RADAR | Search for sensor designs | Human genes | Mouse genes | Code

Pregenerated sensors for FBXW16 (Mus musculus)

Ensembl gene IDs: ENSMUSG00000074062

Ensembl transcript IDs: ENSMUST00000084984.8

Found 68 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).

Type Sensor Details
CDS-3UTR GCA 90 bp TTGAGGAAGATGACACACAACACACCCAGTTTTCAAGAGCACATTTCAGGAGTATGCGGGTCTTGGGGGTaGATTTCTGGCCATCAAGGT +
Preference number: 4 (lower is better)
Translates to: LRKMTHNTPSFQEHISGVCGSWG*ISGHQG
Trigger: ACCTTGATGGCCAGAAATGCACCCCCAAGACCCGCA...TACTCCTGAAATGTGCTCTTGAAAACTGGGTGTGTTGTGTGTCATCTTCCTCAA
48% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000084984.8
CDS-3UTR GCA 90 bp GAGGAAGATGACACACAACACACCCAGTTTTCAAGAGCACATTTCAGGAGTAGTGACTCCCATCCACTCTaGACGCTCCTTGTAGTCTTG +
Preference number: 4 (lower is better)
Translates to: EEDDTQHTQFSRAHFRSSDSHPL*TLLVVL
Trigger: CAAGACTACAAGGAGCGTGCAGAGTGGATGGGAGTC...ACTACTCCTGAAATGTGCTCTTGAAAACTGGGTGTGTTGTGTGTCATCTTCCTC
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000084984.8
CDS-3UTR CCA 90 bp TTGAGGAAGATGACACACAACACACCCAGTTTTCAAGAGCACATTTCAGGAGTACCTGTCTTCCCTTCTTaGGGTCCAGAAGACTCCTTG +
Preference number: 4 (lower is better)
Translates to: LRKMTHNTPSFQEHISGVPVFPS*GPEDSL
Trigger: CAAGGAGTCTTCTGGACCCCAAGAAGGGAAGACAGG...TACTCCTGAAATGTGCTCTTGAAAACTGGGTGTGTTGTGTGTCATCTTCCTCAA
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000084984.8
CDS-3UTR TCA 90 bp ATCATTGAGGAAGATGACACACAACACACCCAGTTTTCAAGAGCACATTTCAGGCAGGTGACAATGACATaGACAGGGTCCACCCATAGT +
Preference number: 4 (lower is better)
Translates to: IIEEDDTQHTQFSRAHFRQVTMT*TGSTHS
Trigger: ACTATGGGTGGACCCTGTTCATGTCATTGTCACCTG...CCTGAAATGTGCTCTTGAAAACTGGGTGTGTTGTGTGTCATCTTCCTCAATGAT
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000084984.8
CDS-3UTR TCA 90 bp TTATTATCATTGAGGAAGATGACACACAACACACCCAGTTTTCAAGAGCACATTCATGGAGCTGTAGGGTaGCCATGTCACAGTAGAGCC +
Preference number: 4 (lower is better)
Translates to: LLSLRKMTHNTPSFQEHIHGAVG*PCHSRA
Trigger: GGCTCTACTGTGACATGGTCACCCTACAGCTCCATG...AATGTGCTCTTGAAAACTGGGTGTGTTGTGTGTCATCTTCCTCAATGATAATAA
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000084984.8
CDS-3UTR TCA 90 bp ATTGAGGAAGATGACACACAACACACCCAGTTTTCAAGAGCACATTTCAGGAGTAGCTTATATCTACAGTaGCCGCAATGTGCATCTCAG +
Preference number: 4 (lower is better)
Translates to: IEEDDTQHTQFSRAHFRSSLYLQ*PQCASQ
Trigger: CTGAGATGCACATTGCGGTCACTGTAGATATAAGCT...ACTCCTGAAATGTGCTCTTGAAAACTGGGTGTGTTGTGTGTCATCTTCCTCAAT
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000084984.8
CDS-3UTR TCA 90 bp TTGAGGAAGATGACACACAACACACCCAGTTTTCAAGAGCACATTTCAGGAGTAACAGCTTTCAGTATTTaGCAGGGAGAGAATATGCTC +
Preference number: 4 (lower is better)
Translates to: LRKMTHNTPSFQEHISGVTAFSI*QGENML
Trigger: GAGCATATTCTCTCCCTGTCAAATACTGAAAGCTGT...TACTCCTGAAATGTGCTCTTGAAAACTGGGTGTGTTGTGTGTCATCTTCCTCAA
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000084984.8
CDS-3UTR GCA 90 bp GAGGAAGATGACACACAACACACCCAGTTTTCAAGAGCACATTTCAGGAGTAGTGCTTCATATCAAATGTaGCAAATTTTGCGGGTCTTG +
Preference number: 4 (lower is better)
Translates to: EEDDTQHTQFSRAHFRSSASYQM*QILRVL
Trigger: CAAGACCCGCAAAATTTGGCACATTTGATATGAAGC...ACTACTCCTGAAATGTGCTCTTGAAAACTGGGTGTGTTGTGTGTCATCTTCCTC
42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000084984.8
CDS-3UTR CCA 90 bp TTATCATTGAGGAAGATGACACACAACACACCCAGTTTTCAAGAGCACATTTCACATGTCTTTTTGCCATaGAGCTGTAGGGTGACCATG +
Preference number: 4 (lower is better)
Translates to: LSLRKMTHNTPSFQEHISHVFLP*SCRVTM
Trigger: CATGGTCACCCTACAGCTCCATGGCAAAAAGACATG...TGAAATGTGCTCTTGAAAACTGGGTGTGTTGTGTGTCATCTTCCTCAATGATAA
42% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000084984.8
CDS-3UTR TCA 90 bp ATTATCATTGAGGAAGATGACACACAACACACCCAGTTTTCAAGAGCACATTTCCATTGTGTCTGGAAATaGGGTGTAAGTCAGGAATCC +
Preference number: 4 (lower is better)
Translates to: IIIEEDDTQHTQFSRAHFHCVWK*GVSQES
Trigger: GGATTCCTGACTTACACCTCATTTCCAGACACAATG...GAAATGTGCTCTTGAAAACTGGGTGTGTTGTGTGTCATCTTCCTCAATGATAAT
41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000084984.8
CDS-3UTR CCA 90 bp TTATTATCATTGAGGAAGATGACACACAACACACCCAGTTTTCAAGAGCACATTATAGGATTCCTGTACTaGGCTTTCCCAGGTCATAGC +
Preference number: 4 (lower is better)
Translates to: LLSLRKMTHNTPSFQEHIIGFLY*AFPGHS
Trigger: GCTATGACCTGGGAAAGCCCAGTACAGGAATCCTAT...AATGTGCTCTTGAAAACTGGGTGTGTTGTGTGTCATCTTCCTCAATGATAATAA
41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000084984.8
CDS-3UTR CCA 90 bp ATTGAGGAAGATGACACACAACACACCCAGTTTTCAAGAGCACATTTCAGGAGTTCTAAAGATCTGTTCTaGGCAGTACTGAAATGTCTG +
Preference number: 4 (lower is better)
Translates to: IEEDDTQHTQFSRAHFRSSKDLF*AVLKCL
Trigger: CAGACATTTCAGTACTGCCCAGAACAGATCTTTAGA...ACTCCTGAAATGTGCTCTTGAAAACTGGGTGTGTTGTGTGTCATCTTCCTCAAT
41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000084984.8
CDS-3UTR GCA 90 bp ATTATCATTGAGGAAGATGACACACAACACACCCAGTTTTCAAGAGCACATTTCATGTCCTCAGTAAGCTaGTCATGTAAACCACCTTTG +
Preference number: 4 (lower is better)
Translates to: IIIEEDDTQHTQFSRAHFMSSVS*SCKPPL
Trigger: CAAAGGTGGTTTACATGAGCAGCTTACTGAGGACAT...GAAATGTGCTCTTGAAAACTGGGTGTGTTGTGTGTCATCTTCCTCAATGATAAT
40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000084984.8
CDS-3UTR GCA 90 bp TTGAGGAAGATGACACACAACACACCCAGTTTTCAAGAGCACATTTCAGGAGTATTGCAAAGAGAAACTTaGTACCAAATGTCCTTGAAC +
Preference number: 4 (lower is better)
Translates to: LRKMTHNTPSFQEHISGVLQRET*YQMSLN
Trigger: GTTCAAGGACATTTGGTAGCAAGTTTCTCTTTGCAA...TACTCCTGAAATGTGCTCTTGAAAACTGGGTGTGTTGTGTGTCATCTTCCTCAA
40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000084984.8
CDS-3UTR TCA 90 bp TTATTATCATTGAGGAAGATGACACACAACACACCCAGTTTTCAAGAGCACATTGAATTTCCTTGTAAGTaGAATCTTCTGGCTTTGCCC +
Preference number: 4 (lower is better)
Translates to: LLSLRKMTHNTPSFQEHIEFPCK*NLLALP
Trigger: GGGCAAAGCCAGAAGATTTCACTTACAAGGAAATTC...AATGTGCTCTTGAAAACTGGGTGTGTTGTGTGTCATCTTCCTCAATGATAATAA
39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000084984.8
CDS-3UTR CCA 90 bp TTATTATCATTGAGGAAGATGACACACAACACACCCAGTTTTCAAGAGCACATTGTCCAGAAGACTCCTTaGCATAATGGAAATTTGAGA +
Preference number: 4 (lower is better)
Translates to: LLSLRKMTHNTPSFQEHIVQKTP*HNGNLR
Trigger: TCTCAAATTTCCATTATGCCAAGGAGTCTTCTGGAC...AATGTGCTCTTGAAAACTGGGTGTGTTGTGTGTCATCTTCCTCAATGATAATAA
38% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000084984.8
CDS-3UTR CCA 90 bp TTATTATCATTGAGGAAGATGACACACAACACACCCAGTTTTCAAGAGCACATTCTTTGTCAAGACTTGTaGGTTTCTTATAATCAGCAA +
Preference number: 4 (lower is better)
Translates to: LLSLRKMTHNTPSFQEHILCQDL*VSYNQQ
Trigger: TTGCTGATTATAAGAAACCCACAAGTCTTGACAAAG...AATGTGCTCTTGAAAACTGGGTGTGTTGTGTGTCATCTTCCTCAATGATAATAA
36% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000084984.8
CDS GCA 90 bp AGTAGAGCCATCTCTTCTGACACAACTTCCTCCACAGGACATCACTaGTGGCAAGTGCATTCCAGTTCTTGTTCACTTGGGCAACCTGTA +
Preference number: 5 (lower is better)
Translates to: SRAISSDTTSSTGHH*WQVHSSSCSLGQPV
Trigger: TACAGGTTGCCCAAGTGAACAAGAACTGGAATGCACTTGCCAGCAGTGATGTCCTGTGGAGGAAGTTGTGTCAGAAGAGATGGCTCTACT
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000084984.8
CDS-3UTR CAA 90 bp AGGAAGATGACACACAACACACCCAGTTTTCAAGAGCACATTTCAGGAGTAGTGTCCTGTCTTCCCTTCTaGGGGTCCAGAAGACTCCTT +
Preference number: 5 (lower is better)
Translates to: RKMTHNTPSFQEHISGVVSCLPF*GSRRLL
Trigger: AAGGAGTCTTCTGGACCCCAAGAAGGGAAGACAGGA...CACTACTCCTGAAATGTGCTCTTGAAAACTGGGTGTGTTGTGTGTCATCTTCCT
48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000084984.8
CDS TCA 90 bp AAAAGAAGAACTGCTTCCATGTCTTTTTGCCATGGAGCTGTAGGGTaGCCATGTCACAGTAGAGCCATCTCTTCTGACACAACTTCCTCC +
Preference number: 5 (lower is better)
Translates to: KRRTASMSFCHGAVG*PCHSRAISSDTTSS
Trigger: GGAGGAAGTTGTGTCAGAAGAGATGGCTCTACTGTGACATGGTCACCCTACAGCTCCATGGCAAAAAGACATGGAAGCAGTTCTTCTTTT
47% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000084984.8
CDS-3UTR CAA 90 bp TCATTGAGGAAGATGACACACAACACACCCAGTTTTCAAGAGCACATTTCAGGATGCTTCCATGTCTTTTaGCCATGGAGCTGTAGGGTG +
Preference number: 5 (lower is better)
Translates to: SLRKMTHNTPSFQEHISGCFHVF*PWSCRV
Trigger: CACCCTACAGCTCCATGGCAAAAAGACATGGAAGCA...TCCTGAAATGTGCTCTTGAAAACTGGGTGTGTTGTGTGTCATCTTCCTCAATGA
46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000084984.8
CDS TCA 90 bp ATGCATAAGCCCGAAATTCAAACTCCACAGGAATTTCCTTGTAAGTaGAATCTTCTGGCTTTGCCCGGGATTTGGCATGTTCTTGCCATG +
Preference number: 5 (lower is better)
Translates to: MHKPEIQTPQEFPCK*NLLALPGIWHVLAM
Trigger: CATGGCAAGAACATGCCAAATCCCGGGCAAAGCCAGAAGATTTCACTTACAAGGAAATTCCTGTGGAGTTTGAATTTCGGGCTTATGCAT
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000084984.8
CDS TCA 90 bp ACCAAGACAATTGGGCCATCCTTTGTAAACACAGCTTTCAGTATTTaGCAGGGAGAGAATATGCTCTTAGTTGCCAGAGCATCCCTGTTG +
Preference number: 5 (lower is better)
Translates to: TKTIGPSFVNTAFSI*QGENMLLVARASLL
Trigger: CAACAGGGATGCTCTGGCAACTAAGAGCATATTCTCTCCCTGTCAAATACTGAAAGCTGTGTTTACAAAGGATGGCCCAATTGTCTTGGT
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000084984.8
CDS CCA 90 bp CCTAAAGATGTAGAGGTTTCCCGAGGTATCACCTACCAAGACAATTaGGCCATCCTTTGTAAACACAGCTTTCAGTATTTGACAGGGAGA +
Preference number: 5 (lower is better)
Translates to: PKDVEVSRGITYQDN*AILCKHSFQYLTGR
Trigger: TCTCCCTGTCAAATACTGAAAGCTGTGTTTACAAAGGATGGCCCAATTGTCTTGGTAGGTGATACCTCGGGAAACCTCTACATCTTTAGG
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000084984.8
CDS CCA 90 bp ATCAAGGTTATCCTGTCTTCCCTTCTTGGGGTCCAGAAGACTCCTTaGCATAATGGAAATTTGAGACTGGTAGACACTGGATCAGAAAAT +
Preference number: 5 (lower is better)
Translates to: IKVILSSLLGVQKTP*HNGNLRLVDTGSEN
Trigger: ATTTTCTGATCCAGTGTCTACCAGTCTCAAATTTCCATTATGCCAAGGAGTCTTCTGGACCCCAAGAAGGGAAGACAGGATAACCTTGAT
43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000084984.8
CDS-3UTR CAA 90 bp TTGAGGAAGATGACACACAACACACCCAGTTTTCAAGAGCACATTTCAGGAGTAACGCTCCTTGTAGTCTaGCAAAGAGAAACTTGCTAC +
Preference number: 5 (lower is better)
Translates to: LRKMTHNTPSFQEHISGVTLLVV*QRETCY
Trigger: GTAGCAAGTTTCTCTTTGCAAGACTACAAGGAGCGT...TACTCCTGAAATGTGCTCTTGAAAACTGGGTGTGTTGTGTGTCATCTTCCTCAA
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000084984.8
CDS-3UTR CAA 90 bp TTGAGGAAGATGACACACAACACACCCAGTTTTCAAGAGCACATTTCAGGAGTAAGAGAGAGGATCCAGTaGAACAAACAATCGTGTCCT +
Preference number: 5 (lower is better)
Translates to: LRKMTHNTPSFQEHISGVRERIQ*NKQSCP
Trigger: AGGACACGATTGTTTGTTCAACTGGATCCTCTCTCT...TACTCCTGAAATGTGCTCTTGAAAACTGGGTGTGTTGTGTGTCATCTTCCTCAA
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000084984.8
CDS CCA 90 bp CCGAAATTCAAACTCCACAGGAATTTCCTTGTAAGTGAAATCTTCTaGCTTTGCCCGGGATTTGGCATGTTCTTGCCATGTTCTGTAAAA +
Preference number: 5 (lower is better)
Translates to: PKFKLHRNFLVSEIF*LCPGFGMFLPCSVK
Trigger: TTTTACAGAACATGGCAAGAACATGCCAAATCCCGGGCAAAGCCAGAAGATTTCACTTACAAGGAAATTCCTGTGGAGTTTGAATTTCGG
42% GC, longest homopolymer 4 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000084984.8
CDS-3UTR CAA 90 bp AGGAAGATGACACACAACACACCCAGTTTTCAAGAGCACATTTCAGGAGTAGTGGGATTTGGCATGTTCTaGCCATGTTCTGTAAAAGAA +
Preference number: 5 (lower is better)
Translates to: RKMTHNTPSFQEHISGVVGFGMF*PCSVKE
Trigger: TTCTTTTACAGAACATGGCAAGAACATGCCAAATCC...CACTACTCCTGAAATGTGCTCTTGAAAACTGGGTGTGTTGTGTGTCATCTTCCT
42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000084984.8
CDS-3UTR CAA 90 bp ATTGAGGAAGATGACACACAACACACCCAGTTTTCAAGAGCACATTTCAGGAGTCACAGCTTTCAGTATTaGACAGGGAGAGAATATGCT +
Preference number: 5 (lower is better)
Translates to: IEEDDTQHTQFSRAHFRSHSFQY*TGREYA
Trigger: AGCATATTCTCTCCCTGTCAAATACTGAAAGCTGTG...ACTCCTGAAATGTGCTCTTGAAAACTGGGTGTGTTGTGTGTCATCTTCCTCAAT
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000084984.8
CDS-3UTR CAA 90 bp TCATTGAGGAAGATGACACACAACACACCCAGTTTTCAAGAGCACATTTCAGGATGGCATAATGGAAATTaGAGACTGGTAGACACTGGA +
Preference number: 5 (lower is better)
Translates to: SLRKMTHNTPSFQEHISGWHNGN*RLVDTG
Trigger: TCCAGTGTCTACCAGTCTCAAATTTCCATTATGCCA...TCCTGAAATGTGCTCTTGAAAACTGGGTGTGTTGTGTGTCATCTTCCTCAATGA
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000084984.8
CDS TCA 90 bp GTCAAGACTTGTGGGTTTCTTATAATCAGCAAGACCCATTTATTCTaGGGAGAGCAGTGGAGTTCATCAATAGCGTATGGGAATACATTG +
Preference number: 5 (lower is better)
Translates to: VKTCGFLIISKTHLF*GEQWSSSIAYGNTL
Trigger: CAATGTATTCCCATACGCTATTGATGAACTCCACTGCTCTCCTCAGAATAAATGGGTCTTGCTGATTATAAGAAACCCACAAGTCTTGAC
41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000084984.8
CDS GCA 90 bp TTCAAACTCCACAGGAATTTCCTTGTAAGTGAAATCTTCTGGCTTTaGCCGGGATTTGGCATGTTCTTGCCATGTTCTGTAAAAGAAGAA +
Preference number: 5 (lower is better)
Translates to: FKLHRNFLVSEIFWL*PGFGMFLPCSVKEE
Trigger: TTCTTCTTTTACAGAACATGGCAAGAACATGCCAAATCCCGGGCAAAGCCAGAAGATTTCACTTACAAGGAAATTCCTGTGGAGTTTGAA
41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000084984.8
CDS-3UTR CAA 90 bp TTATCATTGAGGAAGATGACACACAACACACCCAGTTTTCAAGAGCACATTTCAGCGTATGGGAATACATaGTGTCTGGAAATGAGGTGT +
Preference number: 5 (lower is better)
Translates to: LSLRKMTHNTPSFQEHISAYGNT*CLEMRC
Trigger: ACACCTCATTTCCAGACACAATGTATTCCCATACGC...TGAAATGTGCTCTTGAAAACTGGGTGTGTTGTGTGTCATCTTCCTCAATGATAA
41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000084984.8
CDS-3UTR CAA 90 bp ATTATCATTGAGGAAGATGACACACAACACACCCAGTTTTCAAGAGCACATTTCTCATCACATAGTGCATaGTTAATGAAGCTGGACGGT +
Preference number: 5 (lower is better)
Translates to: IIIEEDDTQHTQFSRAHFSSHSA*LMKLDG
Trigger: ACCGTCCAGCTTCATTAACAATGCACTATGTGATGA...GAAATGTGCTCTTGAAAACTGGGTGTGTTGTGTGTCATCTTCCTCAATGATAAT
40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000084984.8
CDS-3UTR CAA 90 bp TTATTATCATTGAGGAAGATGACACACAACACACCCAGTTTTCAAGAGCACATTTGCTACCAAATGTCCTaGAACAGTTACTTTGTTCCC +
Preference number: 5 (lower is better)
Translates to: LLSLRKMTHNTPSFQEHICYQMS*NSYFVP
Trigger: GGGAACAAAGTAACTGTTCAAGGACATTTGGTAGCA...AATGTGCTCTTGAAAACTGGGTGTGTTGTGTGTCATCTTCCTCAATGATAATAA
39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000084984.8
CDS-3UTR CAA 90 bp ATTATCATTGAGGAAGATGACACACAACACACCCAGTTTTCAAGAGCACATTTCCAGATATCTCCTATTTaGCAGTCGATAACACTTCCT +
Preference number: 5 (lower is better)
Translates to: IIIEEDDTQHTQFSRAHFQISPI*QSITLP
Trigger: AGGAAGTGTTATCGACTGCAAAATAGGAGATATCTG...GAAATGTGCTCTTGAAAACTGGGTGTGTTGTGTGTCATCTTCCTCAATGATAAT
39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000084984.8
CDS-3UTR CAA 90 bp TTATTATCATTGAGGAAGATGACACACAACACACCCAGTTTTCAAGAGCACATTCTTGCAAAGAGAAACTaGCTACCAAATGTCCTTGAA +
Preference number: 5 (lower is better)
Translates to: LLSLRKMTHNTPSFQEHILAKRN*LPNVLE
Trigger: TTCAAGGACATTTGGTAGCAAGTTTCTCTTTGCAAG...AATGTGCTCTTGAAAACTGGGTGTGTTGTGTGTCATCTTCCTCAATGATAATAA
38% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000084984.8
CDS TCA 72 bp TCCTGTACTGGGCTTTCCCAGGTCATAGCACCCTCGTaGATATCCCAGGTAGAAATCCTGTTCGTGGAAGTC +
Preference number: 6 (lower is better)
Translates to: SCTGLSQVIAPS*ISQVEILFVEV
Trigger: GACTTCCACGAACAGGATTTCTACCTGGGATATTCACGAGGGTGCTATGACCTGGGAAAGCCCAGTACAGGA
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000084984.8
CDS CCA 72 bp ATGTGCCAAATTTTGCGGGTCTTGGGGGTGCATTTCTaGCCATCAAGGTTATCCTGTCTTCCCTTCTTGGGG +
Preference number: 6 (lower is better)
Translates to: MCQILRVLGVHF*PSRLSCLPFLG
Trigger: CCCCAAGAAGGGAAGACAGGATAACCTTGATGGCCAGAAATGCACCCCCAAGACCCGCAAAATTTGGCACAT
51% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000084984.8
CDS GCA 72 bp ATCTCTTCTGACACAACTTCCTCCACAGGACATCACTaGTGGCAAGTGCATTCCAGTTCTTGTTCACTTGGG +
Preference number: 6 (lower is better)
Translates to: ISSDTTSSTGHH*WQVHSSSCSLG
Trigger: CCCAAGTGAACAAGAACTGGAATGCACTTGCCAGCAGTGATGTCCTGTGGAGGAAGTTGTGTCAGAAGAGAT
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000084984.8
CDS CAA 72 bp CGATCTCTTCCAGCTTCATATCAAATGTGCCAAATTTaGCGGGTCTTGGGGGTGCATTTCTGGCCATCAAGG +
Preference number: 6 (lower is better)
Translates to: RSLPASYQMCQI*RVLGVHFWPSR
Trigger: CCTTGATGGCCAGAAATGCACCCCCAAGACCCGCAAAATTTGGCACATTTGATATGAAGCTGGAAGAGATCG
49% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000084984.8
CDS CAA 90 bp CTTTGTTCCCGATCTCTTCCAGCTTCATATCAAATGTGCCAAATTTaGCGGGTCTTGGGGGTGCATTTCTGGCCATCAAGGTTATCCTGT +
Preference number: 6 (lower is better)
Translates to: LCSRSLPASYQMCQI*RVLGVHFWPSRLSC
Trigger: ACAGGATAACCTTGATGGCCAGAAATGCACCCCCAAGACCCGCAAAATTTGGCACATTTGATATGAAGCTGGAAGAGATCGGGAACAAAG
47% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000084984.8
CDS TCA 72 bp AGGATCCAGTTGAACAAACAATCGTGTCCTTTTCACTaGCTCCCATCCACTCTGCACGCTCCTTGTAGTCTT +
Preference number: 6 (lower is better)
Translates to: RIQLNKQSCPFH*LPSTLHAPCSL
Trigger: AAGACTACAAGGAGCGTGCAGAGTGGATGGGAGTCAGTGAAAAGGACACGATTGTTTGTTCAACTGGATCCT
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000084984.8
CDS CCA 72 bp GAGGGTAGTCATCAGTTCAATATAGGATTCCTGTACTaGGCTTTCCCAGGTCATAGCACCCTCGTGAATATC +
Preference number: 6 (lower is better)
Translates to: EGSHQFNIGFLY*AFPGHSTLVNI
Trigger: GATATTCACGAGGGTGCTATGACCTGGGAAAGCCCAGTACAGGAATCCTATATTGAACTGATGACTACCCTC
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000084984.8
CDS CCA 72 bp ATCCTGTCTTCCCTTCTTGGGGTCCAGAAGACTCCTTaGCATAATGGAAATTTGAGACTGGTAGACACTGGA +
Preference number: 6 (lower is better)
Translates to: ILSSLLGVQKTP*HNGNLRLVDTG
Trigger: TCCAGTGTCTACCAGTCTCAAATTTCCATTATGCCAAGGAGTCTTCTGGACCCCAAGAAGGGAAGACAGGAT
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000084984.8
CDS CAA 90 bp CTCCCATCCACTCTGCACGCTCCTTGTAGTCTTGCAAAGAGAAACTaGCTACCAAATGTCCTTGAACAGTTACTTTGTTCCCGATCTCTT +
Preference number: 6 (lower is better)
Translates to: LPSTLHAPCSLAKRN*LPNVLEQLLCSRSL
Trigger: AAGAGATCGGGAACAAAGTAACTGTTCAAGGACATTTGGTAGCAAGTTTCTCTTTGCAAGACTACAAGGAGCGTGCAGAGTGGATGGGAG
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000084984.8
CDS CAA 72 bp CATTTCTGGCCATCAAGGTTATCCTGTCTTCCCTTCTaGGGGTCCAGAAGACTCCTTGGCATAATGGAAATT +
Preference number: 6 (lower is better)
Translates to: HFWPSRLSCLPF*GSRRLLGIMEI
Trigger: AATTTCCATTATGCCAAGGAGTCTTCTGGACCCCAAGAAGGGAAGACAGGATAACCTTGATGGCCAGAAATG
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000084984.8
CDS CAA 90 bp TCTTCCCTTCTTGGGGTCCAGAAGACTCCTTGGCATAATGGAAATTaGAGACTGGTAGACACTGGATCAGAAAATTCTGATGTCCTCAGT +
Preference number: 6 (lower is better)
Translates to: SSLLGVQKTPWHNGN*RLVDTGSENSDVLS
Trigger: ACTGAGGACATCAGAATTTTCTGATCCAGTGTCTACCAGTCTCAAATTTCCATTATGCCAAGGAGTCTTCTGGACCCCAAGAAGGGAAGA
44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000084984.8
CDS TCA 72 bp CCCGAAATTCAAACTCCACAGGAATTTCCTTGTAAGTaGAATCTTCTGGCTTTGCCCGGGATTTGGCATGTT +
Preference number: 6 (lower is better)
Translates to: PEIQTPQEFPCK*NLLALPGIWHV
Trigger: AACATGCCAAATCCCGGGCAAAGCCAGAAGATTTCACTTACAAGGAAATTCCTGTGGAGTTTGAATTTCGGG
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000084984.8
CDS GCA 72 bp CTCTGCACGCTCCTTGTAGTCTTGCAAAGAGAAACTTaGTACCAAATGTCCTTGAACAGTTACTTTGTTCCC +
Preference number: 6 (lower is better)
Translates to: LCTLLVVLQRET*YQMSLNSYFVP
Trigger: GGGAACAAAGTAACTGTTCAAGGACATTTGGTAGCAAGTTTCTCTTTGCAAGACTACAAGGAGCGTGCAGAG
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000084984.8
CDS CCA 72 bp AAACTCCACAGGAATTTCCTTGTAAGTGAAATCTTCTaGCTTTGCCCGGGATTTGGCATGTTCTTGCCATGT +
Preference number: 6 (lower is better)
Translates to: KLHRNFLVSEIF*LCPGFGMFLPC
Trigger: ACATGGCAAGAACATGCCAAATCCCGGGCAAAGCCAGAAGATTTCACTTACAAGGAAATTCCTGTGGAGTTT
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000084984.8
CDS CAA 90 bp CTTGTAAGTGAAATCTTCTGGCTTTGCCCGGGATTTGGCATGTTCTaGCCATGTTCTGTAAAAGAAGAACTGCTTCCATGTCTTTTTGCC +
Preference number: 6 (lower is better)
Translates to: LVSEIFWLCPGFGMF*PCSVKEELLPCLFA
Trigger: GGCAAAAAGACATGGAAGCAGTTCTTCTTTTACAGAACATGGCAAGAACATGCCAAATCCCGGGCAAAGCCAGAAGATTTCACTTACAAG
43% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000084984.8
CDS CAA 90 bp TACCAAGACAATTGGGCCATCCTTTGTAAACACAGCTTTCAGTATTaGACAGGGAGAGAATATGCTCTTAGTTGCCAGAGCATCCCTGTT +
Preference number: 6 (lower is better)
Translates to: YQDNWAILCKHSFQY*TGREYALSCQSIPV
Trigger: AACAGGGATGCTCTGGCAACTAAGAGCATATTCTCTCCCTGTCAAATACTGAAAGCTGTGTTTACAAAGGATGGCCCAATTGTCTTGGTA
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000084984.8
CDS TCA 72 bp ATTGGGCCATCCTTTGTAAACACAGCTTTCAGTATTTaGCAGGGAGAGAATATGCTCTTAGTTGCCAGAGCA +
Preference number: 6 (lower is better)
Translates to: IGPSFVNTAFSI*QGENMLLVARA
Trigger: TGCTCTGGCAACTAAGAGCATATTCTCTCCCTGTCAAATACTGAAAGCTGTGTTTACAAAGGATGGCCCAAT
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000084984.8
CDS TCA 72 bp TGTGGGTTTCTTATAATCAGCAAGACCCATTTATTCTaGGGAGAGCAGTGGAGTTCATCAATAGCGTATGGG +
Preference number: 6 (lower is better)
Translates to: CGFLIISKTHLF*GEQWSSSIAYG
Trigger: CCCATACGCTATTGATGAACTCCACTGCTCTCCTCAGAATAAATGGGTCTTGCTGATTATAAGAAACCCACA
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000084984.8
CDS GCA 72 bp ACACTGGATCAGAAAATTCTGATGTCCTCAGTAAGCTaGTCATGTAAACCACCTTTGTCAAGACTTGTGGGT +
Preference number: 6 (lower is better)
Translates to: TLDQKILMSSVS*SCKPPLSRLVG
Trigger: ACCCACAAGTCTTGACAAAGGTGGTTTACATGAGCAGCTTACTGAGGACATCAGAATTTTCTGATCCAGTGT
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000084984.8
CDS CAA 72 bp AATTGGGCCATCCTTTGTAAACACAGCTTTCAGTATTaGACAGGGAGAGAATATGCTCTTAGTTGCCAGAGC +
Preference number: 6 (lower is better)
Translates to: NWAILCKHSFQY*TGREYALSCQS
Trigger: GCTCTGGCAACTAAGAGCATATTCTCTCCCTGTCAAATACTGAAAGCTGTGTTTACAAAGGATGGCCCAATT
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000084984.8
CDS CAA 72 bp GAGCAGTGGAGTTCATCAATAGCGTATGGGAATACATaGTGTCTGGAAATGAGGTGTAAGTCAGGAATCCTA +
Preference number: 6 (lower is better)
Translates to: EQWSSSIAYGNT*CLEMRCKSGIL
Trigger: TAGGATTCCTGACTTACACCTCATTTCCAGACACAATGTATTCCCATACGCTATTGATGAACTCCACTGCTC
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000084984.8
CDS CAA 72 bp CTTGGGGTCCAGAAGACTCCTTGGCATAATGGAAATTaGAGACTGGTAGACACTGGATCAGAAAATTCTGAT +
Preference number: 6 (lower is better)
Translates to: LGVQKTPWHNGN*RLVDTGSENSD
Trigger: ATCAGAATTTTCTGATCCAGTGTCTACCAGTCTCAAATTTCCATTATGCCAAGGAGTCTTCTGGACCCCAAG
43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000084984.8
CDS CAA 72 bp ACTCTGCACGCTCCTTGTAGTCTTGCAAAGAGAAACTaGCTACCAAATGTCCTTGAACAGTTACTTTGTTCC +
Preference number: 6 (lower is better)
Translates to: TLHAPCSLAKRN*LPNVLEQLLCS
Trigger: GGAACAAAGTAACTGTTCAAGGACATTTGGTAGCAAGTTTCTCTTTGCAAGACTACAAGGAGCGTGCAGAGT
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000084984.8
CDS CAA 90 bp TCGTGGAAGTCACCATACAGACAGCAGACTTCCCTTGTCCATTTCTaGTTAAGCCATGCCTTGAGATATAATATGCATAAGCCCGAAATT +
Preference number: 6 (lower is better)
Translates to: SWKSPYRQQTSLVHF*LSHALRYNMHKPEI
Trigger: AATTTCGGGCTTATGCATATTATATCTCAAGGCATGGCTTAACAAGAAATGGACAAGGGAAGTCTGCTGTCTGTATGGTGACTTCCACGA
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000084984.8
CDS CAA 72 bp GTAGTCTTGCAAAGAGAAACTTGCTACCAAATGTCCTaGAACAGTTACTTTGTTCCCGATCTCTTCCAGCTT +
Preference number: 6 (lower is better)
Translates to: VVLQRETCYQMS*NSYFVPDLFQL
Trigger: AAGCTGGAAGAGATCGGGAACAAAGTAACTGTTCAAGGACATTTGGTAGCAAGTTTCTCTTTGCAAGACTAC
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000084984.8
CDS CAA 90 bp TACAGACAGCAGACTTCCCTTGTCCATTTCTTGTTAAGCCATGCCTaGAGATATAATATGCATAAGCCCGAAATTCAAACTCCACAGGAA +
Preference number: 6 (lower is better)
Translates to: YRQQTSLVHFLLSHA*RYNMHKPEIQTPQE
Trigger: TTCCTGTGGAGTTTGAATTTCGGGCTTATGCATATTATATCTCAAGGCATGGCTTAACAAGAAATGGACAAGGGAAGTCTGCTGTCTGTA
41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000084984.8
CDS CAA 90 bp ACGCTCCTTGTAGTCTTGCAAAGAGAAACTTGCTACCAAATGTCCTaGAACAGTTACTTTGTTCCCGATCTCTTCCAGCTTCATATCAAA +
Preference number: 6 (lower is better)
Translates to: TLLVVLQRETCYQMS*NSYFVPDLFQLHIK
Trigger: TTTGATATGAAGCTGGAAGAGATCGGGAACAAAGTAACTGTTCAAGGACATTTGGTAGCAAGTTTCTCTTTGCAAGACTACAAGGAGCGT
41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000084984.8
CDS CAA 72 bp TCACCATACAGACAGCAGACTTCCCTTGTCCATTTCTaGTTAAGCCATGCCTTGAGATATAATATGCATAAG +
Preference number: 6 (lower is better)
Translates to: SPYRQQTSLVHF*LSHALRYNMHK
Trigger: CTTATGCATATTATATCTCAAGGCATGGCTTAACAAGAAATGGACAAGGGAAGTCTGCTGTCTGTATGGTGA
40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000084984.8
CDS CAA 72 bp ATCACTCCAATTATGCTCACATCATCACATAGTGCATaGTTAATGAAGCTGGACGGTAGCAGATATCTCCTA +
Preference number: 6 (lower is better)
Translates to: ITPIMLTSSHSA*LMKLDGSRYLL
Trigger: TAGGAGATATCTGCTACCGTCCAGCTTCATTAACAATGCACTATGTGATGATGTGAGCATAATTGGAGTGAT
40% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000084984.8
CDS CAA 90 bp CTACTTATCATCACTCCAATTATGCTCACATCATCACATAGTGCATaGTTAATGAAGCTGGACGGTAGCAGATATCTCCTATTTTGCAGT +
Preference number: 6 (lower is better)
Translates to: LLIITPIMLTSSHSA*LMKLDGSRYLLFCS
Trigger: ACTGCAAAATAGGAGATATCTGCTACCGTCCAGCTTCATTAACAATGCACTATGTGATGATGTGAGCATAATTGGAGTGATGATAAGTAG
39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000084984.8