTGGCCAGAGTTCCGAGTCCTCCTGTGGCCATGTTCCTGCCCCAA
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000049474.9
CDS-3UTR TCA 90 bp GACAAATGCCAACAGGGCTTGGGGCAGGAACATGGCCACAGGAGGACTCGGAACCCTCCTCGCCTCCACTaGCAACCTTCCAGTCATCCA +
Preference number: 4 (lower is better)
Translates to: DKCQQGLGQEHGHRRTRNPPRLH*QPSSHP
Trigger: TGGATGACTGGAAGGTTGTCAGTGGAGGCGAGGAGG...GTTCCGAGTCCTCCTGTGGCCATGTTCCTGCCCCAAGCCCTGTTGGCATTTGTC
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000049474.9
CDS-3UTR CCA 90 bp ACAGCACAAGCTCGGCTCGGCCAGGCACAGGCTGGTGCTCCTCTTCTGTTCCAGCAAAGGCAACCTGGCTaGCTGAGACATCCAGACATG +
Preference number: 4 (lower is better)
Translates to: TAQARLGQAQAGAPLLFQQRQPG*LRHPDM
Trigger: CATGTCTGGATGTCTCAGCCAGCCAGGTTGCCTTTG...CTGGAACAGAAGAGGAGCACCAGCCTGTGCCTGGCCGAGCCGAGCTTGTGCTGT
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000049474.9
CDS-3UTR GCA 90 bp AGGGGGCAGGGATTGGGGGCTAGAAGGGCATGTATGCTTGAAACTACTCTAGTCCTCAGCGCCTGTGACTaGGCCAACTCCTCCTGCCAG +
Preference number: 4 (lower is better)
Translates to: RGQGLGARRACMLETTLVLSACD*ANSSCQ
Trigger: CTGGCAGGAGGAGTTGGCGCAGTCACAGGCGCTGAG...GACTAGAGTAGTTTCAAGCATACATGCCCTTCTAGCCCCCAATCCCTGCCCCCT
58% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 1 transcripts:
ENSMUST00000049474.9
CDS-3UTR GCA 90 bp AAGTTCCACTGTGCTGGAAGAGGCCCAAGTTGGTGGAAGGAGAGGCAGAAGTGCACAGCGTCGGGAACATaGTCCAGCTCGCTCACGGCA +
Preference number: 4 (lower is better)
Translates to: KFHCAGRGPSWWKERQKCTASGT*SSSLTA
Trigger: TGCCGTGAGCGAGCTGGAGCATGTTCCCGACGCTGT...GCACTTCTGCCTCTCCTTCCACCAACTTGGGCCTCTTCCAGCACAGTGGAACTT
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000049474.9
CDS-3UTR CCA 90 bp AGCTGCCACAGCACAAGCTCGGCTCGGCCAGGCACAGGCTGGTGCTCCTCTTCTCACAAAGGAGACATATaGCTGCATTCCAGGATCCTC +
Preference number: 4 (lower is better)
Translates to: SCHSTSSARPGTGWCSSSHKGDI*LHSRIL
Trigger: GAGGATCCTGGAATGCAGCCATATGTCTCCTTTGTG...AGAAGAGGAGCACCAGCCTGTGCCTGGCCGAGCCGAGCTTGTGCTGTGGCAGCT
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000049474.9
CDS-3UTR CCA 90 bp GTTCCACTGTGCTGGAAGAGGCCCAAGTTGGTGGAAGGAGAGGCAGAAGTGCAAAGCGCACAGGGTGCCTaGAGTGCACTTCCCACAGCT +
Preference number: 4 (lower is better)
Translates to: VPLCWKRPKLVEGEAEVQSAQGA*SALPTA
Trigger: AGCTGTGGGAAGTGCACTCCAGGCACCCTGTGCGCT...TTGCACTTCTGCCTCTCCTTCCACCAACTTGGGCCTCTTCCAGCACAGTGGAAC
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000049474.9
3UTR CAA 72 bp CAGAGCAAGCCCAGAGCAGCCTGCCACTCTGACCACTaGGCAAACCAGGCTCTTCGAGACGTGAACAAAGCC +
Preference number: 4 (lower is better)
Translates to: QSKPRAACHSDH*ANQALRDVNKA
Trigger: GGCTTTGTTCACGTCTCGAAGAGCCTGGTTTGCCAAGTGGTCAGAGTGGCAGGCTGCTCTGGGCTTGCTCTG
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000049474.9
CDS-3UTR TCA 90 bp GACAAATGCCAACAGGGCTTGGGGCAGGAACATGGCCACAGGAGGACTCGGAACCTGCCAGCGAGCTGTTaGTCCTCACAAAGGAGACAT +
Preference number: 4 (lower is better)
Translates to: DKCQQGLGQEHGHRRTRNLPASC*SSQRRH
Trigger: ATGTCTCCTTTGTGAGGATCAACAGCTCGCTGGCAG...GTTCCGAGTCCTCCTGTGGCCATGTTCCTGCCCCAAGCCCTGTTGGCATTTGTC
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000049474.9
CDS-3UTR CCA 90 bp TTGGGGCAGGAACATGGCCACAGGAGGACTCGGAACTCTGGCCAGGGCAGGGTGTGCGATTCTTCCAGTTaGCTCTTAATGTGTGCTCCT +
Preference number: 4 (lower is better)
Translates to: LGQEHGHRRTRNSGQGRVCDSSS*LLMCAP
Trigger: AGGAGCACACATTAAGAGCCAACTGGAAGAATCGCA...CACCCTGCCCTGGCCAGAGTTCCGAGTCCTCCTGTGGCCATGTTCCTGCCCCAA
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000049474.9
CDS-3UTR GCA 90 bp CCATGTGCTGCAGAGCCTCTCTCCAACTCTAACATTTGTAAAACTGCCCTTTCCCTGCTGTGGGGAAGGTaGCCCTCCTGTCGGCACAGC +
Preference number: 4 (lower is better)
Translates to: PCAAEPLSNSNICKTALSLLWGR*PSCRHS
Trigger: GCTGTGCCGACAGGAGGGGCACCTTCCCCACAGCAG...GGAAAGGGCAGTTTTACAAATGTTAGAGTTGGAGAGAGGCTCTGCAGCACATGG
56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000049474.9
CDS-3UTR CCA 90 bp CAGAAGTGGCCGCTTAAGGCAAAAGGCAAGCTGCAGATGTGTGACCACCCCTGGACTCCAAAGGCAACCTaGCTGGCTGAGACATCCAGA +
Preference number: 4 (lower is better)
Translates to: QKWPLKAKGKLQMCDHPWTPKAT*LAETSR
Trigger: TCTGGATGTCTCAGCCAGCCAGGTTGCCTTTGGAGT...CCAGGGGTGGTCACACATCTGCAGCTTGCCTTTTGCCTTAAGCGGCCACTTCTG
56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000049474.9
CDS-3UTR TCA 90 bp GAAGCCCAGAAAGGAGCTGACCGCACAGCCAATTTCTCTGACAGAAATGTCTCCATGAAGGGTTCTGGCTaGGTCGTCGGCCTTCAGCAG +
Preference number: 4 (lower is better)
Translates to: EAQKGADRTANFSDRNVSMKGSG*VVGLQQ
Trigger: CTGCTGAAGGCCGACGACTCAGCCAGAACCCTTCAT...GGAGACATTTCTGTCAGAGAAATTGGCTGTGCGGTCAGCTCCTTTCTGGGCTTC
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000049474.9
3UTR CAA 72 bp CTTTGTCTTCATGAGTTGGACAAATGCCAACAGGGCTaGGGGCAGGAACATGGCCACAGGAGGACTCGGAAC +
Preference number: 4 (lower is better)
Translates to: LCLHELDKCQQG*GQEHGHRRTRN
Trigger: GTTCCGAGTCCTCCTGTGGCCATGTTCCTGCCCCAAGCCCTGTTGGCATTTGTCCAACTCATGAAGACAAAG
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000049474.9
3UTR CAA 72 bp AAGTACAGGCTCTTCATCAACCACACTGAAGCTGACTaGGTGGCACCCAAGGCTACTGCTGAGGAGCTGGGA +
Preference number: 4 (lower is better)
Translates to: KYRLFINHTEAD*VAPKATAEELG
Trigger: TCCCAGCTCCTCAGCAGTAGCCTTGGGTGCCACCAAGTCAGCTTCAGTGTGGTTGATGAAGAGCCTGTACTT
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000049474.9
CDS-3UTR TCA 90 bp AGTGTGTGTGTGTGGCATCACAATGCTCTACTTATAAAGTTGTCCCCTCCCCCAGGCAACCTGGCTGGCTaGGACATCCAGACATGTGGC +
Preference number: 4 (lower is better)
Translates to: SVCVWHHNALLIKLSPPPGNLAG*DIQTCG
Trigger: GCCACATGTCTGGATGTCTCAGCCAGCCAGGTTGCC...TGGGGGAGGGGACAACTTTATAAGTAGAGCATTGTGATGCCACACACACACACT
53% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000049474.9
CDS-3UTR GCA 90 bp AGGGGGCAGGGATTGGGGGCTAGAAGGGCATGTATGCTTGAAACTACTCTAGTCTTGGCGAGGCACTCTTaGAAGATGAGCTTCCAGCAG +
Preference number: 4 (lower is better)
Translates to: RGQGLGARRACMLETTLVLARHS*KMSFQQ
Trigger: CTGCTGGAAGCTCATCTTGCAAGAGTGCCTCGCCAA...GACTAGAGTAGTTTCAAGCATACATGCCCTTCTAGCCCCCAATCCCTGCCCCCT
53% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 1 transcripts:
ENSMUST00000049474.9
CDS-3UTR GCA 90 bp GTTCCACTGTGCTGGAAGAGGCCCAAGTTGGTGGAAGGAGAGGCAGAAGTGCAAGGTAAAGTCTCCAAGTaGATTGCCCAGCTTCGAGAG +
Preference number: 4 (lower is better)
Translates to: VPLCWKRPKLVEGEAEVQGKVSK*IAQLRE
Trigger: CTCTCGAAGCTGGGCAATGCACTTGGAGACTTTACC...TTGCACTTCTGCCTCTCCTTCCACCAACTTGGGCCTCTTCCAGCACAGTGGAAC
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000049474.9
CDS-3UTR GCA 90 bp CAGAAGTGGCCGCTTAAGGCAAAAGGCAAGCTGCAGATGTGTGACCACCCCTGGACAGCTTCTGGTTCATaGGGTAATCCCACACAGACA +
Preference number: 4 (lower is better)
Translates to: QKWPLKAKGKLQMCDHPWTASGS*GNPTQT
Trigger: TGTCTGTGTGGGATTACCGCATGAACCAGAAGCTGT...CCAGGGGTGGTCACACATCTGCAGCTTGCCTTTTGCCTTAAGCGGCCACTTCTG
53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000049474.9
CDS-3UTR CCA 90 bp AGGGGGCAGGGATTGGGGGCTAGAAGGGCATGTATGCTTGAAACTACTCTAGTCAAGCCGTGGCAACAATaGGCTTTTCTTGGCTCAGCG +
Preference number: 4 (lower is better)
Translates to: RGQGLGARRACMLETTLVKPWQQ*AFLGSA
Trigger: CGCTGAGCCAAGAAAAGCCCATTGTTGCCACGGCTT...GACTAGAGTAGTTTCAAGCATACATGCCCTTCTAGCCCCCAATCCCTGCCCCCT
53% GC, longest homopolymer 5 nt, total homopolymer stretches 14 nt.
Matches the following 1 transcripts:
ENSMUST00000049474.9
CDS-3UTR CCA 90 bp CTGGGGCCTCAGTGGCTGGGTGGAGGTTGGGTGTGCTCTCTATTCTGTAGCAGACAAAAGCAGAAGCCGTaGCAACAATGGGCTTTTCTT +
Preference number: 4 (lower is better)
Translates to: LGPQWLGGGWVCSLFCSRQKQKP*QQWAFL
Trigger: AAGAAAAGCCCATTGTTGCCACGGCTTCTGCTTTTG...TCTGCTACAGAATAGAGAGCACACCCAACCTCCACCCAGCCACTGAGGCCCCAG
53% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 1 transcripts:
ENSMUST00000049474.9
CDS-3UTR CCA 90 bp AGTGTGTGTGTGTGGCATCACAATGCTCTACTTATAAAGTTGTCCCCTCCCCCATCGCTGCGGAGGTCATaGATCCTCACTCTCCTGTCC +
Preference number: 4 (lower is better)
Translates to: SVCVWHHNALLIKLSPPPSLRRS*ILTLLS
Trigger: GGACAGGAGAGTGAGGATCCATGACCTCCGCAGCGA...TGGGGGAGGGGACAACTTTATAAGTAGAGCATTGTGATGCCACACACACACACT
52% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000049474.9
CDS-3UTR TCA 90 bp CCATGTGCTGCAGAGCCTCTCTCCAACTCTAACATTTGTAAAACTGCCCTTTCCCCACGATGTCTCCTGTaGCAGGCAAAGTTGTCGAGG +
Preference number: 4 (lower is better)
Translates to: PCAAEPLSNSNICKTALSPRCLL*QAKLSR
Trigger: CCTCGACAACTTTGCCTGTCACAGGAGACATCGTGG...GGAAAGGGCAGTTTTACAAATGTTAGAGTTGGAGAGAGGCTCTGCAGCACATGG
51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000049474.9
CDS-3UTR GCA 90 bp CAGACTACACAGGGCAGAGGAAGACTTCAAACGAGTCCTTACAGGAGCAGCACAATGGGGGAAAGACAGTaGGAGGTCATAGCTGTATCC +
Preference number: 4 (lower is better)
Translates to: QTTQGRGRLQTSPYRSSTMGERQ*EVIAVS
Trigger: GGATACAGCTATGACCTCGCACTGTCTTTCCCCCAT...TGTGCTGCTCCTGTAAGGACTCGTTTGAAGTCTTCCTCTGCCCTGTGTAGTCTG
51% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000049474.9
3UTR CAA 72 bp GTGTGTGTGTGGCATCACAATGCTCTACTTATAAAGTaGTCCCCTCCCCCAGTTTGGTGGTGGTTGGAGGCT +
Preference number: 4 (lower is better)
Translates to: VCVWHHNALLIK*SPPPVWWWLEA
Trigger: AGCCTCCAACCACCACCAAACTGGGGGAGGGGACAACTTTATAAGTAGAGCATTGTGATGCCACACACACAC
51% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000049474.9
CDS-3UTR TCA 90 bp GTTCCACTGTGCTGGAAGAGGCCCAAGTTGGTGGAAGGAGAGGCAGAAGTGCAAGATACTGGAATATATTaGTGGCCAGTTCGTAAGGCA +
Preference number: 4 (lower is better)
Translates to: VPLCWKRPKLVEGEAEVQDTGIY*WPVRKA
Trigger: TGCCTTACGAACTGGCCATCAATATATTCCAGTATC...TTGCACTTCTGCCTCTCCTTCCACCAACTTGGGCCTCTTCCAGCACAGTGGAAC
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000049474.9
CDS-3UTR GCA 90 bp AAACCAGACTACACAGGGCAGAGGAAGACTTCAAACGAGTCCTTACAGGAGCAGTTGGCTCTTAATGTGTaGTCCTTGGCGAGGCACTCT +
Preference number: 4 (lower is better)
Translates to: KPDYTGQRKTSNESLQEQLALNV*SLARHS
Trigger: AGAGTGCCTCGCCAAGGAGCACACATTAAGAGCCAA...CTGCTCCTGTAAGGACTCGTTTGAAGTCTTCCTCTGCCCTGTGTAGTCTGGTTT
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000049474.9
CDS-3UTR TCA 90 bp AGTGTGTGTGTGTGGCATCACAATGCTCTACTTATAAAGTTGTCCCCTCCCCCAACGTGTATCCAGCAATaGCCACACCATCGTGAGAAC +
Preference number: 4 (lower is better)
Translates to: SVCVWHHNALLIKLSPPPTCIQQ*PHHREN
Trigger: GTTCTCACGATGGTGTGGTCATTGCTGGATACACGT...TGGGGGAGGGGACAACTTTATAAGTAGAGCATTGTGATGCCACACACACACACT
49% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000049474.9
CDS-3UTR CCA 90 bp ATGTACAGGACAGAACAGCTCCTACAGGTAAGGTGGCCCTATAATTATCAACGGAGACATCCAGACATGTaGCAGGCTGGCCATAGACAT +
Preference number: 4 (lower is better)
Translates to: MYRTEQLLQVRWPYNYQRRHPDM*QAGHRH
Trigger: ATGTCTATGGCCAGCCTGCCACATGTCTGGATGTCT...CCGTTGATAATTATAGGGCCACCTTACCTGTAGGAGCTGTTCTGTCCTGTACAT
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000049474.9
CDS-3UTR CCA 90 bp GAAGCCCAGAAAGGAGCTGACCGCACAGCCAATTTCTCTGACAGAAATGTCTCCCTTCTGTTCAGATACTaGAATATATTGATGGCCAGT +
Preference number: 4 (lower is better)
Translates to: EAQKGADRTANFSDRNVSLLFRY*NILMAS
Trigger: ACTGGCCATCAATATATTCCAGTATCTGAACAGAAG...GGAGACATTTCTGTCAGAGAAATTGGCTGTGCGGTCAGCTCCTTTCTGGGCTTC
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000049474.9
CDS-3UTR CAA 90 bp GGGGCGCCAGCCCAGCAAGAGGGAGGTGAGCTCCCCTGGGCACTTGTGCATGGGAAGTCTCCAAGTGCATaGCCCAGCTTCGAGAGGCAG +
Preference number: 5 (lower is better)
Translates to: GAPAQQEGGELPWALVHGKSPSA*PSFERQ
Trigger: CTGCCTCTCGAAGCTGGGCAATGCACTTGGAGACTT...CCCATGCACAAGTGCCCAGGGGAGCTCACCTCCCTCTTGCTGGGCTGGCGCCCC
64% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000049474.9
CDS-3UTR CAA 90 bp AGCTGCCACAGCACAAGCTCGGCTCGGCCAGGCACAGGCTGGTGCTCCTCTTCTCCGCTGACCATGAGGTaGGGAGGGCTATCCCGGATG +
Preference number: 5 (lower is better)
Translates to: SCHSTSSARPGTGWCSSSPLTMR*GGLSRM
Trigger: CATCCGGGATAGCCCTCCCAACCTCATGGTCAGCGG...AGAAGAGGAGCACCAGCCTGTGCCTGGCCGAGCCGAGCTTGTGCTGTGGCAGCT
64% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000049474.9
CDS-3UTR CAA 90 bp GGGGCGCCAGCCCAGCAAGAGGGAGGTGAGCTCCCCTGGGCACTTGTGCATGGGACTCTCCTGTCCATGTaGCCGCTGACCATGAGGTTG +
Preference number: 5 (lower is better)
Translates to: GAPAQQEGGELPWALVHGTLLSM*PLTMRL
Trigger: CAACCTCATGGTCAGCGGCAACATGGACAGGAGAGT...CCCATGCACAAGTGCCCAGGGGAGCTCACCTCCCTCTTGCTGGGCTGGCGCCCC
64% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000049474.9
CDS TCA 90 bp TCAAAGAAGGGCACGTCATCCAGCTCATTCAAGTCGCGGATGAGCTaGTCCACCAGCGGCTCGGGCTCCGTGGCGTCGCGGTCTGGGGGT +
Preference number: 5 (lower is better)
Translates to: SKKGTSSSSFKSRMS*STSGSGSVASRSGG
Trigger: ACCCCCAGACCGCGACGCCACGGAGCCCGAGCCGCTGGTGGATCAGCTCATCCGCGACTTGAATGAGCTGGATGACGTGCCCTTCTTTGA
63% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000049474.9
CDS TCA 90 bp CTGACAACCTTCCAGTCATCCATCTGGACTGCGGACACCCCCAGCTaGTGGGCAGACAGCGACAGGGCGATCTTATCGCTGCGGAGGTCA +
Preference number: 5 (lower is better)
Translates to: LTTFQSSIWTADTPS*WADSDRAILSLRRS
Trigger: TGACCTCCGCAGCGATAAGATCGCCCTGTCGCTGTCTGCCCATCAGCTGGGGGTGTCCGCAGTCCAGATGGATGACTGGAAGGTTGTCAG
60% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000049474.9
CDS TCA 90 bp TCATGCGGTAATCCCACACAGACACCAGCCCCTCCTCGCCTCCACTaGCAACCTTCCAGTCATCCATCTGGACTGCGGACACCCCCAGCT +
Preference number: 5 (lower is better)
Translates to: SCGNPTQTPAPPRLH*QPSSHPSGLRTPPA
Trigger: AGCTGGGGGTGTCCGCAGTCCAGATGGATGACTGGAAGGTTGTCAGTGGAGGCGAGGAGGGGCTGGTGTCTGTGTGGGATTACCGCATGA
60% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000049474.9
CDS TCA 90 bp CAGACATGTGGCAGGCTGGCCATAGACATAATGAAGGGTTCTGGCTaGGTCGTCGGCCTTCAGCAGGTACACCAGATCCCCGGCTGTGGC +
Preference number: 5 (lower is better)
Translates to: QTCGRLAIDIMKGSG*VVGLQQVHQIPGCG
Trigger: GCCACAGCCGGGGATCTGGTGTACCTGCTGAAGGCCGACGACTCAGCCAGAACCCTTCATTATGTCTATGGCCAGCCTGCCACATGTCTG
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000049474.9
CDS TCA 90 bp ACCCGCACATCCCCTGACGTGTATCCAGCAATGACCACACCATCGTaGGAACGCACGTCACACAAAACAGCGTCGGGAACATGCTCCAGC +
Preference number: 5 (lower is better)
Translates to: TRTSPDVYPAMTTPS*ERTSHKTASGTCSS
Trigger: GCTGGAGCATGTTCCCGACGCTGTTTTGTGTGACGTGCGTTCTCACGATGGTGTGGTCATTGCTGGATACACGTCAGGGGATGTGCGGGT
57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000049474.9
CDS GCA 90 bp GTTGGGAGGGCTATCCCGGATGTTGACACAGGTAAAGTCTCCAAGTaGATTGCCCAGCTTCGAGAGGCAGCGCTCTGCTTCCAGGCTGTA +
Preference number: 5 (lower is better)
Translates to: VGRAIPDVDTGKVSK*IAQLREAALCFQAV
Trigger: TACAGCCTGGAAGCAGAGCGCTGCCTCTCGAAGCTGGGCAATGCACTTGGAGACTTTACCTGTGTCAACATCCGGGATAGCCCTCCCAAC
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000049474.9
CDS GCA 90 bp ACAAAACAGCGTCGGGAACATGCTCCAGCTCGCTCACGGCACCTTTaGGATTCTTCCAGTTGGCTCTTAATGTGTGCTCCTTGGCGAGGC +
Preference number: 5 (lower is better)
Translates to: TKQRREHAPARSRHL*DSSSWLLMCAPWRG
Trigger: GCCTCGCCAAGGAGCACACATTAAGAGCCAACTGGAAGAATCGCAAAGGTGCCGTGAGCGAGCTGGAGCATGTTCCCGACGCTGTTTTGT
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000049474.9
CDS GCA 90 bp GTCGTCGGCCTTCAGCAGGTACACCAGATCCCCGGCTGTGGCTATTaGCACAGGGTACCTCCCAGTATTCGGAACTATTTCAAGGTAGTC +
Preference number: 5 (lower is better)
Translates to: VVGLQQVHQIPGCGY*HRVPPSIRNYFKVV
Trigger: GACTACCTTGAAATAGTTCCGAATACTGGGAGGTACCCTGTGGCAATAGCCACAGCCGGGGATCTGGTGTACCTGCTGAAGGCCGACGAC
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000049474.9
CDS CCA 90 bp TGGCTGAGTCGTCGGCCTTCAGCAGGTACACCAGATCCCCGGCTGTaGCTATTGCCACAGGGTACCTCCCAGTATTCGGAACTATTTCAA +
Preference number: 5 (lower is better)
Translates to: WLSRRPSAGTPDPRL*LLPQGTSQYSELFQ
Trigger: TTGAAATAGTTCCGAATACTGGGAGGTACCCTGTGGCAATAGCCACAGCCGGGGATCTGGTGTACCTGCTGAAGGCCGACGACTCAGCCA
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000049474.9
CDS-3UTR CAA 90 bp CCCCCAGCCGGGGGAAATAAACCAGACTACACAGGGCAGAGGAAGACTTCAAACCTTGGCGAGGCACTCTaGCAAGATGAGCTTCCAGCA +
Preference number: 5 (lower is better)
Translates to: PPAGGNKPDYTGQRKTSNLGEAL*QDELPA
Trigger: TGCTGGAAGCTCATCTTGCAAGAGTGCCTCGCCAAG...GTTTGAAGTCTTCCTCTGCCCTGTGTAGTCTGGTTTATTTCCCCCGGCTGGGGG
56% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 1 transcripts:
ENSMUST00000049474.9
CDS-3UTR CAA 90 bp AAGTTCCACTGTGCTGGAAGAGGCCCAAGTTGGTGGAAGGAGAGGCAGAAGTGCTCGCTCACGGCACCTTaGCGATTCTTCCAGTTGGCT +
Preference number: 5 (lower is better)
Translates to: KFHCAGRGPSWWKERQKCSLTAP*RFFQLA
Trigger: AGCCAACTGGAAGAATCGCAAAGGTGCCGTGAGCGA...GCACTTCTGCCTCTCCTTCCACCAACTTGGGCCTCTTCCAGCACAGTGGAACTT
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000049474.9
CDS-3UTR CAA 90 bp ACAGCACAAGCTCGGCTCGGCCAGGCACAGGCTGGTGCTCCTCTTCTGTTCCAGCAAGGGCTTGTATTCTaGCGTCATGCTCAAAACGAA +
Preference number: 5 (lower is better)
Translates to: TAQARLGQAQAGAPLLFQQGLVF*RHAQNE
Trigger: TTCGTTTTGAGCATGACGCAAGAATACAAGCCCTTG...CTGGAACAGAAGAGGAGCACCAGCCTGTGCCTGGCCGAGCCGAGCTTGTGCTGT
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000049474.9
CDS-3UTR CAA 90 bp AAGTTCCACTGTGCTGGAAGAGGCCCAAGTTGGTGGAAGGAGAGGCAGAAGTGCAACAATGGGCTTTTCTaGGCTCAGCGCAAGGGCTTG +
Preference number: 5 (lower is better)
Translates to: KFHCAGRGPSWWKERQKCNNGLF*AQRKGL
Trigger: CAAGCCCTTGCGCTGAGCCAAGAAAAGCCCATTGTT...GCACTTCTGCCTCTCCTTCCACCAACTTGGGCCTCTTCCAGCACAGTGGAACTT
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000049474.9
CDS GCA 90 bp GCCGGTACCACAGCACCTCGTCTTCAGCAATCACCTTCCATGTCTTaGTCACCTGAGCACACAGTCCCAGCTCTCTTCTGTTCAGATACT +
Preference number: 5 (lower is better)
Translates to: AGTTAPRLQQSPSMS*SPEHTVPALFCSDT
Trigger: AGTATCTGAACAGAAGAGAGCTGGGACTGTGTGCTCAGGTGAGCAAGACATGGAAGGTGATTGCTGAAGACGAGGTGCTGTGGTACCGGC
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000049474.9
CDS GCA 90 bp TCTCAGGTCCCAAATGTTAAGGATCCCATCCTCGTAAGCCGCCACTaGCAGCGAGCTGTTGATCCTCACAAAGGAGACATATGGCTGCAT +
Preference number: 5 (lower is better)
Translates to: SQVPNVKDPILVSRH*QRAVDPHKGDIWLH
Trigger: ATGCAGCCATATGTCTCCTTTGTGAGGATCAACAGCTCGCTGGCAGTGGCGGCTTACGAGGATGGGATCCTTAACATTTGGGACCTGAGA
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000049474.9
CDS CCA 90 bp TCTGAACTTCAAACTCCGAGGCCACATGCCAATGCCCCTCCTCGTTaGGGTACAACATCACAACGTCAAAAGCAGAAGCCGTGGCAACAA +
Preference number: 5 (lower is better)
Translates to: SELQTPRPHANAPPR*GTTSQRQKQKPWQQ
Trigger: TTGTTGCCACGGCTTCTGCTTTTGACGTTGTGATGTTGTACCCCAACGAGGAGGGGCATTGGCATGTGGCCTCGGAGTTTGAAGTTCAGA
52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000049474.9
CDS-3UTR CAA 90 bp CCCCCAGCCGGGGGAAATAAACCAGACTACACAGGGCAGAGGAAGACTTCAAACCTGTACACCAGGATCTaGTTTCCTTCATACACCCAT +
Preference number: 5 (lower is better)
Translates to: PPAGGNKPDYTGQRKTSNLYTRI*FPSYTH
Trigger: ATGGGTGTATGAAGGAAACAAGATCCTGGTGTACAG...GTTTGAAGTCTTCCTCTGCCCTGTGTAGTCTGGTTTATTTCCCCCGGCTGGGGG
51% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 1 transcripts:
ENSMUST00000049474.9
CDS GCA 90 bp ATGGGCTTTTCTTGGCTCAGCGCAAGGGCTTGTATTCTTGCGTCATaGTCAAAACGAAAGATAGGGAACCTTCCGGTTCTCAGGTCCCAA +
Preference number: 5 (lower is better)
Translates to: MGFSWLSARACILAS*SKRKIGNLPVLRSQ
Trigger: TTGGGACCTGAGAACCGGAAGGTTCCCTATCTTTCGTTTTGAGCATGACGCAAGAATACAAGCCCTTGCGCTGAGCCAAGAAAAGCCCAT
50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000049474.9
CDS GCA 90 bp GGCAACAATGGGCTTTTCTTGGCTCAGCGCAAGGGCTTGTATTCTTaGGTCATGCTCAAAACGAAAGATAGGGAACCTTCCGGTTCTCAG +
Preference number: 5 (lower is better)
Translates to: GNNGLFLAQRKGLYS*VMLKTKDREPSGSQ
Trigger: CTGAGAACCGGAAGGTTCCCTATCTTTCGTTTTGAGCATGACGCAAGAATACAAGCCCTTGCGCTGAGCCAAGAAAAGCCCATTGTTGCC
50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000049474.9
CDS TCA 90 bp GAGCACACAGTCCCAGCTCTCTTCTGTTCAGATACTGGAATATATTaGTGGCCAGTTCGTAAGGCAGACGGACATCAAAGAAGGGCACGT +
Preference number: 5 (lower is better)
Translates to: EHTVPALFCSDTGIY*WPVRKADGHQRRAR
Trigger: ACGTGCCCTTCTTTGATGTCCGTCTGCCTTACGAACTGGCCATCAATATATTCCAGTATCTGAACAGAAGAGAGCTGGGACTGTGTGCTC
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000049474.9
CDS CCA 72 bp TGGACGTATCCTTCCTGTCGCCTCCCCGGCCAGGCCTaGGCGCCGGGGGTCGGCCCGCGCCCTCCAGCAGCC +
Preference number: 6 (lower is better)
Translates to: WTYPSCRLPGQA*APGVGPRPPAA
Trigger: GGCTGCTGGAGGGCGCGGGCCGACCCCCGGCGCCCAGGCCTGGCCGGGGAGGCGACAGGAAGGATACGTCCA
78% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000049474.9
CDS GCA 72 bp CGTCGCCTCAGCGCCTGTGACTGCGCCAACTCCTCCTaGCAGTGCCGGCGGAACTCCTCCAGGTTGTGGTCG +
Preference number: 6 (lower is better)
Translates to: RRLSACDCANSS*QCRRNSSRLWS
Trigger: CGACCACAACCTGGAGGAGTTCCGCCGGCACTGGCAGGAGGAGTTGGCGCAGTCACAGGCGCTGAGGCGACG
68% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000049474.9
CDS TCA 72 bp GGCACGTCATCCAGCTCATTCAAGTCGCGGATGAGCTaGTCCACCAGCGGCTCGGGCTCCGTGGCGTCGCGG +
Preference number: 6 (lower is better)
Translates to: GTSSSSFKSRMS*STSGSGSVASR
Trigger: CCGCGACGCCACGGAGCCCGAGCCGCTGGTGGATCAGCTCATCCGCGACTTGAATGAGCTGGATGACGTGCC
67% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000049474.9
CDS GCA 72 bp GCCTCCACTGACAACCTTCCAGTCATCCATCTGGACTaGGGACACCCCCAGCTGATGGGCAGACAGCGACAG +
Preference number: 6 (lower is better)
Translates to: ASTDNLPVIHLD*GHPQLMGRQRQ
Trigger: CTGTCGCTGTCTGCCCATCAGCTGGGGGTGTCCGCAGTCCAGATGGATGACTGGAAGGTTGTCAGTGGAGGC
61% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000049474.9
CDS CCA 72 bp CGTCGGCCTTCAGCAGGTACACCAGATCCCCGGCTGTaGCTATTGCCACAGGGTACCTCCCAGTATTCGGAA +
Preference number: 6 (lower is better)
Translates to: RRPSAGTPDPRL*LLPQGTSQYSE
Trigger: TTCCGAATACTGGGAGGTACCCTGTGGCAATAGCCACAGCCGGGGATCTGGTGTACCTGCTGAAGGCCGACG
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000049474.9
CDS CAA 90 bp GGAGGGCTATCCCGGATGTTGACACAGGTAAAGTCTCCAAGTGCATaGCCCAGCTTCGAGAGGCAGCGCTCTGCTTCCAGGCTGTACACC +
Preference number: 6 (lower is better)
Translates to: GGLSRMLTQVKSPSA*PSFERQRSASRLYT
Trigger: GGTGTACAGCCTGGAAGCAGAGCGCTGCCTCTCGAAGCTGGGCAATGCACTTGGAGACTTTACCTGTGTCAACATCCGGGATAGCCCTCC
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000049474.9
CDS TCA 72 bp GGCAGGCTGGCCATAGACATAATGAAGGGTTCTGGCTaGGTCGTCGGCCTTCAGCAGGTACACCAGATCCCC +
Preference number: 6 (lower is better)
Translates to: GRLAIDIMKGSG*VVGLQQVHQIP
Trigger: GGGGATCTGGTGTACCTGCTGAAGGCCGACGACTCAGCCAGAACCCTTCATTATGTCTATGGCCAGCCTGCC
58% GC, longest homopolymer 4 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000049474.9
CDS TCA 72 bp GGAAAGACAGTGCGAGGTCATAGCTGTATCCAGCCATaGTGTCACGGGGTAAGCGGCAGACAGGAAGGGGGC +
Preference number: 6 (lower is better)
Translates to: GKTVRGHSCIQP*CHGVSGRQEGG
Trigger: GCCCCCTTCCTGTCTGCCGCTTACCCCGTGACATCATGGCTGGATACAGCTATGACCTCGCACTGTCTTTCC
58% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000049474.9
CDS CCA 72 bp CCCATCCTAGACTCTTCACTCCAAAGGCAACCTGGCTaGCTGAGACATCCAGACATGTGGCAGGCTGGCCAT +
Preference number: 6 (lower is better)
Translates to: PILDSSLQRQPG*LRHPDMWQAGH
Trigger: ATGGCCAGCCTGCCACATGTCTGGATGTCTCAGCCAGCCAGGTTGCCTTTGGAGTGAAGAGTCTAGGATGGG
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000049474.9
CDS CAA 72 bp GCGTCGGGAACATGCTCCAGCTCGCTCACGGCACCTTaGCGATTCTTCCAGTTGGCTCTTAATGTGTGCTCC +
Preference number: 6 (lower is better)
Translates to: ASGTCSSSLTAP*RFFQLALNVCS
Trigger: GGAGCACACATTAAGAGCCAACTGGAAGAATCGCAAAGGTGCCGTGAGCGAGCTGGAGCATGTTCCCGACGC
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000049474.9
CDS CAA 72 bp CCGCTGACCATGAGGTTGGGAGGGCTATCCCGGATGTaGACACAGGTAAAGTCTCCAAGTGCATTGCCCAGC +
Preference number: 6 (lower is better)
Translates to: PLTMRLGGLSRM*TQVKSPSALPS
Trigger: GCTGGGCAATGCACTTGGAGACTTTACCTGTGTCAACATCCGGGATAGCCCTCCCAACCTCATGGTCAGCGG
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000049474.9
CDS CAA 90 bp CACAAAACAGCGTCGGGAACATGCTCCAGCTCGCTCACGGCACCTTaGCGATTCTTCCAGTTGGCTCTTAATGTGTGCTCCTTGGCGAGG +
Preference number: 6 (lower is better)
Translates to: HKTASGTCSSSLTAP*RFFQLALNVCSLAR
Trigger: CCTCGCCAAGGAGCACACATTAAGAGCCAACTGGAAGAATCGCAAAGGTGCCGTGAGCGAGCTGGAGCATGTTCCCGACGCTGTTTTGTG
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000049474.9
CDS TCA 72 bp TCCCATCCTCGTAAGCCGCCACTGCCAGCGAGCTGTTaGTCCTCACAAAGGAGACATATGGCTGCATTCCAG +
Preference number: 6 (lower is better)
Translates to: SHPRKPPLPASC*SSQRRHMAAFQ
Trigger: CTGGAATGCAGCCATATGTCTCCTTTGTGAGGATCAACAGCTCGCTGGCAGTGGCGGCTTACGAGGATGGGA
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000049474.9
CDS GCA 72 bp CGTCGGGAACATGCTCCAGCTCGCTCACGGCACCTTTaGGATTCTTCCAGTTGGCTCTTAATGTGTGCTCCT +
Preference number: 6 (lower is better)
Translates to: RREHAPARSRHL*DSSSWLLMCAP
Trigger: AGGAGCACACATTAAGAGCCAACTGGAAGAATCGCAAAGGTGCCGTGAGCGAGCTGGAGCATGTTCCCGACG
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000049474.9
CDS GCA 72 bp TCCAAGTGCATTGCCCAGCTTCGAGAGGCAGCGCTCTaGTTCCAGGCTGTACACCAGGATCTTGTTTCCTTC +
Preference number: 6 (lower is better)
Translates to: SKCIAQLREAAL*FQAVHQDLVSF
Trigger: GAAGGAAACAAGATCCTGGTGTACAGCCTGGAAGCAGAGCGCTGCCTCTCGAAGCTGGGCAATGCACTTGGA
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000049474.9
CDS GCA 72 bp GCTATCCCGGATGTTGACACAGGTAAAGTCTCCAAGTaGATTGCCCAGCTTCGAGAGGCAGCGCTCTGCTTC +
Preference number: 6 (lower is better)
Translates to: AIPDVDTGKVSK*IAQLREAALCF
Trigger: GAAGCAGAGCGCTGCCTCTCGAAGCTGGGCAATGCACTTGGAGACTTTACCTGTGTCAACATCCGGGATAGC
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000049474.9
CDS CCA 72 bp CCAGCTCGCTCACGGCACCTTTGCGATTCTTCCAGTTaGCTCTTAATGTGTGCTCCTTGGCGAGGCACTCTT +
Preference number: 6 (lower is better)
Translates to: PARSRHLCDSSS*LLMCAPWRGTL
Trigger: AAGAGTGCCTCGCCAAGGAGCACACATTAAGAGCCAACTGGAAGAATCGCAAAGGTGCCGTGAGCGAGCTGG
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000049474.9
CDS CCA 72 bp CAAACTCCGAGGCCACATGCCAATGCCCCTCCTCGTTaGGGTACAACATCACAACGTCAAAAGCAGAAGCCG +
Preference number: 6 (lower is better)
Translates to: QTPRPHANAPPR*GTTSQRQKQKP
Trigger: CGGCTTCTGCTTTTGACGTTGTGATGTTGTACCCCAACGAGGAGGGGCATTGGCATGTGGCCTCGGAGTTTG
56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000049474.9
CDS CAA 72 bp TCCAGCTCGCTCACGGCACCTTTGCGATTCTTCCAGTaGGCTCTTAATGTGTGCTCCTTGGCGAGGCACTCT +
Preference number: 6 (lower is better)
Translates to: SSSLTAPLRFFQ*ALNVCSLARHS
Trigger: AGAGTGCCTCGCCAAGGAGCACACATTAAGAGCCAACTGGAAGAATCGCAAAGGTGCCGTGAGCGAGCTGGA
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000049474.9
CDS CAA 72 bp CTCACTCTCCTGTCCATGTTGCCGCTGACCATGAGGTaGGGAGGGCTATCCCGGATGTTGACACAGGTAAAG +
Preference number: 6 (lower is better)
Translates to: LTLLSMLPLTMR*GGLSRMLTQVK
Trigger: CTTTACCTGTGTCAACATCCGGGATAGCCCTCCCAACCTCATGGTCAGCGGCAACATGGACAGGAGAGTGAG
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000049474.9
CDS CAA 90 bp GGAACATGCTCCAGCTCGCTCACGGCACCTTTGCGATTCTTCCAGTaGGCTCTTAATGTGTGCTCCTTGGCGAGGCACTCTTGCAAGATG +
Preference number: 6 (lower is better)
Translates to: GTCSSSLTAPLRFFQ*ALNVCSLARHSCKM
Trigger: CATCTTGCAAGAGTGCCTCGCCAAGGAGCACACATTAAGAGCCAACTGGAAGAATCGCAAAGGTGCCGTGAGCGAGCTGGAGCATGTTCC
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000049474.9
CDS CAA 90 bp AGTCGTCGGCCTTCAGCAGGTACACCAGATCCCCGGCTGTGGCTATaGCCACAGGGTACCTCCCAGTATTCGGAACTATTTCAAGGTAGT +
Preference number: 6 (lower is better)
Translates to: SRRPSAGTPDPRLWL*PQGTSQYSELFQGS
Trigger: ACTACCTTGAAATAGTTCCGAATACTGGGAGGTACCCTGTGGCAATAGCCACAGCCGGGGATCTGGTGTACCTGCTGAAGGCCGACGACT
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000049474.9
CDS TCA 72 bp TCCCCTGACGTGTATCCAGCAATGACCACACCATCGTaGGAACGCACGTCACACAAAACAGCGTCGGGAACA +
Preference number: 6 (lower is better)
Translates to: SPDVYPAMTTPS*ERTSHKTASGT
Trigger: TGTTCCCGACGCTGTTTTGTGTGACGTGCGTTCTCACGATGGTGTGGTCATTGCTGGATACACGTCAGGGGA
54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000049474.9
CDS GCA 72 bp CTTCAGCAGGTACACCAGATCCCCGGCTGTGGCTATTaGCACAGGGTACCTCCCAGTATTCGGAACTATTTC +
Preference number: 6 (lower is better)
Translates to: LQQVHQIPGCGY*HRVPPSIRNYF
Trigger: GAAATAGTTCCGAATACTGGGAGGTACCCTGTGGCAATAGCCACAGCCGGGGATCTGGTGTACCTGCTGAAG
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000049474.9
CDS CCA 72 bp CAAAGGCAACCTGGCTGGCTGAGACATCCAGACATGTaGCAGGCTGGCCATAGACATAATGAAGGGTTCTGG +
Preference number: 6 (lower is better)
Translates to: QRQPGWLRHPDM*QAGHRHNEGFW
Trigger: CCAGAACCCTTCATTATGTCTATGGCCAGCCTGCCACATGTCTGGATGTCTCAGCCAGCCAGGTTGCCTTTG
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000049474.9
CDS CAA 72 bp CCTTCAGCAGGTACACCAGATCCCCGGCTGTGGCTATaGCCACAGGGTACCTCCCAGTATTCGGAACTATTT +
Preference number: 6 (lower is better)
Translates to: PSAGTPDPRLWL*PQGTSQYSELF
Trigger: AAATAGTTCCGAATACTGGGAGGTACCCTGTGGCAATAGCCACAGCCGGGGATCTGGTGTACCTGCTGAAGG
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000049474.9
CDS CAA 90 bp TCATGGATCCTCACTCTCCTGTCCATGTTGCCGCTGACCATGAGGTaGGGAGGGCTATCCCGGATGTTGACACAGGTAAAGTCTCCAAGT +
Preference number: 6 (lower is better)
Translates to: SWILTLLSMLPLTMR*GGLSRMLTQVKSPS
Trigger: ACTTGGAGACTTTACCTGTGTCAACATCCGGGATAGCCCTCCCAACCTCATGGTCAGCGGCAACATGGACAGGAGAGTGAGGATCCATGA
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000049474.9
CDS GCA 72 bp ACAGCACCTCGTCTTCAGCAATCACCTTCCATGTCTTaGTCACCTGAGCACACAGTCCCAGCTCTCTTCTGT +
Preference number: 6 (lower is better)
Translates to: TAPRLQQSPSMS*SPEHTVPALFC
Trigger: ACAGAAGAGAGCTGGGACTGTGTGCTCAGGTGAGCAAGACATGGAAGGTGATTGCTGAAGACGAGGTGCTGT
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000049474.9
CDS GCA 72 bp AGCGAGCTGTTGATCCTCACAAAGGAGACATATGGCTaGATTCCAGGATCCTCCTCCTCAGACTCAGACTCC +
Preference number: 6 (lower is better)
Translates to: SELLILTKETYG*IPGSSSSDSDS
Trigger: GGAGTCTGAGTCTGAGGAGGAGGATCCTGGAATGCAGCCATATGTCTCCTTTGTGAGGATCAACAGCTCGCT
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000049474.9
CDS GCA 72 bp GCACCTTTGCGATTCTTCCAGTTGGCTCTTAATGTGTaGTCCTTGGCGAGGCACTCTTGCAAGATGAGCTTC +
Preference number: 6 (lower is better)
Translates to: APLRFFQLALNV*SLARHSCKMSF
Trigger: GAAGCTCATCTTGCAAGAGTGCCTCGCCAAGGAGCACACATTAAGAGCCAACTGGAAGAATCGCAAAGGTGC
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000049474.9
CDS GCA 72 bp CCAAATGTTAAGGATCCCATCCTCGTAAGCCGCCACTaGCAGCGAGCTGTTGATCCTCACAAAGGAGACATA +
Preference number: 6 (lower is better)
Translates to: PNVKDPILVSRH*QRAVDPHKGDI
Trigger: TATGTCTCCTTTGTGAGGATCAACAGCTCGCTGGCAGTGGCGGCTTACGAGGATGGGATCCTTAACATTTGG
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000049474.9
CDS CCA 72 bp TCAAAAGCAGAAGCCGTGGCAACAATGGGCTTTTCTTaGCTCAGCGCAAGGGCTTGTATTCTTGCGTCATGC +
Preference number: 6 (lower is better)
Translates to: SKAEAVATMGFS*LSARACILASC
Trigger: GCATGACGCAAGAATACAAGCCCTTGCGCTGAGCCAAGAAAAGCCCATTGTTGCCACGGCTTCTGCTTTTGA
51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000049474.9
CDS CAA 72 bp GTCAAAAGCAGAAGCCGTGGCAACAATGGGCTTTTCTaGGCTCAGCGCAAGGGCTTGTATTCTTGCGTCATG +
Preference number: 6 (lower is better)
Translates to: VKSRSRGNNGLF*AQRKGLYSCVM
Trigger: CATGACGCAAGAATACAAGCCCTTGCGCTGAGCCAAGAAAAGCCCATTGTTGCCACGGCTTCTGCTTTTGAC
51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000049474.9
CDS CAA 72 bp AGGCAGCGCTCTGCTTCCAGGCTGTACACCAGGATCTaGTTTCCTTCATACACCCATCCTAGACTCTTCACT +
Preference number: 6 (lower is better)
Translates to: RQRSASRLYTRI*FPSYTHPRLFT
Trigger: AGTGAAGAGTCTAGGATGGGTGTATGAAGGAAACAAGATCCTGGTGTACAGCCTGGAAGCAGAGCGCTGCCT
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000049474.9
CDS CAA 90 bp AGAAGCCGTGGCAACAATGGGCTTTTCTTGGCTCAGCGCAAGGGCTaGTATTCTTGCGTCATGCTCAAAACGAAAGATAGGGAACCTTCC +
Preference number: 6 (lower is better)
Translates to: RSRGNNGLFLAQRKG*YSCVMLKTKDREPS
Trigger: GGAAGGTTCCCTATCTTTCGTTTTGAGCATGACGCAAGAATACAAGCCCTTGCGCTGAGCCAAGAAAAGCCCATTGTTGCCACGGCTTCT
50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000049474.9
CDS GCA 72 bp TCTTGGCTCAGCGCAAGGGCTTGTATTCTTGCGTCATaGTCAAAACGAAAGATAGGGAACCTTCCGGTTCTC +
Preference number: 6 (lower is better)
Translates to: SWLSARACILAS*SKRKIGNLPVL
Trigger: GAGAACCGGAAGGTTCCCTATCTTTCGTTTTGAGCATGACGCAAGAATACAAGCCCTTGCGCTGAGCCAAGA
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000049474.9
CDS GCA 72 bp GGGCTTTTCTTGGCTCAGCGCAAGGGCTTGTATTCTTaGGTCATGCTCAAAACGAAAGATAGGGAACCTTCC +
Preference number: 6 (lower is better)
Translates to: GLFLAQRKGLYS*VMLKTKDREPS
Trigger: GGAAGGTTCCCTATCTTTCGTTTTGAGCATGACGCAAGAATACAAGCCCTTGCGCTGAGCCAAGAAAAGCCC
50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000049474.9
CDS CCA 72 bp ACATCACAACGTCAAAAGCAGAAGCCGTGGCAACAATaGGCTTTTCTTGGCTCAGCGCAAGGGCTTGTATTC +
Preference number: 6 (lower is better)
Translates to: TSQRQKQKPWQQ*AFLGSAQGLVF
Trigger: GAATACAAGCCCTTGCGCTGAGCCAAGAAAAGCCCATTGTTGCCACGGCTTCTGCTTTTGACGTTGTGATGT
50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000049474.9
CDS CAA 72 bp GGCAACAATGGGCTTTTCTTGGCTCAGCGCAAGGGCTaGTATTCTTGCGTCATGCTCAAAACGAAAGATAGG +
Preference number: 6 (lower is better)
Translates to: GNNGLFLAQRKG*YSCVMLKTKDR
Trigger: CCTATCTTTCGTTTTGAGCATGACGCAAGAATACAAGCCCTTGCGCTGAGCCAAGAAAAGCCCATTGTTGCC
49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000049474.9
CDS TCA 72 bp GTCCCAGCTCTCTTCTGTTCAGATACTGGAATATATTaGTGGCCAGTTCGTAAGGCAGACGGACATCAAAGA +
Preference number: 6 (lower is better)
Translates to: VPALFCSDTGIY*WPVRKADGHQR
Trigger: TCTTTGATGTCCGTCTGCCTTACGAACTGGCCATCAATATATTCCAGTATCTGAACAGAAGAGAGCTGGGAC
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000049474.9