Pregenerated sensors for FBXW28 (Mus musculus)
Ensembl gene IDs: ENSMUSG00000054087Ensembl transcript IDs: ENSMUST00000112039.7, ENSMUST00000112040.9, ENSMUST00000196351.2, ENSMUST00000200156.5
Found 46 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR-3UTR GCA 90 bp | TATAGCAATGAAATGACAGACGTCACAGCAAAATGTGCATGTGTGTGTGTGTGTGTGTGTGTACACAAGTaGGTGTGTACATTTAGCCAT | + |
|
Preference number: 2 (lower is better) Translates to: YSNEMTDVTAKCACVCVCVCVHK*VCTFSH Trigger: ATGGCTAAATGTACACACGCACTTGTGTACACACAC...ACACACACACACACATGCACATTTTGCTGTGACGTCTGTCATTTCATTGCTATA 41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000112040.9 |
||
| CDS-3UTR TCA 90 bp | CACAAGTGCGTGTGTACATTTAGCCATAGTTTTTCTTTCAAAGAGAGGTTCTCTTCACGTCCTTATCACTaGCTCCAAAATAGTCTGGTC | + |
|
Preference number: 4 (lower is better) Translates to: HKCVCTFSHSFSFKERFSSRPYH*LQNSLV Trigger: GACCAGACTATTTTGGAGTCAGTGATAAGGACGTGA...AGAGAACCTCTCTTTGAAAGAAAAACTATGGCTAAATGTACACACGCACTTGTG 41% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000112040.9 |
||
| CDS-3UTR CCA 90 bp | GCGTGTGTACATTTAGCCATAGTTTTTCTTTCAAAGAGAGGTTCTCTTAATGTAGACTCCAAAATAGTCTaGTCTCCCCTCATCTTCTGC | + |
|
Preference number: 4 (lower is better) Translates to: ACVHLAIVFLSKRGSLNVDSKIV*SPLIFC Trigger: GCAGAAGATGAGGGGAGACCAGACTATTTTGGAGTC...TACATTAAGAGAACCTCTCTTTGAAAGAAAAACTATGGCTAAATGTACACACGC 40% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 1 transcripts: ENSMUST00000112040.9 |
||
| CDS TCA 90 bp | GAAATTCTGCAAGGAAACCCCAACAATATGTGGACACAAGACAGTTaGGGGACAACTCTAACTGAAGGAGGTACATTTCCCTTCCCTCTG | + |
|
Preference number: 5 (lower is better) Translates to: EILQGNPNNMWTQDS*GTTLTEGGTFPFPL Trigger: CAGAGGGAAGGGAAATGTACCTCCTTCAGTTAGAGTTGTCCCTCAACTGTCTTGTGTCCACATATTGTTGGGGTTTCCTTGCAGAATTTC 46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000196351.2 |
||
| CDS GCA 90 bp | AGCAAACTCCACAGGAAATTCCTTGTAAGTGAAATCTTCTGGCTTTaGCCGGGTCTTGGCGTGTTCTTGCCATGTTTTGTCAAAGAAGAA | + |
|
Preference number: 5 (lower is better) Translates to: SKLHRKFLVSEIFWL*PGLGVFLPCFVKEE Trigger: TTCTTCTTTGACAAAACATGGCAAGAACACGCCAAGACCCGGGCAAAGCCAGAAGATTTCACTTACAAGGAATTTCCTGTGGAGTTTGCT 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000196351.2 |
||
| CDS CCA 90 bp | CCGAAATTCAAACTCCACAGGAAATTCCTTGTAAGTGAAATCTTCTaGCTTTGCCCGGGTCTTGGCGTGTTCTTGCCATGTTTTGTCAAA | + |
|
Preference number: 5 (lower is better) Translates to: PKFKLHRKFLVSEIF*LCPGLGVFLPCFVK Trigger: TTTGACAAAACATGGCAAGAACACGCCAAGACCCGGGCAAAGCCAGAAGATTTCACTTACAAGGAATTTCCTGTGGAGTTTGAATTTCGG 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000112039.7 ENSMUST00000112040.9 ENSMUST00000200156.5 |
||
| CDS CCA 90 bp | GATAACAGCAAACTCCACAGGAAATTCCTTGTAAGTGAAATCTTCTaGCTTTGCCCGGGTCTTGGCGTGTTCTTGCCATGTTTTGTCAAA | + |
|
Preference number: 5 (lower is better) Translates to: DNSKLHRKFLVSEIF*LCPGLGVFLPCFVK Trigger: TTTGACAAAACATGGCAAGAACACGCCAAGACCCGGGCAAAGCCAGAAGATTTCACTTACAAGGAATTTCCTGTGGAGTTTGCTGTTATC 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000196351.2 |
||
| CDS-3UTR CAA 90 bp | TATAGCAATGAAATGACAGACGTCACAGCAAAATGTGCATGTGTGTGTGTGTGTCGGATTACTGGAACTTaGAGAACGGTAGACACAGGG | + |
|
Preference number: 5 (lower is better) Translates to: YSNEMTDVTAKCACVCVCRITGT*RTVDTG Trigger: CCCTGTGTCTACCGTTCTCAAAGTTCCAGTAATCCG...ACACACACACACACATGCACATTTTGCTGTGACGTCTGTCATTTCATTGCTATA 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000112040.9 |
||
| CDS GCA 90 bp | TTCAAACTCCACAGGAAATTCCTTGTAAGTGAAATCTTCTGGCTTTaGCCGGGTCTTGGCGTGTTCTTGCCATGTTTTGTCAAAGAAGAA | + |
|
Preference number: 5 (lower is better) Translates to: FKLHRKFLVSEIFWL*PGLGVFLPCFVKEE Trigger: TTCTTCTTTGACAAAACATGGCAAGAACACGCCAAGACCCGGGCAAAGCCAGAAGATTTCACTTACAAGGAATTTCCTGTGGAGTTTGAA 43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000112039.7 ENSMUST00000112040.9 ENSMUST00000200156.5 |
||
| CDS GCA 90 bp | GTCATACAGACAGCAGACTTTTCTTGTCCATTTCTTGTTAAGCCATaGCTTGAGATATACCATGGATGTGCCCGAAATTCAAACTCCACA | + |
|
Preference number: 5 (lower is better) Translates to: VIQTADFSCPFLVKP*LEIYHGCARNSNST Trigger: TGTGGAGTTTGAATTTCGGGCACATCCATGGTATATCTCAAGGCATGGCTTAACAAGAAATGGACAAGAAAAGTCTGCTGTCTGTATGAC 42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000112039.7 ENSMUST00000112040.9 ENSMUST00000200156.5 |
||
| CDS GCA 90 bp | GTCATACAGACAGCAGACTTTTCTTGTCCATTTCTTGTTAAGCCATaGCTTGAGATATACCATGGATGTGCCCGAAATTCTGCAAGGAAA | + |
|
Preference number: 5 (lower is better) Translates to: VIQTADFSCPFLVKP*LEIYHGCARNSARK Trigger: TTTCCTTGCAGAATTTCGGGCACATCCATGGTATATCTCAAGGCATGGCTTAACAAGAAATGGACAAGAAAAGTCTGCTGTCTGTATGAC 42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000196351.2 |
||
| CDS TCA 90 bp | CAGACGGAGACCATTTATGTCAAAGAGCAAGAGAGAGAATCTAGTTaGACAAACAATCACGTCCTTATCACTGACTCCAAAATAGTCTGG | + |
|
Preference number: 5 (lower is better) Translates to: QTETIYVKEQERESS*TNNHVLITDSKIVW Trigger: CCAGACTATTTTGGAGTCAGTGATAAGGACGTGATTGTTTGTTCAACTAGATTCTCTCTCTTGCTCTTTGACATAAATGGTCTCCGTCTG 41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000112039.7 ENSMUST00000112040.9 ENSMUST00000200156.5 |
||
| CDS-3UTR CAA 90 bp | CACAAGTGCGTGTGTACATTTAGCCATAGTTTTTCTTTCAAAGAGAGGTTCTCTTGTTCACCACCAAATTaGGCCTCTTCACTGCTTAGA | + |
|
Preference number: 5 (lower is better) Translates to: HKCVCTFSHSFSFKERFSCSPPN*ASSLLR Trigger: TCTAAGCAGTGAAGAGGCCAAATTTGGTGGTGAACA...AGAGAACCTCTCTTTGAAAGAAAAACTATGGCTAAATGTACACACGCACTTGTG 41% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000112040.9 |
||
| CDS-3UTR CAA 90 bp | TATAGCAATGAAATGACAGACGTCACAGCAAAATGTGCATGTGTGTGTGTGTGTTTTCTTGTCCATTTCTaGTTAAGCCATGCCTTGAGA | + |
|
Preference number: 5 (lower is better) Translates to: YSNEMTDVTAKCACVCVCFLVHF*LSHALR Trigger: TCTCAAGGCATGGCTTAACAAGAAATGGACAAGAAA...ACACACACACACACATGCACATTTTGCTGTGACGTCTGTCATTTCATTGCTATA 40% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000112040.9 |
||
| CDS-3UTR CAA 90 bp | CACAAGTGCGTGTGTACATTTAGCCATAGTTTTTCTTTCAAAGAGAGGTTCTCTTGGCAGTCCCACAGTTaGATAGTTGATTGCATATCT | + |
|
Preference number: 5 (lower is better) Translates to: HKCVCTFSHSFSFKERFSWQSHS*IVDCIS Trigger: AGATATGCAATCAACTATCAAACTGTGGGACTGCCA...AGAGAACCTCTCTTTGAAAGAAAAACTATGGCTAAATGTACACACGCACTTGTG 40% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000112040.9 |
||
| CDS-3UTR CAA 90 bp | TATAGCAATGAAATGACAGACGTCACAGCAAAATGTGCATGTGTGTGTGTGTGTTCATGTAAAACACCTTaGTCAAGTCATTTAGGCGGT | + |
|
Preference number: 5 (lower is better) Translates to: YSNEMTDVTAKCACVCVCSCKTP*SSHLGG Trigger: ACCGCCTAAATGACTTGACAAAGGTGTTTTACATGA...ACACACACACACACATGCACATTTTGCTGTGACGTCTGTCATTTCATTGCTATA 40% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000112040.9 |
||
| CDS-3UTR CAA 90 bp | GCGTGTGTACATTTAGCCATAGTTTTTCTTTCAAAGAGAGGTTCTCTTAATGTAGGTCTTGGCGTGTTCTaGCCATGTTTTGTCAAAGAA | + |
|
Preference number: 5 (lower is better) Translates to: ACVHLAIVFLSKRGSLNVGLGVF*PCFVKE Trigger: TTCTTTGACAAAACATGGCAAGAACACGCCAAGACC...TACATTAAGAGAACCTCTCTTTGAAAGAAAAACTATGGCTAAATGTACACACGC 39% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000112040.9 |
||
| CDS CAA 72 bp | GGCTTTGCCCGGGTCTTGGCGTGTTCTTGCCATGTTTaGTCAAAGAAGAACTGCTTCCATGTCTCTAAGCCA | + |
|
Preference number: 6 (lower is better) Translates to: GFARVLACSCHV*SKKNCFHVSKP Trigger: TGGCTTAGAGACATGGAAGCAGTTCTTCTTTGACAAAACATGGCAAGAACACGCCAAGACCCGGGCAAAGCC 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 4 transcripts: ENSMUST00000112039.7 ENSMUST00000112040.9 ENSMUST00000196351.2 ENSMUST00000200156.5 |
||
| CDS CAA 90 bp | AAATCTTCTGGCTTTGCCCGGGTCTTGGCGTGTTCTTGCCATGTTTaGTCAAAGAAGAACTGCTTCCATGTCTCTAAGCCATGGAGCGGT | + |
|
Preference number: 6 (lower is better) Translates to: KSSGFARVLACSCHV*SKKNCFHVSKPWSG Trigger: ACCGCTCCATGGCTTAGAGACATGGAAGCAGTTCTTCTTTGACAAAACATGGCAAGAACACGCCAAGACCCGGGCAAAGCCAGAAGATTT 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 4 transcripts: ENSMUST00000112039.7 ENSMUST00000112040.9 ENSMUST00000196351.2 ENSMUST00000200156.5 |
||
| CDS TCA 72 bp | GGCTGTTTTGGACTTTCCCAGGTCATAGCACCCTCATaGATATCCCAGGTAGAAATCCTGTTCATGGAAGTC | + |
|
Preference number: 6 (lower is better) Translates to: GCFGLSQVIAPS*ISQVEILFMEV Trigger: GACTTCCATGAACAGGATTTCTACCTGGGATATTCATGAGGGTGCTATGACCTGGGAAAGTCCAAAACAGCC 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 4 transcripts: ENSMUST00000112039.7 ENSMUST00000112040.9 ENSMUST00000196351.2 ENSMUST00000200156.5 |
||
| CDS TCA 72 bp | ATATCCAAAGAGCCAGCATCACAGGTGACAATGACATaGACAGGGTCCACCCATAGTCTCCAGATCTCTTCT | + |
|
Preference number: 6 (lower is better) Translates to: ISKEPASQVTMT*TGSTHSLQISS Trigger: AGAAGAGATCTGGAGACTATGGGTGGACCCTGTTCATGTCATTGTCACCTGTGATGCTGGCTCTTTGGATAT 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000112039.7 ENSMUST00000112040.9 ENSMUST00000200156.5 |
||
| CDS GCA 72 bp | AAATCTTCTGGCTTTGCCCGGGTCTTGGCGTGTTCTTaGCATGTTTTGTCAAAGAAGAACTGCTTCCATGTC | + |
|
Preference number: 6 (lower is better) Translates to: KSSGFARVLACS*HVLSKKNCFHV Trigger: GACATGGAAGCAGTTCTTCTTTGACAAAACATGGCAAGAACACGCCAAGACCCGGGCAAAGCCAGAAGATTT 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 4 transcripts: ENSMUST00000112039.7 ENSMUST00000112040.9 ENSMUST00000196351.2 ENSMUST00000200156.5 |
||
| CDS GCA 72 bp | CACAGGAAATTCCTTGTAAGTGAAATCTTCTGGCTTTaGCCGGGTCTTGGCGTGTTCTTGCCATGTTTTGTC | + |
|
Preference number: 6 (lower is better) Translates to: HRKFLVSEIFWL*PGLGVFLPCFV Trigger: GACAAAACATGGCAAGAACACGCCAAGACCCGGGCAAAGCCAGAAGATTTCACTTACAAGGAATTTCCTGTG 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 4 transcripts: ENSMUST00000112039.7 ENSMUST00000112040.9 ENSMUST00000196351.2 ENSMUST00000200156.5 |
||
| CDS CCA 72 bp | AAACTCCACAGGAAATTCCTTGTAAGTGAAATCTTCTaGCTTTGCCCGGGTCTTGGCGTGTTCTTGCCATGT | + |
|
Preference number: 6 (lower is better) Translates to: KLHRKFLVSEIF*LCPGLGVFLPC Trigger: ACATGGCAAGAACACGCCAAGACCCGGGCAAAGCCAGAAGATTTCACTTACAAGGAATTTCCTGTGGAGTTT 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 4 transcripts: ENSMUST00000112039.7 ENSMUST00000112040.9 ENSMUST00000196351.2 ENSMUST00000200156.5 |
||
| CDS CAA 72 bp | GAAATCTTCTGGCTTTGCCCGGGTCTTGGCGTGTTCTaGCCATGTTTTGTCAAAGAAGAACTGCTTCCATGT | + |
|
Preference number: 6 (lower is better) Translates to: EIFWLCPGLGVF*PCFVKEELLPC Trigger: ACATGGAAGCAGTTCTTCTTTGACAAAACATGGCAAGAACACGCCAAGACCCGGGCAAAGCCAGAAGATTTC 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 4 transcripts: ENSMUST00000112039.7 ENSMUST00000112040.9 ENSMUST00000196351.2 ENSMUST00000200156.5 |
||
| CDS TCA 72 bp | TCTTCTGCCAGCGAGAAGCTGGCTGTCAAATATCCTTaGATAGTTACTTTGTTCCCGATCCCTTCCAACTTC | + |
|
Preference number: 6 (lower is better) Translates to: SSASEKLAVKYP*IVTLFPIPSNF Trigger: GAAGTTGGAAGGGATCGGGAACAAAGTAACTATTCAAGGATATTTGACAGCCAGCTTCTCGCTGGCAGAAGA 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000112039.7 ENSMUST00000112040.9 ENSMUST00000200156.5 |
||
| CDS TCA 72 bp | CAAGGAAACCCCAACAATATGTGGACACAAGACAGTTaGGGGACAACTCTAACTGAAGGAGGTACATTTCCC | + |
|
Preference number: 6 (lower is better) Translates to: QGNPNNMWTQDS*GTTLTEGGTFP Trigger: GGGAAATGTACCTCCTTCAGTTAGAGTTGTCCCTCAACTGTCTTGTGTCCACATATTGTTGGGGTTTCCTTG 46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000196351.2 |
||
| CDS CAA 72 bp | CTGATGGCCTCAGTAAGCTGCTCATGTAAAACACCTTaGTCAAGTCATTTAGGCGGTGCCCTATCAGAAAGA | + |
|
Preference number: 6 (lower is better) Translates to: LMASVSCSCKTP*SSHLGGALSER Trigger: TCTTTCTGATAGGGCACCGCCTAAATGACTTGACAAAGGTGTTTTACATGAGCAGCTTACTGAGGCCATCAG 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000112039.7 ENSMUST00000112040.9 |
||
| CDS CAA 90 bp | CCCGTTTTCGACGCCAGAACTTCCTTGTTGTGGCAGTCCCACAGTTaGATAGTTGATTGCATATCTATAGTGACTGCAATTTGCATCTCA | + |
|
Preference number: 6 (lower is better) Translates to: PVFDARTSLLWQSHS*IVDCISIVTAICIS Trigger: TGAGATGCAAATTGCAGTCACTATAGATATGCAATCAACTATCAAACTGTGGGACTGCCACAACAAGGAAGTTCTGGCGTCGAAAACGGG 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000112039.7 ENSMUST00000112040.9 ENSMUST00000200156.5 |
||
| CDS CAA 90 bp | TACAGACAGCAGACTTTTCTTGTCCATTTCTTGTTAAGCCATGCCTaGAGATATACCATGGATGTGCCCGAAATTCTGCAAGGAAACCCC | + |
|
Preference number: 6 (lower is better) Translates to: YRQQTFLVHFLLSHA*RYTMDVPEILQGNP Trigger: GGGGTTTCCTTGCAGAATTTCGGGCACATCCATGGTATATCTCAAGGCATGGCTTAACAAGAAATGGACAAGAAAAGTCTGCTGTCTGTA 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000196351.2 |
||
| CDS CAA 72 bp | ATCTTCTGCCAGCGAGAAGCTGGCTGTCAAATATCCTaGAATAGTTACTTTGTTCCCGATCCCTTCCAACTT | + |
|
Preference number: 6 (lower is better) Translates to: IFCQREAGCQIS*NSYFVPDPFQL Trigger: AAGTTGGAAGGGATCGGGAACAAAGTAACTATTCAAGGATATTTGACAGCCAGCTTCTCGCTGGCAGAAGAT 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000112039.7 ENSMUST00000112040.9 ENSMUST00000200156.5 |
||
| CDS GCA 72 bp | ACCAAGACAATCGGGCCATCCTTAGTAAATTCAGATTaGAGTAATTTACAGCCAAAGAACAGGCCCGTTTTC | + |
|
Preference number: 6 (lower is better) Translates to: TKTIGPSLVNSD*SNLQPKNRPVF Trigger: GAAAACGGGCCTGTTCTTTGGCTGTAAATTACTGCAATCTGAATTTACTAAGGATGGCCCGATTGTCTTGGT 43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000112039.7 ENSMUST00000112040.9 ENSMUST00000200156.5 |
||
| CDS CAA 72 bp | GACGCCAGAACTTCCTTGTTGTGGCAGTCCCACAGTTaGATAGTTGATTGCATATCTATAGTGACTGCAATT | + |
|
Preference number: 6 (lower is better) Translates to: DARTSLLWQSHS*IVDCISIVTAI Trigger: AATTGCAGTCACTATAGATATGCAATCAACTATCAAACTGTGGGACTGCCACAACAAGGAAGTTCTGGCGTC 43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000112039.7 ENSMUST00000112040.9 ENSMUST00000200156.5 |
||
| CDS CAA 72 bp | AAATTAAGGACATCAGGGTTATCCTGTCTTCCCTTCTaGGGGTCCAGAAGACTTTTCGGATTACTGGAACTT | + |
|
Preference number: 6 (lower is better) Translates to: KLRTSGLSCLPF*GSRRLFGLLEL Trigger: AAGTTCCAGTAATCCGAAAAGTCTTCTGGACCCCAAGAAGGGAAGACAGGATAACCCTGATGTCCTTAATTT 43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 3 transcripts: ENSMUST00000112039.7 ENSMUST00000112040.9 ENSMUST00000200156.5 |
||
| CDS CAA 72 bp | CAGACACTCAAGGTATATGCCATCAGACAGCAGGGCTaGGGACTATTATTTGCCACTGAAATTATGCTCATA | + |
|
Preference number: 6 (lower is better) Translates to: QTLKVYAIRQQG*GLLFATEIMLI Trigger: TATGAGCATAATTTCAGTGGCAAATAATAGTCCCAAGCCCTGCTGTCTGATGGCATATACCTTGAGTGTCTG 43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000112039.7 ENSMUST00000200156.5 |
||
| CDS CAA 90 bp | TACAGACAGCAGACTTTTCTTGTCCATTTCTTGTTAAGCCATGCCTaGAGATATACCATGGATGTGCCCGAAATTCAAACTCCACAGGAA | + |
|
Preference number: 6 (lower is better) Translates to: YRQQTFLVHFLLSHA*RYTMDVPEIQTPQE Trigger: TTCCTGTGGAGTTTGAATTTCGGGCACATCCATGGTATATCTCAAGGCATGGCTTAACAAGAAATGGACAAGAAAAGTCTGCTGTCTGTA 42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000112039.7 ENSMUST00000112040.9 ENSMUST00000200156.5 |
||
| CDS GCA 72 bp | ACAGCAGACTTTTCTTGTCCATTTCTTGTTAAGCCATaGCTTGAGATATACCATGGATGTGCCCGAAATTCA | + |
|
Preference number: 6 (lower is better) Translates to: TADFSCPFLVKP*LEIYHGCARNS Trigger: TGAATTTCGGGCACATCCATGGTATATCTCAAGGCATGGCTTAACAAGAAATGGACAAGAAAAGTCTGCTGT 42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000112039.7 ENSMUST00000112040.9 ENSMUST00000200156.5 |
||
| CDS GCA 72 bp | ACAGCAGACTTTTCTTGTCCATTTCTTGTTAAGCCATaGCTTGAGATATACCATGGATGTGCCCGAAATTCT | + |
|
Preference number: 6 (lower is better) Translates to: TADFSCPFLVKP*LEIYHGCARNS Trigger: AGAATTTCGGGCACATCCATGGTATATCTCAAGGCATGGCTTAACAAGAAATGGACAAGAAAAGTCTGCTGT 42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000196351.2 |
||
| CDS CCA 72 bp | AGACACTCAAGGTATATGCCATCAGACAGCAGGGCTTaGGACTATTATTTGCCACTGAAATTATGCTCATAT | + |
|
Preference number: 6 (lower is better) Translates to: RHSRYMPSDSRA*DYYLPLKLCSY Trigger: ATATGAGCATAATTTCAGTGGCAAATAATAGTCCCAAGCCCTGCTGTCTGATGGCATATACCTTGAGTGTCT 42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000112039.7 ENSMUST00000200156.5 |
||
| CDS CAA 72 bp | CAGACTTTTCTTGTCCATTTCTTGTTAAGCCATGCCTaGAGATATACCATGGATGTGCCCGAAATTCTGCAA | + |
|
Preference number: 6 (lower is better) Translates to: QTFLVHFLLSHA*RYTMDVPEILQ Trigger: TTGCAGAATTTCGGGCACATCCATGGTATATCTCAAGGCATGGCTTAACAAGAAATGGACAAGAAAAGTCTG 42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000196351.2 |
||
| CDS CAA 90 bp | TGTTCATGGAAGTCATACAGACAGCAGACTTTTCTTGTCCATTTCTaGTTAAGCCATGCCTTGAGATATACCATGGATGTGCCCGAAATT | + |
|
Preference number: 6 (lower is better) Translates to: CSWKSYRQQTFLVHF*LSHALRYTMDVPEI Trigger: AATTTCGGGCACATCCATGGTATATCTCAAGGCATGGCTTAACAAGAAATGGACAAGAAAAGTCTGCTGTCTGTATGACTTCCATGAACA 41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 4 transcripts: ENSMUST00000112039.7 ENSMUST00000112040.9 ENSMUST00000196351.2 ENSMUST00000200156.5 |
||
| CDS TCA 72 bp | AACTTCCTTGTTGTGGCAGTCCCACAGTTTGATAGTTaGTTGCATATCTATAGTGACTGCAATTTGCATCTC | + |
|
Preference number: 6 (lower is better) Translates to: NFLVVAVPQFDS*LHIYSDCNLHL Trigger: GAGATGCAAATTGCAGTCACTATAGATATGCAATCAACTATCAAACTGTGGGACTGCCACAACAAGGAAGTT 40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000112039.7 ENSMUST00000112040.9 ENSMUST00000200156.5 |
||
| CDS CAA 72 bp | CAGACTTTTCTTGTCCATTTCTTGTTAAGCCATGCCTaGAGATATACCATGGATGTGCCCGAAATTCAAACT | + |
|
Preference number: 6 (lower is better) Translates to: QTFLVHFLLSHA*RYTMDVPEIQT Trigger: AGTTTGAATTTCGGGCACATCCATGGTATATCTCAAGGCATGGCTTAACAAGAAATGGACAAGAAAAGTCTG 40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000112039.7 ENSMUST00000112040.9 ENSMUST00000200156.5 |
||
| CDS CAA 72 bp | AAGTCATACAGACAGCAGACTTTTCTTGTCCATTTCTaGTTAAGCCATGCCTTGAGATATACCATGGATGTG | + |
|
Preference number: 6 (lower is better) Translates to: KSYRQQTFLVHF*LSHALRYTMDV Trigger: CACATCCATGGTATATCTCAAGGCATGGCTTAACAAGAAATGGACAAGAAAAGTCTGCTGTCTGTATGACTT 40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 4 transcripts: ENSMUST00000112039.7 ENSMUST00000112040.9 ENSMUST00000196351.2 ENSMUST00000200156.5 |
||
| CDS CAA 72 bp | TATATGCCATCAGACAGCAGGGCTTGGGACTATTATTaGCCACTGAAATTATGCTCATATCGTCACATAATG | + |
|
Preference number: 6 (lower is better) Translates to: YMPSDSRAWDYY*PLKLCSYRHIM Trigger: CATTATGTGACGATATGAGCATAATTTCAGTGGCAAATAATAGTCCCAAGCCCTGCTGTCTGATGGCATATA 40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000112039.7 ENSMUST00000200156.5 |
||
| CDS TCA 72 bp | ACCATTTATGTCAAAGAGCAAGAGAGAGAATCTAGTTaGACAAACAATCACGTCCTTATCACTGACTCCAAA | + |
|
Preference number: 6 (lower is better) Translates to: TIYVKEQERESS*TNNHVLITDSK Trigger: TTTGGAGTCAGTGATAAGGACGTGATTGTTTGTTCAACTAGATTCTCTCTCTTGCTCTTTGACATAAATGGT 38% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000112039.7 ENSMUST00000112040.9 ENSMUST00000200156.5 |
||