RADAR | Search for sensor designs | Human genes | Mouse genes | Code

Pregenerated sensors for FBXW13 (Mus musculus)

Ensembl gene IDs: ENSMUSG00000049314

Ensembl transcript IDs: ENSMUST00000061456.8, ENSMUST00000199102.2, ENSMUST00000199118.2

Found 34 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).

Type Sensor Details
3UTR TCA 90 bp TTTGCTGTGGTAGCCTTCTCCTGCTTTGCAGCTGATAACACCCATTaGGCTGCTGGCATCTCTCTTCCCACGCGTACACAACCAAAGAGC +
Preference number: 1 (lower is better)
Translates to: FAVVAFSCFAADNTH*AAGISLPTRTQPKS
Trigger: GCTCTTTGGTTGTGTACGCGTGGGAAGAGAGATGCCAGCAGCTCAATGGGTGTTATCAGCTGCAAAGCAGGAGAAGGCTACCACAGCAAA
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000199118.2
3UTR GCA 90 bp ATACACACAACCCACTCAGTTTTAAAGATCAGATGTCAAGATATATaGCATCAGAAAGCTGGGGATGGAATGAGTTGTCATCACTCGAAT +
Preference number: 1 (lower is better)
Translates to: IHTTHSVLKIRCQDI*HQKAGDGMSCHHSN
Trigger: ATTCGAGTGATGACAACTCATTCCATCCCCAGCTTTCTGATGGCATATATCTTGACATCTGATCTTTAAAACTGAGTGGGTTGTGTGTAT
40% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000199118.2
3UTR CCA 90 bp ATCTCTTTCAGCTTCATATCAAATGTGATAAACTTTGTGATCTTTTaGGTGCGACGTATGGACATCAGGGTTATCCTGTCTTCCATTCTT +
Preference number: 1 (lower is better)
Translates to: ISFSFISNVINFVIF*VRRMDIRVILSSIL
Trigger: AAGAATGGAAGACAGGATAACCCTGATGTCCATACGTCGCACCCAAAAGATCACAAAGTTTATCACATTTGATATGAAGCTGAAAGAGAT
39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000199118.2
3UTR CCA 90 bp TTTAAAGATCAGATGTCAAGATATATGCCATCAGAAAGCTGGGGATaGAATGAGTTGTCATCACTCGAATTATGCTCATATCATCACATA +
Preference number: 1 (lower is better)
Translates to: FKDQMSRYMPSESWG*NELSSLELCSYHHI
Trigger: TATGTGATGATATGAGCATAATTCGAGTGATGACAACTCATTCCATCCCCAGCTTTCTGATGGCATATATCTTGACATCTGATCTTTAAA
37% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000199118.2
3UTR-3UTR CCA 90 bp CGACGTATGGACATCAGGGTTATCCTGTCTTCCATTCTTGGGGTCCAGAAGGCTTTTCAGCAATTTACATaGAGATTCCAGGTTGCTAGT +
Preference number: 2 (lower is better)
Translates to: RRMDIRVILSSILGVQKAFQQFT*RFQVAS
Trigger: ACTAGCAACCTGGAATCTCCATGTAAATTGCTGAAA...AGCCTTCTGGACCCCAAGAATGGAAGACAGGATAACCCTGATGTCCATACGTCG
46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000199118.2
3UTR-3UTR TCA 90 bp TTAAAGATCAGATGTCAAGATATATGCCATCAGAAAGCTGGGGATGGAATGAGTGCTGATAACACCCATTaGGCTGCTGGCATCTCTCTT +
Preference number: 2 (lower is better)
Translates to: LKIRCQDICHQKAGDGMSADNTH*AAGISL
Trigger: AAGAGAGATGCCAGCAGCTCAATGGGTGTTATCAGC...ACTCATTCCATCCCCAGCTTTCTGATGGCATATATCTTGACATCTGATCTTTAA
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000199118.2
3UTR CAA 90 bp GATCTCTTTCAGCTTCATATCAAATGTGATAAACTTTGTGATCTTTaGGGTGCGACGTATGGACATCAGGGTTATCCTGTCTTCCATTCT +
Preference number: 2 (lower is better)
Translates to: DLFQLHIKCDKLCDL*GATYGHQGYPVFHS
Trigger: AGAATGGAAGACAGGATAACCCTGATGTCCATACGTCGCACCCAAAAGATCACAAAGTTTATCACATTTGATATGAAGCTGAAAGAGATC
40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000199118.2
3UTR-3UTR TCA 90 bp ATGTCAAGATATATGCCATCAGAAAGCTGGGGATGGAATGAGTTGTCATCACTCCCACAGTTTGATAGTTaGTTGAATATCTACAGTGAC +
Preference number: 2 (lower is better)
Translates to: MSRYMPSESWGWNELSSLPQFDS*LNIYSD
Trigger: GTCACTGTAGATATTCAATCAACTATCAAACTGTGG...GAGTGATGACAACTCATTCCATCCCCAGCTTTCTGATGGCATATATCTTGACAT
40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000199118.2
3UTR-3UTR CCA 90 bp CAAGATATATGCCATCAGAAAGCTGGGGATGGAATGAGTTGTCATCACTCGAATGTCCAGAAGGCTCTTTaGCATAATGAAAATTTAAGA +
Preference number: 2 (lower is better)
Translates to: QDICHQKAGDGMSCHHSNVQKAL*HNENLR
Trigger: TCTTAAATTTTCATTATGCCAAAGAGCCTTCTGGAC...ATTCGAGTGATGACAACTCATTCCATCCCCAGCTTTCTGATGGCATATATCTTG
39% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000199118.2
3UTR TCA 72 bp GTAGCCTTCTCCTGCTTTGCAGCTGATAACACCCATTaGGCTGCTGGCATCTCTCTTCCCACGCGTACACAA +
Preference number: 3 (lower is better)
Translates to: VAFSCFAADNTH*AAGISLPTRTQ
Trigger: TTGTGTACGCGTGGGAAGAGAGATGCCAGCAGCTCAATGGGTGTTATCAGCTGCAAAGCAGGAGAAGGCTAC
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000199118.2
3UTR GCA 72 bp ACACAGGGGCAGAGAATTCTGATGTCCTCAGTAAGCTaGTCATGTAAAACACCTTTGGCAAGATATGTGGGT +
Preference number: 3 (lower is better)
Translates to: TQGQRILMSSVS*SCKTPLARYVG
Trigger: ACCCACATATCTTGCCAAAGGTGTTTTACATGAGCAGCTTACTGAGGACATCAGAATTCTCTGCCCCTGTGT
46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000199118.2
3UTR CCA 72 bp GCCATCCTTGGTAAAGACAGCTTTCAGCAATTTACATaGAGATTCCAGGTTGCTAGTTGCCAGAGCTTCACT +
Preference number: 3 (lower is better)
Translates to: AILGKDSFQQFT*RFQVASCQSFT
Trigger: AGTGAAGCTCTGGCAACTAGCAACCTGGAATCTCCATGTAAATTGCTGAAAGCTGTCTTTACCAAGGATGGC
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000199118.2
3UTR-3UTR CAA 90 bp TTAAGAATGGTAGACACAGGGGCAGAGAATTCTGATGTCCTCAGTAAGCTGCTCAGGAGAGCAGTTGAGTaGATTAATACTGCATTGGAA +
Preference number: 3 (lower is better)
Translates to: LRMVDTGAENSDVLSKLLRRAVE*INTALE
Trigger: TTCCAATGCAGTATTAATCAACTCAACTGCTCTCCT...GAGCAGCTTACTGAGGACATCAGAATTCTCTGCCCCTGTGTCTACCATTCTTAA
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000199118.2
3UTR-3UTR CAA 90 bp CAAGATATATGCCATCAGAAAGCTGGGGATGGAATGAGTTGTCATCACTCGAATAGAGAGAGGATCCAGTaGAACAGACAATCACATCCT +
Preference number: 3 (lower is better)
Translates to: QDICHQKAGDGMSCHHSNRERIQ*NRQSHP
Trigger: AGGATGTGATTGTCTGTTCAACTGGATCCTCTCTCT...ATTCGAGTGATGACAACTCATTCCATCCCCAGCTTTCTGATGGCATATATCTTG
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000199118.2
3UTR TCA 72 bp ACCTTTTATGTTGAAGAGCAAGAGAGAGGATCCAGTTaGACAGACAATCACATCCTTACCACTAACGCCAAA +
Preference number: 3 (lower is better)
Translates to: TFYVEEQERGSS*TDNHILTTNAK
Trigger: TTTGGCGTTAGTGGTAAGGATGTGATTGTCTGTTCAACTGGATCCTCTCTCTTGCTCTTCAACATAAAAGGT
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000199118.2
3UTR-3UTR CAA 90 bp ATGTCAAGATATATGCCATCAGAAAGCTGGGGATGGAATGAGTTGTCATCACTCACAACCAAAGAGCCATaGTTAAAGGTGACAATGACA +
Preference number: 3 (lower is better)
Translates to: MSRYMPSESWGWNELSSLTTKEP*LKVTMT
Trigger: TGTCATTGTCACCTTTAACAATGGCTCTTTGGTTGT...GAGTGATGACAACTCATTCCATCCCCAGCTTTCTGATGGCATATATCTTGACAT
41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000199118.2
3UTR-3UTR CAA 90 bp ATGTCAAGATATATGCCATCAGAAAGCTGGGGATGGAATGAGTTGTCATCACTCTCTTTAACAGTCATTTaGTTCTGGATCTCTTTCAGC +
Preference number: 3 (lower is better)
Translates to: MSRYMPSESWGWNELSSLSLTVI*FWISFS
Trigger: GCTGAAAGAGATCCAGAACAAAATGACTGTTAAAGA...GAGTGATGACAACTCATTCCATCCCCAGCTTTCTGATGGCATATATCTTGACAT
40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000199118.2
3UTR TCA 72 bp GTCAAGATATATGCCATCAGAAAGCTGGGGATGGAATaGGTTGTCATCACTCGAATTATGCTCATATCATCA +
Preference number: 3 (lower is better)
Translates to: VKIYAIRKLGME*VVITRIMLISS
Trigger: TGATGATATGAGCATAATTCGAGTGATGACAACTCATTCCATCCCCAGCTTTCTGATGGCATATATCTTGAC
40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000199118.2
3UTR GCA 72 bp ACCCACTCAGTTTTAAAGATCAGATGTCAAGATATATaGCATCAGAAAGCTGGGGATGGAATGAGTTGTCAT +
Preference number: 3 (lower is better)
Translates to: THSVLKIRCQDI*HQKAGDGMSCH
Trigger: ATGACAACTCATTCCATCCCCAGCTTTCTGATGGCATATATCTTGACATCTGATCTTTAAAACTGAGTGGGT
40% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000199118.2
3UTR CCA 72 bp AGCTTCATATCAAATGTGATAAACTTTGTGATCTTTTaGGTGCGACGTATGGACATCAGGGTTATCCTGTCT +
Preference number: 3 (lower is better)
Translates to: SFISNVINFVIF*VRRMDIRVILS
Trigger: AGACAGGATAACCCTGATGTCCATACGTCGCACCCAAAAGATCACAAAGTTTATCACATTTGATATGAAGCT
40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000199118.2
3UTR CCA 72 bp CAGATGTCAAGATATATGCCATCAGAAAGCTGGGGATaGAATGAGTTGTCATCACTCGAATTATGCTCATAT +
Preference number: 3 (lower is better)
Translates to: QMSRYMPSESWG*NELSSLELCSY
Trigger: ATATGAGCATAATTCGAGTGATGACAACTCATTCCATCCCCAGCTTTCTGATGGCATATATCTTGACATCTG
40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000199118.2
3UTR CCA 72 bp AAAGATCAGATGTCAAGATATATGCCATCAGAAAGCTaGGGATGGAATGAGTTGTCATCACTCGAATTATGC +
Preference number: 3 (lower is better)
Translates to: KDQMSRYMPSES*GWNELSSLELC
Trigger: GCATAATTCGAGTGATGACAACTCATTCCATCCCCAGCTTTCTGATGGCATATATCTTGACATCTGATCTTT
40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000199118.2
3UTR CAA 72 bp CCGGAGATATCACCTATCAAGACCATCGGGCCATCCTaGGTAAAGACAGCTTTCAGCAATTTACATGGAGAT +
Preference number: 4 (lower is better)
Translates to: PEISPIKTIGPS*VKTAFSNLHGD
Trigger: ATCTCCATGTAAATTGCTGAAAGCTGTCTTTACCAAGGATGGCCCGATGGTCTTGATAGGTGATATCTCCGG
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000199118.2
3UTR CAA 72 bp CAGCTTCATATCAAATGTGATAAACTTTGTGATCTTTaGGGTGCGACGTATGGACATCAGGGTTATCCTGTC +
Preference number: 4 (lower is better)
Translates to: QLHIKCDKLCDL*GATYGHQGYPV
Trigger: GACAGGATAACCCTGATGTCCATACGTCGCACCCAAAAGATCACAAAGTTTATCACATTTGATATGAAGCTG
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000199118.2
CDS-3UTR TCA 90 bp AGTTTTAAAGATCAGATGTCAAGATATATGCCATCAGAAAGCTGGGGATGGAATGTCAAAACACCCTCCTaGATATCCCAGGTAGAAATC +
Preference number: 4 (lower is better)
Translates to: SFKDQMSRYMPSESWGWNVKTPS*ISQVEI
Trigger: GATTTCTACCTGGGATATTCAGGAGGGTGTTTTGAC...ATTCCATCCCCAGCTTTCTGATGGCATATATCTTGACATCTGATCTTTAAAACT
40% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 1 transcripts:
ENSMUST00000199118.2
3UTR CAA 72 bp AGATATATGCCATCAGAAAGCTGGGGATGGAATGAGTaGTCATCACTCGAATTATGCTCATATCATCACATA +
Preference number: 4 (lower is better)
Translates to: RYMPSESWGWNE*SSLELCSYHHI
Trigger: TATGTGATGATATGAGCATAATTCGAGTGATGACAACTCATTCCATCCCCAGCTTTCTGATGGCATATATCT
39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000199118.2
CDS TCA 90 bp ATACCGACTTGCTGTACTGGGCTTACCCAGGTCAAAACACCCTCCTaGATATCCCAGGTAGAAATCCTGTTCACAGAAGTCACCATACAG +
Preference number: 5 (lower is better)
Translates to: IPTCCTGLTQVKTPS*ISQVEILFTEVTIQ
Trigger: CTGTATGGTGACTTCTGTGAACAGGATTTCTACCTGGGATATTCAGGAGGGTGTTTTGACCTGGGTAAGCCCAGTACAGCAAGTCGGTAT
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000061456.8
ENSMUST00000199102.2
ENSMUST00000199118.2
CDS CAA 72 bp TGGATGTGCCCGAACTCCTCCATAGGACATCACTGCTaGCAAGTTCATTCCAGTCCTTGTTCACTTGGGCAG +
Preference number: 6 (lower is better)
Translates to: WMCPNSSIGHHC*QVHSSPCSLGQ
Trigger: CTGCCCAAGTGAACAAGGACTGGAATGAACTTGCAAGCAGTGATGTCCTATGGAGGAGTTCGGGCACATCCA
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000199118.2
CDS GCA 72 bp ACATGGATGTGCCCGAACTCCTCCATAGGACATCACTaGTTGCAAGTTCATTCCAGTCCTTGTTCACTTGGG +
Preference number: 6 (lower is better)
Translates to: TWMCPNSSIGHH*LQVHSSPCSLG
Trigger: CCCAAGTGAACAAGGACTGGAATGAACTTGCAAGCAGTGATGTCCTATGGAGGAGTTCGGGCACATCCATGT
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000199118.2
CDS TCA 72 bp TGCTGTACTGGGCTTACCCAGGTCAAAACACCCTCCTaGATATCCCAGGTAGAAATCCTGTTCACAGAAGTC +
Preference number: 6 (lower is better)
Translates to: CCTGLTQVKTPS*ISQVEILFTEV
Trigger: GACTTCTGTGAACAGGATTTCTACCTGGGATATTCAGGAGGGTGTTTTGACCTGGGTAAGCCCAGTACAGCA
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000061456.8
ENSMUST00000199102.2
ENSMUST00000199118.2
CDS CAA 72 bp GAAATCTTCTCGAATTGCCCGGGACTTGGCATGTTCTaGCCATGTTCGGGAAACGAAGAACTCCTTCCATGT +
Preference number: 6 (lower is better)
Translates to: EIFSNCPGLGMF*PCSGNEELLPC
Trigger: ACATGGAAGGAGTTCTTCGTTTCCCGAACATGGCAAGAACATGCCAAGTCCCGGGCAATTCGAGAAGATTTC
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000061456.8
CDS CAA 90 bp CTTGTAAATGAAATCTTCTCGAATTGCCCGGGACTTGGCATGTTCTaGCCATGTTCGGGAAACGAAGAACTCCTTCCATGTCTCTGTGCC +
Preference number: 6 (lower is better)
Translates to: LVNEIFSNCPGLGMF*PCSGNEELLPCLCA
Trigger: GGCACAGAGACATGGAAGGAGTTCTTCGTTTCCCGAACATGGCAAGAACATGCCAAGTCCCGGGCAATTCGAGAAGATTTCATTTACAAG
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000061456.8
CDS GCA 72 bp ATCTCTTCTGACACAACCTCCTCCATAGGACATCACTaGTTGCAAGTTCATTCCAGTCCTTGTTCACTTGGG +
Preference number: 6 (lower is better)
Translates to: ISSDTTSSIGHH*LQVHSSPCSLG
Trigger: CCCAAGTGAACAAGGACTGGAATGAACTTGCAAGCAGTGATGTCCTATGGAGGAGGTTGTGTCAGAAGAGAT
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000061456.8
CDS GCA 72 bp CGCAGGAATTTCCTTGTAAATGAAATCTTCTCGAATTaGCCGGGACTTGGCATGTTCTTGCCATGTTCGGGA +
Preference number: 6 (lower is better)
Translates to: RRNFLVNEIFSN*PGLGMFLPCSG
Trigger: TCCCGAACATGGCAAGAACATGCCAAGTCCCGGGCAATTCGAGAAGATTTCATTTACAAGGAAATTCCTGCG
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000061456.8