RADAR | Search for sensor designs | Human genes | Mouse genes | Code

Pregenerated sensors for FBXW7 (Mus musculus)

Ensembl gene IDs: ENSMUSG00000028086

Ensembl transcript IDs: ENSMUST00000029727.8, ENSMUST00000107675.8, ENSMUST00000107678.8, ENSMUST00000107679.8

Found 252 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).

Type Sensor Details
3UTR TCA 90 bp CGTCACTGCAGAGCGAATTCCTCTCACGTCAGTCACTCAGAGCAATaGAACTGTAACAGTTGTTTTCCCCAATACTGTAAGATGCTACGA +
Preference number: 1 (lower is better)
Translates to: RHCRANSSHVSHSEQ*NCNSCFPQYCKMLR
Trigger: TCGTAGCATCTTACAGTATTGGGGAAAACAACTGTTACAGTTTCATTGCTCTGAGTGACTGACGTGAGAGGAATTCGCTCTGCAGTGACG
46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000107675.8
ENSMUST00000107678.8
ENSMUST00000107679.8
3UTR TCA 90 bp ATATCCATCTCAGGACTCACACAACCCAGGACAACTTGCCACCTTTaGGCAACATATGCATTGAAGAGTAGAAGCAACAGTAAAGAGATA +
Preference number: 1 (lower is better)
Translates to: ISISGLTQPRTTCHL*ATYALKSRSNSKEI
Trigger: TATCTCTTTACTGTTGCTTCTACTCTTCAATGCATATGTTGCTCAAAGGTGGCAAGTTGTCCTGGGTTGTGTGAGTCCTGAGATGGATAT
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000107675.8
ENSMUST00000107678.8
ENSMUST00000107679.8
3UTR-3UTR GCA 90 bp GAAGATAAGCAGCCCGTGTTTGGATATTACTGCCACTCCTTTCTAGGTGACGGTGTCGTCTTGCCAAGCTaGCCCTCAGTCACAAGTGAG +
Preference number: 2 (lower is better)
Translates to: EDKQPVFGYYCHSFLGDGVVLPS*PSVTSE
Trigger: CTCACTTGTGACTGAGGGGCAGCTTGGCAAGACGAC...ACCGTCACCTAGAAAGGAGTGGCAGTAATATCCAAACACGGGCTGCTTATCTTC
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000107675.8
ENSMUST00000107678.8
ENSMUST00000107679.8
3UTR CAA 90 bp CTTTGCGAGATGCGACAGCTGCCGCCTCCTGTCAGTTACGGTCTCTaGTCTCTTCTTGCCTTCTTAGTCTGTAGGTCTTTTCAGTCTGTT +
Preference number: 2 (lower is better)
Translates to: LCEMRQLPPPVSYGL*SLLAFLVCRSFQSV
Trigger: AACAGACTGAAAAGACCTACAGACTAAGAAGGCAAGAAGAGACAAGAGACCGTAACTGACAGGAGGCGGCAGCTGTCGCATCTCGCAAAG
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000107675.8
ENSMUST00000107678.8
ENSMUST00000107679.8
3UTR-3UTR GCA 90 bp GAAGATAAGCAGCCCGTGTTTGGATATTACTGCCACTCCTTTCTAGGTGACGGTCCCAAGCCAACATCCTaGACCACTGAGTACAAGGGA +
Preference number: 2 (lower is better)
Translates to: EDKQPVFGYYCHSFLGDGPKPTS*TTEYKG
Trigger: TCCCTTGTACTCAGTGGTGCAGGATGTTGGCTTGGG...ACCGTCACCTAGAAAGGAGTGGCAGTAATATCCAAACACGGGCTGCTTATCTTC
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000107675.8
ENSMUST00000107678.8
ENSMUST00000107679.8
3UTR-3UTR GCA 90 bp GCATCAAGAATTATATCCATCTCAGGACTCACACAACCCAGGACAACTTGCCACCCCAAGCCAACATCCTaGACCACTGAGTACAAGGGA +
Preference number: 2 (lower is better)
Translates to: ASRIISISGLTQPRTTCHPKPTS*TTEYKG
Trigger: TCCCTTGTACTCAGTGGTGCAGGATGTTGGCTTGGG...GTGGCAAGTTGTCCTGGGTTGTGTGAGTCCTGAGATGGATATAATTCTTGATGC
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000107675.8
ENSMUST00000107678.8
ENSMUST00000107679.8
3UTR-3UTR GCA 90 bp GCATCAAGAATTATATCCATCTCAGGACTCACACAACCCAGGACAACTTGCCACTTTAGAGAGTCGTCTTaGCAAGCTGCCCCTCAGTCA +
Preference number: 2 (lower is better)
Translates to: ASRIISISGLTQPRTTCHFRESS*QAAPQS
Trigger: TGACTGAGGGGCAGCTTGGCAAGACGACTCTCTAAA...GTGGCAAGTTGTCCTGGGTTGTGTGAGTCCTGAGATGGATATAATTCTTGATGC
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000107675.8
ENSMUST00000107678.8
ENSMUST00000107679.8
3UTR-3UTR TCA 90 bp GCATCAAGAATTATATCCATCTCAGGACTCACACAACCCAGGACAACTTGCCACTGTAGCTCTGCTCAATaGCCACTGGAGAAGAAAACA +
Preference number: 2 (lower is better)
Translates to: ASRIISISGLTQPRTTCHCSSAQ*PLEKKT
Trigger: TGTTTTCTTCTCCAGTGGTCATTGAGCAGAGCTACA...GTGGCAAGTTGTCCTGGGTTGTGTGAGTCCTGAGATGGATATAATTCTTGATGC
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000107675.8
ENSMUST00000107678.8
ENSMUST00000107679.8
3UTR-3UTR TCA 90 bp GCATCAAGAATTATATCCATCTCAGGACTCACACAACCCAGGACAACTTGCCACTCCACTTCAGAAAAATaGCGGTTTGTTGCAGATGCT +
Preference number: 2 (lower is better)
Translates to: ASRIISISGLTQPRTTCHSTSEK*RFVADA
Trigger: AGCATCTGCAACAAACCGTCATTTTTCTGAAGTGGA...GTGGCAAGTTGTCCTGGGTTGTGTGAGTCCTGAGATGGATATAATTCTTGATGC
44% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000107675.8
ENSMUST00000107678.8
ENSMUST00000107679.8
3UTR-3UTR TCA 90 bp GCATCAAGAATTATATCCATCTCAGGACTCACACAACCCAGGACAACTTGCCACCAGAGGCTAATACTGTaGTTGATTGACATTGGCAAT +
Preference number: 2 (lower is better)
Translates to: ASRIISISGLTQPRTTCHQRLIL*LIDIGN
Trigger: ATTGCCAATGTCAATCAATCACAGTATTAGCCTCTG...GTGGCAAGTTGTCCTGGGTTGTGTGAGTCCTGAGATGGATATAATTCTTGATGC
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000107675.8
ENSMUST00000107678.8
ENSMUST00000107679.8
3UTR-3UTR CCA 90 bp GAAGATAAGCAGCCCGTGTTTGGATATTACTGCCACTCCTTTCTAGGTGACGGTAAGAATAATTGCACCTaGTTGGATTTAGAGAGTCGT +
Preference number: 2 (lower is better)
Translates to: EDKQPVFGYYCHSFLGDGKNNCT*LDLESR
Trigger: ACGACTCTCTAAATCCAACCAGGTGCAATTATTCTT...ACCGTCACCTAGAAAGGAGTGGCAGTAATATCCAAACACGGGCTGCTTATCTTC
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000107675.8
ENSMUST00000107678.8
ENSMUST00000107679.8
3UTR-3UTR CCA 90 bp GCATCAAGAATTATATCCATCTCAGGACTCACACAACCCAGGACAACTTGCCACAAGAATAATTGCACCTaGTTGGATTTAGAGAGTCGT +
Preference number: 2 (lower is better)
Translates to: ASRIISISGLTQPRTTCHKNNCT*LDLESR
Trigger: ACGACTCTCTAAATCCAACCAGGTGCAATTATTCTT...GTGGCAAGTTGTCCTGGGTTGTGTGAGTCCTGAGATGGATATAATTCTTGATGC
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000107675.8
ENSMUST00000107678.8
ENSMUST00000107679.8
3UTR-3UTR CAA 90 bp GTTGGATTTAGAGAGTCGTCTTGCCAAGCTGCCCCTCAGTCACAAGTGAGGCCTGGTCTTTTCAGTCTGTaGTCCCAAGCCAACATCCTG +
Preference number: 3 (lower is better)
Translates to: VGFRESSCQAAPQSQVRPGLFSL*SQANIL
Trigger: CAGGATGTTGGCTTGGGACAACAGACTGAAAAGACC...AGGCCTCACTTGTGACTGAGGGGCAGCTTGGCAAGACGACTCTCTAAATCCAAC
52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000107675.8
ENSMUST00000107678.8
ENSMUST00000107679.8
3UTR-3UTR CAA 90 bp GTTGGATTTAGAGAGTCGTCTTGCCAAGCTGCCCCTCAGTCACAAGTGAGGCCTAGGGTAGGGAGTATATaGTCTACACAGTTGGACAAA +
Preference number: 3 (lower is better)
Translates to: VGFRESSCQAAPQSQVRPRVGSI*STQLDK
Trigger: TTTGTCCAACTGTGTAGACAATATACTCCCTACCCT...AGGCCTCACTTGTGACTGAGGGGCAGCTTGGCAAGACGACTCTCTAAATCCAAC
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000107675.8
ENSMUST00000107678.8
ENSMUST00000107679.8
3UTR-3UTR CAA 90 bp GAAGATAAGCAGCCCGTGTTTGGATATTACTGCCACTCCTTTCTAGGTGACGGTGGTCTTTTCAGTCTGTaGTCCCAAGCCAACATCCTG +
Preference number: 3 (lower is better)
Translates to: EDKQPVFGYYCHSFLGDGGLFSL*SQANIL
Trigger: CAGGATGTTGGCTTGGGACAACAGACTGAAAAGACC...ACCGTCACCTAGAAAGGAGTGGCAGTAATATCCAAACACGGGCTGCTTATCTTC
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000107675.8
ENSMUST00000107678.8
ENSMUST00000107679.8
3UTR TCA 72 bp GAGTACAGTACAGGGGTGGGACAACGACCCCGGATTTaGAGACCTACTTCTAGCACCAGCATCAAGAATTAT +
Preference number: 3 (lower is better)
Translates to: EYSTGVGQRPRI*RPTSSTSIKNY
Trigger: ATAATTCTTGATGCTGGTGCTAGAAGTAGGTCTTCAAATCCGGGGTCGTTGTCCCACCCCTGTACTGTACTC
49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000107675.8
ENSMUST00000107678.8
ENSMUST00000107679.8
3UTR CCA 72 bp TTTCTTTCATTTAGCAGCATAAATAAGTTTGGCCACTaGGAGTACAGTACAGGGGTGGGACAACGACCCCGG +
Preference number: 3 (lower is better)
Translates to: FLSFSSINKFGH*EYSTGVGQRPR
Trigger: CCGGGGTCGTTGTCCCACCCCTGTACTGTACTCCCAGTGGCCAAACTTATTTATGCTGCTAAATGAAAGAAA
49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000107675.8
ENSMUST00000107678.8
ENSMUST00000107679.8
3UTR-3UTR CAA 90 bp GAAGATAAGCAGCCCGTGTTTGGATATTACTGCCACTCCTTTCTAGGTGACGGTAGGGTAGGGAGTATATaGTCTACACAGTTGGACAAA +
Preference number: 3 (lower is better)
Translates to: EDKQPVFGYYCHSFLGDGRVGSI*STQLDK
Trigger: TTTGTCCAACTGTGTAGACAATATACTCCCTACCCT...ACCGTCACCTAGAAAGGAGTGGCAGTAATATCCAAACACGGGCTGCTTATCTTC
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000107675.8
ENSMUST00000107678.8
ENSMUST00000107679.8
3UTR-3UTR CAA 90 bp GAAGATAAGCAGCCCGTGTTTGGATATTACTGCCACTCCTTTCTAGGTGACGGTAATAATTGCACCTGGTaGGATTTAGAGAGTCGTCTT +
Preference number: 3 (lower is better)
Translates to: EDKQPVFGYYCHSFLGDGNNCTW*DLESRL
Trigger: AAGACGACTCTCTAAATCCAACCAGGTGCAATTATT...ACCGTCACCTAGAAAGGAGTGGCAGTAATATCCAAACACGGGCTGCTTATCTTC
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000107675.8
ENSMUST00000107678.8
ENSMUST00000107679.8
3UTR-3UTR CAA 90 bp CTTCTTGCCTTCTTAGTCTGTAGGTCTTTTCAGTCTGTTGTCCCAAGCCAACATAGGGTAGGGAGTATATaGTCTACACAGTTGGACAAA +
Preference number: 3 (lower is better)
Translates to: LLAFLVCRSFQSVVPSQHRVGSI*STQLDK
Trigger: TTTGTCCAACTGTGTAGACAATATACTCCCTACCCT...ATGTTGGCTTGGGACAACAGACTGAAAAGACCTACAGACTAAGAAGGCAAGAAG
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000107675.8
ENSMUST00000107678.8
ENSMUST00000107679.8
3UTR-3UTR CAA 90 bp GCATCAAGAATTATATCCATCTCAGGACTCACACAACCCAGGACAACTTGCCACAATAATTGCACCTGGTaGGATTTAGAGAGTCGTCTT +
Preference number: 3 (lower is better)
Translates to: ASRIISISGLTQPRTTCHNNCTW*DLESRL
Trigger: AAGACGACTCTCTAAATCCAACCAGGTGCAATTATT...GTGGCAAGTTGTCCTGGGTTGTGTGAGTCCTGAGATGGATATAATTCTTGATGC
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000107675.8
ENSMUST00000107678.8
ENSMUST00000107679.8
3UTR TCA 72 bp CCACTTCAGAAAAATGACGGTTTGTTGCAGATGCTCTaGTTAGAAGATAAGCAGCCCGTGTTTGGATATTAC +
Preference number: 3 (lower is better)
Translates to: PLQKNDGLLQML*LEDKQPVFGYY
Trigger: GTAATATCCAAACACGGGCTGCTTATCTTCTAATCAGAGCATCTGCAACAAACCGTCATTTTTCTGAAGTGG
42% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000107675.8
ENSMUST00000107678.8
ENSMUST00000107679.8
CDS-3UTR TCA 90 bp GTTGGATTTAGAGAGTCGTCTTGCCAAGCTGCCCCTCAGTCACAAGTGAGGCCTCTCCTGCCATCATACTaGACGCAGCGGACCGCTGCT +
Preference number: 4 (lower is better)
Translates to: VGFRESSCQAAPQSQVRPLLPSY*TQRTAA
Trigger: AGCAGCGGTCCGCTGCGTTCAGTATGATGGCAGGAG...AGGCCTCACTTGTGACTGAGGGGCAGCTTGGCAAGACGACTCTCTAAATCCAAC
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000107675.8
ENSMUST00000107678.8
ENSMUST00000107679.8
CDS-3UTR TCA 90 bp GTTGGATTTAGAGAGTCGTCTTGCCAAGCTGCCCCTCAGTCACAAGTGAGGCCTCAGGTCACAGCGCTCTaGTGCTTGCTGGGACCTTGC +
Preference number: 4 (lower is better)
Translates to: VGFRESSCQAAPQSQVRPQVTAL*CLLGPC
Trigger: GCAAGGTCCCAGCAAGCATCAGAGCGCTGTGACCTG...AGGCCTCACTTGTGACTGAGGGGCAGCTTGGCAAGACGACTCTCTAAATCCAAC
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000107675.8
ENSMUST00000107678.8
ENSMUST00000107679.8
CDS-3UTR TCA 90 bp GAAGATAAGCAGCCCGTGTTTGGATATTACTGCCACTCCTTTCTAGGTGACGGTGGAGAGGAGAGCTGGTaGGCGGGCAGGTCCGAGACA +
Preference number: 4 (lower is better)
Translates to: EDKQPVFGYYCHSFLGDGGEESW*AGRSET
Trigger: TGTCTCGGACCTGCCCGCTCACCAGCTCTCCTCTCC...ACCGTCACCTAGAAAGGAGTGGCAGTAATATCCAAACACGGGCTGCTTATCTTC
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000107678.8
ENSMUST00000107679.8
CDS-3UTR CCA 90 bp GTTGGATTTAGAGAGTCGTCTTGCCAAGCTGCCCCTCAGTCACAAGTGAGGCCTTCTCGCTTGCTGCTGTaGATCCTCCTCAACCACGCG +
Preference number: 4 (lower is better)
Translates to: VGFRESSCQAAPQSQVRPSRLLL*ILLNHA
Trigger: CGCGTGGTTGAGGAGGATCCACAGCAGCAAGCGAGA...AGGCCTCACTTGTGACTGAGGGGCAGCTTGGCAAGACGACTCTCTAAATCCAAC
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000107678.8
ENSMUST00000107679.8
CDS-3UTR TCA 90 bp GTTGGATTTAGAGAGTCGTCTTGCCAAGCTGCCCCTCAGTCACAAGTGAGGCCTGTGTGCTCCTCCTCTTaGTGTCTCGCTTGCTGCTGT +
Preference number: 4 (lower is better)
Translates to: VGFRESSCQAAPQSQVRPVCSSS*CLACCC
Trigger: ACAGCAGCAAGCGAGACATCAAGAGGAGGAGCACAC...AGGCCTCACTTGTGACTGAGGGGCAGCTTGGCAAGACGACTCTCTAAATCCAAC
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000107678.8
ENSMUST00000107679.8
CDS-3UTR GCA 90 bp GTTGGATTTAGAGAGTCGTCTTGCCAAGCTGCCCCTCAGTCACAAGTGAGGCCTCCCTTGCCCATTGGCTaGTCTCAGGTCCCCAAAAGT +
Preference number: 4 (lower is better)
Translates to: VGFRESSCQAAPQSQVRPPLPIG*SQVPKS
Trigger: ACTTTTGGGGACCTGAGAGCAGCCAATGGGCAAGGG...AGGCCTCACTTGTGACTGAGGGGCAGCTTGGCAAGACGACTCTCTAAATCCAAC
54% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 3 transcripts:
ENSMUST00000107675.8
ENSMUST00000107678.8
ENSMUST00000107679.8
CDS-3UTR CCA 90 bp GTTGGATTTAGAGAGTCGTCTTGCCAAGCTGCCCCTCAGTCACAAGTGAGGCCTAGGCCTGTGGGTGGTTaGACAGATGTAATCCTCCGC +
Preference number: 4 (lower is better)
Translates to: VGFRESSCQAAPQSQVRPRPVGG*TDVILR
Trigger: GCGGAGGATTACATCTGTCCAACCACCCACAGGCCT...AGGCCTCACTTGTGACTGAGGGGCAGCTTGGCAAGACGACTCTCTAAATCCAAC
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000107675.8
ENSMUST00000107678.8
ENSMUST00000107679.8
CDS-3UTR TCA 90 bp GTTGGATTTAGAGAGTCGTCTTGCCAAGCTGCCCCTCAGTCACAAGTGAGGCCTATTTTCAGCCACTCTTaGAGGCCTGTGGGTGGTTGG +
Preference number: 4 (lower is better)
Translates to: VGFRESSCQAAPQSQVRPIFSHS*RPVGGW
Trigger: CCAACCACCCACAGGCCTTCAAGAGTGGCTGAAAAT...AGGCCTCACTTGTGACTGAGGGGCAGCTTGGCAAGACGACTCTCTAAATCCAAC
53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000107675.8
ENSMUST00000107678.8
ENSMUST00000107679.8
CDS-3UTR TCA 90 bp CTTCTTGCCTTCTTAGTCTGTAGGTCTTTTCAGTCTGTTGTCCCAAGCCAACATGGAGAGGAGAGCTGGTaGGCGGGCAGGTCCGAGACA +
Preference number: 4 (lower is better)
Translates to: LLAFLVCRSFQSVVPSQHGEESW*AGRSET
Trigger: TGTCTCGGACCTGCCCGCTCACCAGCTCTCCTCTCC...ATGTTGGCTTGGGACAACAGACTGAAAAGACCTACAGACTAAGAAGGCAAGAAG
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000107678.8
ENSMUST00000107679.8
CDS-3UTR TCA 90 bp GCATCAAGAATTATATCCATCTCAGGACTCACACAACCCAGGACAACTTGCCACCTCCTGCCATCATACTaGACGCAGCGGACCGCTGCT +
Preference number: 4 (lower is better)
Translates to: ASRIISISGLTQPRTTCHLLPSY*TQRTAA
Trigger: AGCAGCGGTCCGCTGCGTTCAGTATGATGGCAGGAG...GTGGCAAGTTGTCCTGGGTTGTGTGAGTCCTGAGATGGATATAATTCTTGATGC
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000107675.8
ENSMUST00000107678.8
ENSMUST00000107679.8
CDS-3UTR TCA 90 bp GCATCAAGAATTATATCCATCTCAGGACTCACACAACCCAGGACAACTTGCCACCAGGTCACAGCGCTCTaGTGCTTGCTGGGACCTTGC +
Preference number: 4 (lower is better)
Translates to: ASRIISISGLTQPRTTCHQVTAL*CLLGPC
Trigger: GCAAGGTCCCAGCAAGCATCAGAGCGCTGTGACCTG...GTGGCAAGTTGTCCTGGGTTGTGTGAGTCCTGAGATGGATATAATTCTTGATGC
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000107675.8
ENSMUST00000107678.8
ENSMUST00000107679.8
CDS-3UTR TCA 90 bp GAAGATAAGCAGCCCGTGTTTGGATATTACTGCCACTCCTTTCTAGGTGACGGTTTGTGTTTGAGGCCCTaGTCCGCCACACAACTCCCC +
Preference number: 4 (lower is better)
Translates to: EDKQPVFGYYCHSFLGDGLCLRP*SATQLP
Trigger: GGGGAGTTGTGTGGCGGATCAGGGCCTCAAACACAA...ACCGTCACCTAGAAAGGAGTGGCAGTAATATCCAAACACGGGCTGCTTATCTTC
52% GC, longest homopolymer 4 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000107675.8
ENSMUST00000107678.8
ENSMUST00000107679.8
CDS-3UTR TCA 90 bp GAAGATAAGCAGCCCGTGTTTGGATATTACTGCCACTCCTTTCTAGGTGACGGTCACCAGCTTTGTGTTTaGGGCCCTGATCCGCCACAC +
Preference number: 4 (lower is better)
Translates to: EDKQPVFGYYCHSFLGDGHQLCV*GPDPPH
Trigger: GTGTGGCGGATCAGGGCCTCAAACACAAAGCTGGTG...ACCGTCACCTAGAAAGGAGTGGCAGTAATATCCAAACACGGGCTGCTTATCTTC
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000107675.8
ENSMUST00000107678.8
ENSMUST00000107679.8
CDS-3UTR GCA 90 bp GTTGGATTTAGAGAGTCGTCTTGCCAAGCTGCCCCTCAGTCACAAGTGAGGCCTTTCGTCGTCTTTTGCTaGCCACAGAGAGCAGTTCCT +
Preference number: 4 (lower is better)
Translates to: VGFRESSCQAAPQSQVRPFVVFC*PQRAVP
Trigger: AGGAACTGCTCTCTGTGGGCAGCAAAAGACGACGAA...AGGCCTCACTTGTGACTGAGGGGCAGCTTGGCAAGACGACTCTCTAAATCCAAC
52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000107678.8
ENSMUST00000107679.8
CDS-3UTR CCA 90 bp GTTGGATTTAGAGAGTCGTCTTGCCAAGCTGCCCCTCAGTCACAAGTGAGGCCTGAGATGAAGTCTCGCTaGAACTGGGGCTCTATCACT +
Preference number: 4 (lower is better)
Translates to: VGFRESSCQAAPQSQVRPEMKSR*NWGSIT
Trigger: AGTGATAGAGCCCCAGTTCCAGCGAGACTTCATCTC...AGGCCTCACTTGTGACTGAGGGGCAGCTTGGCAAGACGACTCTCTAAATCCAAC
52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000107675.8
ENSMUST00000107678.8
ENSMUST00000107679.8
CDS-3UTR TCA 90 bp GTTGGATTTAGAGAGTCGTCTTGCCAAGCTGCCCCTCAGTCACAAGTGAGGCCTAGTTGTTGGTGTTGCTaGACATGGTACAAGGCCAGT +
Preference number: 4 (lower is better)
Translates to: VGFRESSCQAAPQSQVRPSCWCC*TWYKAS
Trigger: ACTGGCCTTGTACCATGTTCAGCAACACCAACAACT...AGGCCTCACTTGTGACTGAGGGGCAGCTTGGCAAGACGACTCTCTAAATCCAAC
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000107675.8
ENSMUST00000107678.8
ENSMUST00000107679.8
CDS-3UTR TCA 90 bp GTTGGATTTAGAGAGTCGTCTTGCCAAGCTGCCCCTCAGTCACAAGTGAGGCCTGTTCACAGCTGTCAATaGGCTCATCTAAAGCCAGCA +
Preference number: 4 (lower is better)
Translates to: VGFRESSCQAAPQSQVRPVHSCQ*AHLKPA
Trigger: TGCTGGCTTTAGATGAGCTCATTGACAGCTGTGAAC...AGGCCTCACTTGTGACTGAGGGGCAGCTTGGCAAGACGACTCTCTAAATCCAAC
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000107675.8
ENSMUST00000107678.8
ENSMUST00000107679.8
CDS-3UTR TCA 90 bp CTTCTTGCCTTCTTAGTCTGTAGGTCTTTTCAGTCTGTTGTCCCAAGCCAACATCTCCTGCCATCATACTaGACGCAGCGGACCGCTGCT +
Preference number: 4 (lower is better)
Translates to: LLAFLVCRSFQSVVPSQHLLPSY*TQRTAA
Trigger: AGCAGCGGTCCGCTGCGTTCAGTATGATGGCAGGAG...ATGTTGGCTTGGGACAACAGACTGAAAAGACCTACAGACTAAGAAGGCAAGAAG
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000107675.8
ENSMUST00000107678.8
ENSMUST00000107679.8
CDS-3UTR TCA 90 bp GTTGGATTTAGAGAGTCGTCTTGCCAAGCTGCCCCTCAGTCACAAGTGAGGCCTTGTCCTGTTAGCGTGTaGATACAATTCCCTGTCTCC +
Preference number: 4 (lower is better)
Translates to: VGFRESSCQAAPQSQVRPCPVSV*IQFPVS
Trigger: GGAGACAGGGAATTGTATTCACACGCTAACAGGACA...AGGCCTCACTTGTGACTGAGGGGCAGCTTGGCAAGACGACTCTCTAAATCCAAC
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000107675.8
ENSMUST00000107678.8
ENSMUST00000107679.8
CDS-3UTR TCA 90 bp GCATCAAGAATTATATCCATCTCAGGACTCACACAACCCAGGACAACTTGCCACTTGTGTTTGAGGCCCTaGTCCGCCACACAACTCCCC +
Preference number: 4 (lower is better)
Translates to: ASRIISISGLTQPRTTCHLCLRP*SATQLP
Trigger: GGGGAGTTGTGTGGCGGATCAGGGCCTCAAACACAA...GTGGCAAGTTGTCCTGGGTTGTGTGAGTCCTGAGATGGATATAATTCTTGATGC
51% GC, longest homopolymer 4 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000107675.8
ENSMUST00000107678.8
ENSMUST00000107679.8
CDS-3UTR TCA 90 bp GAAGATAAGCAGCCCGTGTTTGGATATTACTGCCACTCCTTTCTAGGTGACGGTGTGTGCTCCTCCTCTTaGTGTCTCGCTTGCTGCTGT +
Preference number: 4 (lower is better)
Translates to: EDKQPVFGYYCHSFLGDGVCSSS*CLACCC
Trigger: ACAGCAGCAAGCGAGACATCAAGAGGAGGAGCACAC...ACCGTCACCTAGAAAGGAGTGGCAGTAATATCCAAACACGGGCTGCTTATCTTC
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000107678.8
ENSMUST00000107679.8
CDS-3UTR CCA 90 bp GAAGATAAGCAGCCCGTGTTTGGATATTACTGCCACTCCTTTCTAGGTGACGGTAGGCCTGTGGGTGGTTaGACAGATGTAATCCTCCGC +
Preference number: 4 (lower is better)
Translates to: EDKQPVFGYYCHSFLGDGRPVGG*TDVILR
Trigger: GCGGAGGATTACATCTGTCCAACCACCCACAGGCCT...ACCGTCACCTAGAAAGGAGTGGCAGTAATATCCAAACACGGGCTGCTTATCTTC
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000107675.8
ENSMUST00000107678.8
ENSMUST00000107679.8
CDS-3UTR CCA 90 bp GTTGGATTTAGAGAGTCGTCTTGCCAAGCTGCCCCTCAGTCACAAGTGAGGCCTTTGAAGGCCTGTGGGTaGTTGGACAGATGTAATCCT +
Preference number: 4 (lower is better)
Translates to: VGFRESSCQAAPQSQVRPLKACG*LDRCNP
Trigger: AGGATTACATCTGTCCAACCACCCACAGGCCTTCAA...AGGCCTCACTTGTGACTGAGGGGCAGCTTGGCAAGACGACTCTCTAAATCCAAC
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000107675.8
ENSMUST00000107678.8
ENSMUST00000107679.8
CDS-3UTR CCA 90 bp GTTGGATTTAGAGAGTCGTCTTGCCAAGCTGCCCCTCAGTCACAAGTGAGGCCTATACGCACTCTTCCATaGGCTGTGTATGAAACCTGG +
Preference number: 4 (lower is better)
Translates to: VGFRESSCQAAPQSQVRPIRTLP*AVYETW
Trigger: CCAGGTTTCATACACAGCCCATGGAAGAGTGCGTAT...AGGCCTCACTTGTGACTGAGGGGCAGCTTGGCAAGACGACTCTCTAAATCCAAC
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000107675.8
ENSMUST00000107678.8
ENSMUST00000107679.8
CDS-3UTR CCA 90 bp GTTGGATTTAGAGAGTCGTCTTGCCAAGCTGCCCCTCAGTCACAAGTGAGGCCTAGGACGTGTAAACACTaGCCGGTCTCAATATCCCAA +
Preference number: 4 (lower is better)
Translates to: VGFRESSCQAAPQSQVRPRTCKH*PVSISQ
Trigger: TTGGGATATTGAGACCGGCCAGTGTTTACACGTCCT...AGGCCTCACTTGTGACTGAGGGGCAGCTTGGCAAGACGACTCTCTAAATCCAAC
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000107675.8
ENSMUST00000107678.8
ENSMUST00000107679.8
CDS-3UTR CCA 90 bp GCATCAAGAATTATATCCATCTCAGGACTCACACAACCCAGGACAACTTGCCACTCTCGCTTGCTGCTGTaGATCCTCCTCAACCACGCG +
Preference number: 4 (lower is better)
Translates to: ASRIISISGLTQPRTTCHSRLLL*ILLNHA
Trigger: CGCGTGGTTGAGGAGGATCCACAGCAGCAAGCGAGA...GTGGCAAGTTGTCCTGGGTTGTGTGAGTCCTGAGATGGATATAATTCTTGATGC
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000107678.8
ENSMUST00000107679.8
CDS-3UTR TCA 90 bp GTTGGATTTAGAGAGTCGTCTTGCCAAGCTGCCCCTCAGTCACAAGTGAGGCCTCAATTCTGTGCTGTCTaGTATACGCACTCTTCCATG +
Preference number: 4 (lower is better)
Translates to: VGFRESSCQAAPQSQVRPQFCAV*YTHSSM
Trigger: CATGGAAGAGTGCGTATATCAGACAGCACAGAATTG...AGGCCTCACTTGTGACTGAGGGGCAGCTTGGCAAGACGACTCTCTAAATCCAAC
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000107675.8
ENSMUST00000107678.8
ENSMUST00000107679.8
CDS-3UTR TCA 90 bp GAAGATAAGCAGCCCGTGTTTGGATATTACTGCCACTCCTTTCTAGGTGACGGTCAGCATTCCACACTTTaGGAGTCCGGTCAGTCGATC +
Preference number: 4 (lower is better)
Translates to: EDKQPVFGYYCHSFLGDGQHSTL*ESGQSI
Trigger: GATCGACTGACCGGACTCTCAAAGTGTGGAATGCTG...ACCGTCACCTAGAAAGGAGTGGCAGTAATATCCAAACACGGGCTGCTTATCTTC
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000107675.8
ENSMUST00000107678.8
ENSMUST00000107679.8
CDS-3UTR TCA 90 bp GTTGGATTTAGAGAGTCGTCTTGCCAAGCTGCCCCTCAGTCACAAGTGAGGCCTATCCCAGACTCGGATTaGTGTATCAAGAGATCCACT +
Preference number: 4 (lower is better)
Translates to: VGFRESSCQAAPQSQVRPIPDSD*CIKRST
Trigger: AGTGGATCTCTTGATACATCAATCCGAGTCTGGGAT...AGGCCTCACTTGTGACTGAGGGGCAGCTTGGCAAGACGACTCTCTAAATCCAAC
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000107675.8
ENSMUST00000107678.8
ENSMUST00000107679.8
CDS-3UTR TCA 90 bp GTTGGATTTAGAGAGTCGTCTTGCCAAGCTGCCCCTCAGTCACAAGTGAGGCCTGGTCTTTTGCACTTTTaGGATCAACAGGAACCAAGC +
Preference number: 4 (lower is better)
Translates to: VGFRESSCQAAPQSQVRPGLLHF*DQQEPS
Trigger: GCTTGGTTCCTGTTGATCTCAAAAGTGCAAAAGACC...AGGCCTCACTTGTGACTGAGGGGCAGCTTGGCAAGACGACTCTCTAAATCCAAC
50% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 1 transcripts:
ENSMUST00000107675.8
CDS-3UTR GCA 90 bp GCATCAAGAATTATATCCATCTCAGGACTCACACAACCCAGGACAACTTGCCACCCCTTGCCCATTGGCTaGTCTCAGGTCCCCAAAAGT +
Preference number: 4 (lower is better)
Translates to: ASRIISISGLTQPRTTCHPLPIG*SQVPKS
Trigger: ACTTTTGGGGACCTGAGAGCAGCCAATGGGCAAGGG...GTGGCAAGTTGTCCTGGGTTGTGTGAGTCCTGAGATGGATATAATTCTTGATGC
50% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 3 transcripts:
ENSMUST00000107675.8
ENSMUST00000107678.8
ENSMUST00000107679.8
CDS-3UTR CCA 90 bp GAAGATAAGCAGCCCGTGTTTGGATATTACTGCCACTCCTTTCTAGGTGACGGTCCAGCACCAGGAGCTTaGTTTCCTCAGTTCCATTCC +
Preference number: 4 (lower is better)
Translates to: EDKQPVFGYYCHSFLGDGPAPGA*FPQFHS
Trigger: GGAATGGAACTGAGGAAACCAAGCTCCTGGTGCTGG...ACCGTCACCTAGAAAGGAGTGGCAGTAATATCCAAACACGGGCTGCTTATCTTC
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000107675.8
ENSMUST00000107678.8
ENSMUST00000107679.8
3UTR CAA 72 bp ATGCGACAGCTGCCGCCTCCTGTCAGTTACGGTCTCTaGTCTCTTCTTGCCTTCTTAGTCTGTAGGTCTTTT +
Preference number: 4 (lower is better)
Translates to: MRQLPPPVSYGL*SLLAFLVCRSF
Trigger: AAAAGACCTACAGACTAAGAAGGCAAGAAGAGACAAGAGACCGTAACTGACAGGAGGCGGCAGCTGTCGCAT
50% GC, longest homopolymer 4 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000107675.8
ENSMUST00000107678.8
ENSMUST00000107679.8
CDS-3UTR TCA 90 bp GCATCAAGAATTATATCCATCTCAGGACTCACACAACCCAGGACAACTTGCCACATTTTCAGCCACTCTTaGAGGCCTGTGGGTGGTTGG +
Preference number: 4 (lower is better)
Translates to: ASRIISISGLTQPRTTCHIFSHS*RPVGGW
Trigger: CCAACCACCCACAGGCCTTCAAGAGTGGCTGAAAAT...GTGGCAAGTTGTCCTGGGTTGTGTGAGTCCTGAGATGGATATAATTCTTGATGC
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000107675.8
ENSMUST00000107678.8
ENSMUST00000107679.8
CDS-3UTR TCA 90 bp GCATCAAGAATTATATCCATCTCAGGACTCACACAACCCAGGACAACTTGCCACCAGCATTCCACACTTTaGGAGTCCGGTCAGTCGATC +
Preference number: 4 (lower is better)
Translates to: ASRIISISGLTQPRTTCHQHSTL*ESGQSI
Trigger: GATCGACTGACCGGACTCTCAAAGTGTGGAATGCTG...GTGGCAAGTTGTCCTGGGTTGTGTGAGTCCTGAGATGGATATAATTCTTGATGC
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000107675.8
ENSMUST00000107678.8
ENSMUST00000107679.8
CDS-3UTR TCA 90 bp GTTGGATTTAGAGAGTCGTCTTGCCAAGCTGCCCCTCAGTCACAAGTGAGGCCTTTACGAAGTTCTTGTTaGACTGTAAGCAGGTCACAG +
Preference number: 4 (lower is better)
Translates to: VGFRESSCQAAPQSQVRPLRSSC*TVSRSQ
Trigger: CTGTGACCTGCTTACAGTTCAACAAGAACTTCGTAA...AGGCCTCACTTGTGACTGAGGGGCAGCTTGGCAAGACGACTCTCTAAATCCAAC
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000107675.8
ENSMUST00000107678.8
ENSMUST00000107679.8
CDS-3UTR GCA 90 bp CTTCTTGCCTTCTTAGTCTGTAGGTCTTTTCAGTCTGTTGTCCCAAGCCAACATCCCTTGCCCATTGGCTaGTCTCAGGTCCCCAAAAGT +
Preference number: 4 (lower is better)
Translates to: LLAFLVCRSFQSVVPSQHPLPIG*SQVPKS
Trigger: ACTTTTGGGGACCTGAGAGCAGCCAATGGGCAAGGG...ATGTTGGCTTGGGACAACAGACTGAAAAGACCTACAGACTAAGAAGGCAAGAAG
49% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 3 transcripts:
ENSMUST00000107675.8
ENSMUST00000107678.8
ENSMUST00000107679.8
CDS-3UTR GCA 90 bp GTTGGATTTAGAGAGTCGTCTTGCCAAGCTGCCCCTCAGTCACAAGTGAGGCCTTTTCTTCTCTTGATGTaGAACGGTTCATCAATCCCC +
Preference number: 4 (lower is better)
Translates to: VGFRESSCQAAPQSQVRPFLLLM*NGSSIP
Trigger: GGGGATTGATGAACCGTTGCACATCAAGAGAAGAAA...AGGCCTCACTTGTGACTGAGGGGCAGCTTGGCAAGACGACTCTCTAAATCCAAC
49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000107675.8
ENSMUST00000107678.8
ENSMUST00000107679.8
CDS-3UTR GCA 90 bp GAAGATAAGCAGCCCGTGTTTGGATATTACTGCCACTCCTTTCTAGGTGACGGTATTCCGACTCCCGACTaGACACACCAGCTTTGTGTT +
Preference number: 4 (lower is better)
Translates to: EDKQPVFGYYCHSFLGDGIPTPD*THQLCV
Trigger: AACACAAAGCTGGTGTGTGCAGTCGGGAGTCGGAAT...ACCGTCACCTAGAAAGGAGTGGCAGTAATATCCAAACACGGGCTGCTTATCTTC
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000107675.8
ENSMUST00000107678.8
ENSMUST00000107679.8
CDS-3UTR CCA 90 bp GTTGGATTTAGAGAGTCGTCTTGCCAAGCTGCCCCTCAGTCACAAGTGAGGCCTATGCTTCACTTGTGTTaGTTCACAGCTGTCAATGAG +
Preference number: 4 (lower is better)
Translates to: VGFRESSCQAAPQSQVRPMLHLC*FTAVNE
Trigger: CTCATTGACAGCTGTGAACCAACACAAGTGAAGCAT...AGGCCTCACTTGTGACTGAGGGGCAGCTTGGCAAGACGACTCTCTAAATCCAAC
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000107675.8
ENSMUST00000107678.8
ENSMUST00000107679.8
CDS-3UTR CCA 90 bp GAAGATAAGCAGCCCGTGTTTGGATATTACTGCCACTCCTTTCTAGGTGACGGTAAGTCTCGCTGGAACTaGGGCTCTATCACTTGCATC +
Preference number: 4 (lower is better)
Translates to: EDKQPVFGYYCHSFLGDGKSRWN*GSITCI
Trigger: GATGCAAGTGATAGAGCCCCAGTTCCAGCGAGACTT...ACCGTCACCTAGAAAGGAGTGGCAGTAATATCCAAACACGGGCTGCTTATCTTC
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000107675.8
ENSMUST00000107678.8
ENSMUST00000107679.8
CDS-3UTR CCA 90 bp GAAGATAAGCAGCCCGTGTTTGGATATTACTGCCACTCCTTTCTAGGTGACGGTGAGATGAAGTCTCGCTaGAACTGGGGCTCTATCACT +
Preference number: 4 (lower is better)
Translates to: EDKQPVFGYYCHSFLGDGEMKSR*NWGSIT
Trigger: AGTGATAGAGCCCCAGTTCCAGCGAGACTTCATCTC...ACCGTCACCTAGAAAGGAGTGGCAGTAATATCCAAACACGGGCTGCTTATCTTC
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000107675.8
ENSMUST00000107678.8
ENSMUST00000107679.8
CDS-3UTR CCA 90 bp GAAGATAAGCAGCCCGTGTTTGGATATTACTGCCACTCCTTTCTAGGTGACGGTACAGGTCTCAGTCTCTaGATCCCACACCTTCACCAT +
Preference number: 4 (lower is better)
Translates to: EDKQPVFGYYCHSFLGDGTGLSL*IPHLHH
Trigger: ATGGTGAAGGTGTGGGATCCAGAGACTGAGACCTGT...ACCGTCACCTAGAAAGGAGTGGCAGTAATATCCAAACACGGGCTGCTTATCTTC
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000107675.8
ENSMUST00000107678.8
ENSMUST00000107679.8
CDS-3UTR CCA 90 bp GTTGGATTTAGAGAGTCGTCTTGCCAAGCTGCCCCTCAGTCACAAGTGAGGCCTGATCCACTCACCACATaGATGCCATCAAACTGTAAT +
Preference number: 4 (lower is better)
Translates to: VGFRESSCQAAPQSQVRPDPLTT*MPSNCN
Trigger: ATTACAGTTTGATGGCATCCATGTGGTGAGTGGATC...AGGCCTCACTTGTGACTGAGGGGCAGCTTGGCAAGACGACTCTCTAAATCCAAC
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000107675.8
ENSMUST00000107678.8
ENSMUST00000107679.8
CDS-3UTR CCA 90 bp GCATCAAGAATTATATCCATCTCAGGACTCACACAACCCAGGACAACTTGCCACCCAGCACCAGGAGCTTaGTTTCCTCAGTTCCATTCC +
Preference number: 4 (lower is better)
Translates to: ASRIISISGLTQPRTTCHPAPGA*FPQFHS
Trigger: GGAATGGAACTGAGGAAACCAAGCTCCTGGTGCTGG...GTGGCAAGTTGTCCTGGGTTGTGTGAGTCCTGAGATGGATATAATTCTTGATGC
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000107675.8
ENSMUST00000107678.8
ENSMUST00000107679.8
CDS-3UTR CCA 90 bp GTTGGATTTAGAGAGTCGTCTTGCCAAGCTGCCCCTCAGTCACAAGTGAGGCCTCAAAAAGGCAGACCCTaGGCAATAATGCTAATGCTA +
Preference number: 4 (lower is better)
Translates to: VGFRESSCQAAPQSQVRPQKGRP*AIMLML
Trigger: TAGCATTAGCATTATTGCCCAGGGTCTGCCTTTTTG...AGGCCTCACTTGTGACTGAGGGGCAGCTTGGCAAGACGACTCTCTAAATCCAAC
49% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000107675.8
CDS-3UTR TCA 90 bp GTTGGATTTAGAGAGTCGTCTTGCCAAGCTGCCCCTCAGTCACAAGTGAGGCCTGGTACTGGTATAATCTaGGACTTTGCATGGTTTCTT +
Preference number: 4 (lower is better)
Translates to: VGFRESSCQAAPQSQVRPGTGII*DFAWFL
Trigger: AAGAAACCATGCAAAGTCTCAGATTATACCAGTACC...AGGCCTCACTTGTGACTGAGGGGCAGCTTGGCAAGACGACTCTCTAAATCCAAC
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000107675.8
ENSMUST00000107678.8
ENSMUST00000107679.8
CDS-3UTR TCA 90 bp GAAGATAAGCAGCCCGTGTTTGGATATTACTGCCACTCCTTTCTAGGTGACGGTAGTTGTTGGTGTTGCTaGACATGGTACAAGGCCAGT +
Preference number: 4 (lower is better)
Translates to: EDKQPVFGYYCHSFLGDGSCWCC*TWYKAS
Trigger: ACTGGCCTTGTACCATGTTCAGCAACACCAACAACT...ACCGTCACCTAGAAAGGAGTGGCAGTAATATCCAAACACGGGCTGCTTATCTTC
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000107675.8
ENSMUST00000107678.8
ENSMUST00000107679.8
CDS-3UTR TCA 90 bp CTTCTTGCCTTCTTAGTCTGTAGGTCTTTTCAGTCTGTTGTCCCAAGCCAACATATTTTCAGCCACTCTTaGAGGCCTGTGGGTGGTTGG +
Preference number: 4 (lower is better)
Translates to: LLAFLVCRSFQSVVPSQHIFSHS*RPVGGW
Trigger: CCAACCACCCACAGGCCTTCAAGAGTGGCTGAAAAT...ATGTTGGCTTGGGACAACAGACTGAAAAGACCTACAGACTAAGAAGGCAAGAAG
48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000107675.8
ENSMUST00000107678.8
ENSMUST00000107679.8
CDS-3UTR TCA 90 bp GAAGATAAGCAGCCCGTGTTTGGATATTACTGCCACTCCTTTCTAGGTGACGGTGTTCACAGCTGTCAATaGGCTCATCTAAAGCCAGCA +
Preference number: 4 (lower is better)
Translates to: EDKQPVFGYYCHSFLGDGVHSCQ*AHLKPA
Trigger: TGCTGGCTTTAGATGAGCTCATTGACAGCTGTGAAC...ACCGTCACCTAGAAAGGAGTGGCAGTAATATCCAAACACGGGCTGCTTATCTTC
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000107675.8
ENSMUST00000107678.8
ENSMUST00000107679.8
CDS-3UTR TCA 90 bp GCATCAAGAATTATATCCATCTCAGGACTCACACAACCCAGGACAACTTGCCACCAATATCCCAAACCCTaGGAGTGGCATCTCGAGAAC +
Preference number: 4 (lower is better)
Translates to: ASRIISISGLTQPRTTCHQYPKP*EWHLEN
Trigger: GTTCTCGAGATGCCACTCTCAGGGTTTGGGATATTG...GTGGCAAGTTGTCCTGGGTTGTGTGAGTCCTGAGATGGATATAATTCTTGATGC
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000107675.8
ENSMUST00000107678.8
ENSMUST00000107679.8
CDS-3UTR TCA 90 bp GCATCAAGAATTATATCCATCTCAGGACTCACACAACCCAGGACAACTTGCCACGACCGTTCCGTCGTCTaGGCTGGTAATTACGAAGTT +
Preference number: 4 (lower is better)
Translates to: ASRIISISGLTQPRTTCHDRSVV*AGNYEV
Trigger: AACTTCGTAATTACCAGCTCAGACGACGGAACGGTC...GTGGCAAGTTGTCCTGGGTTGTGTGAGTCCTGAGATGGATATAATTCTTGATGC
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000107675.8
ENSMUST00000107678.8
ENSMUST00000107679.8
CDS-3UTR GCA 90 bp GTTGGATTTAGAGAGTCGTCTTGCCAAGCTGCCCCTCAGTCACAAGTGAGGCCTCACTCACCACATGGATaGCATCAAACTGTAATGAAT +
Preference number: 4 (lower is better)
Translates to: VGFRESSCQAAPQSQVRPHSPHG*HQTVMN
Trigger: ATTCATTACAGTTTGATGGCATCCATGTGGTGAGTG...AGGCCTCACTTGTGACTGAGGGGCAGCTTGGCAAGACGACTCTCTAAATCCAAC
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000107675.8
ENSMUST00000107678.8
ENSMUST00000107679.8
CDS-3UTR CCA 90 bp GCATCAAGAATTATATCCATCTCAGGACTCACACAACCCAGGACAACTTGCCACAAGTCTCGCTGGAACTaGGGCTCTATCACTTGCATC +
Preference number: 4 (lower is better)
Translates to: ASRIISISGLTQPRTTCHKSRWN*GSITCI
Trigger: GATGCAAGTGATAGAGCCCCAGTTCCAGCGAGACTT...GTGGCAAGTTGTCCTGGGTTGTGTGAGTCCTGAGATGGATATAATTCTTGATGC
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000107675.8
ENSMUST00000107678.8
ENSMUST00000107679.8
CDS-3UTR CCA 90 bp GAAGATAAGCAGCCCGTGTTTGGATATTACTGCCACTCCTTTCTAGGTGACGGTCTTGCAGCAGGTCTTTaGGTTCCAGGAATGAAAGCA +
Preference number: 4 (lower is better)
Translates to: EDKQPVFGYYCHSFLGDGLAAGL*VPGMKA
Trigger: TGCTTTCATTCCTGGAACCCAAAGACCTGCTGCAAG...ACCGTCACCTAGAAAGGAGTGGCAGTAATATCCAAACACGGGCTGCTTATCTTC
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000107675.8
ENSMUST00000107678.8
ENSMUST00000107679.8
CDS-3UTR CCA 90 bp GAAGATAAGCAGCCCGTGTTTGGATATTACTGCCACTCCTTTCTAGGTGACGGTATACGCACTCTTCCATaGGCTGTGTATGAAACCTGG +
Preference number: 4 (lower is better)
Translates to: EDKQPVFGYYCHSFLGDGIRTLP*AVYETW
Trigger: CCAGGTTTCATACACAGCCCATGGAAGAGTGCGTAT...ACCGTCACCTAGAAAGGAGTGGCAGTAATATCCAAACACGGGCTGCTTATCTTC
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000107675.8
ENSMUST00000107678.8
ENSMUST00000107679.8
CDS-3UTR CCA 90 bp GCATCAAGAATTATATCCATCTCAGGACTCACACAACCCAGGACAACTTGCCACACAGGTCTCAGTCTCTaGATCCCACACCTTCACCAT +
Preference number: 4 (lower is better)
Translates to: ASRIISISGLTQPRTTCHTGLSL*IPHLHH
Trigger: ATGGTGAAGGTGTGGGATCCAGAGACTGAGACCTGT...GTGGCAAGTTGTCCTGGGTTGTGTGAGTCCTGAGATGGATATAATTCTTGATGC
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000107675.8
ENSMUST00000107678.8
ENSMUST00000107679.8
CDS-3UTR CCA 90 bp CTTCTTGCCTTCTTAGTCTGTAGGTCTTTTCAGTCTGTTGTCCCAAGCCAACATCCAGCACCAGGAGCTTaGTTTCCTCAGTTCCATTCC +
Preference number: 4 (lower is better)
Translates to: LLAFLVCRSFQSVVPSQHPAPGA*FPQFHS
Trigger: GGAATGGAACTGAGGAAACCAAGCTCCTGGTGCTGG...ATGTTGGCTTGGGACAACAGACTGAAAAGACCTACAGACTAAGAAGGCAAGAAG
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000107675.8
ENSMUST00000107678.8
ENSMUST00000107679.8
CDS-3UTR CCA 90 bp GAAGATAAGCAGCCCGTGTTTGGATATTACTGCCACTCCTTTCTAGGTGACGGTCATCACAGTCTGATGTaGCAGAGGGTCTTTTGCACT +
Preference number: 4 (lower is better)
Translates to: EDKQPVFGYYCHSFLGDGHHSLM*QRVFCT
Trigger: AGTGCAAAAGACCCTCTGCCACATCAGACTGTGATG...ACCGTCACCTAGAAAGGAGTGGCAGTAATATCCAAACACGGGCTGCTTATCTTC
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000107675.8
CDS-3UTR TCA 90 bp GAAGATAAGCAGCCCGTGTTTGGATATTACTGCCACTCCTTTCTAGGTGACGGTTTTGGGTTCCAGGAATaGAAGCACATAGAGTGCCAA +
Preference number: 4 (lower is better)
Translates to: EDKQPVFGYYCHSFLGDGFGFQE*KHIECQ
Trigger: TTGGCACTCTATGTGCTTTCATTCCTGGAACCCAAA...ACCGTCACCTAGAAAGGAGTGGCAGTAATATCCAAACACGGGCTGCTTATCTTC
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000107675.8
ENSMUST00000107678.8
ENSMUST00000107679.8
CDS-3UTR TCA 90 bp GTTGGATTTAGAGAGTCGTCTTGCCAAGCTGCCCCTCAGTCACAAGTGAGGCCTTCCATGGGCTGTGTATaGAACCTGGTTTTATTATTT +
Preference number: 4 (lower is better)
Translates to: VGFRESSCQAAPQSQVRPSMGCV*NLVLLF
Trigger: AAATAATAAAACCAGGTTTCATACACAGCCCATGGA...AGGCCTCACTTGTGACTGAGGGGCAGCTTGGCAAGACGACTCTCTAAATCCAAC
47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000107675.8
ENSMUST00000107678.8
ENSMUST00000107679.8
CDS-3UTR TCA 90 bp GAAGATAAGCAGCCCGTGTTTGGATATTACTGCCACTCCTTTCTAGGTGACGGTCAATTCTGTGCTGTCTaGTATACGCACTCTTCCATG +
Preference number: 4 (lower is better)
Translates to: EDKQPVFGYYCHSFLGDGQFCAV*YTHSSM
Trigger: CATGGAAGAGTGCGTATATCAGACAGCACAGAATTG...ACCGTCACCTAGAAAGGAGTGGCAGTAATATCCAAACACGGGCTGCTTATCTTC
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000107675.8
ENSMUST00000107678.8
ENSMUST00000107679.8
CDS-3UTR TCA 90 bp CTTCTTGCCTTCTTAGTCTGTAGGTCTTTTCAGTCTGTTGTCCCAAGCCAACATCAATATCCCAAACCCTaGGAGTGGCATCTCGAGAAC +
Preference number: 4 (lower is better)
Translates to: LLAFLVCRSFQSVVPSQHQYPKP*EWHLEN
Trigger: GTTCTCGAGATGCCACTCTCAGGGTTTGGGATATTG...ATGTTGGCTTGGGACAACAGACTGAAAAGACCTACAGACTAAGAAGGCAAGAAG
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000107675.8
ENSMUST00000107678.8
ENSMUST00000107679.8
CDS-3UTR TCA 90 bp GAAGATAAGCAGCCCGTGTTTGGATATTACTGCCACTCCTTTCTAGGTGACGGTATCCCAGACTCGGATTaGTGTATCAAGAGATCCACT +
Preference number: 4 (lower is better)
Translates to: EDKQPVFGYYCHSFLGDGIPDSD*CIKRST
Trigger: AGTGGATCTCTTGATACATCAATCCGAGTCTGGGAT...ACCGTCACCTAGAAAGGAGTGGCAGTAATATCCAAACACGGGCTGCTTATCTTC
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000107675.8
ENSMUST00000107678.8
ENSMUST00000107679.8
CDS-3UTR TCA 90 bp GCATCAAGAATTATATCCATCTCAGGACTCACACAACCCAGGACAACTTGCCACTGTCCTGTTAGCGTGTaGATACAATTCCCTGTCTCC +
Preference number: 4 (lower is better)
Translates to: ASRIISISGLTQPRTTCHCPVSV*IQFPVS
Trigger: GGAGACAGGGAATTGTATTCACACGCTAACAGGACA...GTGGCAAGTTGTCCTGGGTTGTGTGAGTCCTGAGATGGATATAATTCTTGATGC
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000107675.8
ENSMUST00000107678.8
ENSMUST00000107679.8
CDS-3UTR TCA 90 bp CTTCTTGCCTTCTTAGTCTGTAGGTCTTTTCAGTCTGTTGTCCCAAGCCAACATGACCGTTCCGTCGTCTaGGCTGGTAATTACGAAGTT +
Preference number: 4 (lower is better)
Translates to: LLAFLVCRSFQSVVPSQHDRSVV*AGNYEV
Trigger: AACTTCGTAATTACCAGCTCAGACGACGGAACGGTC...ATGTTGGCTTGGGACAACAGACTGAAAAGACCTACAGACTAAGAAGGCAAGAAG
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000107675.8
ENSMUST00000107678.8
ENSMUST00000107679.8
CDS-3UTR TCA 90 bp CTTCTTGCCTTCTTAGTCTGTAGGTCTTTTCAGTCTGTTGTCCCAAGCCAACATTCCTCTTGCTCTTCCTaGTTTCCCGAAGAGTCCTCA +
Preference number: 4 (lower is better)
Translates to: LLAFLVCRSFQSVVPSQHSSCSS*FPEESS
Trigger: TGAGGACTCTTCGGGAAATCAGGAAGAGCAAGAGGA...ATGTTGGCTTGGGACAACAGACTGAAAAGACCTACAGACTAAGAAGGCAAGAAG
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000107678.8
ENSMUST00000107679.8
CDS-3UTR GCA 90 bp GTTGGATTTAGAGAGTCGTCTTGCCAAGCTGCCCCTCAGTCACAAGTGAGGCCTATCACTTGCATCATATaGTTCACTTGTGTTGGTTCA +
Preference number: 4 (lower is better)
Translates to: VGFRESSCQAAPQSQVRPITCII*FTCVGS
Trigger: TGAACCAACACAAGTGAAGCATATGATGCAAGTGAT...AGGCCTCACTTGTGACTGAGGGGCAGCTTGGCAAGACGACTCTCTAAATCCAAC
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000107675.8
ENSMUST00000107678.8
ENSMUST00000107679.8
CDS-3UTR GCA 90 bp GAAGATAAGCAGCCCGTGTTTGGATATTACTGCCACTCCTTTCTAGGTGACGGTATCACATGGTCATCATaGCCTTTCAGCACCTTAGGA +
Preference number: 4 (lower is better)
Translates to: EDKQPVFGYYCHSFLGDGITWSS*PFSTLG
Trigger: TCCTAAGGTGCTGAAAGGGCATGATGACCATGTGAT...ACCGTCACCTAGAAAGGAGTGGCAGTAATATCCAAACACGGGCTGCTTATCTTC
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000107675.8
ENSMUST00000107678.8
ENSMUST00000107679.8
CDS-3UTR GCA 90 bp CTTCTTGCCTTCTTAGTCTGTAGGTCTTTTCAGTCTGTTGTCCCAAGCCAACATATTCCGACTCCCGACTaGACACACCAGCTTTGTGTT +
Preference number: 4 (lower is better)
Translates to: LLAFLVCRSFQSVVPSQHIPTPD*THQLCV
Trigger: AACACAAAGCTGGTGTGTGCAGTCGGGAGTCGGAAT...ATGTTGGCTTGGGACAACAGACTGAAAAGACCTACAGACTAAGAAGGCAAGAAG
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000107675.8
ENSMUST00000107678.8
ENSMUST00000107679.8
CDS-3UTR GCA 90 bp GAAGATAAGCAGCCCGTGTTTGGATATTACTGCCACTCCTTTCTAGGTGACGGTTGGCAGAGGGTCTTTTaGACTTTTGAGATCAACAGG +
Preference number: 4 (lower is better)
Translates to: EDKQPVFGYYCHSFLGDGWQRVF*TFEINR
Trigger: CCTGTTGATCTCAAAAGTGCAAAAGACCCTCTGCCA...ACCGTCACCTAGAAAGGAGTGGCAGTAATATCCAAACACGGGCTGCTTATCTTC
47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000107675.8
CDS-3UTR GCA 90 bp CTTCTTGCCTTCTTAGTCTGTAGGTCTTTTCAGTCTGTTGTCCCAAGCCAACATTTCGTCGTCTTTTGCTaGCCACAGAGAGCAGTTCCT +
Preference number: 4 (lower is better)
Translates to: LLAFLVCRSFQSVVPSQHFVVFC*PQRAVP
Trigger: AGGAACTGCTCTCTGTGGGCAGCAAAAGACGACGAA...ATGTTGGCTTGGGACAACAGACTGAAAAGACCTACAGACTAAGAAGGCAAGAAG
47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000107678.8
ENSMUST00000107679.8
CDS-3UTR GCA 90 bp CTTCTTGCCTTCTTAGTCTGTAGGTCTTTTCAGTCTGTTGTCCCAAGCCAACATCAGTTCGTCGTCTTTTaGTGCCCACAGAGAGCAGTT +
Preference number: 4 (lower is better)
Translates to: LLAFLVCRSFQSVVPSQHQFVVF*CPQRAV
Trigger: AACTGCTCTCTGTGGGCAGCAAAAGACGACGAACTG...ATGTTGGCTTGGGACAACAGACTGAAAAGACCTACAGACTAAGAAGGCAAGAAG
47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000107678.8
ENSMUST00000107679.8
CDS-3UTR CCA 90 bp CTTCTTGCCTTCTTAGTCTGTAGGTCTTTTCAGTCTGTTGTCCCAAGCCAACATGAGATGAAGTCTCGCTaGAACTGGGGCTCTATCACT +
Preference number: 4 (lower is better)
Translates to: LLAFLVCRSFQSVVPSQHEMKSR*NWGSIT
Trigger: AGTGATAGAGCCCCAGTTCCAGCGAGACTTCATCTC...ATGTTGGCTTGGGACAACAGACTGAAAAGACCTACAGACTAAGAAGGCAAGAAG
47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000107675.8
ENSMUST00000107678.8
ENSMUST00000107679.8
CDS-3UTR CCA 90 bp GCATCAAGAATTATATCCATCTCAGGACTCACACAACCCAGGACAACTTGCCACCTTGCAGCAGGTCTTTaGGTTCCAGGAATGAAAGCA +
Preference number: 4 (lower is better)
Translates to: ASRIISISGLTQPRTTCHLAAGL*VPGMKA
Trigger: TGCTTTCATTCCTGGAACCCAAAGACCTGCTGCAAG...GTGGCAAGTTGTCCTGGGTTGTGTGAGTCCTGAGATGGATATAATTCTTGATGC
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000107675.8
ENSMUST00000107678.8
ENSMUST00000107679.8
CDS-3UTR CCA 90 bp GCATCAAGAATTATATCCATCTCAGGACTCACACAACCCAGGACAACTTGCCACAGGACGTGTAAACACTaGCCGGTCTCAATATCCCAA +
Preference number: 4 (lower is better)
Translates to: ASRIISISGLTQPRTTCHRTCKH*PVSISQ
Trigger: TTGGGATATTGAGACCGGCCAGTGTTTACACGTCCT...GTGGCAAGTTGTCCTGGGTTGTGTGAGTCCTGAGATGGATATAATTCTTGATGC
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000107675.8
ENSMUST00000107678.8
ENSMUST00000107679.8
CDS-3UTR CCA 90 bp CTTCTTGCCTTCTTAGTCTGTAGGTCTTTTCAGTCTGTTGTCCCAAGCCAACATACAGGTCTCAGTCTCTaGATCCCACACCTTCACCAT +
Preference number: 4 (lower is better)
Translates to: LLAFLVCRSFQSVVPSQHTGLSL*IPHLHH
Trigger: ATGGTGAAGGTGTGGGATCCAGAGACTGAGACCTGT...ATGTTGGCTTGGGACAACAGACTGAAAAGACCTACAGACTAAGAAGGCAAGAAG
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000107675.8
ENSMUST00000107678.8
ENSMUST00000107679.8
CDS-3UTR CCA 90 bp GCATCAAGAATTATATCCATCTCAGGACTCACACAACCCAGGACAACTTGCCACACAGGAACCAAGCCATaGTTCACAGGAGCTTTTCCA +
Preference number: 4 (lower is better)
Translates to: ASRIISISGLTQPRTTCHTGTKP*FTGAFP
Trigger: TGGAAAAGCTCCTGTGAACCATGGCTTGGTTCCTGT...GTGGCAAGTTGTCCTGGGTTGTGTGAGTCCTGAGATGGATATAATTCTTGATGC
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000107675.8
3UTR CAA 72 bp CCACTGGAGAAGAAAACAAAGAATAATTGCACCTGGTaGGATTTAGAGAGTCGTCTTGCCAAGCTGCCCCTC +
Preference number: 4 (lower is better)
Translates to: PLEKKTKNNCTW*DLESRLAKLPL
Trigger: GAGGGGCAGCTTGGCAAGACGACTCTCTAAATCCAACCAGGTGCAATTATTCTTTGTTTTCTTCTCCAGTGG
47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000107675.8
ENSMUST00000107678.8
ENSMUST00000107679.8
CDS-3UTR TCA 90 bp GCATCAAGAATTATATCCATCTCAGGACTCACACAACCCAGGACAACTTGCCACCAATTCTGTGCTGTCTaGTATACGCACTCTTCCATG +
Preference number: 4 (lower is better)
Translates to: ASRIISISGLTQPRTTCHQFCAV*YTHSSM
Trigger: CATGGAAGAGTGCGTATATCAGACAGCACAGAATTG...GTGGCAAGTTGTCCTGGGTTGTGTGAGTCCTGAGATGGATATAATTCTTGATGC
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000107675.8
ENSMUST00000107678.8
ENSMUST00000107679.8
CDS-3UTR TCA 90 bp GAAGATAAGCAGCCCGTGTTTGGATATTACTGCCACTCCTTTCTAGGTGACGGTTTACGAAGTTCTTGTTaGACTGTAAGCAGGTCACAG +
Preference number: 4 (lower is better)
Translates to: EDKQPVFGYYCHSFLGDGLRSSC*TVSRSQ
Trigger: CTGTGACCTGCTTACAGTTCAACAAGAACTTCGTAA...ACCGTCACCTAGAAAGGAGTGGCAGTAATATCCAAACACGGGCTGCTTATCTTC
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000107675.8
ENSMUST00000107678.8
ENSMUST00000107679.8
CDS-3UTR GCA 90 bp GTTGGATTTAGAGAGTCGTCTTGCCAAGCTGCCCCTCAGTCACAAGTGAGGCCTTATAATCTGAGACTTTaGATGGTTTCTTTCCCAAAG +
Preference number: 4 (lower is better)
Translates to: VGFRESSCQAAPQSQVRPYNLRL*MVSFPK
Trigger: CTTTGGGAAAGAAACCATGCAAAGTCTCAGATTATA...AGGCCTCACTTGTGACTGAGGGGCAGCTTGGCAAGACGACTCTCTAAATCCAAC
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000107675.8
ENSMUST00000107678.8
ENSMUST00000107679.8
CDS-3UTR GCA 90 bp GAAGATAAGCAGCCCGTGTTTGGATATTACTGCCACTCCTTTCTAGGTGACGGTTGGGGCTCTATCACTTaGATCATATGCTTCACTTGT +
Preference number: 4 (lower is better)
Translates to: EDKQPVFGYYCHSFLGDGWGSIT*IICFTC
Trigger: ACAAGTGAAGCATATGATGCAAGTGATAGAGCCCCA...ACCGTCACCTAGAAAGGAGTGGCAGTAATATCCAAACACGGGCTGCTTATCTTC
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000107675.8
ENSMUST00000107678.8
ENSMUST00000107679.8
CDS-3UTR GCA 90 bp GAAGATAAGCAGCCCGTGTTTGGATATTACTGCCACTCCTTTCTAGGTGACGGTTTTCTTCTCTTGATGTaGAACGGTTCATCAATCCCC +
Preference number: 4 (lower is better)
Translates to: EDKQPVFGYYCHSFLGDGFLLLM*NGSSIP
Trigger: GGGGATTGATGAACCGTTGCACATCAAGAGAAGAAA...ACCGTCACCTAGAAAGGAGTGGCAGTAATATCCAAACACGGGCTGCTTATCTTC
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000107675.8
ENSMUST00000107678.8
ENSMUST00000107679.8
CDS-3UTR GCA 90 bp GCATCAAGAATTATATCCATCTCAGGACTCACACAACCCAGGACAACTTGCCACATCACATGGTCATCATaGCCTTTCAGCACCTTAGGA +
Preference number: 4 (lower is better)
Translates to: ASRIISISGLTQPRTTCHITWSS*PFSTLG
Trigger: TCCTAAGGTGCTGAAAGGGCATGATGACCATGTGAT...GTGGCAAGTTGTCCTGGGTTGTGTGAGTCCTGAGATGGATATAATTCTTGATGC
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000107675.8
ENSMUST00000107678.8
ENSMUST00000107679.8
CDS-3UTR GCA 90 bp GAAGATAAGCAGCCCGTGTTTGGATATTACTGCCACTCCTTTCTAGGTGACGGTTGCTTGCTGGGACCTTaGAAAGTTTGTAAACACTGT +
Preference number: 4 (lower is better)
Translates to: EDKQPVFGYYCHSFLGDGCLLGP*KVCKHC
Trigger: ACAGTGTTTACAAACTTTGCAAGGTCCCAGCAAGCA...ACCGTCACCTAGAAAGGAGTGGCAGTAATATCCAAACACGGGCTGCTTATCTTC
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000107675.8
ENSMUST00000107678.8
ENSMUST00000107679.8
CDS-3UTR CCA 90 bp GAAGATAAGCAGCCCGTGTTTGGATATTACTGCCACTCCTTTCTAGGTGACGGTATGCTTCACTTGTGTTaGTTCACAGCTGTCAATGAG +
Preference number: 4 (lower is better)
Translates to: EDKQPVFGYYCHSFLGDGMLHLC*FTAVNE
Trigger: CTCATTGACAGCTGTGAACCAACACAAGTGAAGCAT...ACCGTCACCTAGAAAGGAGTGGCAGTAATATCCAAACACGGGCTGCTTATCTTC
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000107675.8
ENSMUST00000107678.8
ENSMUST00000107679.8
CDS-3UTR CCA 90 bp CTTCTTGCCTTCTTAGTCTGTAGGTCTTTTCAGTCTGTTGTCCCAAGCCAACATCTTGCAGCAGGTCTTTaGGTTCCAGGAATGAAAGCA +
Preference number: 4 (lower is better)
Translates to: LLAFLVCRSFQSVVPSQHLAAGL*VPGMKA
Trigger: TGCTTTCATTCCTGGAACCCAAAGACCTGCTGCAAG...ATGTTGGCTTGGGACAACAGACTGAAAAGACCTACAGACTAAGAAGGCAAGAAG
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000107675.8
ENSMUST00000107678.8
ENSMUST00000107679.8
CDS-3UTR CCA 90 bp CTTCTTGCCTTCTTAGTCTGTAGGTCTTTTCAGTCTGTTGTCCCAAGCCAACATATACGCACTCTTCCATaGGCTGTGTATGAAACCTGG +
Preference number: 4 (lower is better)
Translates to: LLAFLVCRSFQSVVPSQHIRTLP*AVYETW
Trigger: CCAGGTTTCATACACAGCCCATGGAAGAGTGCGTAT...ATGTTGGCTTGGGACAACAGACTGAAAAGACCTACAGACTAAGAAGGCAAGAAG
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000107675.8
ENSMUST00000107678.8
ENSMUST00000107679.8
CDS-3UTR CCA 90 bp CTTCTTGCCTTCTTAGTCTGTAGGTCTTTTCAGTCTGTTGTCCCAAGCCAACATAGGACGTGTAAACACTaGCCGGTCTCAATATCCCAA +
Preference number: 4 (lower is better)
Translates to: LLAFLVCRSFQSVVPSQHRTCKH*PVSISQ
Trigger: TTGGGATATTGAGACCGGCCAGTGTTTACACGTCCT...ATGTTGGCTTGGGACAACAGACTGAAAAGACCTACAGACTAAGAAGGCAAGAAG
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000107675.8
ENSMUST00000107678.8
ENSMUST00000107679.8
CDS-3UTR CCA 90 bp GAAGATAAGCAGCCCGTGTTTGGATATTACTGCCACTCCTTTCTAGGTGACGGTGATCCACTCACCACATaGATGCCATCAAACTGTAAT +
Preference number: 4 (lower is better)
Translates to: EDKQPVFGYYCHSFLGDGDPLTT*MPSNCN
Trigger: ATTACAGTTTGATGGCATCCATGTGGTGAGTGGATC...ACCGTCACCTAGAAAGGAGTGGCAGTAATATCCAAACACGGGCTGCTTATCTTC
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000107675.8
ENSMUST00000107678.8
ENSMUST00000107679.8
CDS-3UTR TCA 90 bp GAAGATAAGCAGCCCGTGTTTGGATATTACTGCCACTCCTTTCTAGGTGACGGTGGTACTGGTATAATCTaGGACTTTGCATGGTTTCTT +
Preference number: 4 (lower is better)
Translates to: EDKQPVFGYYCHSFLGDGGTGII*DFAWFL
Trigger: AAGAAACCATGCAAAGTCTCAGATTATACCAGTACC...ACCGTCACCTAGAAAGGAGTGGCAGTAATATCCAAACACGGGCTGCTTATCTTC
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000107675.8
ENSMUST00000107678.8
ENSMUST00000107679.8
CDS-3UTR TCA 90 bp CTTCTTGCCTTCTTAGTCTGTAGGTCTTTTCAGTCTGTTGTCCCAAGCCAACATTTTGGGTTCCAGGAATaGAAGCACATAGAGTGCCAA +
Preference number: 4 (lower is better)
Translates to: LLAFLVCRSFQSVVPSQHFGFQE*KHIECQ
Trigger: TTGGCACTCTATGTGCTTTCATTCCTGGAACCCAAA...ATGTTGGCTTGGGACAACAGACTGAAAAGACCTACAGACTAAGAAGGCAAGAAG
44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000107675.8
ENSMUST00000107678.8
ENSMUST00000107679.8
CDS-3UTR TCA 90 bp CTTCTTGCCTTCTTAGTCTGTAGGTCTTTTCAGTCTGTTGTCCCAAGCCAACATATCCCAGACTCGGATTaGTGTATCAAGAGATCCACT +
Preference number: 4 (lower is better)
Translates to: LLAFLVCRSFQSVVPSQHIPDSD*CIKRST
Trigger: AGTGGATCTCTTGATACATCAATCCGAGTCTGGGAT...ATGTTGGCTTGGGACAACAGACTGAAAAGACCTACAGACTAAGAAGGCAAGAAG
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000107675.8
ENSMUST00000107678.8
ENSMUST00000107679.8
CDS-3UTR GCA 90 bp CTTCTTGCCTTCTTAGTCTGTAGGTCTTTTCAGTCTGTTGTCCCAAGCCAACATATCACATGGTCATCATaGCCTTTCAGCACCTTAGGA +
Preference number: 4 (lower is better)
Translates to: LLAFLVCRSFQSVVPSQHITWSS*PFSTLG
Trigger: TCCTAAGGTGCTGAAAGGGCATGATGACCATGTGAT...ATGTTGGCTTGGGACAACAGACTGAAAAGACCTACAGACTAAGAAGGCAAGAAG
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000107675.8
ENSMUST00000107678.8
ENSMUST00000107679.8
CDS-3UTR GCA 90 bp GAAGATAAGCAGCCCGTGTTTGGATATTACTGCCACTCCTTTCTAGGTGACGGTCACTCACCACATGGATaGCATCAAACTGTAATGAAT +
Preference number: 4 (lower is better)
Translates to: EDKQPVFGYYCHSFLGDGHSPHG*HQTVMN
Trigger: ATTCATTACAGTTTGATGGCATCCATGTGGTGAGTG...ACCGTCACCTAGAAAGGAGTGGCAGTAATATCCAAACACGGGCTGCTTATCTTC
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000107675.8
ENSMUST00000107678.8
ENSMUST00000107679.8
CDS-3UTR GCA 90 bp GCATCAAGAATTATATCCATCTCAGGACTCACACAACCCAGGACAACTTGCCACTGCTTGCTGGGACCTTaGAAAGTTTGTAAACACTGT +
Preference number: 4 (lower is better)
Translates to: ASRIISISGLTQPRTTCHCLLGP*KVCKHC
Trigger: ACAGTGTTTACAAACTTTGCAAGGTCCCAGCAAGCA...GTGGCAAGTTGTCCTGGGTTGTGTGAGTCCTGAGATGGATATAATTCTTGATGC
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000107675.8
ENSMUST00000107678.8
ENSMUST00000107679.8
CDS-3UTR GCA 90 bp GAAGATAAGCAGCCCGTGTTTGGATATTACTGCCACTCCTTTCTAGGTGACGGTTATGTTCATCTTCTCTaGTACTGTCATCAGACGGAT +
Preference number: 4 (lower is better)
Translates to: EDKQPVFGYYCHSFLGDGYVHLL*YCHQTD
Trigger: ATCCGTCTGATGACAGTAGCAGAGAAGATGAACATA...ACCGTCACCTAGAAAGGAGTGGCAGTAATATCCAAACACGGGCTGCTTATCTTC
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000107678.8
ENSMUST00000107679.8
CDS-3UTR CCA 90 bp GCATCAAGAATTATATCCATCTCAGGACTCACACAACCCAGGACAACTTGCCACGATCCACTCACCACATaGATGCCATCAAACTGTAAT +
Preference number: 4 (lower is better)
Translates to: ASRIISISGLTQPRTTCHDPLTT*MPSNCN
Trigger: ATTACAGTTTGATGGCATCCATGTGGTGAGTGGATC...GTGGCAAGTTGTCCTGGGTTGTGTGAGTCCTGAGATGGATATAATTCTTGATGC
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000107675.8
ENSMUST00000107678.8
ENSMUST00000107679.8
CDS-3UTR TCA 90 bp GAAGATAAGCAGCCCGTGTTTGGATATTACTGCCACTCCTTTCTAGGTGACGGTTCCATGGGCTGTGTATaGAACCTGGTTTTATTATTT +
Preference number: 4 (lower is better)
Translates to: EDKQPVFGYYCHSFLGDGSMGCV*NLVLLF
Trigger: AAATAATAAAACCAGGTTTCATACACAGCCCATGGA...ACCGTCACCTAGAAAGGAGTGGCAGTAATATCCAAACACGGGCTGCTTATCTTC
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000107675.8
ENSMUST00000107678.8
ENSMUST00000107679.8
CDS-3UTR GCA 90 bp CTTCTTGCCTTCTTAGTCTGTAGGTCTTTTCAGTCTGTTGTCCCAAGCCAACATTGGGGCTCTATCACTTaGATCATATGCTTCACTTGT +
Preference number: 4 (lower is better)
Translates to: LLAFLVCRSFQSVVPSQHWGSIT*IICFTC
Trigger: ACAAGTGAAGCATATGATGCAAGTGATAGAGCCCCA...ATGTTGGCTTGGGACAACAGACTGAAAAGACCTACAGACTAAGAAGGCAAGAAG
43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000107675.8
ENSMUST00000107678.8
ENSMUST00000107679.8
CDS-3UTR GCA 90 bp GAAGATAAGCAGCCCGTGTTTGGATATTACTGCCACTCCTTTCTAGGTGACGGTTTTGTATCAATTCTGTaGTGTCTGATATACGCACTC +
Preference number: 4 (lower is better)
Translates to: EDKQPVFGYYCHSFLGDGFVSIL*CLIYAL
Trigger: GAGTGCGTATATCAGACAGCACAGAATTGATACAAA...ACCGTCACCTAGAAAGGAGTGGCAGTAATATCCAAACACGGGCTGCTTATCTTC
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000107675.8
ENSMUST00000107678.8
ENSMUST00000107679.8
CDS-3UTR GCA 90 bp GCATCAAGAATTATATCCATCTCAGGACTCACACAACCCAGGACAACTTGCCACCACTCACCACATGGATaGCATCAAACTGTAATGAAT +
Preference number: 4 (lower is better)
Translates to: ASRIISISGLTQPRTTCHHSPHG*HQTVMN
Trigger: ATTCATTACAGTTTGATGGCATCCATGTGGTGAGTG...GTGGCAAGTTGTCCTGGGTTGTGTGAGTCCTGAGATGGATATAATTCTTGATGC
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000107675.8
ENSMUST00000107678.8
ENSMUST00000107679.8
CDS-3UTR GCA 90 bp GCATCAAGAATTATATCCATCTCAGGACTCACACAACCCAGGACAACTTGCCACGTGACATTGCTATTGTaGGTATGTTCATCTTCTCTG +
Preference number: 4 (lower is better)
Translates to: ASRIISISGLTQPRTTCHVTLLL*VCSSSL
Trigger: CAGAGAAGATGAACATACGCACAATAGCAATGTCAC...GTGGCAAGTTGTCCTGGGTTGTGTGAGTCCTGAGATGGATATAATTCTTGATGC
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000107678.8
ENSMUST00000107679.8
CDS-3UTR CCA 90 bp CTTCTTGCCTTCTTAGTCTGTAGGTCTTTTCAGTCTGTTGTCCCAAGCCAACATATGCTTCACTTGTGTTaGTTCACAGCTGTCAATGAG +
Preference number: 4 (lower is better)
Translates to: LLAFLVCRSFQSVVPSQHMLHLC*FTAVNE
Trigger: CTCATTGACAGCTGTGAACCAACACAAGTGAAGCAT...ATGTTGGCTTGGGACAACAGACTGAAAAGACCTACAGACTAAGAAGGCAAGAAG
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000107675.8
ENSMUST00000107678.8
ENSMUST00000107679.8
CDS-3UTR TCA 90 bp CTTCTTGCCTTCTTAGTCTGTAGGTCTTTTCAGTCTGTTGTCCCAAGCCAACATGGTACTGGTATAATCTaGGACTTTGCATGGTTTCTT +
Preference number: 4 (lower is better)
Translates to: LLAFLVCRSFQSVVPSQHGTGII*DFAWFL
Trigger: AAGAAACCATGCAAAGTCTCAGATTATACCAGTACC...ATGTTGGCTTGGGACAACAGACTGAAAAGACCTACAGACTAAGAAGGCAAGAAG
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000107675.8
ENSMUST00000107678.8
ENSMUST00000107679.8
CDS-3UTR TCA 90 bp GCATCAAGAATTATATCCATCTCAGGACTCACACAACCCAGGACAACTTGCCACTCCATGGGCTGTGTATaGAACCTGGTTTTATTATTT +
Preference number: 4 (lower is better)
Translates to: ASRIISISGLTQPRTTCHSMGCV*NLVLLF
Trigger: AAATAATAAAACCAGGTTTCATACACAGCCCATGGA...GTGGCAAGTTGTCCTGGGTTGTGTGAGTCCTGAGATGGATATAATTCTTGATGC
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000107675.8
ENSMUST00000107678.8
ENSMUST00000107679.8
CDS-3UTR GCA 90 bp GCATCAAGAATTATATCCATCTCAGGACTCACACAACCCAGGACAACTTGCCACATCACTTGCATCATATaGTTCACTTGTGTTGGTTCA +
Preference number: 4 (lower is better)
Translates to: ASRIISISGLTQPRTTCHITCII*FTCVGS
Trigger: TGAACCAACACAAGTGAAGCATATGATGCAAGTGAT...GTGGCAAGTTGTCCTGGGTTGTGTGAGTCCTGAGATGGATATAATTCTTGATGC
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000107675.8
ENSMUST00000107678.8
ENSMUST00000107679.8
CDS-3UTR GCA 90 bp GCATCAAGAATTATATCCATCTCAGGACTCACACAACCCAGGACAACTTGCCACTTTGTATCAATTCTGTaGTGTCTGATATACGCACTC +
Preference number: 4 (lower is better)
Translates to: ASRIISISGLTQPRTTCHFVSIL*CLIYAL
Trigger: GAGTGCGTATATCAGACAGCACAGAATTGATACAAA...GTGGCAAGTTGTCCTGGGTTGTGTGAGTCCTGAGATGGATATAATTCTTGATGC
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000107675.8
ENSMUST00000107678.8
ENSMUST00000107679.8
CDS-3UTR GCA 90 bp GAAGATAAGCAGCCCGTGTTTGGATATTACTGCCACTCCTTTCTAGGTGACGGTCGTACAGTAGAAGTGTaGCCATATAAAGTATGTATA +
Preference number: 4 (lower is better)
Translates to: EDKQPVFGYYCHSFLGDGRTVEV*PYKVCI
Trigger: TATACATACTTTATATGGGCACACTTCTACTGTACG...ACCGTCACCTAGAAAGGAGTGGCAGTAATATCCAAACACGGGCTGCTTATCTTC
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000107675.8
ENSMUST00000107678.8
ENSMUST00000107679.8
CDS-3UTR GCA 90 bp CTTCTTGCCTTCTTAGTCTGTAGGTCTTTTCAGTCTGTTGTCCCAAGCCAACATTATGTTCATCTTCTCTaGTACTGTCATCAGACGGAT +
Preference number: 4 (lower is better)
Translates to: LLAFLVCRSFQSVVPSQHYVHLL*YCHQTD
Trigger: ATCCGTCTGATGACAGTAGCAGAGAAGATGAACATA...ATGTTGGCTTGGGACAACAGACTGAAAAGACCTACAGACTAAGAAGGCAAGAAG
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000107678.8
ENSMUST00000107679.8
CDS-3UTR GCA 90 bp CTTCTTGCCTTCTTAGTCTGTAGGTCTTTTCAGTCTGTTGTCCCAAGCCAACATGTGACATTGCTATTGTaGGTATGTTCATCTTCTCTG +
Preference number: 4 (lower is better)
Translates to: LLAFLVCRSFQSVVPSQHVTLLL*VCSSSL
Trigger: CAGAGAAGATGAACATACGCACAATAGCAATGTCAC...ATGTTGGCTTGGGACAACAGACTGAAAAGACCTACAGACTAAGAAGGCAAGAAG
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000107678.8
ENSMUST00000107679.8
CDS-3UTR CCA 90 bp GCATCAAGAATTATATCCATCTCAGGACTCACACAACCCAGGACAACTTGCCACCGAACTTCAGAACCATaGTCCAACTTTCTTTTCATT +
Preference number: 4 (lower is better)
Translates to: ASRIISISGLTQPRTTCHRTSEP*SNFLFI
Trigger: AATGAAAAGAAAGTTGGACCATGGTTCTGAAGTTCG...GTGGCAAGTTGTCCTGGGTTGTGTGAGTCCTGAGATGGATATAATTCTTGATGC
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000107678.8
ENSMUST00000107679.8
CDS-3UTR CCA 90 bp CTTCTTGCCTTCTTAGTCTGTAGGTCTTTTCAGTCTGTTGTCCCAAGCCAACATCGAACTTCAGAACCATaGTCCAACTTTCTTTTCATC +
Preference number: 4 (lower is better)
Translates to: LLAFLVCRSFQSVVPSQHRTSEP*SNFLFI
Trigger: GATGAAAAGAAAGTTGGACCATGGTTCTGAAGTTCG...ATGTTGGCTTGGGACAACAGACTGAAAAGACCTACAGACTAAGAAGGCAAGAAG
42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000107675.8
CDS-3UTR GCA 90 bp GCATCAAGAATTATATCCATCTCAGGACTCACACAACCCAGGACAACTTGCCACTATAATCTGAGACTTTaGATGGTTTCTTTCCCAAAG +
Preference number: 4 (lower is better)
Translates to: ASRIISISGLTQPRTTCHYNLRL*MVSFPK
Trigger: CTTTGGGAAAGAAACCATGCAAAGTCTCAGATTATA...GTGGCAAGTTGTCCTGGGTTGTGTGAGTCCTGAGATGGATATAATTCTTGATGC
41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000107675.8
ENSMUST00000107678.8
ENSMUST00000107679.8
CDS-3UTR GCA 90 bp CTTCTTGCCTTCTTAGTCTGTAGGTCTTTTCAGTCTGTTGTCCCAAGCCAACATTTTGTATCAATTCTGTaGTGTCTGATATACGCACTC +
Preference number: 4 (lower is better)
Translates to: LLAFLVCRSFQSVVPSQHFVSIL*CLIYAL
Trigger: GAGTGCGTATATCAGACAGCACAGAATTGATACAAA...ATGTTGGCTTGGGACAACAGACTGAAAAGACCTACAGACTAAGAAGGCAAGAAG
41% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000107675.8
ENSMUST00000107678.8
ENSMUST00000107679.8
CDS-3UTR CCA 90 bp CTTCTTGCCTTCTTAGTCTGTAGGTCTTTTCAGTCTGTTGTCCCAAGCCAACATCGAACTTCAGAACCATaGTCCAACTTTCTTTTCATT +
Preference number: 4 (lower is better)
Translates to: LLAFLVCRSFQSVVPSQHRTSEP*SNFLFI
Trigger: AATGAAAAGAAAGTTGGACCATGGTTCTGAAGTTCG...ATGTTGGCTTGGGACAACAGACTGAAAAGACCTACAGACTAAGAAGGCAAGAAG
41% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000107678.8
ENSMUST00000107679.8
CDS-3UTR GCA 90 bp CTTCTTGCCTTCTTAGTCTGTAGGTCTTTTCAGTCTGTTGTCCCAAGCCAACATCGTACAGTAGAAGTGTaGCCATATAAAGTATGTATA +
Preference number: 4 (lower is better)
Translates to: LLAFLVCRSFQSVVPSQHRTVEV*PYKVCI
Trigger: TATACATACTTTATATGGGCACACTTCTACTGTACG...ATGTTGGCTTGGGACAACAGACTGAAAAGACCTACAGACTAAGAAGGCAAGAAG
40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000107675.8
ENSMUST00000107678.8
ENSMUST00000107679.8
CDS GCA 90 bp CACTTGTCCTTGCTGGGTATCGTTCTGGTCTCCAGGCCTAGGGTTTaGACCCACAAGTTCACCATTCCGCGCAGTGTGCTCCTCCTCTTG +
Preference number: 5 (lower is better)
Translates to: HLSLLGIVLVSRPRV*THKFTIPRSVLLLL
Trigger: CAAGAGGAGGAGCACACTGCGCGGAATGGTGAACTTGTGGGTGCAAACCCTAGGCCTGGAGACCAGAACGATACCCAGCAAGGACAAGTG
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000107678.8
ENSMUST00000107679.8
CDS CCA 90 bp ATTCCGCGCAGTGTGCTCCTCCTCTTGATGTCTCGCTTGCTGCTGTaGATCCTCCTCAACCACGCGATTCATCTGTCCCTCATCAACCTG +
Preference number: 5 (lower is better)
Translates to: IPRSVLLLLMSRLLL*ILLNHAIHLSLINL
Trigger: CAGGTTGATGAGGGACAGATGAATCGCGTGGTTGAGGAGGATCCACAGCAGCAAGCGAGACATCAAGAGGAGGAGCACACTGCGCGGAAT
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000107678.8
ENSMUST00000107679.8
CDS CCA 90 bp TGTGGATCCTCCTCAACCACGCGATTCATCTGTCCCTCATCAACCTaGCTTGAGGAAGCATTCCCTCTCAGAGAGCCTCCAGTTCGTCGT +
Preference number: 5 (lower is better)
Translates to: CGSSSTTRFICPSST*LEEAFPLREPPVRR
Trigger: ACGACGAACTGGAGGCTCTCTGAGAGGGAATGCTTCCTCAAGCCAGGTTGATGAGGGACAGATGAATCGCGTGGTTGAGGAGGATCCACA
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000107678.8
ENSMUST00000107679.8
CDS-3UTR CAA 90 bp GTTGGATTTAGAGAGTCGTCTTGCCAAGCTGCCCCTCAGTCACAAGTGAGGCCTACAAGTCTGAGCCGCTaGCAGCAGGTCTTTGGGTTC +
Preference number: 5 (lower is better)
Translates to: VGFRESSCQAAPQSQVRPTSLSR*QQVFGF
Trigger: GAACCCAAAGACCTGCTGCAAGCGGCTCAGACTTGT...AGGCCTCACTTGTGACTGAGGGGCAGCTTGGCAAGACGACTCTCTAAATCCAAC
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000107675.8
ENSMUST00000107678.8
ENSMUST00000107679.8
CDS-3UTR CAA 90 bp GTTGGATTTAGAGAGTCGTCTTGCCAAGCTGCCCCTCAGTCACAAGTGAGGCCTCCAGTTCGTCGTCTTTaGCTGCCCACAGAGAGCAGT +
Preference number: 5 (lower is better)
Translates to: VGFRESSCQAAPQSQVRPPVRRL*LPTESS
Trigger: ACTGCTCTCTGTGGGCAGCAAAAGACGACGAACTGG...AGGCCTCACTTGTGACTGAGGGGCAGCTTGGCAAGACGACTCTCTAAATCCAAC
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000107678.8
ENSMUST00000107679.8
CDS-3UTR CAA 90 bp GCATCAAGAATTATATCCATCTCAGGACTCACACAACCCAGGACAACTTGCCACTGCTGCCCTTGCCCATaGGCTGCTCTCAGGTCCCCA +
Preference number: 5 (lower is better)
Translates to: ASRIISISGLTQPRTTCHCCPCP*AALRSP
Trigger: TGGGGACCTGAGAGCAGCCAATGGGCAAGGGCAGCA...GTGGCAAGTTGTCCTGGGTTGTGTGAGTCCTGAGATGGATATAATTCTTGATGC
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000107675.8
ENSMUST00000107678.8
ENSMUST00000107679.8
CDS-3UTR CAA 90 bp GTTGGATTTAGAGAGTCGTCTTGCCAAGCTGCCCCTCAGTCACAAGTGAGGCCTGCTTGCAGCAGGTCTTaGGGTTCCAGGAATGAAAGC +
Preference number: 5 (lower is better)
Translates to: VGFRESSCQAAPQSQVRPACSRS*GSRNES
Trigger: GCTTTCATTCCTGGAACCCAAAGACCTGCTGCAAGC...AGGCCTCACTTGTGACTGAGGGGCAGCTTGGCAAGACGACTCTCTAAATCCAAC
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000107675.8
ENSMUST00000107678.8
ENSMUST00000107679.8
CDS-3UTR CAA 90 bp GTTGGATTTAGAGAGTCGTCTTGCCAAGCTGCCCCTCAGTCACAAGTGAGGCCTTCCAGCACCAGGAGCTaGGTTTCCTCAGTTCCATTC +
Preference number: 5 (lower is better)
Translates to: VGFRESSCQAAPQSQVRPSSTRS*VSSVPF
Trigger: GAATGGAACTGAGGAAACCAAGCTCCTGGTGCTGGA...AGGCCTCACTTGTGACTGAGGGGCAGCTTGGCAAGACGACTCTCTAAATCCAAC
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000107675.8
ENSMUST00000107678.8
ENSMUST00000107679.8
CDS-3UTR CAA 90 bp GTTGGATTTAGAGAGTCGTCTTGCCAAGCTGCCCCTCAGTCACAAGTGAGGCCTTTCCTCCACTTGTCCTaGCTGGGTATCGTTCTGGTC +
Preference number: 5 (lower is better)
Translates to: VGFRESSCQAAPQSQVRPFLHLS*LGIVLV
Trigger: GACCAGAACGATACCCAGCAAGGACAAGTGGAGGAA...AGGCCTCACTTGTGACTGAGGGGCAGCTTGGCAAGACGACTCTCTAAATCCAAC
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000107678.8
ENSMUST00000107679.8
CDS TCA 90 bp ATCCTCCTCAACCACGCGATTCATCTGTCCCTCATCAACCTGGCTTaGGGAAGCATTCCCTCTCAGAGAGCCTCCAGTTCGTCGTCTTTT +
Preference number: 5 (lower is better)
Translates to: ILLNHAIHLSLINLA*GSIPSQRASSSSSF
Trigger: AAAAGACGACGAACTGGAGGCTCTCTGAGAGGGAATGCTTCCTCAAGCCAGGTTGATGAGGGACAGATGAATCGCGTGGTTGAGGAGGAT
52% GC, longest homopolymer 4 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000107678.8
ENSMUST00000107679.8
CDS-3UTR CAA 90 bp CTTCTTGCCTTCTTAGTCTGTAGGTCTTTTCAGTCTGTTGTCCCAAGCCAACATTGCTGCCCTTGCCCATaGGCTGCTCTCAGGTCCCCA +
Preference number: 5 (lower is better)
Translates to: LLAFLVCRSFQSVVPSQHCCPCP*AALRSP
Trigger: TGGGGACCTGAGAGCAGCCAATGGGCAAGGGCAGCA...ATGTTGGCTTGGGACAACAGACTGAAAAGACCTACAGACTAAGAAGGCAAGAAG
52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000107675.8
ENSMUST00000107678.8
ENSMUST00000107679.8
CDS-3UTR CAA 90 bp GTTGGATTTAGAGAGTCGTCTTGCCAAGCTGCCCCTCAGTCACAAGTGAGGCCTAGCACCTTAGGAGATTaGAGTTCTCCTCGTCTCCAG +
Preference number: 5 (lower is better)
Translates to: VGFRESSCQAAPQSQVRPSTLGD*SSPRLQ
Trigger: CTGGAGACGAGGAGAACTCAAATCTCCTAAGGTGCT...AGGCCTCACTTGTGACTGAGGGGCAGCTTGGCAAGACGACTCTCTAAATCCAAC
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000107675.8
ENSMUST00000107678.8
ENSMUST00000107679.8
CDS CCA 90 bp AAGCGGTTATTATTTTCCTCCACTTGTCCTTGCTGGGTATCGTTCTaGTCTCCAGGCCTAGGGTTTGCACCCACAAGTTCACCATTCCGC +
Preference number: 5 (lower is better)
Translates to: KRLLFSSTCPCWVSF*SPGLGFAPTSSPFR
Trigger: GCGGAATGGTGAACTTGTGGGTGCAAACCCTAGGCCTGGAGACCAGAACGATACCCAGCAAGGACAAGTGGAGGAAAATAATAACCGCTT
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000107678.8
ENSMUST00000107679.8
CDS CCA 90 bp TCTTCTCTGCTACTGTCATCAGACGGATCAAAATCATCACTCTCCTaGTCCATCTCCTCCTCCTCTTCCTCTTCCTCCTCTTCCTCCTCC +
Preference number: 5 (lower is better)
Translates to: SSLLLSSDGSKSSLS*SISSSSSSSSSSSS
Trigger: GGAGGAGGAAGAGGAGGAAGAGGAAGAGGAGGAGGAGATGGACCAGGAGAGTGATGATTTTGATCCGTCTGATGACAGTAGCAGAGAAGA
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000107678.8
ENSMUST00000107679.8
CDS-3UTR CAA 90 bp GTTGGATTTAGAGAGTCGTCTTGCCAAGCTGCCCCTCAGTCACAAGTGAGGCCTTCAGGTCCCCAAAAGTaGTTGGTGTTGCTGAACATG +
Preference number: 5 (lower is better)
Translates to: VGFRESSCQAAPQSQVRPSGPQK*LVLLNM
Trigger: CATGTTCAGCAACACCAACAACTTTTGGGGACCTGA...AGGCCTCACTTGTGACTGAGGGGCAGCTTGGCAAGACGACTCTCTAAATCCAAC
51% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 3 transcripts:
ENSMUST00000107675.8
ENSMUST00000107678.8
ENSMUST00000107679.8
CDS-3UTR CAA 90 bp GAAGATAAGCAGCCCGTGTTTGGATATTACTGCCACTCCTTTCTAGGTGACGGTAAGGCCTGTGGGTGGTaGGACAGATGTAATCCTCCG +
Preference number: 5 (lower is better)
Translates to: EDKQPVFGYYCHSFLGDGKACGW*DRCNPP
Trigger: CGGAGGATTACATCTGTCCAACCACCCACAGGCCTT...ACCGTCACCTAGAAAGGAGTGGCAGTAATATCCAAACACGGGCTGCTTATCTTC
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000107675.8
ENSMUST00000107678.8
ENSMUST00000107679.8
CDS-3UTR CAA 90 bp GAAGATAAGCAGCCCGTGTTTGGATATTACTGCCACTCCTTTCTAGGTGACGGTACAAGTCTGAGCCGCTaGCAGCAGGTCTTTGGGTTC +
Preference number: 5 (lower is better)
Translates to: EDKQPVFGYYCHSFLGDGTSLSR*QQVFGF
Trigger: GAACCCAAAGACCTGCTGCAAGCGGCTCAGACTTGT...ACCGTCACCTAGAAAGGAGTGGCAGTAATATCCAAACACGGGCTGCTTATCTTC
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000107675.8
ENSMUST00000107678.8
ENSMUST00000107679.8
CDS-3UTR CAA 90 bp GTTGGATTTAGAGAGTCGTCTTGCCAAGCTGCCCCTCAGTCACAAGTGAGGCCTCCACTAACTATGCGGTaGCCACAAAACTGTAGGCAT +
Preference number: 5 (lower is better)
Translates to: VGFRESSCQAAPQSQVRPPLTMR*PQNCRH
Trigger: ATGCCTACAGTTTTGTGGCAACCGCATAGTTAGTGG...AGGCCTCACTTGTGACTGAGGGGCAGCTTGGCAAGACGACTCTCTAAATCCAAC
51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000107675.8
ENSMUST00000107678.8
ENSMUST00000107679.8
CDS-3UTR CAA 90 bp GTTGGATTTAGAGAGTCGTCTTGCCAAGCTGCCCCTCAGTCACAAGTGAGGCCTCATCCCAGACTCGGATaGATGTATCAAGAGATCCAC +
Preference number: 5 (lower is better)
Translates to: VGFRESSCQAAPQSQVRPHPRLG*MYQEIH
Trigger: GTGGATCTCTTGATACATCAATCCGAGTCTGGGATG...AGGCCTCACTTGTGACTGAGGGGCAGCTTGGCAAGACGACTCTCTAAATCCAAC
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000107675.8
ENSMUST00000107678.8
ENSMUST00000107679.8
CDS TCA 90 bp AGGAGAGCTGGTGAGCGGGCAGGTCCGAGACACTACTGCAGTTTGTaGCATTGCTATTGTGCGTATGTTCATCTTCTCTGCTACTGTCAT +
Preference number: 5 (lower is better)
Translates to: RRAGERAGPRHYCSL*HCYCAYVHLLCYCH
Trigger: ATGACAGTAGCAGAGAAGATGAACATACGCACAATAGCAATGTCACAAACTGCAGTAGTGTCTCGGACCTGCCCGCTCACCAGCTCTCCT
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000107678.8
ENSMUST00000107679.8
CDS-3UTR CAA 90 bp GCATCAAGAATTATATCCATCTCAGGACTCACACAACCCAGGACAACTTGCCACAAGGCCTGTGGGTGGTaGGACAGATGTAATCCTCCG +
Preference number: 5 (lower is better)
Translates to: ASRIISISGLTQPRTTCHKACGW*DRCNPP
Trigger: CGGAGGATTACATCTGTCCAACCACCCACAGGCCTT...GTGGCAAGTTGTCCTGGGTTGTGTGAGTCCTGAGATGGATATAATTCTTGATGC
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000107675.8
ENSMUST00000107678.8
ENSMUST00000107679.8
CDS-3UTR CAA 90 bp GTTGGATTTAGAGAGTCGTCTTGCCAAGCTGCCCCTCAGTCACAAGTGAGGCCTCATCATATGCTTCACTaGTGTTGGTTCACAGCTGTC +
Preference number: 5 (lower is better)
Translates to: VGFRESSCQAAPQSQVRPHHMLH*CWFTAV
Trigger: GACAGCTGTGAACCAACACAAGTGAAGCATATGATG...AGGCCTCACTTGTGACTGAGGGGCAGCTTGGCAAGACGACTCTCTAAATCCAAC
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000107675.8
ENSMUST00000107678.8
ENSMUST00000107679.8
CDS-3UTR CAA 90 bp GCATCAAGAATTATATCCATCTCAGGACTCACACAACCCAGGACAACTTGCCACACAAGTCTGAGCCGCTaGCAGCAGGTCTTTGGGTTC +
Preference number: 5 (lower is better)
Translates to: ASRIISISGLTQPRTTCHTSLSR*QQVFGF
Trigger: GAACCCAAAGACCTGCTGCAAGCGGCTCAGACTTGT...GTGGCAAGTTGTCCTGGGTTGTGTGAGTCCTGAGATGGATATAATTCTTGATGC
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000107675.8
ENSMUST00000107678.8
ENSMUST00000107679.8
CDS-3UTR CAA 90 bp GAAGATAAGCAGCCCGTGTTTGGATATTACTGCCACTCCTTTCTAGGTGACGGTTTCAAGTCCCAGAGTTaGACCGTTCCGTCGTCTGAG +
Preference number: 5 (lower is better)
Translates to: EDKQPVFGYYCHSFLGDGFKSQS*TVPSSE
Trigger: CTCAGACGACGGAACGGTCAAACTCTGGGACTTGAA...ACCGTCACCTAGAAAGGAGTGGCAGTAATATCCAAACACGGGCTGCTTATCTTC
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000107675.8
ENSMUST00000107678.8
ENSMUST00000107679.8
CDS-3UTR CAA 90 bp GCATCAAGAATTATATCCATCTCAGGACTCACACAACCCAGGACAACTTGCCACCCAGTTCGTCGTCTTTaGCTGCCCACAGAGAGCAGT +
Preference number: 5 (lower is better)
Translates to: ASRIISISGLTQPRTTCHPVRRL*LPTESS
Trigger: ACTGCTCTCTGTGGGCAGCAAAAGACGACGAACTGG...GTGGCAAGTTGTCCTGGGTTGTGTGAGTCCTGAGATGGATATAATTCTTGATGC
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000107678.8
ENSMUST00000107679.8
CDS-3UTR CAA 90 bp GAAGATAAGCAGCCCGTGTTTGGATATTACTGCCACTCCTTTCTAGGTGACGGTCCTCATCAACCTGGCTaGAGGAAGCATTCCCTCTCA +
Preference number: 5 (lower is better)
Translates to: EDKQPVFGYYCHSFLGDGPHQPG*RKHSLS
Trigger: TGAGAGGGAATGCTTCCTCAAGCCAGGTTGATGAGG...ACCGTCACCTAGAAAGGAGTGGCAGTAATATCCAAACACGGGCTGCTTATCTTC
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000107678.8
ENSMUST00000107679.8
CDS-3UTR CAA 90 bp GAAGATAAGCAGCCCGTGTTTGGATATTACTGCCACTCCTTTCTAGGTGACGGTTTCCTCCACTTGTCCTaGCTGGGTATCGTTCTGGTC +
Preference number: 5 (lower is better)
Translates to: EDKQPVFGYYCHSFLGDGFLHLS*LGIVLV
Trigger: GACCAGAACGATACCCAGCAAGGACAAGTGGAGGAA...ACCGTCACCTAGAAAGGAGTGGCAGTAATATCCAAACACGGGCTGCTTATCTTC
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000107678.8
ENSMUST00000107679.8
CDS-3UTR CAA 90 bp GAAGATAAGCAGCCCGTGTTTGGATATTACTGCCACTCCTTTCTAGGTGACGGTAGCACCTTAGGAGATTaGAGTTCTCCTCGTCTCCAG +
Preference number: 5 (lower is better)
Translates to: EDKQPVFGYYCHSFLGDGSTLGD*SSPRLQ
Trigger: CTGGAGACGAGGAGAACTCAAATCTCCTAAGGTGCT...ACCGTCACCTAGAAAGGAGTGGCAGTAATATCCAAACACGGGCTGCTTATCTTC
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000107675.8
ENSMUST00000107678.8
ENSMUST00000107679.8
CDS-3UTR CAA 90 bp GTTGGATTTAGAGAGTCGTCTTGCCAAGCTGCCCCTCAGTCACAAGTGAGGCCTCCACTGATGATGATATaGTCTCTCATCTGTGATGAC +
Preference number: 5 (lower is better)
Translates to: VGFRESSCQAAPQSQVRPPLMMI*SLICDD
Trigger: GTCATCACAGATGAGAGACAATATCATCATCAGTGG...AGGCCTCACTTGTGACTGAGGGGCAGCTTGGCAAGACGACTCTCTAAATCCAAC
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000107675.8
ENSMUST00000107678.8
ENSMUST00000107679.8
CDS-3UTR CAA 90 bp GAAGATAAGCAGCCCGTGTTTGGATATTACTGCCACTCCTTTCTAGGTGACGGTTCAGCATTCCACACTTaGAGAGTCCGGTCAGTCGAT +
Preference number: 5 (lower is better)
Translates to: EDKQPVFGYYCHSFLGDGSAFHT*RVRSVD
Trigger: ATCGACTGACCGGACTCTCAAAGTGTGGAATGCTGA...ACCGTCACCTAGAAAGGAGTGGCAGTAATATCCAAACACGGGCTGCTTATCTTC
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000107675.8
ENSMUST00000107678.8
ENSMUST00000107679.8
CDS-3UTR CAA 90 bp GCATCAAGAATTATATCCATCTCAGGACTCACACAACCCAGGACAACTTGCCACCCTCATCAACCTGGCTaGAGGAAGCATTCCCTCTCA +
Preference number: 5 (lower is better)
Translates to: ASRIISISGLTQPRTTCHPHQPG*RKHSLS
Trigger: TGAGAGGGAATGCTTCCTCAAGCCAGGTTGATGAGG...GTGGCAAGTTGTCCTGGGTTGTGTGAGTCCTGAGATGGATATAATTCTTGATGC
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000107678.8
ENSMUST00000107679.8
CDS TCA 90 bp TCACTTGCATCATATGCTTCACTTGTGTTGGTTCACAGCTGTCAATaGGCTCATCTAAAGCCAGCAACTTCTCTGGTCCGCTCCAGCTCT +
Preference number: 5 (lower is better)
Translates to: SLASYASLVLVHSCQ*AHLKPATSLVRSSS
Trigger: AGAGCTGGAGCGGACCAGAGAAGTTGCTGGCTTTAGATGAGCTCATTGACAGCTGTGAACCAACACAAGTGAAGCATATGATGCAAGTGA
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000029727.8
ENSMUST00000107675.8
ENSMUST00000107678.8
ENSMUST00000107679.8
CDS GCA 90 bp GCGGGCAGGTCCGAGACACTACTGCAGTTTGTGACATTGCTATTGTaGGTATGTTCATCTTCTCTGCTACTGTCATCAGACGGATCAAAA +
Preference number: 5 (lower is better)
Translates to: AGRSETLLQFVTLLL*VCSSSLLLSSDGSK
Trigger: TTTTGATCCGTCTGATGACAGTAGCAGAGAAGATGAACATACGCACAATAGCAATGTCACAAACTGCAGTAGTGTCTCGGACCTGCCCGC
48% GC, longest homopolymer 4 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000107678.8
ENSMUST00000107679.8
CDS-3UTR CAA 90 bp GAAGATAAGCAGCCCGTGTTTGGATATTACTGCCACTCCTTTCTAGGTGACGGTGGTCCCCAAAAGTTGTaGGTGTTGCTGAACATGGTA +
Preference number: 5 (lower is better)
Translates to: EDKQPVFGYYCHSFLGDGGPQKL*VLLNMV
Trigger: TACCATGTTCAGCAACACCAACAACTTTTGGGGACC...ACCGTCACCTAGAAAGGAGTGGCAGTAATATCCAAACACGGGCTGCTTATCTTC
48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000107675.8
ENSMUST00000107678.8
ENSMUST00000107679.8
CDS-3UTR CAA 90 bp CTTCTTGCCTTCTTAGTCTGTAGGTCTTTTCAGTCTGTTGTCCCAAGCCAACATGCTTGCAGCAGGTCTTaGGGTTCCAGGAATGAAAGC +
Preference number: 5 (lower is better)
Translates to: LLAFLVCRSFQSVVPSQHACSRS*GSRNES
Trigger: GCTTTCATTCCTGGAACCCAAAGACCTGCTGCAAGC...ATGTTGGCTTGGGACAACAGACTGAAAAGACCTACAGACTAAGAAGGCAAGAAG
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000107675.8
ENSMUST00000107678.8
ENSMUST00000107679.8
CDS-3UTR CAA 90 bp GAAGATAAGCAGCCCGTGTTTGGATATTACTGCCACTCCTTTCTAGGTGACGGTCTCCTCGTCTCCAGTTaGTATCAATTCTGTGCTGTC +
Preference number: 5 (lower is better)
Translates to: EDKQPVFGYYCHSFLGDGLLVSS*YQFCAV
Trigger: GACAGCACAGAATTGATACAAACTGGAGACGAGGAG...ACCGTCACCTAGAAAGGAGTGGCAGTAATATCCAAACACGGGCTGCTTATCTTC
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000107675.8
ENSMUST00000107678.8
ENSMUST00000107679.8
CDS-3UTR CAA 90 bp GAAGATAAGCAGCCCGTGTTTGGATATTACTGCCACTCCTTTCTAGGTGACGGTCATCCCAGACTCGGATaGATGTATCAAGAGATCCAC +
Preference number: 5 (lower is better)
Translates to: EDKQPVFGYYCHSFLGDGHPRLG*MYQEIH
Trigger: GTGGATCTCTTGATACATCAATCCGAGTCTGGGATG...ACCGTCACCTAGAAAGGAGTGGCAGTAATATCCAAACACGGGCTGCTTATCTTC
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000107675.8
ENSMUST00000107678.8
ENSMUST00000107679.8
CDS-3UTR CAA 90 bp GTTGGATTTAGAGAGTCGTCTTGCCAAGCTGCCCCTCAGTCACAAGTGAGGCCTCCAGAGACAAGAATATaGTCTTTGAGTTCCATTCCA +
Preference number: 5 (lower is better)
Translates to: VGFRESSCQAAPQSQVRPPETRI*SLSSIP
Trigger: TGGAATGGAACTCAAAGACAATATTCTTGTCTCTGG...AGGCCTCACTTGTGACTGAGGGGCAGCTTGGCAAGACGACTCTCTAAATCCAAC
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000107675.8
ENSMUST00000107678.8
ENSMUST00000107679.8
CDS-3UTR CAA 90 bp CTTCTTGCCTTCTTAGTCTGTAGGTCTTTTCAGTCTGTTGTCCCAAGCCAACATTTCAAGTCCCAGAGTTaGACCGTTCCGTCGTCTGAG +
Preference number: 5 (lower is better)
Translates to: LLAFLVCRSFQSVVPSQHFKSQS*TVPSSE
Trigger: CTCAGACGACGGAACGGTCAAACTCTGGGACTTGAA...ATGTTGGCTTGGGACAACAGACTGAAAAGACCTACAGACTAAGAAGGCAAGAAG
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000107675.8
ENSMUST00000107678.8
ENSMUST00000107679.8
CDS GCA 90 bp TCATCTACTGAAATAAAGCGGTTATTATTTTCCTCCACTTGTCCTTaGTGGGTATCGTTCTGGTCTCCAGGCCTAGGGTTTGCACCCACA +
Preference number: 5 (lower is better)
Translates to: SSTEIKRLLFSSTCP*WVSFWSPGLGFAPT
Trigger: TGTGGGTGCAAACCCTAGGCCTGGAGACCAGAACGATACCCAGCAAGGACAAGTGGAGGAAAATAATAACCGCTTTATTTCAGTAGATGA
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000107678.8
ENSMUST00000107679.8
CDS CCA 90 bp AGTGCCAACTCTTTAGGAAGCAAGGAGATGAAGTCTCGCTGGAACTaGGGCTCTATCACTTGCATCATATGCTTCACTTGTGTTGGTTCA +
Preference number: 5 (lower is better)
Translates to: SANSLGSKEMKSRWN*GSITCIICFTCVGS
Trigger: TGAACCAACACAAGTGAAGCATATGATGCAAGTGATAGAGCCCCAGTTCCAGCGAGACTTCATCTCCTTGCTTCCTAAAGAGTTGGCACT
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000029727.8
ENSMUST00000107675.8
ENSMUST00000107678.8
ENSMUST00000107679.8
CDS CCA 90 bp CCACTAACTATGCGGTTGCCACAAAACTGTAGGCATGTGATCACATaGTCATCATGCCCTTTCAGCACCTTAGGAGATTTGAGTTCTCCT +
Preference number: 5 (lower is better)
Translates to: PLTMRLPQNCRHVIT*SSCPFSTLGDLSSP
Trigger: AGGAGAACTCAAATCTCCTAAGGTGCTGAAAGGGCATGATGACCATGTGATCACATGCCTACAGTTTTGTGGCAACCGCATAGTTAGTGG
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000029727.8
ENSMUST00000107675.8
ENSMUST00000107678.8
ENSMUST00000107679.8
CDS CCA 90 bp TCTACTGAAATAAAGCGGTTATTATTTTCCTCCACTTGTCCTTGCTaGGTATCGTTCTGGTCTCCAGGCCTAGGGTTTGCACCCACAAGT +
Preference number: 5 (lower is better)
Translates to: STEIKRLLFSSTCPC*VSFWSPGLGFAPTS
Trigger: ACTTGTGGGTGCAAACCCTAGGCCTGGAGACCAGAACGATACCCAGCAAGGACAAGTGGAGGAAAATAATAACCGCTTTATTTCAGTAGA
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000107678.8
ENSMUST00000107679.8
CDS-3UTR CAA 90 bp GAAGATAAGCAGCCCGTGTTTGGATATTACTGCCACTCCTTTCTAGGTGACGGTCAAAAGTTGTTGGTGTaGCTGAACATGGTACAAGGC +
Preference number: 5 (lower is better)
Translates to: EDKQPVFGYYCHSFLGDGQKLLV*LNMVQG
Trigger: GCCTTGTACCATGTTCAGCAACACCAACAACTTTTG...ACCGTCACCTAGAAAGGAGTGGCAGTAATATCCAAACACGGGCTGCTTATCTTC
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000107675.8
ENSMUST00000107678.8
ENSMUST00000107679.8
CDS-3UTR CAA 90 bp CTTCTTGCCTTCTTAGTCTGTAGGTCTTTTCAGTCTGTTGTCCCAAGCCAACATAGCACCTTAGGAGATTaGAGTTCTCCTCGTCTCCAG +
Preference number: 5 (lower is better)
Translates to: LLAFLVCRSFQSVVPSQHSTLGD*SSPRLQ
Trigger: CTGGAGACGAGGAGAACTCAAATCTCCTAAGGTGCT...ATGTTGGCTTGGGACAACAGACTGAAAAGACCTACAGACTAAGAAGGCAAGAAG
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000107675.8
ENSMUST00000107678.8
ENSMUST00000107679.8
CDS-3UTR CAA 90 bp CTTCTTGCCTTCTTAGTCTGTAGGTCTTTTCAGTCTGTTGTCCCAAGCCAACATTCAGCATTCCACACTTaGAGAGTCCGGTCAGTCGAT +
Preference number: 5 (lower is better)
Translates to: LLAFLVCRSFQSVVPSQHSAFHT*RVRSVD
Trigger: ATCGACTGACCGGACTCTCAAAGTGTGGAATGCTGA...ATGTTGGCTTGGGACAACAGACTGAAAAGACCTACAGACTAAGAAGGCAAGAAG
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000107675.8
ENSMUST00000107678.8
ENSMUST00000107679.8
CDS-3UTR CAA 90 bp GTTGGATTTAGAGAGTCGTCTTGCCAAGCTGCCCCTCAGTCACAAGTGAGGCCTACAAGAATATTGTCTTaGAGTTCCATTCCACTCGTT +
Preference number: 5 (lower is better)
Translates to: VGFRESSCQAAPQSQVRPTRILS*SSIPLV
Trigger: AACGAGTGGAATGGAACTCAAAGACAATATTCTTGT...AGGCCTCACTTGTGACTGAGGGGCAGCTTGGCAAGACGACTCTCTAAATCCAAC
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000107675.8
ENSMUST00000107678.8
ENSMUST00000107679.8
CDS-3UTR CAA 90 bp GTTGGATTTAGAGAGTCGTCTTGCCAAGCTGCCCCTCAGTCACAAGTGAGGCCTAAACACTGTCCTGTTTaGATATCCCAGATCTTAACT +
Preference number: 5 (lower is better)
Translates to: VGFRESSCQAAPQSQVRPKHCPV*ISQILT
Trigger: AGTTAAGATCTGGGATATCAAAACAGGACAGTGTTT...AGGCCTCACTTGTGACTGAGGGGCAGCTTGGCAAGACGACTCTCTAAATCCAAC
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000107675.8
ENSMUST00000107678.8
ENSMUST00000107679.8
CDS TCA 90 bp TTGAGTTCCATTCCACTCGTTAATGACTGGTGTCCTGTTAGCGTGTaGATACAATTCCCTGTCTCCACATCCCAGACTCGGATTGATGTA +
Preference number: 5 (lower is better)
Translates to: LSSIPLVNDWCPVSV*IQFPVSTSQTRIDV
Trigger: TACATCAATCCGAGTCTGGGATGTGGAGACAGGGAATTGTATTCACACGCTAACAGGACACCAGTCATTAACGAGTGGAATGGAACTCAA
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000029727.8
ENSMUST00000107675.8
ENSMUST00000107678.8
ENSMUST00000107679.8
CDS GCA 90 bp GAGATGAAGTCTCGCTGGAACTGGGGCTCTATCACTTGCATCATATaGTTCACTTGTGTTGGTTCACAGCTGTCAATGAGCTCATCTAAA +
Preference number: 5 (lower is better)
Translates to: EMKSRWNWGSITCII*FTCVGSQLSMSSSK
Trigger: TTTAGATGAGCTCATTGACAGCTGTGAACCAACACAAGTGAAGCATATGATGCAAGTGATAGAGCCCCAGTTCCAGCGAGACTTCATCTC
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000029727.8
ENSMUST00000107675.8
ENSMUST00000107678.8
ENSMUST00000107679.8
CDS-3UTR CAA 90 bp GCATCAAGAATTATATCCATCTCAGGACTCACACAACCCAGGACAACTTGCCACCAAAAGTTGTTGGTGTaGCTGAACATGGTACAAGGC +
Preference number: 5 (lower is better)
Translates to: ASRIISISGLTQPRTTCHQKLLV*LNMVQG
Trigger: GCCTTGTACCATGTTCAGCAACACCAACAACTTTTG...GTGGCAAGTTGTCCTGGGTTGTGTGAGTCCTGAGATGGATATAATTCTTGATGC
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000107675.8
ENSMUST00000107678.8
ENSMUST00000107679.8
CDS-3UTR CAA 90 bp CTTCTTGCCTTCTTAGTCTGTAGGTCTTTTCAGTCTGTTGTCCCAAGCCAACATGGTCCCCAAAAGTTGTaGGTGTTGCTGAACATGGTA +
Preference number: 5 (lower is better)
Translates to: LLAFLVCRSFQSVVPSQHGPQKL*VLLNMV
Trigger: TACCATGTTCAGCAACACCAACAACTTTTGGGGACC...ATGTTGGCTTGGGACAACAGACTGAAAAGACCTACAGACTAAGAAGGCAAGAAG
46% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 3 transcripts:
ENSMUST00000107675.8
ENSMUST00000107678.8
ENSMUST00000107679.8
CDS-3UTR CAA 90 bp CTTCTTGCCTTCTTAGTCTGTAGGTCTTTTCAGTCTGTTGTCCCAAGCCAACATCTCCTCGTCTCCAGTTaGTATCAATTCTGTGCTGTC +
Preference number: 5 (lower is better)
Translates to: LLAFLVCRSFQSVVPSQHLLVSS*YQFCAV
Trigger: GACAGCACAGAATTGATACAAACTGGAGACGAGGAG...ATGTTGGCTTGGGACAACAGACTGAAAAGACCTACAGACTAAGAAGGCAAGAAG
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000107675.8
ENSMUST00000107678.8
ENSMUST00000107679.8
CDS-3UTR CAA 90 bp GCATCAAGAATTATATCCATCTCAGGACTCACACAACCCAGGACAACTTGCCACGGGTCTTTTGCACTTTaGAGATCAACAGGAACCAAG +
Preference number: 5 (lower is better)
Translates to: ASRIISISGLTQPRTTCHGSFAL*RSTGTK
Trigger: CTTGGTTCCTGTTGATCTCAAAAGTGCAAAAGACCC...GTGGCAAGTTGTCCTGGGTTGTGTGAGTCCTGAGATGGATATAATTCTTGATGC
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000107675.8
CDS GCA 90 bp AATGCTAAATATCTTCATCACAGTCTGATGTGGCAGAGGGTCTTTTaGACTTTTGAGATCAACAGGAACCAAGCCATGGTTCACAGGAGC +
Preference number: 5 (lower is better)
Translates to: NAKYLHHSLMWQRVF*TFEINRNQAMVHRS
Trigger: GCTCCTGTGAACCATGGCTTGGTTCCTGTTGATCTCAAAAGTGCAAAAGACCCTCTGCCACATCAGACTGTGATGAAGATATTTAGCATT
44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000107675.8
CDS-3UTR CAA 90 bp CTTCTTGCCTTCTTAGTCTGTAGGTCTTTTCAGTCTGTTGTCCCAAGCCAACATCAAAAGTTGTTGGTGTaGCTGAACATGGTACAAGGC +
Preference number: 5 (lower is better)
Translates to: LLAFLVCRSFQSVVPSQHQKLLV*LNMVQG
Trigger: GCCTTGTACCATGTTCAGCAACACCAACAACTTTTG...ATGTTGGCTTGGGACAACAGACTGAAAAGACCTACAGACTAAGAAGGCAAGAAG
44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000107675.8
ENSMUST00000107678.8
ENSMUST00000107679.8
CDS-3UTR CAA 90 bp CTTCTTGCCTTCTTAGTCTGTAGGTCTTTTCAGTCTGTTGTCCCAAGCCAACATCATCATATGCTTCACTaGTGTTGGTTCACAGCTGTC +
Preference number: 5 (lower is better)
Translates to: LLAFLVCRSFQSVVPSQHHHMLH*CWFTAV
Trigger: GACAGCTGTGAACCAACACAAGTGAAGCATATGATG...ATGTTGGCTTGGGACAACAGACTGAAAAGACCTACAGACTAAGAAGGCAAGAAG
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000107675.8
ENSMUST00000107678.8
ENSMUST00000107679.8
CDS-3UTR CAA 90 bp GCATCAAGAATTATATCCATCTCAGGACTCACACAACCCAGGACAACTTGCCACCCACTGATGATGATATaGTCTCTCATCTGTGATGAC +
Preference number: 5 (lower is better)
Translates to: ASRIISISGLTQPRTTCHPLMMI*SLICDD
Trigger: GTCATCACAGATGAGAGACAATATCATCATCAGTGG...GTGGCAAGTTGTCCTGGGTTGTGTGAGTCCTGAGATGGATATAATTCTTGATGC
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000107675.8
ENSMUST00000107678.8
ENSMUST00000107679.8
CDS-3UTR CAA 90 bp GAAGATAAGCAGCCCGTGTTTGGATATTACTGCCACTCCTTTCTAGGTGACGGTCCAGAGACAAGAATATaGTCTTTGAGTTCCATTCCA +
Preference number: 5 (lower is better)
Translates to: EDKQPVFGYYCHSFLGDGPETRI*SLSSIP
Trigger: TGGAATGGAACTCAAAGACAATATTCTTGTCTCTGG...ACCGTCACCTAGAAAGGAGTGGCAGTAATATCCAAACACGGGCTGCTTATCTTC
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000107675.8
ENSMUST00000107678.8
ENSMUST00000107679.8
CDS-3UTR CAA 90 bp GAAGATAAGCAGCCCGTGTTTGGATATTACTGCCACTCCTTTCTAGGTGACGGTGTAATTACGAAGTTCTaGTTGAACTGTAAGCAGGTC +
Preference number: 5 (lower is better)
Translates to: EDKQPVFGYYCHSFLGDGVITKF*LNCKQV
Trigger: GACCTGCTTACAGTTCAACAAGAACTTCGTAATTAC...ACCGTCACCTAGAAAGGAGTGGCAGTAATATCCAAACACGGGCTGCTTATCTTC
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000107675.8
ENSMUST00000107678.8
ENSMUST00000107679.8
CDS-3UTR CAA 90 bp GCATCAAGAATTATATCCATCTCAGGACTCACACAACCCAGGACAACTTGCCACATTATTTTCCTCCACTaGTCCTTGCTGGGTATCGTT +
Preference number: 5 (lower is better)
Translates to: ASRIISISGLTQPRTTCHIIFLH*SLLGIV
Trigger: AACGATACCCAGCAAGGACAAGTGGAGGAAAATAAT...GTGGCAAGTTGTCCTGGGTTGTGTGAGTCCTGAGATGGATATAATTCTTGATGC
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000107678.8
ENSMUST00000107679.8
CDS TCA 90 bp ATCTTCCTCTTGCTCTTCCTGATTTCCCGAAGAGTCCTCATCTACTaGAATAAAGCGGTTATTATTTTCCTCCACTTGTCCTTGCTGGGT +
Preference number: 5 (lower is better)
Translates to: IFLLLFLISRRVLIY*NKAVIIFLHLSLLG
Trigger: ACCCAGCAAGGACAAGTGGAGGAAAATAATAACCGCTTTATTTCAGTAGATGAGGACTCTTCGGGAAATCAGGAAGAGCAAGAGGAAGAT
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000107678.8
ENSMUST00000107679.8
CDS-3UTR CAA 90 bp CTTCTTGCCTTCTTAGTCTGTAGGTCTTTTCAGTCTGTTGTCCCAAGCCAACATCCACTGATGATGATATaGTCTCTCATCTGTGATGAC +
Preference number: 5 (lower is better)
Translates to: LLAFLVCRSFQSVVPSQHPLMMI*SLICDD
Trigger: GTCATCACAGATGAGAGACAATATCATCATCAGTGG...ATGTTGGCTTGGGACAACAGACTGAAAAGACCTACAGACTAAGAAGGCAAGAAG
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000107675.8
ENSMUST00000107678.8
ENSMUST00000107679.8
CDS-3UTR CAA 90 bp GAAGATAAGCAGCCCGTGTTTGGATATTACTGCCACTCCTTTCTAGGTGACGGTACAAGAATATTGTCTTaGAGTTCCATTCCACTCGTT +
Preference number: 5 (lower is better)
Translates to: EDKQPVFGYYCHSFLGDGTRILS*SSIPLV
Trigger: AACGAGTGGAATGGAACTCAAAGACAATATTCTTGT...ACCGTCACCTAGAAAGGAGTGGCAGTAATATCCAAACACGGGCTGCTTATCTTC
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000107675.8
ENSMUST00000107678.8
ENSMUST00000107679.8
CDS-3UTR CAA 90 bp GCATCAAGAATTATATCCATCTCAGGACTCACACAACCCAGGACAACTTGCCACGTAATTACGAAGTTCTaGTTGAACTGTAAGCAGGTC +
Preference number: 5 (lower is better)
Translates to: ASRIISISGLTQPRTTCHVITKF*LNCKQV
Trigger: GACCTGCTTACAGTTCAACAAGAACTTCGTAATTAC...GTGGCAAGTTGTCCTGGGTTGTGTGAGTCCTGAGATGGATATAATTCTTGATGC
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000107675.8
ENSMUST00000107678.8
ENSMUST00000107679.8
CDS-3UTR CAA 90 bp GCATCAAGAATTATATCCATCTCAGGACTCACACAACCCAGGACAACTTGCCACACAAGAATATTGTCTTaGAGTTCCATTCCACTCGTT +
Preference number: 5 (lower is better)
Translates to: ASRIISISGLTQPRTTCHTRILS*SSIPLV
Trigger: AACGAGTGGAATGGAACTCAAAGACAATATTCTTGT...GTGGCAAGTTGTCCTGGGTTGTGTGAGTCCTGAGATGGATATAATTCTTGATGC
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000107675.8
ENSMUST00000107678.8
ENSMUST00000107679.8
CDS-3UTR CAA 90 bp CTTCTTGCCTTCTTAGTCTGTAGGTCTTTTCAGTCTGTTGTCCCAAGCCAACATCCAGAGACAAGAATATaGTCTTTGAGTTCCATTCCA +
Preference number: 5 (lower is better)
Translates to: LLAFLVCRSFQSVVPSQHPETRI*SLSSIP
Trigger: TGGAATGGAACTCAAAGACAATATTCTTGTCTCTGG...ATGTTGGCTTGGGACAACAGACTGAAAAGACCTACAGACTAAGAAGGCAAGAAG
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000107675.8
ENSMUST00000107678.8
ENSMUST00000107679.8
CDS-3UTR CAA 90 bp GCATCAAGAATTATATCCATCTCAGGACTCACACAACCCAGGACAACTTGCCACAAACACTGTCCTGTTTaGATATCCCAGATCTTAACT +
Preference number: 5 (lower is better)
Translates to: ASRIISISGLTQPRTTCHKHCPV*ISQILT
Trigger: AGTTAAGATCTGGGATATCAAAACAGGACAGTGTTT...GTGGCAAGTTGTCCTGGGTTGTGTGAGTCCTGAGATGGATATAATTCTTGATGC
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000107675.8
ENSMUST00000107678.8
ENSMUST00000107679.8
CDS-3UTR CAA 90 bp CTTCTTGCCTTCTTAGTCTGTAGGTCTTTTCAGTCTGTTGTCCCAAGCCAACATAAACACTGTCCTGTTTaGATATCCCAGATCTTAACT +
Preference number: 5 (lower is better)
Translates to: LLAFLVCRSFQSVVPSQHKHCPV*ISQILT
Trigger: AGTTAAGATCTGGGATATCAAAACAGGACAGTGTTT...ATGTTGGCTTGGGACAACAGACTGAAAAGACCTACAGACTAAGAAGGCAAGAAG
41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000107675.8
ENSMUST00000107678.8
ENSMUST00000107679.8
CDS CCA 90 bp CCAGTTTGTATCAATTCTGTGCTGTCTGATATACGCACTCTTCCATaGGCTGTGTATGAAACCTGGTTTTATTATTTTTCTTCTCTTGAT +
Preference number: 5 (lower is better)
Translates to: PVCINSVLSDIRTLP*AVYETWFYYFSSLD
Trigger: ATCAAGAGAAGAAAAATAATAAAACCAGGTTTCATACACAGCCCATGGAAGAGTGCGTATATCAGACAGCACAGAATTGATACAAACTGG
38% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 4 transcripts:
ENSMUST00000029727.8
ENSMUST00000107675.8
ENSMUST00000107678.8
ENSMUST00000107679.8
CDS GCA 72 bp CCTGTGGGTGGTTGGACAGATGTAATCCTCCGCCGCTaGTGCCCTTGCCCATTGGCTGCTCTCAGGTCCCCA +
Preference number: 6 (lower is better)
Translates to: PVGGWTDVILRR*CPCPLAALRSP
Trigger: TGGGGACCTGAGAGCAGCCAATGGGCAAGGGCAGCAGCGGCGGAGGATTACATCTGTCCAACCACCCACAGG
62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000029727.8
ENSMUST00000107675.8
ENSMUST00000107678.8
ENSMUST00000107679.8
CDS TCA 72 bp ATTCCGACTCCCGACTGCACACACCAGCTTTGTGTTTaGGGCCCTGATCCGCCACACAACTCCCCCGCTCCC +
Preference number: 6 (lower is better)
Translates to: IPTPDCTHQLCV*GPDPPHNSPAP
Trigger: GGGAGCGGGGGAGTTGTGTGGCGGATCAGGGCCTCAAACACAAAGCTGGTGTGTGCAGTCGGGAGTCGGAAT
61% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 4 transcripts:
ENSMUST00000029727.8
ENSMUST00000107675.8
ENSMUST00000107678.8
ENSMUST00000107679.8
CDS GCA 72 bp GTGGGTGGTTGGACAGATGTAATCCTCCGCCGCTGCTaGCCTTGCCCATTGGCTGCTCTCAGGTCCCCAAAA +
Preference number: 6 (lower is better)
Translates to: VGGWTDVILRRC*PCPLAALRSPK
Trigger: TTTTGGGGACCTGAGAGCAGCCAATGGGCAAGGGCAGCAGCGGCGGAGGATTACATCTGTCCAACCACCCAC
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000029727.8
ENSMUST00000107675.8
ENSMUST00000107678.8
ENSMUST00000107679.8
CDS GCA 72 bp TTGCTGGGTATCGTTCTGGTCTCCAGGCCTAGGGTTTaGACCCACAAGTTCACCATTCCGCGCAGTGTGCTC +
Preference number: 6 (lower is better)
Translates to: LLGIVLVSRPRV*THKFTIPRSVL
Trigger: GAGCACACTGCGCGGAATGGTGAACTTGTGGGTGCAAACCCTAGGCCTGGAGACCAGAACGATACCCAGCAA
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000107678.8
ENSMUST00000107679.8
CDS CAA 90 bp GGTGGTTGGACAGATGTAATCCTCCGCCGCTGCTGCCCTTGCCCATaGGCTGCTCTCAGGTCCCCAAAAGTTGTTGGTGTTGCTGAACAT +
Preference number: 6 (lower is better)
Translates to: GGWTDVILRRCCPCP*AALRSPKVVGVAEH
Trigger: ATGTTCAGCAACACCAACAACTTTTGGGGACCTGAGAGCAGCCAATGGGCAAGGGCAGCAGCGGCGGAGGATTACATCTGTCCAACCACC
56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000029727.8
ENSMUST00000107675.8
ENSMUST00000107678.8
ENSMUST00000107679.8
CDS CAA 90 bp CAACTTCTCTGGTCCGCTCCAGCTCTGAAACATTTTCAGCCACTCTaGAAGGCCTGTGGGTGGTTGGACAGATGTAATCCTCCGCCGCTG +
Preference number: 6 (lower is better)
Translates to: QLLWSAPALKHFQPL*KACGWLDRCNPPPL
Trigger: CAGCGGCGGAGGATTACATCTGTCCAACCACCCACAGGCCTTCAAGAGTGGCTGAAAATGTTTCAGAGCTGGAGCGGACCAGAGAAGTTG
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000029727.8
ENSMUST00000107675.8
ENSMUST00000107678.8
ENSMUST00000107679.8
CDS TCA 72 bp AACCACGCGATTCATCTGTCCCTCATCAACCTGGCTTaGGGAAGCATTCCCTCTCAGAGAGCCTCCAGTTCG +
Preference number: 6 (lower is better)
Translates to: NHAIHLSLINLA*GSIPSQRASSS
Trigger: CGAACTGGAGGCTCTCTGAGAGGGAATGCTTCCTCAAGCCAGGTTGATGAGGGACAGATGAATCGCGTGGTT
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000107678.8
ENSMUST00000107679.8
CDS CCA 72 bp TCCTCAACCACGCGATTCATCTGTCCCTCATCAACCTaGCTTGAGGAAGCATTCCCTCTCAGAGAGCCTCCA +
Preference number: 6 (lower is better)
Translates to: SSTTRFICPSST*LEEAFPLREPP
Trigger: TGGAGGCTCTCTGAGAGGGAATGCTTCCTCAAGCCAGGTTGATGAGGGACAGATGAATCGCGTGGTTGAGGA
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000107678.8
ENSMUST00000107679.8
CDS CAA 72 bp AAACATTTTCAGCCACTCTTGAAGGCCTGTGGGTGGTaGGACAGATGTAATCCTCCGCCGCTGCTGCCCTTG +
Preference number: 6 (lower is better)
Translates to: KHFQPLLKACGW*DRCNPPPLLPL
Trigger: CAAGGGCAGCAGCGGCGGAGGATTACATCTGTCCAACCACCCACAGGCCTTCAAGAGTGGCTGAAAATGTTT
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000029727.8
ENSMUST00000107675.8
ENSMUST00000107678.8
ENSMUST00000107679.8
CDS CAA 72 bp CAACCACGCGATTCATCTGTCCCTCATCAACCTGGCTaGAGGAAGCATTCCCTCTCAGAGAGCCTCCAGTTC +
Preference number: 6 (lower is better)
Translates to: QPRDSSVPHQPG*RKHSLSESLQF
Trigger: GAACTGGAGGCTCTCTGAGAGGGAATGCTTCCTCAAGCCAGGTTGATGAGGGACAGATGAATCGCGTGGTTG
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000107678.8
ENSMUST00000107679.8
CDS CAA 90 bp GATCCTCCTCAACCACGCGATTCATCTGTCCCTCATCAACCTGGCTaGAGGAAGCATTCCCTCTCAGAGAGCCTCCAGTTCGTCGTCTTT +
Preference number: 6 (lower is better)
Translates to: DPPQPRDSSVPHQPG*RKHSLSESLQFVVF
Trigger: AAAGACGACGAACTGGAGGCTCTCTGAGAGGGAATGCTTCCTCAAGCCAGGTTGATGAGGGACAGATGAATCGCGTGGTTGAGGAGGATC
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000107678.8
ENSMUST00000107679.8
CDS CAA 72 bp CTTGCCCATTGGCTGCTCTCAGGTCCCCAAAAGTTGTaGGTGTTGCTGAACATGGTACAAGGCCAGTGGTAC +
Preference number: 6 (lower is better)
Translates to: LAHWLLSGPQKL*VLLNMVQGQWY
Trigger: GTACCACTGGCCTTGTACCATGTTCAGCAACACCAACAACTTTTGGGGACCTGAGAGCAGCCAATGGGCAAG
53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000029727.8
ENSMUST00000107675.8
ENSMUST00000107678.8
ENSMUST00000107679.8
CDS CAA 90 bp GCTGCTGCCCTTGCCCATTGGCTGCTCTCAGGTCCCCAAAAGTTGTaGGTGTTGCTGAACATGGTACAAGGCCAGTGGTACTGGTATAAT +
Preference number: 6 (lower is better)
Translates to: AAALAHWLLSGPQKL*VLLNMVQGQWYWYN
Trigger: ATTATACCAGTACCACTGGCCTTGTACCATGTTCAGCAACACCAACAACTTTTGGGGACCTGAGAGCAGCCAATGGGCAAGGGCAGCAGC
52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000029727.8
ENSMUST00000107675.8
ENSMUST00000107678.8
ENSMUST00000107679.8
CDS CAA 90 bp GCCCTTGCCCATTGGCTGCTCTCAGGTCCCCAAAAGTTGTTGGTGTaGCTGAACATGGTACAAGGCCAGTGGTACTGGTATAATCTGAGA +
Preference number: 6 (lower is better)
Translates to: ALAHWLLSGPQKLLV*LNMVQGQWYWYNLR
Trigger: TCTCAGATTATACCAGTACCACTGGCCTTGTACCATGTTCAGCAACACCAACAACTTTTGGGGACCTGAGAGCAGCCAATGGGCAAGGGC
51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000029727.8
ENSMUST00000107675.8
ENSMUST00000107678.8
ENSMUST00000107679.8
CDS TCA 72 bp CGTGTAAACACTGGCCGGTCTCAATATCCCAAACCCTaGGAGTGGCATCTCGAGAACCGCTTACAACCCTTT +
Preference number: 6 (lower is better)
Translates to: RVNTGRSQYPKP*EWHLENRLQPF
Trigger: AAAGGGTTGTAAGCGGTTCTCGAGATGCCACTCTCAGGGTTTGGGATATTGAGACCGGCCAGTGTTTACACG
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000029727.8
ENSMUST00000107675.8
ENSMUST00000107678.8
ENSMUST00000107679.8
CDS TCA 72 bp GGTGAGCGGGCAGGTCCGAGACACTACTGCAGTTTGTaGCATTGCTATTGTGCGTATGTTCATCTTCTCTGC +
Preference number: 6 (lower is better)
Translates to: GERAGPRHYCSL*HCYCAYVHLLC
Trigger: GCAGAGAAGATGAACATACGCACAATAGCAATGTCACAAACTGCAGTAGTGTCTCGGACCTGCCCGCTCACC
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000107678.8
ENSMUST00000107679.8
CDS CCA 72 bp TTATTTTCCTCCACTTGTCCTTGCTGGGTATCGTTCTaGTCTCCAGGCCTAGGGTTTGCACCCACAAGTTCA +
Preference number: 6 (lower is better)
Translates to: LFSSTCPCWVSF*SPGLGFAPTSS
Trigger: TGAACTTGTGGGTGCAAACCCTAGGCCTGGAGACCAGAACGATACCCAGCAAGGACAAGTGGAGGAAAATAA
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000107678.8
ENSMUST00000107679.8
CDS CAA 72 bp GCGGGCAGGTCCGAGACACTACTGCAGTTTGTGACATaGCTATTGTGCGTATGTTCATCTTCTCTGCTACTG +
Preference number: 6 (lower is better)
Translates to: AGRSETLLQFVT*LLCVCSSSLLL
Trigger: CAGTAGCAGAGAAGATGAACATACGCACAATAGCAATGTCACAAACTGCAGTAGTGTCTCGGACCTGCCCGC
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000107678.8
ENSMUST00000107679.8
CDS TCA 72 bp ATTCCACTCGTTAATGACTGGTGTCCTGTTAGCGTGTaGATACAATTCCCTGTCTCCACATCCCAGACTCGG +
Preference number: 6 (lower is better)
Translates to: IPLVNDWCPVSV*IQFPVSTSQTR
Trigger: CCGAGTCTGGGATGTGGAGACAGGGAATTGTATTCACACGCTAACAGGACACCAGTCATTAACGAGTGGAAT
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000029727.8
ENSMUST00000107675.8
ENSMUST00000107678.8
ENSMUST00000107679.8
CDS TCA 72 bp TCACAGTCTGATGTGGCAGAGGGTCTTTTGCACTTTTaGGATCAACAGGAACCAAGCCATGGTTCACAGGAG +
Preference number: 6 (lower is better)
Translates to: SQSDVAEGLLHF*DQQEPSHGSQE
Trigger: CTCCTGTGAACCATGGCTTGGTTCCTGTTGATCTCAAAAGTGCAAAAGACCCTCTGCCACATCAGACTGTGA
49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000107675.8
CDS GCA 72 bp TCTCGCTGGAACTGGGGCTCTATCACTTGCATCATATaGTTCACTTGTGTTGGTTCACAGCTGTCAATGAGC +
Preference number: 6 (lower is better)
Translates to: SRWNWGSITCII*FTCVGSQLSMS
Trigger: GCTCATTGACAGCTGTGAACCAACACAAGTGAAGCATATGATGCAAGTGATAGAGCCCCAGTTCCAGCGAGA
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000029727.8
ENSMUST00000107675.8
ENSMUST00000107678.8
ENSMUST00000107679.8
CDS CAA 72 bp GGAGATGAAGTCTCGCTGGAACTGGGGCTCTATCACTaGCATCATATGCTTCACTTGTGTTGGTTCACAGCT +
Preference number: 6 (lower is better)
Translates to: GDEVSLELGLYH*HHMLHLCWFTA
Trigger: AGCTGTGAACCAACACAAGTGAAGCATATGATGCAAGTGATAGAGCCCCAGTTCCAGCGAGACTTCATCTCC
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000029727.8
ENSMUST00000107675.8
ENSMUST00000107678.8
ENSMUST00000107679.8
CDS CAA 90 bp AGGAAGCAAGGAGATGAAGTCTCGCTGGAACTGGGGCTCTATCACTaGCATCATATGCTTCACTTGTGTTGGTTCACAGCTGTCAATGAG +
Preference number: 6 (lower is better)
Translates to: RKQGDEVSLELGLYH*HHMLHLCWFTAVNE
Trigger: CTCATTGACAGCTGTGAACCAACACAAGTGAAGCATATGATGCAAGTGATAGAGCCCCAGTTCCAGCGAGACTTCATCTCCTTGCTTCCT
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000029727.8
ENSMUST00000107675.8
ENSMUST00000107678.8
ENSMUST00000107679.8
CDS CAA 90 bp TTCCACACTTTGAGAGTCCGGTCAGTCGATCCACTGATGATGATATaGTCTCTCATCTGTGATGACCACACTCCACCTGTATGTCCCACT +
Preference number: 6 (lower is better)
Translates to: FHTLRVRSVDPLMMI*SLICDDHTPPVCPT
Trigger: AGTGGGACATACAGGTGGAGTGTGGTCATCACAGATGAGAGACAATATCATCATCAGTGGATCGACTGACCGGACTCTCAAAGTGTGGAA
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000029727.8
ENSMUST00000107675.8
ENSMUST00000107678.8
ENSMUST00000107679.8
CDS CAA 90 bp GTGACGAGGTTTCGGATAAATTCACCCGTTTTCAAGTCCCAGAGTTaGACCGTTCCGTCGTCTGAGCTGGTAATTACGAAGTTCTTGTTG +
Preference number: 6 (lower is better)
Translates to: VTRFRINSPVFKSQS*TVPSSELVITKFLL
Trigger: CAACAAGAACTTCGTAATTACCAGCTCAGACGACGGAACGGTCAAACTCTGGGACTTGAAAACGGGTGAATTTATCCGAAACCTCGTCAC
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000029727.8
ENSMUST00000107675.8
ENSMUST00000107678.8
ENSMUST00000107679.8
CDS TCA 72 bp AATACAATTCCCTGTCTCCACATCCCAGACTCGGATTaGTGTATCAAGAGATCCACTCACCACATGGATGCC +
Preference number: 6 (lower is better)
Translates to: NTIPCLHIPDSD*CIKRSTHHMDA
Trigger: GGCATCCATGTGGTGAGTGGATCTCTTGATACATCAATCCGAGTCTGGGATGTGGAGACAGGGAATTGTATT
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000029727.8
ENSMUST00000107675.8
ENSMUST00000107678.8
ENSMUST00000107679.8
CDS CCA 72 bp ATGCGGTTGCCACAAAACTGTAGGCATGTGATCACATaGTCATCATGCCCTTTCAGCACCTTAGGAGATTTG +
Preference number: 6 (lower is better)
Translates to: MRLPQNCRHVIT*SSCPFSTLGDL
Trigger: CAAATCTCCTAAGGTGCTGAAAGGGCATGATGACCATGTGATCACATGCCTACAGTTTTGTGGCAACCGCAT
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000029727.8
ENSMUST00000107675.8
ENSMUST00000107678.8
ENSMUST00000107679.8
CDS CAA 72 bp TTGAGAGTCCGGTCAGTCGATCCACTGATGATGATATaGTCTCTCATCTGTGATGACCACACTCCACCTGTA +
Preference number: 6 (lower is better)
Translates to: LRVRSVDPLMMI*SLICDDHTPPV
Trigger: TACAGGTGGAGTGTGGTCATCACAGATGAGAGACAATATCATCATCAGTGGATCGACTGACCGGACTCTCAA
47% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000029727.8
ENSMUST00000107675.8
ENSMUST00000107678.8
ENSMUST00000107679.8
CDS CAA 72 bp GAATACAATTCCCTGTCTCCACATCCCAGACTCGGATaGATGTATCAAGAGATCCACTCACCACATGGATGC +
Preference number: 6 (lower is better)
Translates to: EYNSLSPHPRLG*MYQEIHSPHGC
Trigger: GCATCCATGTGGTGAGTGGATCTCTTGATACATCAATCCGAGTCTGGGATGTGGAGACAGGGAATTGTATTC
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000029727.8
ENSMUST00000107675.8
ENSMUST00000107678.8
ENSMUST00000107679.8
CDS CAA 90 bp TTAGCGTGTGAATACAATTCCCTGTCTCCACATCCCAGACTCGGATaGATGTATCAAGAGATCCACTCACCACATGGATGCCATCAAACT +
Preference number: 6 (lower is better)
Translates to: LACEYNSLSPHPRLG*MYQEIHSPHGCHQT
Trigger: AGTTTGATGGCATCCATGTGGTGAGTGGATCTCTTGATACATCAATCCGAGTCTGGGATGTGGAGACAGGGAATTGTATTCACACGCTAA
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000029727.8
ENSMUST00000107675.8
ENSMUST00000107678.8
ENSMUST00000107679.8
CDS TCA 72 bp AAGTTCTTGTTGAACTGTAAGCAGGTCACAGCGCTCTaGTGCTTGCTGGGACCTTGCAAAGTTTGTAAACAC +
Preference number: 6 (lower is better)
Translates to: KFLLNCKQVTAL*CLLGPCKVCKH
Trigger: GTGTTTACAAACTTTGCAAGGTCCCAGCAAGCATCAGAGCGCTGTGACCTGCTTACAGTTCAACAAGAACTT
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000029727.8
ENSMUST00000107675.8
ENSMUST00000107678.8
ENSMUST00000107679.8
CDS GCA 72 bp CCACAAAACTGTAGGCATGTGATCACATGGTCATCATaGCCTTTCAGCACCTTAGGAGATTTGAGTTCTCCT +
Preference number: 6 (lower is better)
Translates to: PQNCRHVITWSS*PFSTLGDLSSP
Trigger: AGGAGAACTCAAATCTCCTAAGGTGCTGAAAGGGCATGATGACCATGTGATCACATGCCTACAGTTTTGTGG
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000029727.8
ENSMUST00000107675.8
ENSMUST00000107678.8
ENSMUST00000107679.8
CDS GCA 72 bp GAAATAAAGCGGTTATTATTTTCCTCCACTTGTCCTTaGTGGGTATCGTTCTGGTCTCCAGGCCTAGGGTTT +
Preference number: 6 (lower is better)
Translates to: EIKRLLFSSTCP*WVSFWSPGLGF
Trigger: AAACCCTAGGCCTGGAGACCAGAACGATACCCAGCAAGGACAAGTGGAGGAAAATAATAACCGCTTTATTTC
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000107678.8
ENSMUST00000107679.8
CDS CAA 72 bp TTTCGGATAAATTCACCCGTTTTCAAGTCCCAGAGTTaGACCGTTCCGTCGTCTGAGCTGGTAATTACGAAG +
Preference number: 6 (lower is better)
Translates to: FRINSPVFKSQS*TVPSSELVITK
Trigger: CTTCGTAATTACCAGCTCAGACGACGGAACGGTCAAACTCTGGGACTTGAAAACGGGTGAATTTATCCGAAA
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000029727.8
ENSMUST00000107675.8
ENSMUST00000107678.8
ENSMUST00000107679.8
CDS GCA 72 bp TATCTTCATCACAGTCTGATGTGGCAGAGGGTCTTTTaGACTTTTGAGATCAACAGGAACCAAGCCATGGTT +
Preference number: 6 (lower is better)
Translates to: YLHHSLMWQRVF*TFEINRNQAMV
Trigger: AACCATGGCTTGGTTCCTGTTGATCTCAAAAGTGCAAAAGACCCTCTGCCACATCAGACTGTGATGAAGATA
44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000107675.8
CDS GCA 72 bp TCCGAGACACTACTGCAGTTTGTGACATTGCTATTGTaGGTATGTTCATCTTCTCTGCTACTGTCATCAGAC +
Preference number: 6 (lower is better)
Translates to: SETLLQFVTLLL*VCSSSLLLSSD
Trigger: GTCTGATGACAGTAGCAGAGAAGATGAACATACGCACAATAGCAATGTCACAAACTGCAGTAGTGTCTCGGA
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000107678.8
ENSMUST00000107679.8
CDS CAA 72 bp AGGTCCGAGACACTACTGCAGTTTGTGACATTGCTATaGTGCGTATGTTCATCTTCTCTGCTACTGTCATCA +
Preference number: 6 (lower is better)
Translates to: RSETLLQFVTLL*CVCSSSLLLSS
Trigger: TGATGACAGTAGCAGAGAAGATGAACATACGCACAATAGCAATGTCACAAACTGCAGTAGTGTCTCGGACCT
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000107678.8
ENSMUST00000107679.8
CDS TCA 72 bp TTGCTCTTCCTGATTTCCCGAAGAGTCCTCATCTACTaGAATAAAGCGGTTATTATTTTCCTCCACTTGTCC +
Preference number: 6 (lower is better)
Translates to: LLFLISRRVLIY*NKAVIIFLHLS
Trigger: GGACAAGTGGAGGAAAATAATAACCGCTTTATTTCAGTAGATGAGGACTCTTCGGGAAATCAGGAAGAGCAA
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000107678.8
ENSMUST00000107679.8
CDS CAA 90 bp TCCCAGATCTTAACTGTAGAATCTGCATTCCCAGAGACAAGAATATaGTCTTTGAGTTCCATTCCACTCGTTAATGACTGGTGTCCTGTT +
Preference number: 6 (lower is better)
Translates to: SQILTVESAFPETRI*SLSSIPLVNDWCPV
Trigger: AACAGGACACCAGTCATTAACGAGTGGAATGGAACTCAAAGACAATATTCTTGTCTCTGGGAATGCAGATTCTACAGTTAAGATCTGGGA
41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000029727.8
ENSMUST00000107675.8
ENSMUST00000107678.8
ENSMUST00000107679.8
CDS GCA 72 bp TTTTCATGGAGATGCATACACCGTACAGTAGAAGTGTaGCCATATAAAGTATGTATACACTCTCCAGTTTCA +
Preference number: 6 (lower is better)
Translates to: FSWRCIHRTVEV*PYKVCIHSPVS
Trigger: TGAAACTGGAGAGTGTATACATACTTTATATGGGCACACTTCTACTGTACGGTGTATGCATCTCCATGAAAA
39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000029727.8
ENSMUST00000107675.8
ENSMUST00000107678.8
ENSMUST00000107679.8
CDS CCA 72 bp TTTCTTTTCATCCGTCTTCGACAAAAAGGCAGACCCTaGGCAATAATGCTAATGCTAAATATCTTCATCACA +
Preference number: 6 (lower is better)
Translates to: FLFIRLRQKGRP*AIMLMLNIFIT
Trigger: TGTGATGAAGATATTTAGCATTAGCATTATTGCCCAGGGTCTGCCTTTTTGTCGAAGACGGATGAAAAGAAA
39% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000107675.8
CDS CCA 72 bp ATCAATTCTGTGCTGTCTGATATACGCACTCTTCCATaGGCTGTGTATGAAACCTGGTTTTATTATTTTTCT +
Preference number: 6 (lower is better)
Translates to: INSVLSDIRTLP*AVYETWFYYFS
Trigger: AGAAAAATAATAAAACCAGGTTTCATACACAGCCCATGGAAGAGTGCGTATATCAGACAGCACAGAATTGAT
38% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 4 transcripts:
ENSMUST00000029727.8
ENSMUST00000107675.8
ENSMUST00000107678.8
ENSMUST00000107679.8