RADAR | Search for sensor designs | Human genes | Mouse genes | Code

Pregenerated sensors for FBXW18 (Mus musculus)

Ensembl gene IDs: ENSMUSG00000074059

Ensembl transcript IDs: ENSMUST00000098359.4

Found 47 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).

Type Sensor Details
CDS-3UTR CCA 90 bp CTTGCAAATAGACCTTTATTATCATTGAGGAAGAGGACACACAACCCACTCAGACACTTACTGAGTTGCTaGCATCTCTCCTCCCATGCG +
Preference number: 4 (lower is better)
Translates to: LANRPLLSLRKRTHNPLRHLLSC*HLSSHA
Trigger: CGCATGGGAGGAGAGATGCCAGCAACTCAGTAAGTG...TCTGAGTGGGTTGTGTGTCCTCTTCCTCAATGATAATAAAGGTCTATTTGCAAG
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000098359.4
CDS-3UTR CCA 90 bp CTTGCAAATAGACCTTTATTATCATTGAGGAAGAGGACACACAACCCACTCAGAGCTTTGCCCGGGTCTTaGTGTGTTCTTGATATGTTC +
Preference number: 4 (lower is better)
Translates to: LANRPLLSLRKRTHNPLRALPGS*CVLDMF
Trigger: GAACATATCAAGAACACACCAAGACCCGGGCAAAGC...TCTGAGTGGGTTGTGTGTCCTCTTCCTCAATGATAATAAAGGTCTATTTGCAAG
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000098359.4
CDS-3UTR CCA 90 bp CTTGCAAATAGACCTTTATTATCATTGAGGAAGAGGACACACAACCCACTCAGAAGTAGTTGGCTGTACTaGGCTTACCCAGGTCATAAC +
Preference number: 4 (lower is better)
Translates to: LANRPLLSLRKRTHNPLRSSWLY*AYPGHN
Trigger: GTTATGACCTGGGTAAGCCCAGTACAGCCAACTACT...TCTGAGTGGGTTGTGTGTCCTCTTCCTCAATGATAATAAAGGTCTATTTGCAAG
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000098359.4
CDS-3UTR TCA 90 bp CTTGCAAATAGACCTTTATTATCATTGAGGAAGAGGACACACAACCCACTCAGAAGACACCATATATGCTaGAGAGCAAGAGAGAGGATC +
Preference number: 4 (lower is better)
Translates to: LANRPLLSLRKRTHNPLRRHHIC*RARERI
Trigger: GATCCTCTCTCTTGCTCTTCAGCATATATGGTGTCT...TCTGAGTGGGTTGTGTGTCCTCTTCCTCAATGATAATAAAGGTCTATTTGCAAG
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000098359.4
CDS-3UTR TCA 90 bp CTTGCAAATAGACCTTTATTATCATTGAGGAAGAGGACACACAACCCACTCAGAAGTGAATATCTACAGTaGCTGCAATGTGCATCTCAG +
Preference number: 4 (lower is better)
Translates to: LANRPLLSLRKRTHNPLRSEYLQ*LQCASQ
Trigger: CTGAGATGCACATTGCAGTCACTGTAGATATTCACT...TCTGAGTGGGTTGTGTGTCCTCTTCCTCAATGATAATAAAGGTCTATTTGCAAG
41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000098359.4
CDS-3UTR CCA 90 bp CTTGCAAATAGACCTTTATTATCATTGAGGAAGAGGACACACAACCCACTCAGACATGAATATCCCAGGTaGAAATCTTGGTCATGGAAG +
Preference number: 4 (lower is better)
Translates to: LANRPLLSLRKRTHNPLRHEYPR*KSWSWK
Trigger: CTTCCATGACCAAGATTTCCACCTGGGATATTCATG...TCTGAGTGGGTTGTGTGTCCTCTTCCTCAATGATAATAAAGGTCTATTTGCAAG
41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000098359.4
CDS-3UTR TCA 90 bp CTTGCAAATAGACCTTTATTATCATTGAGGAAGAGGACACACAACCCACTCAGAAAATTTCTTTGTAGGTaGAATCTTCTGGCTTTGCCC +
Preference number: 4 (lower is better)
Translates to: LANRPLLSLRKRTHNPLRKFLCR*NLLALP
Trigger: GGGCAAAGCCAGAAGATTTCACCTACAAAGAAATTT...TCTGAGTGGGTTGTGTGTCCTCTTCCTCAATGATAATAAAGGTCTATTTGCAAG
40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000098359.4
CDS-3UTR TCA 90 bp CTTGCAAATAGACCTTTATTATCATTGAGGAAGAGGACACACAACCCACTCAGAACAGATTTCAGTGTTTaGCATGGAAAGAACAGGTTG +
Preference number: 4 (lower is better)
Translates to: LANRPLLSLRKRTHNPLRTDFSV*HGKNRL
Trigger: CAACCTGTTCTTTCCATGTCAAACACTGAAATCTGT...TCTGAGTGGGTTGTGTGTCCTCTTCCTCAATGATAATAAAGGTCTATTTGCAAG
40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000098359.4
CDS-3UTR GCA 90 bp CTTGCAAATAGACCTTTATTATCATTGAGGAAGAGGACACACAACCCACTCAGACGGTTAACAAAGAACTaGTTCCATGTCTCTTTGTCA +
Preference number: 4 (lower is better)
Translates to: LANRPLLSLRKRTHNPLRRLTKN*FHVSLS
Trigger: TGACAAAGAGACATGGAAGCAGTTCTTTGTTAACCG...TCTGAGTGGGTTGTGTGTCCTCTTCCTCAATGATAATAAAGGTCTATTTGCAAG
40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000098359.4
CDS-3UTR GCA 90 bp CTTGCAAATAGACCTTTATTATCATTGAGGAAGAGGACACACAACCCACTCAGAGATATAACATGCATATaGCCAAATTCCAGTCTCTGC +
Preference number: 4 (lower is better)
Translates to: LANRPLLSLRKRTHNPLRDITCI*PNSSLC
Trigger: GCAGAGACTGGAATTTGGGCATATGCATGTTATATC...TCTGAGTGGGTTGTGTGTCCTCTTCCTCAATGATAATAAAGGTCTATTTGCAAG
40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000098359.4
CDS-3UTR CCA 90 bp CTTGCAAATAGACCTTTATTATCATTGAGGAAGAGGACACACAACCCACTCAGATGGAAATCTTGGTCATaGAAGTCAACATACAGACAA +
Preference number: 4 (lower is better)
Translates to: LANRPLLSLRKRTHNPLRWKSWS*KSTYRQ
Trigger: TTGTCTGTATGTTGACTTCCATGACCAAGATTTCCA...TCTGAGTGGGTTGTGTGTCCTCTTCCTCAATGATAATAAAGGTCTATTTGCAAG
39% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000098359.4
CDS-3UTR CCA 90 bp CTTGCAAATAGACCTTTATTATCATTGAGGAAGAGGACACACAACCCACTCAGATTTCAGTGTTTGACATaGAAAGAACAGGTTGTTAGT +
Preference number: 4 (lower is better)
Translates to: LANRPLLSLRKRTHNPLRFQCLT*KEQVVS
Trigger: ACTAACAACCTGTTCTTTCCATGTCAAACACTGAAA...TCTGAGTGGGTTGTGTGTCCTCTTCCTCAATGATAATAAAGGTCTATTTGCAAG
38% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000098359.4
CDS TCA 90 bp TTTGCCGTGGAAGCCGTCTTCTGTTTTGCAGCCGATAACACTTACTaGGTTGCTGGCATCTCTCCTCCCATGCGTACACATCCAAAGAGC +
Preference number: 5 (lower is better)
Translates to: FAVEAVFCFAADNTY*VAGISPPMRTHPKS
Trigger: GCTCTTTGGATGTGTACGCATGGGAGGAGAGATGCCAGCAACTCAGTAAGTGTTATCGGCTGCAAAACAGAAGACGGCTTCCACGGCAAA
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000098359.4
CDS CCA 90 bp TGCAATGTGCATCTCAGGGAGGGTATTCAACAGCTTGATAGTAGTTaGCTGTACTGGGCTTACCCAGGTCATAACACCCTCATGAATATC +
Preference number: 5 (lower is better)
Translates to: CNVHLREGIQQLDSS*LYWAYPGHNTLMNI
Trigger: GATATTCATGAGGGTGTTATGACCTGGGTAAGCCCAGTACAGCCAACTACTATCAAGCTGTTGAATACCCTCCCTGAGATGCACATTGCA
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000098359.4
CDS TCA 90 bp GCCAGAGCATCACTGCTATTACAGTCCCACAGTTTGATAGTTGAGTaGATATCTACAGTGACTGCAATGTGCATCTCAGGGAGGGTATTC +
Preference number: 5 (lower is better)
Translates to: ARASLLLQSHSLIVE*ISTVTAMCISGRVF
Trigger: GAATACCCTCCCTGAGATGCACATTGCAGTCACTGTAGATATTCACTCAACTATCAAACTGTGGGACTGTAATAGCAGTGATGCTCTGGC
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000098359.4
CDS TCA 90 bp CAGACAGACACCATATATGCTGAAGAGCAAGAGAGAGGATCCCGTTaGACAAACAATCACGTCCTTATCACTGACTCCAAAGCATTCCAG +
Preference number: 5 (lower is better)
Translates to: QTDTIYAEEQERGSR*TNNHVLITDSKAFQ
Trigger: CTGGAATGCTTTGGAGTCAGTGATAAGGACGTGATTGTTTGTTCAACGGGATCCTCTCTCTTGCTCTTCAGCATATATGGTGTCTGTCTG
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000098359.4
CDS TCA 90 bp CTTCTGAGCAGTAGTCAAATGTCTGCAGACAGACACCATATATGCTaGAGAGCAAGAGAGAGGATCCCGTTGAACAAACAATCACGTCCT +
Preference number: 5 (lower is better)
Translates to: LLSSSQMSADRHHIC*RARERIPLNKQSRP
Trigger: AGGACGTGATTGTTTGTTCAACGGGATCCTCTCTCTTGCTCTTCAGCATATATGGTGTCTGTCTGCAGACATTTGACTACTGCTCAGAAG
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000098359.4
CDS CCA 90 bp CCAAATTCCAGTCTCTGCGCAAATTTCTTTGTAGGTGAAATCTTCTaGCTTTGCCCGGGTCTTGGTGTGTTCTTGATATGTTCGGTTAAC +
Preference number: 5 (lower is better)
Translates to: PNSSLCANFFVGEIF*LCPGLGVFLICSVN
Trigger: GTTAACCGAACATATCAAGAACACACCAAGACCCGGGCAAAGCCAGAAGATTTCACCTACAAAGAAATTTGCGCAGAGACTGGAATTTGG
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000098359.4
CDS-3UTR CAA 90 bp CTTGCAAATAGACCTTTATTATCATTGAGGAAGAGGACACACAACCCACTCAGATCCGGTCTTCCTTTCTaGGGGTCCAGAAGGCTTTAT +
Preference number: 5 (lower is better)
Translates to: LANRPLLSLRKRTHNPLRSGLPF*GSRRLY
Trigger: ATAAAGCCTTCTGGACCCCAAGAAAGGAAGACCGGA...TCTGAGTGGGTTGTGTGTCCTCTTCCTCAATGATAATAAAGGTCTATTTGCAAG
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000098359.4
CDS TCA 90 bp ACCAAGACAATAGCAGCATCCTTGGTAAAGACAGATTTCAGTGTTTaGCATGGAAAGAACAGGTTGTTAGTCGCCAGAGCATCACTGCTA +
Preference number: 5 (lower is better)
Translates to: TKTIAASLVKTDFSV*HGKNRLLVARASLL
Trigger: TAGCAGTGATGCTCTGGCGACTAACAACCTGTTCTTTCCATGTCAAACACTGAAATCTGTCTTTACCAAGGATGCTGCTATTGTCTTGGT
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000098359.4
CDS-3UTR CAA 90 bp CTTGCAAATAGACCTTTATTATCATTGAGGAAGAGGACACACAACCCACTCAGACATGGAAAGAACAGGTaGTTAGTCGCCAGAGCATCA +
Preference number: 5 (lower is better)
Translates to: LANRPLLSLRKRTHNPLRHGKNR*LVARAS
Trigger: TGATGCTCTGGCGACTAACAACCTGTTCTTTCCATG...TCTGAGTGGGTTGTGTGTCCTCTTCCTCAATGATAATAAAGGTCTATTTGCAAG
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000098359.4
CDS-3UTR CAA 90 bp CTTGCAAATAGACCTTTATTATCATTGAGGAAGAGGACACACAACCCACTCAGAATAACACTTACTGAGTaGCTGGCATCTCTCCTCCCA +
Preference number: 5 (lower is better)
Translates to: LANRPLLSLRKRTHNPLRITLTE*LASLLP
Trigger: TGGGAGGAGAGATGCCAGCAACTCAGTAAGTGTTAT...TCTGAGTGGGTTGTGTGTCCTCTTCCTCAATGATAATAAAGGTCTATTTGCAAG
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000098359.4
CDS CCA 90 bp GACAATAGCAGCATCCTTGGTAAAGACAGATTTCAGTGTTTGACATaGAAAGAACAGGTTGTTAGTCGCCAGAGCATCACTGCTATTACA +
Preference number: 5 (lower is better)
Translates to: DNSSILGKDRFQCLT*KEQVVSRQSITAIT
Trigger: TGTAATAGCAGTGATGCTCTGGCGACTAACAACCTGTTCTTTCCATGTCAAACACTGAAATCTGTCTTTACCAAGGATGCTGCTATTGTC
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000098359.4
CDS-3UTR CAA 90 bp CTTGCAAATAGACCTTTATTATCATTGAGGAAGAGGACACACAACCCACTCAGATCCCAGGTGGAAATCTaGGTCATGGAAGTCAACATA +
Preference number: 5 (lower is better)
Translates to: LANRPLLSLRKRTHNPLRSQVEI*VMEVNI
Trigger: TATGTTGACTTCCATGACCAAGATTTCCACCTGGGA...TCTGAGTGGGTTGTGTGTCCTCTTCCTCAATGATAATAAAGGTCTATTTGCAAG
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000098359.4
CDS-3UTR CAA 90 bp CTTGCAAATAGACCTTTATTATCATTGAGGAAGAGGACACACAACCCACTCAGACCGTATGGGAATACATaGATTGTGGAAATGAGGTGT +
Preference number: 5 (lower is better)
Translates to: LANRPLLSLRKRTHNPLRPYGNT*IVEMRC
Trigger: ACACCTCATTTCCACAATCAATGTATTCCCATACGG...TCTGAGTGGGTTGTGTGTCCTCTTCCTCAATGATAATAAAGGTCTATTTGCAAG
41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000098359.4
CDS-3UTR CAA 90 bp CTTGCAAATAGACCTTTATTATCATTGAGGAAGAGGACACACAACCCACTCAGAGACAGATTTCAGTGTTaGACATGGAAAGAACAGGTT +
Preference number: 5 (lower is better)
Translates to: LANRPLLSLRKRTHNPLRDRFQC*TWKEQV
Trigger: AACCTGTTCTTTCCATGTCAAACACTGAAATCTGTC...TCTGAGTGGGTTGTGTGTCCTCTTCCTCAATGATAATAAAGGTCTATTTGCAAG
40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000098359.4
CDS-3UTR CAA 90 bp CTTGCAAATAGACCTTTATTATCATTGAGGAAGAGGACACACAACCCACTCAGATCACATAATGAAAAATaGAGAACGGTAGACACAGGG +
Preference number: 5 (lower is better)
Translates to: LANRPLLSLRKRTHNPLRSHNEK*RTVDTG
Trigger: CCCTGTGTCTACCGTTCTCAATTTTTCATTATGTGA...TCTGAGTGGGTTGTGTGTCCTCTTCCTCAATGATAATAAAGGTCTATTTGCAAG
40% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000098359.4
CDS CCA 90 bp TCTGTCAACGAGAAGCTGGCTATCAAATATCCTGTAACAATTATTTaGTTCCCGATCTCTTCCAGCTTCATATCAAATGTGACAAACTTT +
Preference number: 5 (lower is better)
Translates to: SVNEKLAIKYPVTII*FPISSSFISNVTNF
Trigger: AAAGTTTGTCACATTTGATATGAAGCTGGAAGAGATCGGGAACCAAATAATTGTTACAGGATATTTGATAGCCAGCTTCTCGTTGACAGA
38% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000098359.4
CDS CAA 90 bp CCGTGGAAGCCGTCTTCTGTTTTGCAGCCGATAACACTTACTGAGTaGCTGGCATCTCTCCTCCCATGCGTACACATCCAAAGAGCCATC +
Preference number: 6 (lower is better)
Translates to: PWKPSSVLQPITLTE*LASLLPCVHIQRAI
Trigger: GATGGCTCTTTGGATGTGTACGCATGGGAGGAGAGATGCCAGCAACTCAGTAAGTGTTATCGGCTGCAAAACAGAAGACGGCTTCCACGG
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000098359.4
CDS TCA 72 bp GGCTGTACTGGGCTTACCCAGGTCATAACACCCTCATaGATATCCCAGGTGGAAATCTTGGTCATGGAAGTC +
Preference number: 6 (lower is better)
Translates to: GCTGLTQVITPS*ISQVEILVMEV
Trigger: GACTTCCATGACCAAGATTTCCACCTGGGATATTCATGAGGGTGTTATGACCTGGGTAAGCCCAGTACAGCC
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000098359.4
CDS CCA 72 bp CATCTCAGGGAGGGTATTCAACAGCTTGATAGTAGTTaGCTGTACTGGGCTTACCCAGGTCATAACACCCTC +
Preference number: 6 (lower is better)
Translates to: HLREGIQQLDSS*LYWAYPGHNTL
Trigger: GAGGGTGTTATGACCTGGGTAAGCCCAGTACAGCCAACTACTATCAAGCTGTTGAATACCCTCCCTGAGATG
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000098359.4
CDS CAA 72 bp ACTGCAATGTGCATCTCAGGGAGGGTATTCAACAGCTaGATAGTAGTTGGCTGTACTGGGCTTACCCAGGTC +
Preference number: 6 (lower is better)
Translates to: TAMCISGRVFNS*IVVGCTGLTQV
Trigger: GACCTGGGTAAGCCCAGTACAGCCAACTACTATCAAGCTGTTGAATACCCTCCCTGAGATGCACATTGCAGT
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000098359.4
CDS CAA 72 bp CCGTCTTCTGTTTTGCAGCCGATAACACTTACTGAGTaGCTGGCATCTCTCCTCCCATGCGTACACATCCAA +
Preference number: 6 (lower is better)
Translates to: PSSVLQPITLTE*LASLLPCVHIQ
Trigger: TTGGATGTGTACGCATGGGAGGAGAGATGCCAGCAACTCAGTAAGTGTTATCGGCTGCAAAACAGAAGACGG
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000098359.4
CDS CAA 90 bp TCTACAGTGACTGCAATGTGCATCTCAGGGAGGGTATTCAACAGCTaGATAGTAGTTGGCTGTACTGGGCTTACCCAGGTCATAACACCC +
Preference number: 6 (lower is better)
Translates to: STVTAMCISGRVFNS*IVVGCTGLTQVITP
Trigger: GGGTGTTATGACCTGGGTAAGCCCAGTACAGCCAACTACTATCAAGCTGTTGAATACCCTCCCTGAGATGCACATTGCAGTCACTGTAGA
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000098359.4
CDS TCA 72 bp ACTGCTTCCATGTCTCTTTGTCATGGAGCTGTAGGATaGCCGTGTCACAGTAGAGCCATCTCTTCTGACACA +
Preference number: 6 (lower is better)
Translates to: TASMSLCHGAVG*PCHSRAISSDT
Trigger: TGTGTCAGAAGAGATGGCTCTACTGTGACACGGTCATCCTACAGCTCCATGACAAAGAGACATGGAAGCAGT
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000098359.4
CDS TCA 72 bp CCCAAATTCCAGTCTCTGCGCAAATTTCTTTGTAGGTaGAATCTTCTGGCTTTGCCCGGGTCTTGGTGTGTT +
Preference number: 6 (lower is better)
Translates to: PKFQSLRKFLCR*NLLALPGSWCV
Trigger: AACACACCAAGACCCGGGCAAAGCCAGAAGATTTCACCTACAAAGAAATTTGCGCAGAGACTGGAATTTGGG
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000098359.4
CDS CCA 72 bp AGTCTCTGCGCAAATTTCTTTGTAGGTGAAATCTTCTaGCTTTGCCCGGGTCTTGGTGTGTTCTTGATATGT +
Preference number: 6 (lower is better)
Translates to: SLCANFFVGEIF*LCPGLGVFLIC
Trigger: ACATATCAAGAACACACCAAGACCCGGGCAAAGCCAGAAGATTTCACCTACAAAGAAATTTGCGCAGAGACT
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000098359.4
CDS CAA 72 bp TCAACATACAGACAACCGATGTCCCTTGTCCATTCCTaGTTAAGCCACGCCCTGAGATATAACATGCATATG +
Preference number: 6 (lower is better)
Translates to: STYRQPMSLVHS*LSHALRYNMHM
Trigger: CATATGCATGTTATATCTCAGGGCGTGGCTTAACAAGGAATGGACAAGGGACATCGGTTGTCTGTATGTTGA
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000098359.4
CDS CAA 90 bp TACCAAGACAATAGCAGCATCCTTGGTAAAGACAGATTTCAGTGTTaGACATGGAAAGAACAGGTTGTTAGTCGCCAGAGCATCACTGCT +
Preference number: 6 (lower is better)
Translates to: YQDNSSILGKDRFQC*TWKEQVVSRQSITA
Trigger: AGCAGTGATGCTCTGGCGACTAACAACCTGTTCTTTCCATGTCAAACACTGAAATCTGTCTTTACCAAGGATGCTGCTATTGTCTTGGTA
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000098359.4
CDS TCA 72 bp ACCATATATGCTGAAGAGCAAGAGAGAGGATCCCGTTaGACAAACAATCACGTCCTTATCACTGACTCCAAA +
Preference number: 6 (lower is better)
Translates to: TIYAEEQERGSR*TNNHVLITDSK
Trigger: TTTGGAGTCAGTGATAAGGACGTGATTGTTTGTTCAACGGGATCCTCTCTCTTGCTCTTCAGCATATATGGT
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000098359.4
CDS TCA 72 bp ACATCCAAAGAGCCATCGATAAAAGTGACAATGACATaGAAGGGGTCCACCCATAGTCTCAAGATCTCTTCT +
Preference number: 6 (lower is better)
Translates to: TSKEPSIKVTMT*KGSTHSLKISS
Trigger: AGAAGAGATCTTGAGACTATGGGTGGACCCCTTTCATGTCATTGTCACTTTTATCGATGGCTCTTTGGATGT
43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000098359.4
CDS CAA 72 bp AATAGCAGCATCCTTGGTAAAGACAGATTTCAGTGTTaGACATGGAAAGAACAGGTTGTTAGTCGCCAGAGC +
Preference number: 6 (lower is better)
Translates to: NSSILGKDRFQC*TWKEQVVSRQS
Trigger: GCTCTGGCGACTAACAACCTGTTCTTTCCATGTCAAACACTGAAATCTGTCTTTACCAAGGATGCTGCTATT
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000098359.4
CDS CAA 72 bp CACTTATGGACATCAGGGTTATCCGGTCTTCCTTTCTaGGGGTCCAGAAGGCTTTATCACATAATGAAAAAT +
Preference number: 6 (lower is better)
Translates to: HLWTSGLSGLPF*GSRRLYHIMKN
Trigger: ATTTTTCATTATGTGATAAAGCCTTCTGGACCCCAAGAAAGGAAGACCGGATAACCCTGATGTCCATAAGTG
42% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000098359.4
CDS CAA 90 bp CAGAGAATTCTGATCTCCTCAGTAAGCTGTTCATGTAAAACACCTTaGGCAAGATATGTGGGTGTTTCCTACTCAGAAAGACCCATTTCT +
Preference number: 6 (lower is better)
Translates to: QRILISSVSCSCKTP*ARYVGVSYSERPIS
Trigger: AGAAATGGGTCTTTCTGAGTAGGAAACACCCACATATCTTGCCAAAGGTGTTTTACATGAACAGCTTACTGAGGAGATCAGAATTCTCTG
41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000098359.4
CDS CAA 90 bp GTCTGTCAACGAGAAGCTGGCTATCAAATATCCTGTAACAATTATTaGGTTCCCGATCTCTTCCAGCTTCATATCAAATGTGACAAACTT +
Preference number: 6 (lower is better)
Translates to: VCQREAGYQISCNNY*VPDLFQLHIKCDKL
Trigger: AAGTTTGTCACATTTGATATGAAGCTGGAAGAGATCGGGAACCAAATAATTGTTACAGGATATTTGATAGCCAGCTTCTCGTTGACAGAC
39% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000098359.4
CDS CCA 72 bp GAGAAGCTGGCTATCAAATATCCTGTAACAATTATTTaGTTCCCGATCTCTTCCAGCTTCATATCAAATGTG +
Preference number: 6 (lower is better)
Translates to: EKLAIKYPVTII*FPISSSFISNV
Trigger: CACATTTGATATGAAGCTGGAAGAGATCGGGAACCAAATAATTGTTACAGGATATTTGATAGCCAGCTTCTC
39% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000098359.4
CDS CAA 72 bp CGAGAAGCTGGCTATCAAATATCCTGTAACAATTATTaGGTTCCCGATCTCTTCCAGCTTCATATCAAATGT +
Preference number: 6 (lower is better)
Translates to: REAGYQISCNNY*VPDLFQLHIKC
Trigger: ACATTTGATATGAAGCTGGAAGAGATCGGGAACCAAATAATTGTTACAGGATATTTGATAGCCAGCTTCTCG
39% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000098359.4