Pregenerated sensors for FBXW14 (Mus musculus)
Ensembl gene IDs: ENSMUSG00000105589Ensembl transcript IDs: ENSMUST00000112041.6, ENSMUST00000198048.5, ENSMUST00000198844.5, ENSMUST00000198928.2
Found 57 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR-3UTR GCA 90 bp | CACAAGATTTCTGCAGTAATAAGCTGCTACATGGCCTGCTCATCTGAGTCAACCTGTCACAGCAAAATGTaGATGTGTGTGTGTGTGTGT | + |
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Preference number: 2 (lower is better) Translates to: HKISAVISCYMACSSESTCHSKM*MCVCVC Trigger: ACACACACACACACACATGCACATTTTGCTGTGACA...GGTTGACTCAGATGAGCAGGCCATGTAGCAGCTTATTACTGCAGAAATCTTGTG 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000198048.5 |
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| 3UTR-3UTR CCA 90 bp | CTGAGTCAACCCTATAGCAATGAAATGACAGATGTCACAGCAAAATGTGCATGTCTCTGTAGACCAGGCTaGTCTCAGAATTCAGATCTT | + |
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Preference number: 2 (lower is better) Translates to: LSQPYSNEMTDVTAKCACLCRPG*SQNSDL Trigger: AAGATCTGAATTCTGAGACCAGCCTGGTCTACAGAG...ACATGCACATTTTGCTGTGACATCTGTCATTTCATTGCTATAGGGTTGACTCAG 42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000198048.5 ENSMUST00000198844.5 |
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| 3UTR-3UTR CCA 90 bp | CATCTGAGTCAACCCTATAGCAATGAAATGACAGATGTCACAGCAAAATGTGCACTCTGTAGACCAGGCTaGTCTCAGAATTCAGATCTT | + |
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Preference number: 2 (lower is better) Translates to: HLSQPYSNEMTDVTAKCALCRPG*SQNSDL Trigger: AAGATCTGAATTCTGAGACCAGCCTGGTCTACAGAG...TGCACATTTTGCTGTGACATCTGTCATTTCATTGCTATAGGGTTGACTCAGATG 42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000198048.5 ENSMUST00000198844.5 |
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| 3UTR-3UTR GCA 90 bp | TGCACAAGTGCGTGTGTACATTTAGCCATAGTTTTTCTTTCAAAGAGAGGTTCTTGTCACAGCAAAATGTaGATGTGTGTGTGTGTGTGT | + |
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Preference number: 2 (lower is better) Translates to: CTSACVHLAIVFLSKRGSCHSKM*MCVCVC Trigger: ACACACACACACACACATGCACATTTTGCTGTGACA...AGAACCTCTCTTTGAAAGAAAAACTATGGCTAAATGTACACACGCACTTGTGCA 40% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENSMUST00000198048.5 ENSMUST00000198844.5 |
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| 3UTR-3UTR TCA 90 bp | CATCTGAGTCAACCCTATAGCAATGAAATGACAGATGTCACAGCAAAATGTGCACCTATAGCAATGAAATaGCAGATGTCACAGCAAAAT | + |
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Preference number: 2 (lower is better) Translates to: HLSQPYSNEMTDVTAKCAPIAMK*QMSQQN Trigger: ATTTTGCTGTGACATCTGTCATTTCATTGCTATAGG...TGCACATTTTGCTGTGACATCTGTCATTTCATTGCTATAGGGTTGACTCAGATG 39% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000198048.5 ENSMUST00000198844.5 |
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| 3UTR-3UTR CCA 90 bp | ACAAGTGCGTGTGTACATTTAGCCATAGTTTTTCTTTCAAAGAGAGGTTCTCTTGTTCACCACCAAATTTaGCCTCTTCACTGCTTAGAA | + |
|
Preference number: 2 (lower is better) Translates to: TSACVHLAIVFLSKRGSLVHHQI*PLHCLE Trigger: TTCTAAGCAGTGAAGAGGCCAAATTTGGTGGTGAAC...AAGAGAACCTCTCTTTGAAAGAAAAACTATGGCTAAATGTACACACGCACTTGT 39% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000198844.5 |
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| 3UTR-3UTR TCA 90 bp | TGCACAAGTGCGTGTGTACATTTAGCCATAGTTTTTCTTTCAAAGAGAGGTTCTGACCTTTATTATCATTaGGTAAGACGACACACAACA | + |
|
Preference number: 2 (lower is better) Translates to: CTSACVHLAIVFLSKRGSDLYYH*VRRHTT Trigger: TGTTGTGTGTCGTCTTACTCAATGATAATAAAGGTC...AGAACCTCTCTTTGAAAGAAAAACTATGGCTAAATGTACACACGCACTTGTGCA 38% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000198844.5 |
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| 3UTR-3UTR TCA 90 bp | ACAAGTGCGTGTGTACATTTAGCCATAGTTTTTCTTTCAAAGAGAGGTTCTCTTCCTATAGCAATGAAATaGCAGATGTCACAGCAAAAT | + |
|
Preference number: 2 (lower is better) Translates to: TSACVHLAIVFLSKRGSLPIAMK*QMSQQN Trigger: ATTTTGCTGTGACATCTGTCATTTCATTGCTATAGG...AAGAGAACCTCTCTTTGAAAGAAAAACTATGGCTAAATGTACACACGCACTTGT 37% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENSMUST00000198048.5 ENSMUST00000198844.5 |
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| 3UTR GCA 72 bp | ATGAAAGGTGTTCACCACCAAATTTGGCCTCTTCACTaGTTAGAATCACTGAACTCGCCAACCTGTGCTTGC | + |
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Preference number: 3 (lower is better) Translates to: MKGVHHQIWPLH*LESLNSPTCAC Trigger: GCAAGCACAGGTTGGCGAGTTCAGTGATTCTAAGCAGTGAAGAGGCCAAATTTGGTGGTGAACACCTTTCAT 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000198844.5 |
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| CDS-3UTR CCA 90 bp | TGGCCTGCTCATCTGAGTCAACCCTATAGCAATGAAATGACAGATGTCACAGCAGACTCCAAAATGGTCTaGTGTCCCCTCATCTTCTGC | + |
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Preference number: 4 (lower is better) Translates to: WPAHLSQPYSNEMTDVTADSKMV*CPLIFC Trigger: GCAGAAGATGAGGGGACACCAGACCATTTTGGAGTC...TGCTGTGACATCTGTCATTTCATTGCTATAGGGTTGACTCAGATGAGCAGGCCA 48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000198048.5 |
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| CDS-3UTR GCA 90 bp | CTGACTTCCAGAGTCAGGATGAAAGGTGTTCACCACCAAATTTGGCCTCTTCACAAGTCATTTAGGCGGTaGCCTATCAGAAAGACCCAT | + |
|
Preference number: 4 (lower is better) Translates to: LTSRVRMKGVHHQIWPLHKSFRR*PIRKTH Trigger: ATGGGTCTTTCTGATAGGGCACCGCCTAAATGACTT...GTGAAGAGGCCAAATTTGGTGGTGAACACCTTTCATCCTGACTCTGGAAGTCAG 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000198844.5 |
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| CDS-3UTR CCA 90 bp | TCAGATCTTCCATCTGTTTCTGACTTCCAGAGTCAGGATGAAAGGTGTTCACCAGACTCCAAAATGGTCTaGTGTCCCCTCATCTTCTGC | + |
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Preference number: 4 (lower is better) Translates to: SDLPSVSDFQSQDERCSPDSKMV*CPLIFC Trigger: GCAGAAGATGAGGGGACACCAGACCATTTTGGAGTC...TGGTGAACACCTTTCATCCTGACTCTGGAAGTCAGAAACAGATGGAAGATCTGA 47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000198844.5 |
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| CDS-3UTR CCA 90 bp | TCTGACTTCCAGAGTCAGGATGAAAGGTGTTCACCACCAAATTTGGCCTCTTCATCAGACAGCAGGGCTTaGGACTATTATTTGCCACTG | + |
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Preference number: 4 (lower is better) Translates to: SDFQSQDERCSPPNLASSSDSRA*DYYLPL Trigger: CAGTGGCAAATAATAGTCCCAAGCCCTGCTGTCTGA...TGAAGAGGCCAAATTTGGTGGTGAACACCTTTCATCCTGACTCTGGAAGTCAGA 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000198844.5 |
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| CDS-3UTR GCA 90 bp | TCACCACCAAATTTGGCCTCTTCACTGCTTAGAATCACTGAACTCGCCAACCTGCAGGACATCACTGCTTaGAAGTTCATTCCAGTTCTT | + |
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Preference number: 4 (lower is better) Translates to: SPPNLASSLLRITELANLQDITA*KFIPVL Trigger: AAGAACTGGAATGAACTTGCAAGCAGTGATGTCCTG...CAGGTTGGCGAGTTCAGTGATTCTAAGCAGTGAAGAGGCCAAATTTGGTGGTGA 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000198844.5 |
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| CDS-3UTR GCA 90 bp | ATCTTCCATCTGTTTCTGACTTCCAGAGTCAGGATGAAAGGTGTTCACCACCAAATAGTGACTGCAATTTaGATCTCAGGGAGGGTAGTC | + |
|
Preference number: 4 (lower is better) Translates to: IFHLFLTSRVRMKGVHHQIVTAI*ISGRVV Trigger: GACTACCCTCCCTGAGATGCAAATTGCAGTCACTAT...TTGGTGGTGAACACCTTTCATCCTGACTCTGGAAGTCAGAAACAGATGGAAGAT 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000198844.5 |
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| CDS-3UTR CCA 90 bp | CCTGCTCATCTGAGTCAACCCTATAGCAATGAAATGACAGATGTCACAGCAAAACTGCCAGCGAGAAGCTaGCTGTCAAATATCCTTGAA | + |
|
Preference number: 4 (lower is better) Translates to: PAHLSQPYSNEMTDVTAKLPARS*LSNILE Trigger: TTCAAGGATATTTGACAGCCAGCTTCTCGCTGGCAG...TTTTGCTGTGACATCTGTCATTTCATTGCTATAGGGTTGACTCAGATGAGCAGG 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000198048.5 |
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| CDS-3UTR GCA 90 bp | TCAGATCTTCCATCTGTTTCTGACTTCCAGAGTCAGGATGAAAGGTGTTCACCAGTCTTGGCGTGTTCTTaGCATGTTTTGTTAAAGAAG | + |
|
Preference number: 4 (lower is better) Translates to: SDLPSVSDFQSQDERCSPVLACS*HVLLKK Trigger: CTTCTTTAACAAAACATGGCAAGAACACGCCAAGAC...TGGTGAACACCTTTCATCCTGACTCTGGAAGTCAGAAACAGATGGAAGATCTGA 42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000198844.5 |
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| CDS-3UTR GCA 90 bp | CCTGCTCATCTGAGTCAACCCTATAGCAATGAAATGACAGATGTCACAGCAAAAGCTTCTCTTCTCCCATaGATATATATCCAAAGAGCC | + |
|
Preference number: 4 (lower is better) Translates to: PAHLSQPYSNEMTDVTAKASLLP*IYIQRA Trigger: GGCTCTTTGGATATATATGCATGGGAGAAGAGAAGC...TTTTGCTGTGACATCTGTCATTTCATTGCTATAGGGTTGACTCAGATGAGCAGG 42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000198048.5 |
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| CDS-3UTR GCA 90 bp | CATCTGAGTCAACCCTATAGCAATGAAATGACAGATGTCACAGCAAAATGTGCAGACATTCAAGGTATATaGCATCAGACAGCAGGGCTT | + |
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Preference number: 4 (lower is better) Translates to: HLSQPYSNEMTDVTAKCADIQGI*HQTAGL Trigger: AAGCCCTGCTGTCTGATGGCATATACCTTGAATGTC...TGCACATTTTGCTGTGACATCTGTCATTTCATTGCTATAGGGTTGACTCAGATG 42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000198844.5 |
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| CDS-3UTR CCA 90 bp | TGCACAAGTGCGTGTGTACATTTAGCCATAGTTTTTCTTTCAAAGAGAGGTTCTCTGCCAGCGAGAAGCTaGCTGTCAAATATCCTTGAA | + |
|
Preference number: 4 (lower is better) Translates to: CTSACVHLAIVFLSKRGSLPARS*LSNILE Trigger: TTCAAGGATATTTGACAGCCAGCTTCTCGCTGGCAG...AGAACCTCTCTTTGAAAGAAAAACTATGGCTAAATGTACACACGCACTTGTGCA 42% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENSMUST00000198048.5 ENSMUST00000198844.5 |
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| CDS-3UTR CCA 90 bp | CCTGCTCATCTGAGTCAACCCTATAGCAATGAAATGACAGATGTCACAGCAAAAGTTCACCACCAAATTTaGCCTCTTCACTGCTTAGAA | + |
|
Preference number: 4 (lower is better) Translates to: PAHLSQPYSNEMTDVTAKVHHQI*PLHCLE Trigger: TTCTAAGCAGTGAAGAGGCCAAATTTGGTGGTGAAC...TTTTGCTGTGACATCTGTCATTTCATTGCTATAGGGTTGACTCAGATGAGCAGG 42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000198048.5 |
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| CDS-3UTR TCA 90 bp | CATCTGAGTCAACCCTATAGCAATGAAATGACAGATGTCACAGCAAAATGTGCAGAAATTCCTTGTAAGTaGAATCTTCTGGCTTTGCCC | + |
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Preference number: 4 (lower is better) Translates to: HLSQPYSNEMTDVTAKCAEIPCK*NLLALP Trigger: GGGCAAAGCCAGAAGATTTCACTTACAAGGAATTTC...TGCACATTTTGCTGTGACATCTGTCATTTCATTGCTATAGGGTTGACTCAGATG 41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000198844.5 |
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| CDS-3UTR CCA 90 bp | TGCACAAGTGCGTGTGTACATTTAGCCATAGTTTTTCTTTCAAAGAGAGGTTCTTCTCCAGATCTCTTCTaGGCAGTAGTGAAATGTCTG | + |
|
Preference number: 4 (lower is better) Translates to: CTSACVHLAIVFLSKRGSSPDLF*AVVKCL Trigger: CAGACATTTCACTACTGCCCAGAAGAGATCTGGAGA...AGAACCTCTCTTTGAAAGAAAAACTATGGCTAAATGTACACACGCACTTGTGCA 41% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENSMUST00000198048.5 ENSMUST00000198844.5 |
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| CDS-3UTR TCA 90 bp | CTGCTTAGAATCACTGAACTCGCCAACCTGTGCTTGCAAATAGACCTTTATTATGAGAGAGAATCTAGTTaGACAAACAATCACGTCCTT | + |
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Preference number: 4 (lower is better) Translates to: LLRITELANLCLQIDLYYERESS*TNNHVL Trigger: AAGGACGTGATTGTTTGTTCAACTAGATTCTCTCTC...ATAATAAAGGTCTATTTGCAAGCACAGGTTGGCGAGTTCAGTGATTCTAAGCAG 40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000198844.5 |
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| CDS-3UTR GCA 90 bp | TGCACAAGTGCGTGTGTACATTTAGCCATAGTTTTTCTTTCAAAGAGAGGTTCTATGGCCTCAGTAAGCTaGTCATGTAAAACACCTTTG | + |
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Preference number: 4 (lower is better) Translates to: CTSACVHLAIVFLSKRGSMASVS*SCKTPL Trigger: CAAAGGTGTTTTACATGAGCAGCTTACTGAGGCCAT...AGAACCTCTCTTTGAAAGAAAAACTATGGCTAAATGTACACACGCACTTGTGCA 40% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000198844.5 |
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| CDS-3UTR TCA 90 bp | CTGAGTCAACCCTATAGCAATGAAATGACAGATGTCACAGCAAAATGTGCATGTCCACAGTTTGATAGTTaGTTGCATATCTATAGTGAC | + |
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Preference number: 4 (lower is better) Translates to: LSQPYSNEMTDVTAKCACPQFDS*LHIYSD Trigger: GTCACTATAGATATGCAATCAACTATCAAACTGTGG...ACATGCACATTTTGCTGTGACATCTGTCATTTCATTGCTATAGGGTTGACTCAG 39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000198844.5 |
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| CDS-3UTR TCA 90 bp | ACAAGTGCGTGTGTACATTTAGCCATAGTTTTTCTTTCAAAGAGAGGTTCTCTTGAGAGAGAATCTAGTTaGACAAACAATCACGTCCTT | + |
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Preference number: 4 (lower is better) Translates to: TSACVHLAIVFLSKRGSLERESS*TNNHVL Trigger: AAGGACGTGATTGTTTGTTCAACTAGATTCTCTCTC...AAGAGAACCTCTCTTTGAAAGAAAAACTATGGCTAAATGTACACACGCACTTGT 38% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENSMUST00000198048.5 ENSMUST00000198844.5 |
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| CDS-3UTR GCA 90 bp | ACAAGTGCGTGTGTACATTTAGCCATAGTTTTTCTTTCAAAGAGAGGTTCTCTTTTGTTAAAGAAGAACTaGTTCCATGTCTCTAAGCCA | + |
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Preference number: 4 (lower is better) Translates to: TSACVHLAIVFLSKRGSLLLKKN*FHVSKP Trigger: TGGCTTAGAGACATGGAAGCAGTTCTTCTTTAACAA...AAGAGAACCTCTCTTTGAAAGAAAAACTATGGCTAAATGTACACACGCACTTGT 37% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000198844.5 |
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| CDS GCA 90 bp | AGTAGAGCCATCTCTTCTGACACAACTTCCTCCACAGGACATCACTaGTTGCAAGTTCATTCCAGTTCTTGTTCACTTGGGCAGCCTGTA | + |
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Preference number: 5 (lower is better) Translates to: SRAISSDTTSSTGHH*LQVHSSSCSLGQPV Trigger: TACAGGCTGCCCAAGTGAACAAGAACTGGAATGAACTTGCAAGCAGTGATGTCCTGTGGAGGAAGTTGTGTCAGAAGAGATGGCTCTACT 48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000112041.6 ENSMUST00000198844.5 |
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| CDS TCA 90 bp | CGACGCCAGAACTTCCTTGTTGTGGCAGTCCCACAGTTTGATAGTTaGTTGCATATCTATAGTGACTGCAATTTGCATCTCAGGGAGGGT | + |
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Preference number: 5 (lower is better) Translates to: RRQNFLVVAVPQFDS*LHIYSDCNLHLREG Trigger: ACCCTCCCTGAGATGCAAATTGCAGTCACTATAGATATGCAATCAACTATCAAACTGTGGGACTGCCACAACAAGGAAGTTCTGGCGTCG 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000112041.6 ENSMUST00000198844.5 |
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| CDS GCA 90 bp | GCCAGAACTTCCTTGTTGTGGCAGTCCCACAGTTTGATAGTTGATTaGATATCTATAGTGACTGCAATTTGCATCTCAGGGAGGGTAGTC | + |
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Preference number: 5 (lower is better) Translates to: ARTSLLWQSHSLIVD*ISIVTAICISGRVV Trigger: GACTACCCTCCCTGAGATGCAAATTGCAGTCACTATAGATATGCAATCAACTATCAAACTGTGGGACTGCCACAACAAGGAAGTTCTGGC 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000112041.6 ENSMUST00000198844.5 |
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| CDS GCA 90 bp | GCATCACCTACCAAGACAATCGGGCCATCCTTAGTAAATTCAGATTaGAGTAATTTACAGGAAAAGAACAGGCCCGTTTTCGACGCCAGA | + |
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Preference number: 5 (lower is better) Translates to: ASPTKTIGPSLVNSD*SNLQEKNRPVFDAR Trigger: TCTGGCGTCGAAAACGGGCCTGTTCTTTTCCTGTAAATTACTGCAATCTGAATTTACTAAGGATGGCCCGATTGTCTTGGTAGGTGATGC 46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000198844.5 |
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| CDS-3UTR CAA 90 bp | GTTTCTGACTTCCAGAGTCAGGATGAAAGGTGTTCACCACCAAATTTGGCCTCTGGTCTTGGCGTGTTCTaGCCATGTTTTGTTAAAGAA | + |
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Preference number: 5 (lower is better) Translates to: VSDFQSQDERCSPPNLASGLGVF*PCFVKE Trigger: TTCTTTAACAAAACATGGCAAGAACACGCCAAGACC...AGAGGCCAAATTTGGTGGTGAACACCTTTCATCCTGACTCTGGAAGTCAGAAAC 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000198844.5 |
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| CDS-3UTR CAA 90 bp | TCACCACCAAATTTGGCCTCTTCACTGCTTAGAATCACTGAACTCGCCAACCTGTGTTCTTGCCATGTTTaGTTAAAGAAGAACTGCTTC | + |
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Preference number: 5 (lower is better) Translates to: SPPNLASSLLRITELANLCSCHV*LKKNCF Trigger: GAAGCAGTTCTTCTTTAACAAAACATGGCAAGAACA...CAGGTTGGCGAGTTCAGTGATTCTAAGCAGTGAAGAGGCCAAATTTGGTGGTGA 43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000198844.5 |
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| CDS TCA 90 bp | CAGACGGAGACCATTTATGTCAAAGAGCAAGAGAGAGAATCTAGTTaGACAAACAATCACGTCCTTATCACTGACTCCAAAATGGTCTGG | + |
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Preference number: 5 (lower is better) Translates to: QTETIYVKEQERESS*TNNHVLITDSKMVW Trigger: CCAGACCATTTTGGAGTCAGTGATAAGGACGTGATTGTTTGTTCAACTAGATTCTCTCTCTTGCTCTTTGACATAAATGGTCTCCGTCTG 42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000112041.6 ENSMUST00000198048.5 ENSMUST00000198844.5 |
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| CDS GCA 90 bp | GTCATACAGACAGCAGACTTTCCTTGTCCATTTCTTGTTAAGCCATaGCTTGAGATATACCATGGATGTGCCCGAAATTCAAACTCCATA | + |
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Preference number: 5 (lower is better) Translates to: VIQTADFPCPFLVKP*LEIYHGCARNSNSI Trigger: TATGGAGTTTGAATTTCGGGCACATCCATGGTATATCTCAAGGCATGGCTTAACAAGAAATGGACAAGGAAAGTCTGCTGTCTGTATGAC 42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000112041.6 ENSMUST00000198844.5 ENSMUST00000198928.2 |
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| CDS-3UTR CAA 90 bp | CTGCTTAGAATCACTGAACTCGCCAACCTGTGCTTGCAAATAGACCTTTATTATTTCCTTGTCCATTTCTaGTTAAGCCATGCCTTGAGA | + |
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Preference number: 5 (lower is better) Translates to: LLRITELANLCLQIDLYYFLVHF*LSHALR Trigger: TCTCAAGGCATGGCTTAACAAGAAATGGACAAGGAA...ATAATAAAGGTCTATTTGCAAGCACAGGTTGGCGAGTTCAGTGATTCTAAGCAG 41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000198844.5 |
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| CDS CCA 72 bp | AACAATCACGTCCTTATCACTGACTCCAAAATGGTCTaGTGTCCCCTCATCTTCTGCCAGCGAGAAGCTGGC | + |
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Preference number: 6 (lower is better) Translates to: NNHVLITDSKMV*CPLIFCQREAG Trigger: GCCAGCTTCTCGCTGGCAGAAGATGAGGGGACACCAGACCATTTTGGAGTCAGTGATAAGGACGTGATTGTT 51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 3 transcripts: ENSMUST00000112041.6 ENSMUST00000198048.5 ENSMUST00000198844.5 |
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| CDS GCA 72 bp | ACACAGGGGCAGAGAATTCTGATGGCCTCAGTAAGCTaGTCATGTAAAACACCAAGACAATCGGGCCATCCT | + |
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Preference number: 6 (lower is better) Translates to: TQGQRILMASVS*SCKTPRQSGHP Trigger: AGGATGGCCCGATTGTCTTGGTGTTTTACATGAGCAGCTTACTGAGGCCATCAGAATTCTCTGCCCCTGTGT 50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000112041.6 |
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| CDS TCA 72 bp | GGCTGTTTTGGACTTTCCCAGGTCATAGCACCCTCGTaGATATCCCAGGTAGAAATCCTGTTCATGGAAGTC | + |
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Preference number: 6 (lower is better) Translates to: GCFGLSQVIAPS*ISQVEILFMEV Trigger: GACTTCCATGAACAGGATTTCTACCTGGGATATTCACGAGGGTGCTATGACCTGGGAAAGTCCAAAACAGCC 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000112041.6 ENSMUST00000198844.5 |
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| CDS GCA 72 bp | ACTGACTCCAAAATGGTCTGGTGTCCCCTCATCTTCTaGCAGCGAGAAGCTGGCTGTCAAATATCCTTGAAT | + |
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Preference number: 6 (lower is better) Translates to: TDSKMVWCPLIF*QREAGCQISLN Trigger: ATTCAAGGATATTTGACAGCCAGCTTCTCGCTGGCAGAAGATGAGGGGACACCAGACCATTTTGGAGTCAGT 49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 3 transcripts: ENSMUST00000112041.6 ENSMUST00000198048.5 ENSMUST00000198844.5 |
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| CDS CAA 72 bp | GGCTTTGCCCGGGTCTTGGCGTGTTCTTGCCATGTTTaGTTAAAGAAGAACTGCTTCCATGTCTCTAAGCCA | + |
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Preference number: 6 (lower is better) Translates to: GFARVLACSCHV*LKKNCFHVSKP Trigger: TGGCTTAGAGACATGGAAGCAGTTCTTCTTTAACAAAACATGGCAAGAACACGCCAAGACCCGGGCAAAGCC 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000112041.6 ENSMUST00000198844.5 ENSMUST00000198928.2 |
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| CDS CCA 72 bp | AACAGGCCCGTTTTCGACGCCAGAACTTCCTTGTTGTaGCAGTCCCACAGTTTGATAGTTGATTGCATATCT | + |
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Preference number: 6 (lower is better) Translates to: NRPVFDARTSLL*QSHSLIVDCIS Trigger: AGATATGCAATCAACTATCAAACTGTGGGACTGCCACAACAAGGAAGTTCTGGCGTCGAAAACGGGCCTGTT 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000112041.6 ENSMUST00000198844.5 |
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| CDS GCA 72 bp | AAATCTTCTGGCTTTGCCCGGGTCTTGGCGTGTTCTTaGCATGTTTTGTTAAAGAAGAACTGCTTCCATGTC | + |
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Preference number: 6 (lower is better) Translates to: KSSGFARVLACS*HVLLKKNCFHV Trigger: GACATGGAAGCAGTTCTTCTTTAACAAAACATGGCAAGAACACGCCAAGACCCGGGCAAAGCCAGAAGATTT 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000112041.6 ENSMUST00000198844.5 ENSMUST00000198928.2 |
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| CDS GCA 72 bp | ACACAGGGGCAGAGAATTCTGATGGCCTCAGTAAGCTaGTCATGTAAAACACCTTTGTCAAGTCATTTAGGC | + |
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Preference number: 6 (lower is better) Translates to: TQGQRILMASVS*SCKTPLSSHLG Trigger: GCCTAAATGACTTGACAAAGGTGTTTTACATGAGCAGCTTACTGAGGCCATCAGAATTCTCTGCCCCTGTGT 46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000198844.5 |
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| CDS CAA 72 bp | GAAATCTTCTGGCTTTGCCCGGGTCTTGGCGTGTTCTaGCCATGTTTTGTTAAAGAAGAACTGCTTCCATGT | + |
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Preference number: 6 (lower is better) Translates to: EIFWLCPGLGVF*PCFVKEELLPC Trigger: ACATGGAAGCAGTTCTTCTTTAACAAAACATGGCAAGAACACGCCAAGACCCGGGCAAAGCCAGAAGATTTC 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000112041.6 ENSMUST00000198844.5 ENSMUST00000198928.2 |
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| CDS GCA 72 bp | CATAGGAAATTCCTTGTAAGTGAAATCTTCTGGCTTTaGCCGGGTCTTGGCGTGTTCTTGCCATGTTTTGTT | + |
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Preference number: 6 (lower is better) Translates to: HRKFLVSEIFWL*PGLGVFLPCFV Trigger: AACAAAACATGGCAAGAACACGCCAAGACCCGGGCAAAGCCAGAAGATTTCACTTACAAGGAATTTCCTATG 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000112041.6 ENSMUST00000198844.5 ENSMUST00000198928.2 |
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| CDS GCA 72 bp | ATGAAAGGTGTTCACCACCAAATTTGGCCTCTTCACTaGTTAGAATCACTGAACTCGCCAACCCAGACATTT | + |
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Preference number: 6 (lower is better) Translates to: MKGVHHQIWPLH*LESLNSPTQTF Trigger: AAATGTCTGGGTTGGCGAGTTCAGTGATTCTAAGCAGTGAAGAGGCCAAATTTGGTGGTGAACACCTTTCAT 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000198048.5 |
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| CDS GCA 72 bp | ACAGCAGACTTTCCTTGTCCATTTCTTGTTAAGCCATaGCTTGAGATATACCATGGATGTGCCCGAAATTCA | + |
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Preference number: 6 (lower is better) Translates to: TADFPCPFLVKP*LEIYHGCARNS Trigger: TGAATTTCGGGCACATCCATGGTATATCTCAAGGCATGGCTTAACAAGAAATGGACAAGGAAAGTCTGCTGT 43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000112041.6 ENSMUST00000198844.5 ENSMUST00000198928.2 |
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| CDS GCA 72 bp | TCCTTGTTGTGGCAGTCCCACAGTTTGATAGTTGATTaGATATCTATAGTGACTGCAATTTGCATCTCAGGG | + |
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Preference number: 6 (lower is better) Translates to: SLLWQSHSLIVD*ISIVTAICISG Trigger: CCCTGAGATGCAAATTGCAGTCACTATAGATATGCAATCAACTATCAAACTGTGGGACTGCCACAACAAGGA 43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000112041.6 ENSMUST00000198844.5 |
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| CDS CAA 72 bp | AAATTAAGGACATCAGGGTTATCCTGTCTTCCCTTCTaGGGGTCCAGAAGACTTTTCGGATTAGTGGAACTT | + |
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Preference number: 6 (lower is better) Translates to: KLRTSGLSCLPF*GSRRLFGLVEL Trigger: AAGTTCCACTAATCCGAAAAGTCTTCTGGACCCCAAGAAGGGAAGACAGGATAACCCTGATGTCCTTAATTT 43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000112041.6 ENSMUST00000198844.5 |
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| CDS CAA 90 bp | TGTTCATGGAAGTCATACAGACAGCAGACTTTCCTTGTCCATTTCTaGTTAAGCCATGCCTTGAGATATACCATGGATGTGCCCGAAATT | + |
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Preference number: 6 (lower is better) Translates to: CSWKSYRQQTFLVHF*LSHALRYTMDVPEI Trigger: AATTTCGGGCACATCCATGGTATATCTCAAGGCATGGCTTAACAAGAAATGGACAAGGAAAGTCTGCTGTCTGTATGACTTCCATGAACA 42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000112041.6 ENSMUST00000198844.5 ENSMUST00000198928.2 |
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| CDS GCA 72 bp | ACCAAGACAATCGGGCCATCCTTAGTAAATTCAGATTaGAGTAATTTACAGGAAAAGAACAGGCCCGTTTTC | + |
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Preference number: 6 (lower is better) Translates to: TKTIGPSLVNSD*SNLQEKNRPVF Trigger: GAAAACGGGCCTGTTCTTTTCCTGTAAATTACTGCAATCTGAATTTACTAAGGATGGCCCGATTGTCTTGGT 42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000112041.6 ENSMUST00000198844.5 |
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| CDS CAA 72 bp | CAGACTTTCCTTGTCCATTTCTTGTTAAGCCATGCCTaGAGATATACCATGGATGTGCCCGAAATTCAAACT | + |
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Preference number: 6 (lower is better) Translates to: QTFLVHFLLSHA*RYTMDVPEIQT Trigger: AGTTTGAATTTCGGGCACATCCATGGTATATCTCAAGGCATGGCTTAACAAGAAATGGACAAGGAAAGTCTG 42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000112041.6 ENSMUST00000198844.5 ENSMUST00000198928.2 |
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| CDS CAA 72 bp | AAGTCATACAGACAGCAGACTTTCCTTGTCCATTTCTaGTTAAGCCATGCCTTGAGATATACCATGGATGTG | + |
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Preference number: 6 (lower is better) Translates to: KSYRQQTFLVHF*LSHALRYTMDV Trigger: CACATCCATGGTATATCTCAAGGCATGGCTTAACAAGAAATGGACAAGGAAAGTCTGCTGTCTGTATGACTT 42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000112041.6 ENSMUST00000198844.5 ENSMUST00000198928.2 |
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| CDS CAA 72 bp | CAGACATTCAAGGTATATGCCATCAGACAGCAGGGCTaGGGACTATTATTTGCCACTGAAATTATGCTCATA | + |
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Preference number: 6 (lower is better) Translates to: QTFKVYAIRQQG*GLLFATEIMLI Trigger: TATGAGCATAATTTCAGTGGCAAATAATAGTCCCAAGCCCTGCTGTCTGATGGCATATACCTTGAATGTCTG 42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000112041.6 ENSMUST00000198844.5 |
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| CDS CCA 72 bp | AGACATTCAAGGTATATGCCATCAGACAGCAGGGCTTaGGACTATTATTTGCCACTGAAATTATGCTCATAT | + |
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Preference number: 6 (lower is better) Translates to: RHSRYMPSDSRA*DYYLPLKLCSY Trigger: ATATGAGCATAATTTCAGTGGCAAATAATAGTCCCAAGCCCTGCTGTCTGATGGCATATACCTTGAATGTCT 40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000112041.6 ENSMUST00000198844.5 |
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