Pregenerated sensors for FBXW22 (Mus musculus)
Ensembl gene IDs: ENSMUSG00000070324Ensembl transcript IDs: ENSMUST00000080626.9, ENSMUST00000197213.2
Found 82 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR CCA 90 bp | CTTCTGACTCCTTTAGTCAGGATGAAAGGTGTGCACCACCAAATTTaGCCTCTTCACTGCTTAGAATCACTGAAATCGCCAACCTGTGCT | + |
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Preference number: 1 (lower is better) Translates to: LLTPLVRMKGVHHQI*PLHCLESLKSPTCA Trigger: AGCACAGGTTGGCGATTTCAGTGATTCTAAGCAGTGAAGAGGCCAAATTTGGTGGTGCACACCTTTCATCCTGACTAAAGGAGTCAGAAG 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000080626.9 |
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| 3UTR TCA 90 bp | ACCAAGACAATTGGGCCATCCTTAGTAAATTCAGCTTGCAGTAATTaGCAGGAAAAGGACAGGGCTTTAGTTGCCAGAACTTCCCTGTTG | + |
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Preference number: 1 (lower is better) Translates to: TKTIGPSLVNSACSN*QEKDRALVARTSLL Trigger: CAACAGGGAAGTTCTGGCAACTAAAGCCCTGTCCTTTTCCTGTCAATTACTGCAAGCTGAATTTACTAAGGATGGCCCAATTGTCTTGGT 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000197213.2 |
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| 3UTR GCA 90 bp | GTCCTTATCACTGACTCCAAAATAGTCTGGTTTCCCCTCACGTTCTaGCAGCGAGAAGCTGGCTGTCAAATATTCTTGAATAGTTACTTT | + |
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Preference number: 1 (lower is better) Translates to: VLITDSKIVWFPLTF*QREAGCQIFLNSYF Trigger: AAAGTAACTATTCAAGAATATTTGACAGCCAGCTTCTCGCTGGCAGAACGTGAGGGGAAACCAGACTATTTTGGAGTCAGTGATAAGGAC 43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000197213.2 |
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| 3UTR GCA 90 bp | CAACCCTATACCAATGAAATGACAGATGTCACAGCAAAATGTGCGTaGCTGTGTATACACAAGTGCGTGTGTACATTTAGCCATAGTTTT | + |
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Preference number: 1 (lower is better) Translates to: QPYTNEMTDVTAKCA*LCIHKCVCTFSHSF Trigger: AAAACTATGGCTAAATGTACACACGCACTTGTGTATACACAGGCACGCACATTTTGCTGTGACATCTGTCATTTCATTGGTATAGGGTTG 41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000080626.9 |
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| 3UTR CCA 90 bp | ATCCCTTCCAACTTCATATCAAATGTGTCAAACTTTGTGTTGTTTTaGGGTGAAACTGTGGAGATCAGGGTTATCCTGTCTTCCCTTCTT | + |
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Preference number: 1 (lower is better) Translates to: IPSNFISNVSNFVLF*GETVEIRVILSSLL Trigger: AAGAAGGGAAGACAGGATAACCCTGATCTCCACAGTTTCACCCCAAAACAACACAAAGTTTGACACATTTGATATGAAGTTGGAAGGGAT 41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000197213.2 |
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| 3UTR CCA 90 bp | AATTTTAATTTGCCACAAGATTTCTGCAGTAATAAGCTGCCTACATaGTCTGCTCATCTGAGTCAACCCTATACCAATGAAATGACAGAT | + |
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Preference number: 1 (lower is better) Translates to: NFNLPQDFCSNKLPT*SAHLSQPYTNEMTD Trigger: ATCTGTCATTTCATTGGTATAGGGTTGACTCAGATGAGCAGACCATGTAGGCAGCTTATTACTGCAGAAATCTTGTGGCAAATTAAAATT 38% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000080626.9 |
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| 3UTR-3UTR CCA 90 bp | CAGGGTCCACCCATAGTTTCCAGATCTCTTCTGGGCAGTACTGAAATGTCTGCACCTGTCTTCCCTTCTTaGGGTCCAGAAGACTTTTCG | + |
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Preference number: 2 (lower is better) Translates to: QGPPIVSRSLLGSTEMSAPVFPS*GPEDFS Trigger: CGAAAAGTCTTCTGGACCCCAAGAAGGGAAGACAGG...TGCAGACATTTCAGTACTGCCCAGAAGAGATCTGGAAACTATGGGTGGACCCTG 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000197213.2 |
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| 3UTR-3UTR TCA 90 bp | CCAGATCTCTTCTGGGCAGTACTGAAATGTCTGCAGACGGAGACCATTTATGTCGAGAGAGGATCCAGTTaGACAAACAATCACGTCCTT | + |
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Preference number: 2 (lower is better) Translates to: PDLFWAVLKCLQTETIYVERGSS*TNNHVL Trigger: AAGGACGTGATTGTTTGTTCAACTGGATCCTCTCTC...GACATAAATGGTCTCCGTCTGCAGACATTTCAGTACTGCCCAGAAGAGATCTGG 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000197213.2 |
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| 3UTR-3UTR GCA 90 bp | GGTCCACCCATAGTTTCCAGATCTCTTCTGGGCAGTACTGAAATGTCTGCAGACATGGCCTCAGTAAGCTaGTCATGTAAAACACCTTTA | + |
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Preference number: 2 (lower is better) Translates to: GPPIVSRSLLGSTEMSADMASVS*SCKTPL Trigger: TAAAGGTGTTTTACATGAGCAGCTTACTGAGGCCAT...GTCTGCAGACATTTCAGTACTGCCCAGAAGAGATCTGGAAACTATGGGTGGACC 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000197213.2 |
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| 3UTR-3UTR CCA 90 bp | AGCAGGCTTCTCTCCTCCCATGCATATACATCCAAAGAACCATCATTACAGGTGTTTGGGGTGAAACTGTaGAGATCAGGGTTATCCTGT | + |
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Preference number: 2 (lower is better) Translates to: SRLLSSHAYTSKEPSLQVFGVKL*RSGLSC Trigger: ACAGGATAACCCTGATCTCCACAGTTTCACCCCAAA...CACCTGTAATGATGGTTCTTTGGATGTATATGCATGGGAGGAGAGAAGCCTGCT 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000197213.2 |
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| 3UTR CAA 90 bp | TTTCCCCTCACGTTCTGCCAGCGAGAAGCTGGCTGTCAAATATTCTaGAATAGTTACTTTGTTCCCGATCCCTTCCAACTTCATATCAAA | + |
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Preference number: 2 (lower is better) Translates to: FPLTFCQREAGCQIF*NSYFVPDPFQLHIK Trigger: TTTGATATGAAGTTGGAAGGGATCGGGAACAAAGTAACTATTCAAGAATATTTGACAGCCAGCTTCTCGCTGGCAGAACGTGAGGGGAAA 43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000197213.2 |
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| 3UTR-3UTR GCA 90 bp | GACCATTTATGTCGAAGAGCAAGAGAGAGGATCCAGTTGAACAAACAATCACGTCATATCTACAGTGACTaGAATGTGCATCTCAGGGAG | + |
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Preference number: 2 (lower is better) Translates to: DHLCRRARERIQLNKQSRHIYSD*NVHLRE Trigger: CTCCCTGAGATGCACATTGCAGTCACTGTAGATATG...ACGTGATTGTTTGTTCAACTGGATCCTCTCTCTTGCTCTTCGACATAAATGGTC 43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000197213.2 |
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| 3UTR-3UTR CCA 90 bp | AGCAGGCTTCTCTCCTCCCATGCATATACATCCAAAGAACCATCATTACAGGTGAACTTTGTGTTGTTTTaGGGTGAAACTGTGGAGATC | + |
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Preference number: 2 (lower is better) Translates to: SRLLSSHAYTSKEPSLQVNFVLF*GETVEI Trigger: GATCTCCACAGTTTCACCCCAAAACAACACAAAGTT...CACCTGTAATGATGGTTCTTTGGATGTATATGCATGGGAGGAGAGAAGCCTGCT 43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000197213.2 |
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| 3UTR CAA 90 bp | TTTCAAGAGCAGACGTTCAAGGTATATGCTATCAGACAGCAGGGGTaGGGACTATTAGTCATCACTAAAATTATGCTCACATCGTCGCAT | + |
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Preference number: 2 (lower is better) Translates to: FQEQTFKVYAIRQQG*GLLVITKIMLTSSH Trigger: ATGCGACGATGTGAGCATAATTTTAGTGATGACTAATAGTCCCAACCCCTGCTGTCTGATAGCATATACCTTGAACGTCTGCTCTTGAAA 42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000197213.2 |
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| 3UTR-3UTR TCA 90 bp | CTTCTCTCCTCCCATGCATATACATCCAAAGAACCATCATTACAGGTGACAATGATTGCATATCTACAGTaGCTGCAATGTGCATCTCAG | + |
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Preference number: 2 (lower is better) Translates to: LLSSHAYTSKEPSLQVTMIAYLQ*LQCASQ Trigger: CTGAGATGCACATTGCAGTCACTGTAGATATGCAAT...CATTGTCACCTGTAATGATGGTTCTTTGGATGTATATGCATGGGAGGAGAGAAG 42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000197213.2 |
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| 3UTR-3UTR TCA 90 bp | GTTACTTTGTTCCCGATCCCTTCCAACTTCATATCAAATGTGTCAAACTTTGTGTCAGCTTGCAGTAATTaGCAGGAAAAGGACAGGGCT | + |
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Preference number: 2 (lower is better) Translates to: VTLFPIPSNFISNVSNFVSACSN*QEKDRA Trigger: AGCCCTGTCCTTTTCCTGTCAATTACTGCAAGCTGA...CACAAAGTTTGACACATTTGATATGAAGTTGGAAGGGATCGGGAACAAAGTAAC 42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000197213.2 |
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| 3UTR-3UTR CCA 90 bp | TACACAAGTGCGTGTGTACATTTAGCCATAGTTTTTCTTTCAGAGATAGGTTCTGTGCACCACCAAATTTaGCCTCTTCACTGCTTAGAA | + |
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Preference number: 2 (lower is better) Translates to: YTSACVHLAIVFLSEIGSVHHQI*PLHCLE Trigger: TTCTAAGCAGTGAAGAGGCCAAATTTGGTGGTGCAC...AGAACCTATCTCTGAAAGAAAAACTATGGCTAAATGTACACACGCACTTGTGTA 40% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000080626.9 |
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| 3UTR-3UTR GCA 90 bp | TACACAAGTGCGTGTGTACATTTAGCCATAGTTTTTCTTTCAGAGATAGGTTCTATTTGGCCTCTTCACTaGTTAGAATCACTGAAATCG | + |
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Preference number: 2 (lower is better) Translates to: YTSACVHLAIVFLSEIGSIWPLH*LESLKS Trigger: CGATTTCAGTGATTCTAAGCAGTGAAGAGGCCAAAT...AGAACCTATCTCTGAAAGAAAAACTATGGCTAAATGTACACACGCACTTGTGTA 38% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000080626.9 |
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| 3UTR-3UTR CAA 90 bp | CGGAGACCATTTATGTCGAAGAGCAAGAGAGAGGATCCAGTTGAACAAACAATCGCCAGAACTTCCCTGTaGTGGCAGTCCCACAATTTG | + |
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Preference number: 3 (lower is better) Translates to: RRPFMSKSKREDPVEQTIARTSL*WQSHNL Trigger: CAAATTGTGGGACTGCCACAACAGGGAAGTTCTGGC...GATTGTTTGTTCAACTGGATCCTCTCTCTTGCTCTTCGACATAAATGGTCTCCG 48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000197213.2 |
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| 3UTR-3UTR CAA 90 bp | TTTCCAGATCTCTTCTGGGCAGTACTGAAATGTCTGCAGACGGAGACCATTTATTCCTGTCTTCCCTTCTaGGGGTCCAGAAGACTTTTC | + |
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Preference number: 3 (lower is better) Translates to: FPDLFWAVLKCLQTETIYSCLPF*GSRRLF Trigger: GAAAAGTCTTCTGGACCCCAAGAAGGGAAGACAGGA...ATAAATGGTCTCCGTCTGCAGACATTTCAGTACTGCCCAGAAGAGATCTGGAAA 47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000197213.2 |
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| 3UTR GCA 72 bp | ATGAAAGGTGTGCACCACCAAATTTGGCCTCTTCACTaGTTAGAATCACTGAAATCGCCAACCTGTGCTTGC | + |
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Preference number: 3 (lower is better) Translates to: MKGVHHQIWPLH*LESLKSPTCAC Trigger: GCAAGCACAGGTTGGCGATTTCAGTGATTCTAAGCAGTGAAGAGGCCAAATTTGGTGGTGCACACCTTTCAT 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000080626.9 |
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| 3UTR TCA 72 bp | CGTTCTGCCAGCGAGAAGCTGGCTGTCAAATATTCTTaGATAGTTACTTTGTTCCCGATCCCTTCCAACTTC | + |
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Preference number: 3 (lower is better) Translates to: RSASEKLAVKYS*IVTLFPIPSNF Trigger: GAAGTTGGAAGGGATCGGGAACAAAGTAACTATTCAAGAATATTTGACAGCCAGCTTCTCGCTGGCAGAACG 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000197213.2 |
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| 3UTR GCA 72 bp | ACACAGGGGCTGAGAATTCTGATGGCCTCAGTAAGCTaGTCATGTAAAACACCTTTATCAAGTCATGTAGGC | + |
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Preference number: 3 (lower is better) Translates to: TQGLRILMASVS*SCKTPLSSHVG Trigger: GCCTACATGACTTGATAAAGGTGTTTTACATGAGCAGCTTACTGAGGCCATCAGAATTCTCAGCCCCTGTGT 46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000197213.2 |
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| 3UTR CCA 72 bp | CCTTTAGTCAGGATGAAAGGTGTGCACCACCAAATTTaGCCTCTTCACTGCTTAGAATCACTGAAATCGCCA | + |
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Preference number: 3 (lower is better) Translates to: PLVRMKGVHHQI*PLHCLESLKSP Trigger: TGGCGATTTCAGTGATTCTAAGCAGTGAAGAGGCCAAATTTGGTGGTGCACACCTTTCATCCTGACTAAAGG 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000080626.9 |
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| 3UTR CCA 72 bp | ATGTGTCAAACTTTGTGTTGTTTTGGGGTGAAACTGTaGAGATCAGGGTTATCCTGTCTTCCCTTCTTGGGG | + |
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Preference number: 3 (lower is better) Translates to: MCQTLCCFGVKL*RSGLSCLPFLG Trigger: CCCCAAGAAGGGAAGACAGGATAACCCTGATCTCCACAGTTTCACCCCAAAACAACACAAAGTTTGACACAT 46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000197213.2 |
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| 3UTR-3UTR CAA 90 bp | CTGGTTTCCCCTCACGTTCTGCCAGCGAGAAGCTGGCTGTCAAATATTCTTGAACAAATGTGTCAAACTTaGTGTTGTTTTGGGGTGAAA | + |
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Preference number: 3 (lower is better) Translates to: LVSPHVLPARSWLSNILEQMCQT*CCFGVK Trigger: TTTCACCCCAAAACAACACAAAGTTTGACACATTTG...TTCAAGAATATTTGACAGCCAGCTTCTCGCTGGCAGAACGTGAGGGGAAACCAG 44% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 1 transcripts: ENSMUST00000197213.2 |
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| 3UTR TCA 72 bp | TACATGGTCTGCTCATCTGAGTCAACCCTATACCAATaGAATGACAGATGTCACAGCAAAATGTGCGTGCCT | + |
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Preference number: 3 (lower is better) Translates to: YMVCSSESTLYQ*NDRCHSKMCVP Trigger: AGGCACGCACATTTTGCTGTGACATCTGTCATTTCATTGGTATAGGGTTGACTCAGATGAGCAGACCATGTA 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000080626.9 |
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| 3UTR TCA 72 bp | AGGATCCAGTTGAACAAACAATCACGTCCTTATCACTaGCTCCAAAATAGTCTGGTTTCCCCTCACGTTCTG | + |
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Preference number: 3 (lower is better) Translates to: RIQLNKQSRPYH*LQNSLVSPHVL Trigger: CAGAACGTGAGGGGAAACCAGACTATTTTGGAGTCAGTGATAAGGACGTGATTGTTTGTTCAACTGGATCCT 44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000197213.2 |
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| 3UTR CCA 72 bp | AAGGACAGGGCTTTAGTTGCCAGAACTTCCCTGTTGTaGCAGTCCCACAATTTGATAGTTGATTGCATATCT | + |
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Preference number: 3 (lower is better) Translates to: KDRALVARTSLL*QSHNLIVDCIS Trigger: AGATATGCAATCAACTATCAAATTGTGGGACTGCCACAACAGGGAAGTTCTGGCAACTAAAGCCCTGTCCTT 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000197213.2 |
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| 3UTR-3UTR CAA 90 bp | CTTCTCTCCTCCCATGCATATACATCCAAAGAACCATCATTACAGGTGACAATGAGAGAGAGGATCCAGTaGAACAAACAATCACGTCCT | + |
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Preference number: 3 (lower is better) Translates to: LLSSHAYTSKEPSLQVTMRERIQ*NKQSRP Trigger: AGGACGTGATTGTTTGTTCAACTGGATCCTCTCTCT...CATTGTCACCTGTAATGATGGTTCTTTGGATGTATATGCATGGGAGGAGAGAAG 43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000197213.2 |
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| 3UTR TCA 72 bp | ATTGGGCCATCCTTAGTAAATTCAGCTTGCAGTAATTaGCAGGAAAAGGACAGGGCTTTAGTTGCCAGAACT | + |
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Preference number: 3 (lower is better) Translates to: IGPSLVNSACSN*QEKDRALVART Trigger: AGTTCTGGCAACTAAAGCCCTGTCCTTTTCCTGTCAATTACTGCAAGCTGAATTTACTAAGGATGGCCCAAT 43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000197213.2 |
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| 3UTR GCA 72 bp | ACCAATGAAATGACAGATGTCACAGCAAAATGTGCGTaGCTGTGTATACACAAGTGCGTGTGTACATTTAGC | + |
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Preference number: 3 (lower is better) Translates to: TNEMTDVTAKCA*LCIHKCVCTFS Trigger: GCTAAATGTACACACGCACTTGTGTATACACAGGCACGCACATTTTGCTGTGACATCTGTCATTTCATTGGT 43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000080626.9 |
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| 3UTR-3UTR CAA 90 bp | TTTCCAGATCTCTTCTGGGCAGTACTGAAATGTCTGCAGACGGAGACCATTTATTGGCAGTCCCACAATTaGATAGTTGATTGCATATCT | + |
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Preference number: 3 (lower is better) Translates to: FPDLFWAVLKCLQTETIYWQSHN*IVDCIS Trigger: AGATATGCAATCAACTATCAAATTGTGGGACTGCCA...ATAAATGGTCTCCGTCTGCAGACATTTCAGTACTGCCCAGAAGAGATCTGGAAA 42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000197213.2 |
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| 3UTR TCA 72 bp | CATATCAAATGTGTCAAACTTTGTGTTGTTTTGGGGTaGAACTGTGGAGATCAGGGTTATCCTGTCTTCCCT | + |
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Preference number: 3 (lower is better) Translates to: HIKCVKLCVVLG*NCGDQGYPVFP Trigger: AGGGAAGACAGGATAACCCTGATCTCCACAGTTTCACCCCAAAACAACACAAAGTTTGACACATTTGATATG 42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000197213.2 |
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| 3UTR CCA 72 bp | AACTTCATATCAAATGTGTCAAACTTTGTGTTGTTTTaGGGTGAAACTGTGGAGATCAGGGTTATCCTGTCT | + |
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Preference number: 3 (lower is better) Translates to: NFISNVSNFVLF*GETVEIRVILS Trigger: AGACAGGATAACCCTGATCTCCACAGTTTCACCCCAAAACAACACAAAGTTTGACACATTTGATATGAAGTT 39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000197213.2 |
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| 3UTR-3UTR CAA 90 bp | TTGTTCCCGATCCCTTCCAACTTCATATCAAATGTGTCAAACTTTGTGTTGTTTGGGAATACATTCACCTaGGAAATGAGGTATAAGTCA | + |
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Preference number: 3 (lower is better) Translates to: LFPIPSNFISNVSNFVLFGNTFT*EMRYKS Trigger: TGACTTATACCTCATTTCCAAGGTGAATGTATTCCC...AAACAACACAAAGTTTGACACATTTGATATGAAGTTGGAAGGGATCGGGAACAA 38% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000197213.2 |
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| CDS-3UTR TCA 90 bp | TCTGACTCCTTTAGTCAGGATGAAAGGTGTGCACCACCAAATTTGGCCTCTTCACATGGAGCGGTAGGGTaGCCATGTCACAGTAGAACC | + |
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Preference number: 4 (lower is better) Translates to: SDSFSQDERCAPPNLASSHGAVG*PCHSRT Trigger: GGTTCTACTGTGACATGGTCACCCTACCGCTCCATG...TGAAGAGGCCAAATTTGGTGGTGCACACCTTTCATCCTGACTAAAGGAGTCAGA 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000080626.9 |
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| CDS-3UTR CCA 90 bp | GGCTGGTCTCAGAACTCAGATCTTCCATCTGCTTCTGACTCCTTTAGTCAGGATCCTGTCTTCCCTTCTTaGGGTCCAGAAGACTTTTCG | + |
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Preference number: 4 (lower is better) Translates to: GWSQNSDLPSASDSFSQDPVFPS*GPEDFS Trigger: CGAAAAGTCTTCTGGACCCCAAGAAGGGAAGACAGG...ATCCTGACTAAAGGAGTCAGAAGCAGATGGAAGATCTGAGTTCTGAGACCAGCC 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000080626.9 |
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| CDS-3UTR GCA 90 bp | CTGACTCCTTTAGTCAGGATGAAAGGTGTGCACCACCAAATTTGGCCTCTTCACGAAATCTTCTGGCTTTaGCCGGGATTTGGCATGTTC | + |
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Preference number: 4 (lower is better) Translates to: LTPLVRMKGVHHQIWPLHEIFWL*PGFGMF Trigger: GAACATGCCAAATCCCGGGCAAAGCCAGAAGATTTC...GTGAAGAGGCCAAATTTGGTGGTGCACACCTTTCATCCTGACTAAAGGAGTCAG 48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000080626.9 |
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| CDS-3UTR CCA 90 bp | TCAGATCTTCCATCTGCTTCTGACTCCTTTAGTCAGGATGAAAGGTGTGCACCAGCTTTGCCCGGGATTTaGCATGTTCTTGCCATGTTC | + |
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Preference number: 4 (lower is better) Translates to: SDLPSASDSFSQDERCAPALPGI*HVLAMF Trigger: GAACATGGCAAGAACATGCCAAATCCCGGGCAAAGC...TGGTGCACACCTTTCATCCTGACTAAAGGAGTCAGAAGCAGATGGAAGATCTGA 48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000080626.9 |
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| CDS-3UTR CCA 90 bp | TTCCATCTGCTTCTGACTCCTTTAGTCAGGATGAAAGGTGTGCACCACCAAATTATAGGAGGGCTGTACTaGGCTTACCCAGGTCATAGC | + |
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Preference number: 4 (lower is better) Translates to: FHLLLTPLVRMKGVHHQIIGGLY*AYPGHS Trigger: GCTATGACCTGGGTAAGCCCAGTACAGCCCTCCTAT...AATTTGGTGGTGCACACCTTTCATCCTGACTAAAGGAGTCAGAAGCAGATGGAA 48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000080626.9 |
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| CDS-3UTR TCA 90 bp | GAAATGACAGATGTCACAGCAAAATGTGCGTGCCTGTGTATACACAAGTGCGTGTCAGCTTGCAGTAATTaGCAGGAAAAGGACAGGGCT | + |
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Preference number: 4 (lower is better) Translates to: EMTDVTAKCACLCIHKCVSACSN*QEKDRA Trigger: AGCCCTGTCCTTTTCCTGTCAATTACTGCAAGCTGA...CACGCACTTGTGTATACACAGGCACGCACATTTTGCTGTGACATCTGTCATTTC 47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000080626.9 |
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| CDS-3UTR TCA 90 bp | TCAGATCTTCCATCTGCTTCTGACTCCTTTAGTCAGGATGAAAGGTGTGCACCATGTGTTGTTTTGGGGTaGAACTGTGGAGATCAGGGT | + |
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Preference number: 4 (lower is better) Translates to: SDLPSASDSFSQDERCAPCVVLG*NCGDQG Trigger: ACCCTGATCTCCACAGTTTCACCCCAAAACAACACA...TGGTGCACACCTTTCATCCTGACTAAAGGAGTCAGAAGCAGATGGAAGATCTGA 47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000080626.9 |
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| CDS-3UTR GCA 90 bp | TGTAGACCAGGCTGGTCTCAGAACTCAGATCTTCCATCTGCTTCTGACTCCTTTGACGTTCAAGGTATATaGTATCAGACAGCAGGGGTT | + |
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Preference number: 4 (lower is better) Translates to: CRPGWSQNSDLPSASDSFDVQGI*YQTAGV Trigger: AACCCCTGCTGTCTGATAGCATATACCTTGAACGTC...AAAGGAGTCAGAAGCAGATGGAAGATCTGAGTTCTGAGACCAGCCTGGTCTACA 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000080626.9 |
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| CDS-3UTR CCA 90 bp | CTGACTCCTTTAGTCAGGATGAAAGGTGTGCACCACCAAATTTGGCCTCTTCACTTTGGGGTGAAACTGTaGAGATCAGGGTTATCCTGT | + |
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Preference number: 4 (lower is better) Translates to: LTPLVRMKGVHHQIWPLHFGVKL*RSGLSC Trigger: ACAGGATAACCCTGATCTCCACAGTTTCACCCCAAA...GTGAAGAGGCCAAATTTGGTGGTGCACACCTTTCATCCTGACTAAAGGAGTCAG 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000080626.9 |
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| CDS-3UTR TCA 90 bp | TGTAGACCAGGCTGGTCTCAGAACTCAGATCTTCCATCTGCTTCTGACTCCTTTATTGCATATCTACAGTaGCTGCAATGTGCATCTCAG | + |
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Preference number: 4 (lower is better) Translates to: CRPGWSQNSDLPSASDSFIAYLQ*LQCASQ Trigger: CTGAGATGCACATTGCAGTCACTGTAGATATGCAAT...AAAGGAGTCAGAAGCAGATGGAAGATCTGAGTTCTGAGACCAGCCTGGTCTACA 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000080626.9 |
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| CDS-3UTR TCA 90 bp | GGCTGGTCTCAGAACTCAGATCTTCCATCTGCTTCTGACTCCTTTAGTCAGGATTCACGTCCTTATCACTaGCTCCAAAATAGTCTGGTT | + |
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Preference number: 4 (lower is better) Translates to: GWSQNSDLPSASDSFSQDSRPYH*LQNSLV Trigger: AACCAGACTATTTTGGAGTCAGTGATAAGGACGTGA...ATCCTGACTAAAGGAGTCAGAAGCAGATGGAAGATCTGAGTTCTGAGACCAGCC 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000080626.9 |
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| CDS-3UTR GCA 90 bp | TCTGACTCCTTTAGTCAGGATGAAAGGTGTGCACCACCAAATTTGGCCTCTTCACATATCTACAGTGACTaGAATGTGCATCTCAGGGAG | + |
|
Preference number: 4 (lower is better) Translates to: SDSFSQDERCAPPNLASSHIYSD*NVHLRE Trigger: CTCCCTGAGATGCACATTGCAGTCACTGTAGATATG...TGAAGAGGCCAAATTTGGTGGTGCACACCTTTCATCCTGACTAAAGGAGTCAGA 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000080626.9 |
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| CDS-3UTR GCA 90 bp | GAAATGACAGATGTCACAGCAAAATGTGCGTGCCTGTGTATACACAAGTGCGTGGCTTCTCTCCTCCCATaGATATACATCCAAAGAACC | + |
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Preference number: 4 (lower is better) Translates to: EMTDVTAKCACLCIHKCVASLLP*IYIQRT Trigger: GGTTCTTTGGATGTATATGCATGGGAGGAGAGAAGC...CACGCACTTGTGTATACACAGGCACGCACATTTTGCTGTGACATCTGTCATTTC 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000080626.9 |
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| CDS-3UTR CCA 90 bp | CAGATCTTCCATCTGCTTCTGACTCCTTTAGTCAGGATGAAAGGTGTGCACCACTTTCCAGATCTCTTCTaGGCAGTACTGAAATGTCTG | + |
|
Preference number: 4 (lower is better) Translates to: QIFHLLLTPLVRMKGVHHFPDLF*AVLKCL Trigger: CAGACATTTCAGTACTGCCCAGAAGAGATCTGGAAA...GTGGTGCACACCTTTCATCCTGACTAAAGGAGTCAGAAGCAGATGGAAGATCTG 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000080626.9 |
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| 3UTR CAA 72 bp | TCCTTTAGTCAGGATGAAAGGTGTGCACCACCAAATTaGGCCTCTTCACTGCTTAGAATCACTGAAATCGCC | + |
|
Preference number: 4 (lower is better) Translates to: SFSQDERCAPPN*ASSLLRITEIA Trigger: GGCGATTTCAGTGATTCTAAGCAGTGAAGAGGCCAAATTTGGTGGTGCACACCTTTCATCCTGACTAAAGGA 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000080626.9 |
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| 3UTR CAA 72 bp | AAACTGTGGAGATCAGGGTTATCCTGTCTTCCCTTCTaGGGGTCCAGAAGACTTTTCGGATTAGTGGAACTT | + |
|
Preference number: 4 (lower is better) Translates to: KLWRSGLSCLPF*GSRRLFGLVEL Trigger: AAGTTCCACTAATCCGAAAAGTCTTCTGGACCCCAAGAAGGGAAGACAGGATAACCCTGATCTCCACAGTTT 46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000197213.2 |
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| CDS-3UTR CCA 90 bp | GGCTGGTCTCAGAACTCAGATCTTCCATCTGCTTCTGACTCCTTTAGTCAGGATAACTTTGTGTTGTTTTaGGGTGAAACTGTGGAGATC | + |
|
Preference number: 4 (lower is better) Translates to: GWSQNSDLPSASDSFSQDNFVLF*GETVEI Trigger: GATCTCCACAGTTTCACCCCAAAACAACACAAAGTT...ATCCTGACTAAAGGAGTCAGAAGCAGATGGAAGATCTGAGTTCTGAGACCAGCC 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000080626.9 |
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| 3UTR CAA 72 bp | GTTGCCAGAACTTCCCTGTTGTGGCAGTCCCACAATTaGATAGTTGATTGCATATCTACAGTGACTGCAATG | + |
|
Preference number: 4 (lower is better) Translates to: VARTSLLWQSHN*IVDCISTVTAM Trigger: CATTGCAGTCACTGTAGATATGCAATCAACTATCAAATTGTGGGACTGCCACAACAGGGAAGTTCTGGCAAC 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000197213.2 |
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| CDS-3UTR CCA 90 bp | CTGACTCCTTTAGTCAGGATGAAAGGTGTGCACCACCAAATTTGGCCTCTTCACTTCATCAATACTGTATaGGAATACATTCACCTTGGA | + |
|
Preference number: 4 (lower is better) Translates to: LTPLVRMKGVHHQIWPLHFINTV*EYIHLG Trigger: TCCAAGGTGAATGTATTCCCATACAGTATTGATGAA...GTGAAGAGGCCAAATTTGGTGGTGCACACCTTTCATCCTGACTAAAGGAGTCAG 42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000080626.9 |
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| CDS-3UTR GCA 90 bp | TCAGATCTTCCATCTGCTTCTGACTCCTTTAGTCAGGATGAAAGGTGTGCACCAGATATAACATGGATGTaGCCAAAATTCAAACTTCAC | + |
|
Preference number: 4 (lower is better) Translates to: SDLPSASDSFSQDERCAPDITWM*PKFKLH Trigger: GTGAAGTTTGAATTTTGGGCACATCCATGTTATATC...TGGTGCACACCTTTCATCCTGACTAAAGGAGTCAGAAGCAGATGGAAGATCTGA 41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000080626.9 |
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| CDS-3UTR GCA 90 bp | ACCAATGAAATGACAGATGTCACAGCAAAATGTGCGTGCCTGTGTATACACAAGATGGCCTCAGTAAGCTaGTCATGTAAAACACCTTTA | + |
|
Preference number: 4 (lower is better) Translates to: TNEMTDVTAKCACLCIHKMASVS*SCKTPL Trigger: TAAAGGTGTTTTACATGAGCAGCTTACTGAGGCCAT...CTTGTGTATACACAGGCACGCACATTTTGCTGTGACATCTGTCATTTCATTGGT 41% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000080626.9 |
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| CDS-3UTR CCA 90 bp | TTCCATCTGCTTCTGACTCCTTTAGTCAGGATGAAAGGTGTGCACCACCAAATTCCTGGAGATATAACATaGATGTGCCCAAAATTCAAA | + |
|
Preference number: 4 (lower is better) Translates to: FHLLLTPLVRMKGVHHQIPGDIT*MCPKFK Trigger: TTTGAATTTTGGGCACATCCATGTTATATCTCCAGG...AATTTGGTGGTGCACACCTTTCATCCTGACTAAAGGAGTCAGAAGCAGATGGAA 41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000080626.9 |
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| CDS-3UTR CCA 90 bp | ACCAATGAAATGACAGATGTCACAGCAAAATGTGCGTGCCTGTGTATACACAAGTTGTTAAGCCATGCCTaGAGATATAACATGGATGTG | + |
|
Preference number: 4 (lower is better) Translates to: TNEMTDVTAKCACLCIHKLLSHA*RYNMDV Trigger: CACATCCATGTTATATCTCCAGGCATGGCTTAACAA...CTTGTGTATACACAGGCACGCACATTTTGCTGTGACATCTGTCATTTCATTGGT 41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000080626.9 |
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| CDS-3UTR CCA 90 bp | TACACAAGTGCGTGTGTACATTTAGCCATAGTTTTTCTTTCAGAGATAGGTTCTGACTCCAAAATAGTCTaGTTTCCCCTCACGTTCTGC | + |
|
Preference number: 4 (lower is better) Translates to: YTSACVHLAIVFLSEIGSDSKIV*FPLTFC Trigger: GCAGAACGTGAGGGGAAACCAGACTATTTTGGAGTC...AGAACCTATCTCTGAAAGAAAAACTATGGCTAAATGTACACACGCACTTGTGTA 41% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 1 transcripts: ENSMUST00000080626.9 |
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| CDS-3UTR TCA 90 bp | TACACAAGTGCGTGTGTACATTTAGCCATAGTTTTTCTTTCAGAGATAGGTTCTGCCATGTTCTGTAAATaGAGAACTGCTTCCATGTCT | + |
|
Preference number: 4 (lower is better) Translates to: YTSACVHLAIVFLSEIGSAMFCK*RTASMS Trigger: AGACATGGAAGCAGTTCTTCATTTACAGAACATGGC...AGAACCTATCTCTGAAAGAAAAACTATGGCTAAATGTACACACGCACTTGTGTA 39% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000080626.9 |
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| CDS-3UTR CAA 90 bp | TCAGATCTTCCATCTGCTTCTGACTCCTTTAGTCAGGATGAAAGGTGTGCACCAGGCTTTGCCCGGGATTaGGCATGTTCTTGCCATGTT | + |
|
Preference number: 5 (lower is better) Translates to: SDLPSASDSFSQDERCAPGFARD*ACSCHV Trigger: AACATGGCAAGAACATGCCAAATCCCGGGCAAAGCC...TGGTGCACACCTTTCATCCTGACTAAAGGAGTCAGAAGCAGATGGAAGATCTGA 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000080626.9 |
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| CDS-3UTR CAA 90 bp | TGTAGACCAGGCTGGTCTCAGAACTCAGATCTTCCATCTGCTTCTGACTCCTTTTCCTGTCTTCCCTTCTaGGGGTCCAGAAGACTTTTC | + |
|
Preference number: 5 (lower is better) Translates to: CRPGWSQNSDLPSASDSFSCLPF*GSRRLF Trigger: GAAAAGTCTTCTGGACCCCAAGAAGGGAAGACAGGA...AAAGGAGTCAGAAGCAGATGGAAGATCTGAGTTCTGAGACCAGCCTGGTCTACA 49% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 1 transcripts: ENSMUST00000080626.9 |
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| CDS GCA 90 bp | AGTAGAACCATCTCTTCTGACACAACCTCCTCCACAGGACATCACTaGTTGCAAGTTCATTCCAGTTCTTGTTCACTTGGGCAACCTGTA | + |
|
Preference number: 5 (lower is better) Translates to: SRTISSDTTSSTGHH*LQVHSSSCSLGQPV Trigger: TACAGGTTGCCCAAGTGAACAAGAACTGGAATGAACTTGCAAGCAGTGATGTCCTGTGGAGGAGGTTGTGTCAGAAGAGATGGTTCTACT 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000080626.9 |
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| CDS-3UTR CAA 90 bp | ACAAGTGCGTGTGTACATTTAGCCATAGTTTTTCTTTCAGAGATAGGTTCTCTTTGCTTCCATGTCTCTTaGCCATGGAGCGGTAGGGTG | + |
|
Preference number: 5 (lower is better) Translates to: TSACVHLAIVFLSEIGSLCFHVS*PWSGRV Trigger: CACCCTACCGCTCCATGGCAAAGAGACATGGAAGCA...AAGAGAACCTATCTCTGAAAGAAAAACTATGGCTAAATGTACACACGCACTTGT 44% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000080626.9 |
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| CDS-3UTR CAA 90 bp | CTGACTCCTTTAGTCAGGATGAAAGGTGTGCACCACCAAATTTGGCCTCTTCACGGATTTGGCATGTTCTaGCCATGTTCTGTAAATGAA | + |
|
Preference number: 5 (lower is better) Translates to: LTPLVRMKGVHHQIWPLHGFGMF*PCSVNE Trigger: TTCATTTACAGAACATGGCAAGAACATGCCAAATCC...GTGAAGAGGCCAAATTTGGTGGTGCACACCTTTCATCCTGACTAAAGGAGTCAG 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000080626.9 |
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| CDS-3UTR CAA 90 bp | TTCCATCTGCTTCTGACTCCTTTAGTCAGGATGAAAGGTGTGCACCACCAAATTAGAGAGAGGATCCAGTaGAACAAACAATCACGTCCT | + |
|
Preference number: 5 (lower is better) Translates to: FHLLLTPLVRMKGVHHQIRERIQ*NKQSRP Trigger: AGGACGTGATTGTTTGTTCAACTGGATCCTCTCTCT...AATTTGGTGGTGCACACCTTTCATCCTGACTAAAGGAGTCAGAAGCAGATGGAA 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000080626.9 |
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| CDS-3UTR CAA 90 bp | ACAAGTGCGTGTGTACATTTAGCCATAGTTTTTCTTTCAGAGATAGGTTCTCTTGCCAGAACTTCCCTGTaGTGGCAGTCCCACAATTTG | + |
|
Preference number: 5 (lower is better) Translates to: TSACVHLAIVFLSEIGSLARTSL*WQSHNL Trigger: CAAATTGTGGGACTGCCACAACAGGGAAGTTCTGGC...AAGAGAACCTATCTCTGAAAGAAAAACTATGGCTAAATGTACACACGCACTTGT 43% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000080626.9 |
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| CDS-3UTR CAA 90 bp | TCTGACTCCTTTAGTCAGGATGAAAGGTGTGCACCACCAAATTTGGCCTCTTCAGGGAATACATTCACCTaGGAAATGAGGTATAAGTCA | + |
|
Preference number: 5 (lower is better) Translates to: SDSFSQDERCAPPNLASSGNTFT*EMRYKS Trigger: TGACTTATACCTCATTTCCAAGGTGAATGTATTCCC...TGAAGAGGCCAAATTTGGTGGTGCACACCTTTCATCCTGACTAAAGGAGTCAGA 43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000080626.9 |
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| CDS CCA 90 bp | ATGCCTGGAGATATAACATGGATGTGCCCAAAATTCAAACTTCACTaGAATTTCCTTGTAAGTGAAATCTTCTGGCTTTGCCCGGGATTT | + |
|
Preference number: 5 (lower is better) Translates to: MPGDITWMCPKFKLH*NFLVSEIFWLCPGF Trigger: AAATCCCGGGCAAAGCCAGAAGATTTCACTTACAAGGAAATTCCAGTGAAGTTTGAATTTTGGGCACATCCATGTTATATCTCCAGGCAT 41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000080626.9 |
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| CDS-3UTR CAA 90 bp | ACCAATGAAATGACAGATGTCACAGCAAAATGTGCGTGCCTGTGTATACACAAGTGGCAGTCCCACAATTaGATAGTTGATTGCATATCT | + |
|
Preference number: 5 (lower is better) Translates to: TNEMTDVTAKCACLCIHKWQSHN*IVDCIS Trigger: AGATATGCAATCAACTATCAAATTGTGGGACTGCCA...CTTGTGTATACACAGGCACGCACATTTTGCTGTGACATCTGTCATTTCATTGGT 41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000080626.9 |
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| CDS GCA 90 bp | TTCAAACTTCACTGGAATTTCCTTGTAAGTGAAATCTTCTGGCTTTaGCCGGGATTTGGCATGTTCTTGCCATGTTCTGTAAATGAAGAA | + |
|
Preference number: 5 (lower is better) Translates to: FKLHWNFLVSEIFWL*PGFGMFLPCSVNEE Trigger: TTCTTCATTTACAGAACATGGCAAGAACATGCCAAATCCCGGGCAAAGCCAGAAGATTTCACTTACAAGGAAATTCCAGTGAAGTTTGAA 40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000080626.9 |
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| CDS CCA 90 bp | CCAAAATTCAAACTTCACTGGAATTTCCTTGTAAGTGAAATCTTCTaGCTTTGCCCGGGATTTGGCATGTTCTTGCCATGTTCTGTAAAT | + |
|
Preference number: 5 (lower is better) Translates to: PKFKLHWNFLVSEIF*LCPGFGMFLPCSVN Trigger: ATTTACAGAACATGGCAAGAACATGCCAAATCCCGGGCAAAGCCAGAAGATTTCACTTACAAGGAAATTCCAGTGAAGTTTGAATTTTGG 40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000080626.9 |
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| CDS-3UTR CAA 90 bp | TACACAAGTGCGTGTGTACATTTAGCCATAGTTTTTCTTTCAGAGATAGGTTCTCAAATGTGTCAAACTTaGTGTTGTTTTGGGGTGAAA | + |
|
Preference number: 5 (lower is better) Translates to: YTSACVHLAIVFLSEIGSQMCQT*CCFGVK Trigger: TTTCACCCCAAAACAACACAAAGTTTGACACATTTG...AGAACCTATCTCTGAAAGAAAAACTATGGCTAAATGTACACACGCACTTGTGTA 37% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 1 transcripts: ENSMUST00000080626.9 |
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| CDS TCA 72 bp | ACTGCTTCCATGTCTCTTTGCCATGGAGCGGTAGGGTaGCCATGTCACAGTAGAACCATCTCTTCTGACACA | + |
|
Preference number: 6 (lower is better) Translates to: TASMSLCHGAVG*PCHSRTISSDT Trigger: TGTGTCAGAAGAGATGGTTCTACTGTGACATGGTCACCCTACCGCTCCATGGCAAAGAGACATGGAAGCAGT 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000080626.9 |
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| CDS TCA 72 bp | CCCGGGATTTGGCATGTTCTTGCCATGTTCTGTAAATaGAGAACTGCTTCCATGTCTCTTTGCCATGGAGCG | + |
|
Preference number: 6 (lower is better) Translates to: PGIWHVLAMFCK*RTASMSLCHGA Trigger: CGCTCCATGGCAAAGAGACATGGAAGCAGTTCTTCATTTACAGAACATGGCAAGAACATGCCAAATCCCGGG 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000080626.9 |
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| CDS GCA 72 bp | CTTCTGACACAACCTCCTCCACAGGACATCACTGCTTaGAAGTTCATTCCAGTTCTTGTTCACTTGGGCAAC | + |
|
Preference number: 6 (lower is better) Translates to: LLTQPPPQDITA*KFIPVLVHLGN Trigger: GTTGCCCAAGTGAACAAGAACTGGAATGAACTTGCAAGCAGTGATGTCCTGTGGAGGAGGTTGTGTCAGAAG 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000080626.9 |
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| CDS CAA 90 bp | AGAACCATCTCTTCTGACACAACCTCCTCCACAGGACATCACTGCTaGCAAGTTCATTCCAGTTCTTGTTCACTTGGGCAACCTGTAGCA | + |
|
Preference number: 6 (lower is better) Translates to: RTISSDTTSSTGHHC*QVHSSSCSLGQPVA Trigger: TGCTACAGGTTGCCCAAGTGAACAAGAACTGGAATGAACTTGCAAGCAGTGATGTCCTGTGGAGGAGGTTGTGTCAGAAGAGATGGTTCT 48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000080626.9 |
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| CDS GCA 72 bp | ATCTCTTCTGACACAACCTCCTCCACAGGACATCACTaGTTGCAAGTTCATTCCAGTTCTTGTTCACTTGGG | + |
|
Preference number: 6 (lower is better) Translates to: ISSDTTSSTGHH*LQVHSSSCSLG Trigger: CCCAAGTGAACAAGAACTGGAATGAACTTGCAAGCAGTGATGTCCTGTGGAGGAGGTTGTGTCAGAAGAGAT 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000080626.9 |
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| CDS CAA 72 bp | TCTTCTGACACAACCTCCTCCACAGGACATCACTGCTaGCAAGTTCATTCCAGTTCTTGTTCACTTGGGCAA | + |
|
Preference number: 6 (lower is better) Translates to: SSDTTSSTGHHC*QVHSSSCSLGQ Trigger: TTGCCCAAGTGAACAAGAACTGGAATGAACTTGCAAGCAGTGATGTCCTGTGGAGGAGGTTGTGTCAGAAGA 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000080626.9 |
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| CDS CAA 90 bp | CTTGTAAGTGAAATCTTCTGGCTTTGCCCGGGATTTGGCATGTTCTaGCCATGTTCTGTAAATGAAGAACTGCTTCCATGTCTCTTTGCC | + |
|
Preference number: 6 (lower is better) Translates to: LVSEIFWLCPGFGMF*PCSVNEELLPCLFA Trigger: GGCAAAGAGACATGGAAGCAGTTCTTCATTTACAGAACATGGCAAGAACATGCCAAATCCCGGGCAAAGCCAGAAGATTTCACTTACAAG 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000080626.9 |
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| CDS CAA 72 bp | GAAATCTTCTGGCTTTGCCCGGGATTTGGCATGTTCTaGCCATGTTCTGTAAATGAAGAACTGCTTCCATGT | + |
|
Preference number: 6 (lower is better) Translates to: EIFWLCPGFGMF*PCSVNEELLPC Trigger: ACATGGAAGCAGTTCTTCATTTACAGAACATGGCAAGAACATGCCAAATCCCGGGCAAAGCCAGAAGATTTC 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000080626.9 |
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