Pregenerated sensors for FBXW4 (Mus musculus)
Ensembl gene IDs: ENSMUSG00000040913Ensembl transcript IDs: ENSMUST00000046869.11, ENSMUST00000159590.2, ENSMUST00000160003.8, ENSMUST00000160018.8, ENSMUST00000160438.3, ENSMUST00000160718.9, ENSMUST00000162433.8, ENSMUST00000162879.8
Found 48 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR GCA 90 bp | GCCCACGTCAGAGTCAGCCCAGCGTCCAGGACTCAGTGCTTCAGGTaGCAGGGCATGGTGGCCAGAGACCTAGGAGCTCACTCAGCAGGG | + |
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Preference number: 1 (lower is better) Translates to: AHVRVSPASRTQCFR*QGMVARDLGAHSAG Trigger: CCCTGCTGAGTGAGCTCCTAGGTCTCTGGCCACCATGCCCTGGCACCTGAAGCACTGAGTCCTGGACGCTGGGCTGACTCTGACGTGGGC 64% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 4 transcripts: ENSMUST00000046869.11 ENSMUST00000160018.8 ENSMUST00000160718.9 ENSMUST00000162433.8 |
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| 3UTR TCA 90 bp | AAGAAGAGTGAGGTATCCCCTCACCTGCCAGGCAGGAGAGGTCCCTaGGTAGCTGACTTGCCCAGCCCCCTAAGCAGGGCTGCTCTGTCA | + |
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Preference number: 1 (lower is better) Translates to: KKSEVSPHLPGRRGP*VADLPSPLSRAALS Trigger: TGACAGAGCAGCCCTGCTTAGGGGGCTGGGCAAGTCAGCTACTCAGGGACCTCTCCTGCCTGGCAGGTGAGGGGATACCTCACTCTTCTT 60% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000160018.8 |
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| 3UTR TCA 90 bp | ACCAGCACAAGTTCTAGCAACTGCATCTCTTTCTGTCCGGGATGGTaGGAGCCCTCATTTCACTCTGTAGGCTGCAGTAGTGCTGGGAAG | + |
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Preference number: 1 (lower is better) Translates to: TSTSSSNCISFCPGW*EPSFHSVGCSSAGK Trigger: CTTCCCAGCACTACTGCAGCCTACAGAGTGAAATGAGGGCTCTCACCATCCCGGACAGAAAGAGATGCAGTTGCTAGAACTTGTGCTGGT 52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000046869.11 ENSMUST00000160018.8 ENSMUST00000160718.9 |
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| 3UTR-3UTR TCA 90 bp | TTCAGGTGCCAGGGCATGGTGGCCAGAGACCTAGGAGCTCACTCAGCAGGGCTGGGCAGGAGAGGTCCCTaGGTAGCTGACTTGCCCAGC | + |
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Preference number: 2 (lower is better) Translates to: FRCQGMVARDLGAHSAGLGRRGP*VADLPS Trigger: GCTGGGCAAGTCAGCTACTCAGGGACCTCTCCTGCC...CAGCCCTGCTGAGTGAGCTCCTAGGTCTCTGGCCACCATGCCCTGGCACCTGAA 63% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 4 transcripts: ENSMUST00000046869.11 ENSMUST00000160018.8 ENSMUST00000160718.9 ENSMUST00000162433.8 |
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| 3UTR-3UTR TCA 90 bp | ACTCAGTGCTTCAGGTGCCAGGGCATGGTGGCCAGAGACCTAGGAGCTCACTCAGGCAGGAGAGGTCCCTaGGTAGCTGACTTGCCCAGC | + |
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Preference number: 2 (lower is better) Translates to: TQCFRCQGMVARDLGAHSGRRGP*VADLPS Trigger: GCTGGGCAAGTCAGCTACTCAGGGACCTCTCCTGCC...TGAGTGAGCTCCTAGGTCTCTGGCCACCATGCCCTGGCACCTGAAGCACTGAGT 61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 4 transcripts: ENSMUST00000046869.11 ENSMUST00000160018.8 ENSMUST00000160718.9 ENSMUST00000162433.8 |
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| 3UTR-3UTR GCA 90 bp | CTAGGAGCTCACTCAGCAGGGCTGGGAAGAAGAGTGAGGTATCCCCTCACCTGCCCCCCTAAGCAGGGCTaGTCTGTCATGGGTTCTGAA | + |
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Preference number: 2 (lower is better) Translates to: LGAHSAGLGRRVRYPLTCPPKQG*SVMGSE Trigger: TTCAGAACCCATGACAGAGCAGCCCTGCTTAGGGGG...GCAGGTGAGGGGATACCTCACTCTTCTTCCCAGCCCTGCTGAGTGAGCTCCTAG 58% GC, longest homopolymer 6 nt, total homopolymer stretches 10 nt. Matches the following 1 transcripts: ENSMUST00000160018.8 |
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| 3UTR-3UTR TCA 90 bp | GTCCTTCCTTCGTTTCAAAGCAAAGCAGACTGGTACCTCAGGCACGAGCCCAGCGCCAGAGTTACCATCTaGCTGAGGAGGTGGCTGGGA | + |
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Preference number: 2 (lower is better) Translates to: VLPSFQSKADWYLRHEPSARVTI*LRRWLG Trigger: TCCCAGCCACCTCCTCAGTCAGATGGTAACTCTGGC...GCTGGGCTCGTGCCTGAGGTACCAGTCTGCTTTGCTTTGAAACGAAGGAAGGAC 57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000046869.11 ENSMUST00000160718.9 |
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| 3UTR-3UTR TCA 90 bp | GCTGACAGGCTTTCTTTGTCCTTCCTTCGTTTCAAAGCAAAGCAGACTGGTACCGGCAGGAGAGGTCCCTaGGTAGCTGACTTGCCCAGC | + |
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Preference number: 2 (lower is better) Translates to: ADRLSLSFLRFKAKQTGTGRRGP*VADLPS Trigger: GCTGGGCAAGTCAGCTACTCAGGGACCTCTCCTGCC...GGTACCAGTCTGCTTTGCTTTGAAACGAAGGAAGGACAAAGAAAGCCTGTCAGC 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000046869.11 ENSMUST00000160718.9 |
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| 3UTR-3UTR TCA 90 bp | CCTTCCTTCGTTTCAAAGCAAAGCAGACTGGTACCTCAGGCACGAGCCCAGCTCTTCTGTCCGGGATGGTaGGAGCCCTCATTTCACTCT | + |
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Preference number: 2 (lower is better) Translates to: PSFVSKQSRLVPQARAQLFCPGW*EPSFHS Trigger: AGAGTGAAATGAGGGCTCTCACCATCCCGGACAGAA...GAGCTGGGCTCGTGCCTGAGGTACCAGTCTGCTTTGCTTTGAAACGAAGGAAGG 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000046869.11 ENSMUST00000160718.9 |
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| 3UTR-3UTR TCA 90 bp | TTGTCCTTCCTTCGTTTCAAAGCAAAGCAGACTGGTACCTCAGGCACGAGCCCATTCTGTCCGGGATGGTaGGAGCCCTCATTTCACTCT | + |
|
Preference number: 2 (lower is better) Translates to: LSFLRFKAKQTGTSGTSPFCPGW*EPSFHS Trigger: AGAGTGAAATGAGGGCTCTCACCATCCCGGACAGAA...TGGGCTCGTGCCTGAGGTACCAGTCTGCTTTGCTTTGAAACGAAGGAAGGACAA 52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000046869.11 ENSMUST00000160718.9 |
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| 3UTR TCA 72 bp | GAGGTATCCCCTCACCTGCCAGGCAGGAGAGGTCCCTaGGTAGCTGACTTGCCCAGCCCCCTAAGCAGGGCT | + |
|
Preference number: 3 (lower is better) Translates to: EVSPHLPGRRGP*VADLPSPLSRA Trigger: AGCCCTGCTTAGGGGGCTGGGCAAGTCAGCTACTCAGGGACCTCTCCTGCCTGGCAGGTGAGGGGATACCTC 64% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 4 transcripts: ENSMUST00000046869.11 ENSMUST00000160018.8 ENSMUST00000160718.9 ENSMUST00000162433.8 |
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| 3UTR GCA 72 bp | GCCCACGTCAGAGTCAGCCCAGCGTCCAGGACTCAGTaGTTCAGGTGCCAGGGCATGGTGGCCAGAGACCTA | + |
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Preference number: 3 (lower is better) Translates to: AHVRVSPASRTQ*FRCQGMVARDL Trigger: TAGGTCTCTGGCCACCATGCCCTGGCACCTGAAGCACTGAGTCCTGGACGCTGGGCTGACTCTGACGTGGGC 64% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 4 transcripts: ENSMUST00000046869.11 ENSMUST00000160018.8 ENSMUST00000160718.9 ENSMUST00000162433.8 |
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| 3UTR TCA 72 bp | GAGCCCAGCTCCAAGATGTTGGCCAGAGTTACCATCTaGCTGAGGAGGTGGCTGGGACCAGCACAAGTTCTA | + |
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Preference number: 3 (lower is better) Translates to: EPSSKMLARVTI*LRRWLGPAQVL Trigger: TAGAACTTGTGCTGGTCCCAGCCACCTCCTCAGTCAGATGGTAACTCTGGCCAACATCTTGGAGCTGGGCTC 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000046869.11 ENSMUST00000160718.9 |
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| 3UTR TCA 72 bp | AGTTCTAGCAACTGCATCTCTTTCTGTCCGGGATGGTaGGAGCCCTCATTTCACTCTGTAGGCTGCAGTAGT | + |
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Preference number: 3 (lower is better) Translates to: SSSNCISFCPGW*EPSFHSVGCSS Trigger: ACTACTGCAGCCTACAGAGTGAAATGAGGGCTCTCACCATCCCGGACAGAAAGAGATGCAGTTGCTAGAACT 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000046869.11 ENSMUST00000160018.8 ENSMUST00000160718.9 |
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| CDS-3UTR CCA 90 bp | CTCAGCAGGGCTGGGAAGAAGAGTGAGGTATCCCCTCACCTGCCAGGCAGGAGATGCAGGCAAGCCCGCTaGCGTCGGTCCCACAGCCGC | + |
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Preference number: 4 (lower is better) Translates to: LSRAGKKSEVSPHLPGRRCRQAR*RRSHSR Trigger: GCGGCTGTGGGACCGACGCCAGCGGGCTTGCCTGCA...TCTCCTGCCTGGCAGGTGAGGGGATACCTCACTCTTCTTCCCAGCCCTGCTGAG 66% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 4 transcripts: ENSMUST00000046869.11 ENSMUST00000160018.8 ENSMUST00000160718.9 ENSMUST00000162433.8 |
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| CDS-3UTR CCA 90 bp | GCCCACGTCAGAGTCAGCCCAGCGTCCAGGACTCAGTGCTTCAGGTGCCAGGGCCCTGTGGCCAGCAGGTaGTTGCCGTCTGTCGTGTAC | + |
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Preference number: 4 (lower is better) Translates to: AHVRVSPASRTQCFRCQGPVASR*LPSVVY Trigger: GTACACGACAGACGGCAACCACCTGCTGGCCACAGG...GCCCTGGCACCTGAAGCACTGAGTCCTGGACGCTGGGCTGACTCTGACGTGGGC 64% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000160018.8 |
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| CDS-3UTR TCA 90 bp | TCAGAGTCAGCCCAGCGTCCAGGACTCAGTGCTTCAGGTGCCAGGGCATGGTGGGCCCAGAGAAGACTCTaGAGGGCCGTCGGTTCAAGC | + |
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Preference number: 4 (lower is better) Translates to: SESAQRPGLSASGARAWWAQRRL*RAVGSS Trigger: GCTTGAACCGACGGCCCTTCAGAGTCTTCTCTGGGC...CCACCATGCCCTGGCACCTGAAGCACTGAGTCCTGGACGCTGGGCTGACTCTGA 62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000046869.11 |
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| CDS-3UTR GCA 90 bp | ACTCAGTGCTTCAGGTGCCAGGGCATGGTGGCCAGAGACCTAGGAGCTCACTCAATGGTGTGTAAGCACTaGCCCAGCCGGCCCGAGGCC | + |
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Preference number: 4 (lower is better) Translates to: TQCFRCQGMVARDLGAHSMVCKH*PSRPEA Trigger: GGCCTCGGGCCGGCTGGGGCAGTGCTTACACACCAT...TGAGTGAGCTCCTAGGTCTCTGGCCACCATGCCCTGGCACCTGAAGCACTGAGT 62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000046869.11 |
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| CDS-3UTR CCA 90 bp | AAGTTCAGGTACATTCTCCTAAGAGCACAGGAGGGCCCACGTCAGAGTCAGCCCTGCAGGCAAGCCCGCTaGCGTCGGTCCCACAGCCGC | + |
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Preference number: 4 (lower is better) Translates to: KFRYILLRAQEGPRQSQPCRQAR*RRSHSR Trigger: GCGGCTGTGGGACCGACGCCAGCGGGCTTGCCTGCA...GGGCTGACTCTGACGTGGGCCCTCCTGTGCTCTTAGGAGAATGTACCTGAACTT 62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000046869.11 ENSMUST00000160018.8 ENSMUST00000160718.9 |
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| CDS-3UTR GCA 90 bp | GGGCCCACGTCAGAGTCAGCCCAGCGTCCAGGACTCAGTGCTTCAGGTGCCAGGAGATGTGTGATCAGCTaGCCACTGTTGAGGTCCCAG | + |
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Preference number: 4 (lower is better) Translates to: GPTSESAQRPGLSASGARRCVIS*PLLRSQ Trigger: CTGGGACCTCAACAGTGGGCAGCTGATCACACATCT...CCTGGCACCTGAAGCACTGAGTCCTGGACGCTGGGCTGACTCTGACGTGGGCCC 61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000046869.11 |
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| CDS-3UTR CCA 90 bp | GCCCACGTCAGAGTCAGCCCAGCGTCCAGGACTCAGTGCTTCAGGTGCCAGGGCACTCGGTCTTCGGTCTaGATGGTGTGTAAGCACTGC | + |
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Preference number: 4 (lower is better) Translates to: AHVRVSPASRTQCFRCQGTRSSV*MVCKHC Trigger: GCAGTGCTTACACACCATCCAGACCGAAGACCGAGT...GCCCTGGCACCTGAAGCACTGAGTCCTGGACGCTGGGCTGACTCTGACGTGGGC 61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000046869.11 |
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| CDS-3UTR CCA 90 bp | TTCCTTCGTTTCAAAGCAAAGCAGACTGGTACCTCAGGCACGAGCCCAGCTCCATGCAGGCAAGCCCGCTaGCGTCGGTCCCACAGCCGC | + |
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Preference number: 4 (lower is better) Translates to: FLRFKAKQTGTSGTSPAPCRQAR*RRSHSR Trigger: GCGGCTGTGGGACCGACGCCAGCGGGCTTGCCTGCA...TGGAGCTGGGCTCGTGCCTGAGGTACCAGTCTGCTTTGCTTTGAAACGAAGGAA 61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000046869.11 ENSMUST00000160718.9 |
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| CDS-3UTR CCA 90 bp | CATCTCTTTCTGTCCGGGATGGTGAGAGCCCTCATTTCACTCTGTAGGCTGCAGTGCAGGCAAGCCCGCTaGCGTCGGTCCCACAGCCGC | + |
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Preference number: 4 (lower is better) Translates to: HLFLSGMVRALISLCRLQCRQAR*RRSHSR Trigger: GCGGCTGTGGGACCGACGCCAGCGGGCTTGCCTGCA...CTGCAGCCTACAGAGTGAAATGAGGGCTCTCACCATCCCGGACAGAAAGAGATG 61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000046869.11 ENSMUST00000160018.8 ENSMUST00000160718.9 |
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| CDS-3UTR TCA 90 bp | GTCCAGGACTCAGTGCTTCAGGTGCCAGGGCATGGTGGCCAGAGACCTAGGAGCGGGAGCCACTCACAATaGTGCCACCTTTACAGTCCA | + |
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Preference number: 4 (lower is better) Translates to: VQDSVLQVPGHGGQRPRSGSHSQ*CHLYSP Trigger: TGGACTGTAAAGGTGGCATCATTGTGAGTGGCTCCC...GCTCCTAGGTCTCTGGCCACCATGCCCTGGCACCTGAAGCACTGAGTCCTGGAC 59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000046869.11 |
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| CDS-3UTR TCA 90 bp | GACCTAGGAGCTCACTCAGCAGGGCTGGGAAGAAGAGTGAGGTATCCCCTCACCTGGGGTCGACGTCAATaGGAAGGCATGCAGGCAAGC | + |
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Preference number: 4 (lower is better) Translates to: DLGAHSAGLGRRVRYPLTWGRRQ*EGMQAS Trigger: GCTTGCCTGCATGCCTTCTCATTGACGTCGACCCCA...GGTGAGGGGATACCTCACTCTTCTTCCCAGCCCTGCTGAGTGAGCTCCTAGGTC 59% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 3 transcripts: ENSMUST00000046869.11 ENSMUST00000160718.9 ENSMUST00000162433.8 |
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| CDS-3UTR CCA 90 bp | AGCAGACTGGTACCTCAGGCACGAGCCCAGCTCCAAGATGTTGGCCAGAGTTACAGTAGGAGGAGCCTGTaGCCAGCAGGTGGTTGCCGT | + |
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Preference number: 4 (lower is better) Translates to: SRLVPQARAQLQDVGQSYSRRSL*PAGGCR Trigger: ACGGCAACCACCTGCTGGCCACAGGCTCCTCCTACT...GTAACTCTGGCCAACATCTTGGAGCTGGGCTCGTGCCTGAGGTACCAGTCTGCT 59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000046869.11 ENSMUST00000160718.9 |
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| CDS-3UTR TCA 90 bp | CCAGCGTCCAGGACTCAGTGCTTCAGGTGCCAGGGCATGGTGGCCAGAGACCTATGCATCCAAGGCATCTaGCTATATCTCCACTTCAGC | + |
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Preference number: 4 (lower is better) Translates to: PASRTQCFRCQGMVARDLCIQGI*LYLHFS Trigger: GCTGAAGTGGAGATATAGTCAGATGCCTTGGATGCA...TAGGTCTCTGGCCACCATGCCCTGGCACCTGAAGCACTGAGTCCTGGACGCTGG 57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000046869.11 |
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| CDS-3UTR CCA 90 bp | ACAGCTAGTCCGGAACCCCAAGCTGACAGGCTTTCTTTGTCCTTCCTTCGTTTCCCAGAGGCCATACCTTaGCTGTCCTGTCCCGGGAGC | + |
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Preference number: 4 (lower is better) Translates to: TASPEPQADRLSLSFLRFPEAIP*LSCPGS Trigger: GCTCCCGGGACAGGACAGCCAAGGTATGGCCTCTGG...GAAACGAAGGAAGGACAAAGAAAGCCTGTCAGCTTGGGGTTCCGGACTAGCTGT 57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000046869.11 |
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| CDS-3UTR TCA 90 bp | CATCTCTTTCTGTCCGGGATGGTGAGAGCCCTCATTTCACTCTGTAGGCTGCAGTCAGCTGCCCACTGTTaGGGTCCCAGATTCTCAGAG | + |
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Preference number: 4 (lower is better) Translates to: HLFLSGMVRALISLCRLQSAAHC*GPRFSE Trigger: CTCTGAGAATCTGGGACCTCAACAGTGGGCAGCTGA...CTGCAGCCTACAGAGTGAAATGAGGGCTCTCACCATCCCGGACAGAAAGAGATG 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000046869.11 |
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| CDS-3UTR CCA 90 bp | GTTCTAGCAACTGCATCTCTTTCTGTCCGGGATGGTGAGAGCCCTCATTTCACTAGTAGGAGGAGCCTGTaGCCAGCAGGTGGTTGCCGT | + |
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Preference number: 4 (lower is better) Translates to: VLATASLSVRDGESPHFTSRRSL*PAGGCR Trigger: ACGGCAACCACCTGCTGGCCACAGGCTCCTCCTACT...AGTGAAATGAGGGCTCTCACCATCCCGGACAGAAAGAGATGCAGTTGCTAGAAC 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000046869.11 ENSMUST00000160018.8 ENSMUST00000160718.9 |
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| CDS-3UTR GCA 90 bp | CAGGCTTTCTTTGTCCTTCCTTCGTTTCAAAGCAAAGCAGACTGGTACCTCAGGCCGTCGGTTCAAGCTTaGACCATCCGGGCGGAACTG | + |
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Preference number: 4 (lower is better) Translates to: QAFFVLPSFQSKADWYLRPSVQA*TIRAEL Trigger: CAGTTCCGCCCGGATGGTGCAAGCTTGAACCGACGG...CCTGAGGTACCAGTCTGCTTTGCTTTGAAACGAAGGAAGGACAAAGAAAGCCTG 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000046869.11 |
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| CDS-3UTR GCA 90 bp | GCTGACAGGCTTTCTTTGTCCTTCCTTCGTTTCAAAGCAAAGCAGACTGGTACCTGGCCAGCAGGTGGTTaGCGTCTGTCTGTAGGCAGT | + |
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Preference number: 4 (lower is better) Translates to: ADRLSLSFLRFKAKQTGTWPAGG*RLSVGS Trigger: ACTGCCTACAGACAGACGGCAACCACCTGCTGGCCA...GGTACCAGTCTGCTTTGCTTTGAAACGAAGGAAGGACAAAGAAAGCCTGTCAGC 52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000046869.11 ENSMUST00000160718.9 |
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| CDS-3UTR CCA 90 bp | CCGGAACCCCAAGCTGACAGGCTTTCTTTGTCCTTCCTTCGTTTCAAAGCAAAGGGTCTTCGGTCTGGATaGTGTGTAAGCACTGCCCCA | + |
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Preference number: 4 (lower is better) Translates to: PEPQADRLSLSFLRFKAKGLRSG*CVSTAP Trigger: TGGGGCAGTGCTTACACACCATCCAGACCGAAGACC...CTTTGCTTTGAAACGAAGGAAGGACAAAGAAAGCCTGTCAGCTTGGGGTTCCGG 52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000046869.11 |
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| CDS-3UTR GCA 90 bp | TTGTCCTTCCTTCGTTTCAAAGCAAAGCAGACTGGTACCTCAGGCACGAGCCCACTCAGAGGTGAGAAGTaGCCACAACAAGCTGTTCCA | + |
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Preference number: 4 (lower is better) Translates to: LSFLRFKAKQTGTSGTSPLRGEK*PQQAVP Trigger: TGGAACAGCTTGTTGTGGGCACTTCTCACCTCTGAG...TGGGCTCGTGCCTGAGGTACCAGTCTGCTTTGCTTTGAAACGAAGGAAGGACAA 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000046869.11 |
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| 3UTR CAA 72 bp | ACAGCTAGTCCGGAACCCCAAGCTGACAGGCTTTCTTaGTCCTTCCTTCGTTTCAAAGCAAAGCAGACTGGT | + |
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Preference number: 4 (lower is better) Translates to: TASPEPQADRLS*SFLRFKAKQTG Trigger: ACCAGTCTGCTTTGCTTTGAAACGAAGGAAGGACAAAGAAAGCCTGTCAGCTTGGGGTTCCGGACTAGCTGT 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000046869.11 ENSMUST00000160718.9 |
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| CDS-3UTR CAA 90 bp | CAGGTGCCAGGGCATGGTGGCCAGAGACCTAGGAGCTCACTCAGCAGGGCTGGGGCCGTCGGTTCAAGCTaGCACCATCCGGGCGGAACT | + |
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Preference number: 5 (lower is better) Translates to: QVPGHGGQRPRSSLSRAGAVGSS*HHPGGT Trigger: AGTTCCGCCCGGATGGTGCAAGCTTGAACCGACGGC...CCCAGCCCTGCTGAGTGAGCTCCTAGGTCTCTGGCCACCATGCCCTGGCACCTG 66% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000046869.11 |
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| CDS GCA 90 bp | GCCGCACGAGACCGTAGTAGGAGGAGCCTGTGGCCAGCAGGTGGTTaGCGTCTGTCTGTAGGCAGTAGAAGGTACTGTCATGAGGCTCCT | + |
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Preference number: 5 (lower is better) Translates to: AARDRSRRSLWPAGG*RLSVGSRRYCHEAP Trigger: AGGAGCCTCATGACAGTACCTTCTACTGCCTACAGACAGACGGCAACCACCTGCTGGCCACAGGCTCCTCCTACTACGGTCTCGTGCGGC 60% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt. Matches the following 6 transcripts: ENSMUST00000046869.11 ENSMUST00000160003.8 ENSMUST00000160438.3 ENSMUST00000160718.9 ENSMUST00000162433.8 ENSMUST00000162879.8 |
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| CDS-3UTR CAA 90 bp | TTCCTTCGTTTCAAAGCAAAGCAGACTGGTACCTCAGGCACGAGCCCAGCTCCAGCCAGAGGCCATACCTaGGCTGTCCTGTCCCGGGAG | + |
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Preference number: 5 (lower is better) Translates to: FLRFKAKQTGTSGTSPAPARGHT*AVLSRE Trigger: CTCCCGGGACAGGACAGCCAAGGTATGGCCTCTGGC...TGGAGCTGGGCTCGTGCCTGAGGTACCAGTCTGCTTTGCTTTGAAACGAAGGAA 59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000046869.11 |
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| CDS-3UTR CAA 90 bp | GCGTCCAGGACTCAGTGCTTCAGGTGCCAGGGCATGGTGGCCAGAGACCTAGGACACATTTCCGTGTACTaGTGCGGAGGTCCCAATAGC | + |
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Preference number: 5 (lower is better) Translates to: ASRTQCFRCQGMVARDLGHISVY*CGGPNS Trigger: GCTATTGGGACCTCCGCACAAGTACACGGAAATGTG...TCCTAGGTCTCTGGCCACCATGCCCTGGCACCTGAAGCACTGAGTCCTGGACGC 59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000046869.11 ENSMUST00000160718.9 ENSMUST00000162433.8 |
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| CDS-3UTR CAA 90 bp | CACTCAGCAGGGCTGGGAAGAAGAGTGAGGTATCCCCTCACCTGCCAGGCAGGAATCAGCTGCCCACTGTaGAGGTCCCAGATTCTCAGA | + |
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Preference number: 5 (lower is better) Translates to: HSAGLGRRVRYPLTCQAGISCPL*RSQILR Trigger: TCTGAGAATCTGGGACCTCAACAGTGGGCAGCTGAT...TCCTGCCTGGCAGGTGAGGGGATACCTCACTCTTCTTCCCAGCCCTGCTGAGTG 58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000046869.11 |
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| CDS-3UTR CAA 90 bp | CAGGACTCAGTGCTTCAGGTGCCAGGGCATGGTGGCCAGAGACCTAGGAGCTCACACATTTCCGTGTACTaGTGCGGAGGTCCCAATAGC | + |
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Preference number: 5 (lower is better) Translates to: QDSVLQVPGHGGQRPRSSHISVY*CGGPNS Trigger: GCTATTGGGACCTCCGCACAAGTACACGGAAATGTG...TGAGCTCCTAGGTCTCTGGCCACCATGCCCTGGCACCTGAAGCACTGAGTCCTG 58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000046869.11 ENSMUST00000160718.9 ENSMUST00000162433.8 |
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| CDS-3UTR CAA 90 bp | AAGTTCAGGTACATTCTCCTAAGAGCACAGGAGGGCCCACGTCAGAGTCAGCCCGTGGCCAGCAGGTGGTaGCCGTCTGTCGTGTACTTG | + |
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Preference number: 5 (lower is better) Translates to: KFRYILLRAQEGPRQSQPVASRW*PSVVYL Trigger: CAAGTACACGACAGACGGCAACCACCTGCTGGCCAC...GGGCTGACTCTGACGTGGGCCCTCCTGTGCTCTTAGGAGAATGTACCTGAACTT 58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000160018.8 |
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| CDS CCA 72 bp | GGGCTGATAGCAATGGACCAGACTCGGTCTTCGGTCTaGATGGTGTGTAAGCACTGCCCCAGCCGGCCCGAG | + |
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Preference number: 6 (lower is better) Translates to: GLIAMDQTRSSV*MVCKHCPSRPE Trigger: CTCGGGCCGGCTGGGGCAGTGCTTACACACCATCCAGACCGAAGACCGAGTCTGGTCCATTGCTATCAGCCC 62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000046869.11 |
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| CDS CCA 72 bp | CCCACAGCCGCACGAGACCGTAGTAGGAGGAGCCTGTaGCCAGCAGGTGGTTGCCGTCTGTCGTGTACTTGT | + |
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Preference number: 6 (lower is better) Translates to: PTAARDRSRRSL*PAGGCRLSCTC Trigger: ACAAGTACACGACAGACGGCAACCACCTGCTGGCCACAGGCTCCTCCTACTACGGTCTCGTGCGGCTGTGGG 62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000160018.8 |
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| CDS CCA 72 bp | CCGCCAGTTCTGAGACAGTTTCACGCGCTCCTTTACTaGAATGCCTGCCATGAGGTCGGTGCCGAGCCGCGT | + |
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Preference number: 6 (lower is better) Translates to: PPVLRQFHALLY*NACHEVGAEPR Trigger: ACGCGGCTCGGCACCGACCTCATGGCAGGCATTCCAGTAAAGGAGCGCGTGAAACTGTCTCAGAACTGGCGG 61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000046869.11 |
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| CDS GCA 72 bp | GACCGTAGTAGGAGGAGCCTGTGGCCAGCAGGTGGTTaGCGTCTGTCGTGTACTTGTGCGGAGGTCCCAATA | + |
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Preference number: 6 (lower is better) Translates to: DRSRRSLWPAGG*RLSCTCAEVPI Trigger: TATTGGGACCTCCGCACAAGTACACGACAGACGGCAACCACCTGCTGGCCACAGGCTCCTCCTACTACGGTC 60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000160018.8 |
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| CDS TCA 72 bp | AGAATCCGATCTCGGCAGCGCCCCAGCCGCCAGTTCTaGGACAGTTTCACGCGCTCCTTTACTGGAATGCCT | + |
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Preference number: 6 (lower is better) Translates to: RIRSRQRPSRQF*DSFTRSFTGMP Trigger: AGGCATTCCAGTAAAGGAGCGCGTGAAACTGTCTCAGAACTGGCGGCTGGGGCGCTGCCGAGATCGGATTCT 58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000046869.11 ENSMUST00000159590.2 |
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| CDS GCA 72 bp | GACCGTAGTAGGAGGAGCCTGTGGCCAGCAGGTGGTTaGCGTCTGTCTGTAGGCAGTAGAAGGTACTGTCAT | + |
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Preference number: 6 (lower is better) Translates to: DRSRRSLWPAGG*RLSVGSRRYCH Trigger: ATGACAGTACCTTCTACTGCCTACAGACAGACGGCAACCACCTGCTGGCCACAGGCTCCTCCTACTACGGTC 57% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt. Matches the following 6 transcripts: ENSMUST00000046869.11 ENSMUST00000160003.8 ENSMUST00000160438.3 ENSMUST00000160718.9 ENSMUST00000162433.8 ENSMUST00000162879.8 |
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