Pregenerated sensors for FBXW10 (Mus musculus)
Ensembl gene IDs: ENSMUSG00000090173Ensembl transcript IDs: ENSMUST00000036085.11, ENSMUST00000150989.8, ENSMUST00000176577.2, ENSMUST00000177336.8
Found 67 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR TCA 90 bp | GAGAACTCCTGTTTACTAGACACAGAGTCCTTCAGGCTGTGCCCCTaGATGGTAGACCTGGAATGCTCATCCCCGAGGCTGGTCTCTTCC | + |
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Preference number: 1 (lower is better) Translates to: ENSCLLDTESFRLCP*MVDLECSSPRLVSS Trigger: GGAAGAGACCAGCCTCGGGGATGAGCATTCCAGGTCTACCATTCAGGGGCACAGCCTGAAGGACTCTGTGTCTAGTAAACAGGAGTTCTC 54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000177336.8 |
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| 3UTR-3UTR TCA 90 bp | AAGCTGTCAGAGACCTTGGGACGGATAAGACTGGGCTGGGGTACAGTGGCCTGGGTGAACCCGGGACTTTaGGAACTCCTGTTTACTAGA | + |
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Preference number: 2 (lower is better) Translates to: KLSETLGRIRLGWGTVAWVNPGL*ELLFTR Trigger: TCTAGTAAACAGGAGTTCTCAAAGTCCCGGGTTCAC...CCAGGCCACTGTACCCCAGCCCAGTCTTATCCGTCCCAAGGTCTCTGACAGCTT 54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000177336.8 |
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| 3UTR-3UTR TCA 90 bp | AAGCTGTCAGAGACCTTGGGACGGATAAGACTGGGCTGGGGTACAGTGGCCTGGTTGGTTTGTTTCAGGTaGACCCGGGACTTTGAGAAC | + |
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Preference number: 2 (lower is better) Translates to: KLSETLGRIRLGWGTVAWLVCFR*TRDFEN Trigger: GTTCTCAAAGTCCCGGGTTCACCTGAAACAAACCAA...CCAGGCCACTGTACCCCAGCCCAGTCTTATCCGTCCCAAGGTCTCTGACAGCTT 54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000177336.8 |
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| 3UTR-3UTR CCA 90 bp | GCTTTGCTGGCTTTTCCTGGGTCGACCTCTTTAGTGGATACACTGGCTTCATATGCTCATCCCCGAGGCTaGTCTCTTCCCTCTCCTCCT | + |
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Preference number: 2 (lower is better) Translates to: ALLAFPGSTSLVDTLASYAHPRG*SLPSPP Trigger: AGGAGGAGAGGGAAGAGACCAGCCTCGGGGATGAGC...ATATGAAGCCAGTGTATCCACTAAAGAGGTCGACCCAGGAAAAGCCAGCAAAGC 53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000177336.8 |
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| 3UTR-3UTR TCA 90 bp | GCTTTGCTGGCTTTTCCTGGGTCGACCTCTTTAGTGGATACACTGGCTTCATATTCACAGTCATCAGCATaGACCCAGTGTTCATTCTCA | + |
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Preference number: 2 (lower is better) Translates to: ALLAFPGSTSLVDTLASYSQSSA*TQCSFS Trigger: TGAGAATGAACACTGGGTTCATGCTGATGACTGTGA...ATATGAAGCCAGTGTATCCACTAAAGAGGTCGACCCAGGAAAAGCCAGCAAAGC 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000177336.8 |
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| 3UTR TCA 72 bp | TGTTTACTAGACACAGAGTCCTTCAGGCTGTGCCCCTaGATGGTAGACCTGGAATGCTCATCCCCGAGGCTG | + |
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Preference number: 3 (lower is better) Translates to: CLLDTESFRLCP*MVDLECSSPRL Trigger: CAGCCTCGGGGATGAGCATTCCAGGTCTACCATTCAGGGGCACAGCCTGAAGGACTCTGTGTCTAGTAAACA 54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000177336.8 |
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| 3UTR-3UTR CAA 90 bp | AAGCTGTCAGAGACCTTGGGACGGATAAGACTGGGCTGGGGTACAGTGGCCTGGATTTCAAGGGGAATGTaGGTTTGTCTCACACCTGTA | + |
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Preference number: 3 (lower is better) Translates to: KLSETLGRIRLGWGTVAWISRGM*VCLTPV Trigger: TACAGGTGTGAGACAAACCAACATTCCCCTTGAAAT...CCAGGCCACTGTACCCCAGCCCAGTCTTATCCGTCCCAAGGTCTCTGACAGCTT 52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000177336.8 |
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| CDS-3UTR CCA 90 bp | AAGCTGTCAGAGACCTTGGGACGGATAAGACTGGGCTGGGGTACAGTGGCCTGGTCCACCTTGACCTGCTaGGCCAGAGTGGCCCAGTGC | + |
|
Preference number: 4 (lower is better) Translates to: KLSETLGRIRLGWGTVAWSTLTC*ARVAQC Trigger: GCACTGGGCCACTCTGGCCCAGCAGGTCAAGGTGGA...CCAGGCCACTGTACCCCAGCCCAGTCTTATCCGTCCCAAGGTCTCTGACAGCTT 61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000177336.8 |
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| 3UTR CAA 72 bp | GTCAAGTGCTCGTCACCCCTTAAGCTGTCAGAGACCTaGGGACGGATAAGACTGGGCTGGGGTACAGTGGCC | + |
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Preference number: 4 (lower is better) Translates to: VKCSSPLKLSET*GRIRLGWGTVA Trigger: GGCCACTGTACCCCAGCCCAGTCTTATCCGTCCCAAGGTCTCTGACAGCTTAAGGGGTGACGAGCACTTGAC 58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000177336.8 |
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| CDS-3UTR TCA 90 bp | AAGCTGTCAGAGACCTTGGGACGGATAAGACTGGGCTGGGGTACAGTGGCCTGGACTGCCCCAAGATGCTaGCTAGAAATCTCCTCTGGG | + |
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Preference number: 4 (lower is better) Translates to: KLSETLGRIRLGWGTVAWTAPRC*LEISSG Trigger: CCCAGAGGAGATTTCTAGTCAGCATCTTGGGGCAGT...CCAGGCCACTGTACCCCAGCCCAGTCTTATCCGTCCCAAGGTCTCTGACAGCTT 57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000177336.8 |
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| CDS-3UTR GCA 90 bp | CTGAATGGTAGACCTGGAATGCTCATCCCCGAGGCTGGTCTCTTCCCTCTCCTCGCCAGAGTGGCCCAGTaGTGGCTTACAAAGATACAC | + |
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Preference number: 4 (lower is better) Translates to: LNGRPGMLIPEAGLFPLLARVAQ*WLTKIH Trigger: GTGTATCTTTGTAAGCCAGCACTGGGCCACTCTGGC...GAGGAGAGGGAAGAGACCAGCCTCGGGGATGAGCATTCCAGGTCTACCATTCAG 56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000177336.8 |
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| CDS-3UTR TCA 90 bp | AAGCTGTCAGAGACCTTGGGACGGATAAGACTGGGCTGGGGTACAGTGGCCTGGTCAGGAGTGTCATCATaGAGGCCTGAAATACTGTTC | + |
|
Preference number: 4 (lower is better) Translates to: KLSETLGRIRLGWGTVAWSGVSS*RPEILF Trigger: GAACAGTATTTCAGGCCTTCATGATGACACTCCTGA...CCAGGCCACTGTACCCCAGCCCAGTCTTATCCGTCCCAAGGTCTCTGACAGCTT 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000177336.8 |
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| CDS-3UTR TCA 90 bp | AAGCTGTCAGAGACCTTGGGACGGATAAGACTGGGCTGGGGTACAGTGGCCTGGAAATCTGGTTCTGAATaGAGGAGTGCATGGACTGGT | + |
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Preference number: 4 (lower is better) Translates to: KLSETLGRIRLGWGTVAWKSGSE*RSAWTG Trigger: ACCAGTCCATGCACTCCTTCATTCAGAACCAGATTT...CCAGGCCACTGTACCCCAGCCCAGTCTTATCCGTCCCAAGGTCTCTGACAGCTT 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000177336.8 |
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| CDS-3UTR TCA 90 bp | AAGATAGGTTCTTGGTTTGTTTCAGGTGAACCCGGGACTTTGAGAACTCCTGTTTGGACTGGTCCACCTTaGCCTGCTGGGCCAGAGTGG | + |
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Preference number: 4 (lower is better) Translates to: KIGSWFVSGEPGTLRTPVWTGPP*PAGPEW Trigger: CCACTCTGGCCCAGCAGGTCAAGGTGGACCAGTCCA...AACAGGAGTTCTCAAAGTCCCGGGTTCACCTGAAACAAACCAAGAACCTATCTT 52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000177336.8 |
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| CDS-3UTR GCA 90 bp | AAGCTGTCAGAGACCTTGGGACGGATAAGACTGGGCTGGGGTACAGTGGCCTGGCAAGAGAGTATAATTTaGCTTAGTTCGGTGGGTGCT | + |
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Preference number: 4 (lower is better) Translates to: KLSETLGRIRLGWGTVAWQESII*LSSVGA Trigger: AGCACCCACCGAACTAAGGCAAATTATACTCTCTTG...CCAGGCCACTGTACCCCAGCCCAGTCTTATCCGTCCCAAGGTCTCTGACAGCTT 52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000177336.8 |
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| CDS-3UTR GCA 90 bp | AAGATAGGTTCTTGGTTTGTTTCAGGTGAACCCGGGACTTTGAGAACTCCTGTTTGGTCCACCTTGACCTaGTGGGCCAGAGTGGCCCAG | + |
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Preference number: 4 (lower is better) Translates to: KIGSWFVSGEPGTLRTPVWSTLT*WARVAQ Trigger: CTGGGCCACTCTGGCCCAGCAGGTCAAGGTGGACCA...AACAGGAGTTCTCAAAGTCCCGGGTTCACCTGAAACAAACCAAGAACCTATCTT 52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000177336.8 |
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| CDS-3UTR CCA 90 bp | GCTTTGCTGGCTTTTCCTGGGTCGACCTCTTTAGTGGATACACTGGCTTCATATATGTTGCTGTCCGTGTaGGCCACCATCCTCTGGCGT | + |
|
Preference number: 4 (lower is better) Translates to: ALLAFPGSTSLVDTLASYMLLSV*ATILWR Trigger: ACGCCAGAGGATGGTGGCCCACACGGACAGCAACAT...ATATGAAGCCAGTGTATCCACTAAAGAGGTCGACCCAGGAAAAGCCAGCAAAGC 52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000177336.8 |
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| CDS-3UTR GCA 90 bp | AAGCTGTCAGAGACCTTGGGACGGATAAGACTGGGCTGGGGTACAGTGGCCTGGTTGTCTGAGCTGTACTaGCACTTGACATTTTCAAAC | + |
|
Preference number: 4 (lower is better) Translates to: KLSETLGRIRLGWGTVAWLSELY*HLTFSN Trigger: GTTTGAAAATGTCAAGTGGCAGTACAGCTCAGACAA...CCAGGCCACTGTACCCCAGCCCAGTCTTATCCGTCCCAAGGTCTCTGACAGCTT 51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000177336.8 |
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| CDS-3UTR CCA 90 bp | ATAGGTTCTTGGTTTGTTTCAGGTGAACCCGGGACTTTGAGAACTCCTGTTTACCCTGCTGGGCCAGAGTaGCCCAGTGCTGGCTTACAA | + |
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Preference number: 4 (lower is better) Translates to: IGSWFVSGEPGTLRTPVYPAGPE*PSAGLQ Trigger: TTGTAAGCCAGCACTGGGCCACTCTGGCCCAGCAGG...GTAAACAGGAGTTCTCAAAGTCCCGGGTTCACCTGAAACAAACCAAGAACCTAT 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000177336.8 |
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| CDS-3UTR CCA 90 bp | GCTTTGCTGGCTTTTCCTGGGTCGACCTCTTTAGTGGATACACTGGCTTCATATAAGGAGTGCATGGACTaGTCCACCTTGACCTGCTGG | + |
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Preference number: 4 (lower is better) Translates to: ALLAFPGSTSLVDTLASYKECMD*STLTCW Trigger: CCAGCAGGTCAAGGTGGACCAGTCCATGCACTCCTT...ATATGAAGCCAGTGTATCCACTAAAGAGGTCGACCCAGGAAAAGCCAGCAAAGC 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000177336.8 |
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| CDS-3UTR TCA 90 bp | ATAGGTTCTTGGTTTGTTTCAGGTGAACCCGGGACTTTGAGAACTCCTGTTTACGACAGGAGTTGGACATaGTCCAGGCTCAGCAGCAGG | + |
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Preference number: 4 (lower is better) Translates to: IGSWFVSGEPGTLRTPVYDRSWT*SRLSSR Trigger: CCTGCTGCTGAGCCTGGATCATGTCCAACTCCTGTC...GTAAACAGGAGTTCTCAAAGTCCCGGGTTCACCTGAAACAAACCAAGAACCTAT 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000177336.8 |
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| CDS-3UTR CCA 90 bp | GCTTTGCTGGCTTTTCCTGGGTCGACCTCTTTAGTGGATACACTGGCTTCATATGATCATCTCCCAGCCTaGACATGCCCCCTTTTCCAA | + |
|
Preference number: 4 (lower is better) Translates to: ALLAFPGSTSLVDTLASYDHLPA*TCPLFQ Trigger: TTGGAAAAGGGGGCATGTCCAGGCTGGGAGATGATC...ATATGAAGCCAGTGTATCCACTAAAGAGGTCGACCCAGGAAAAGCCAGCAAAGC 50% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 1 transcripts: ENSMUST00000177336.8 |
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| 3UTR CAA 72 bp | GAATCGGTCAGGTGTCATAGGGACTTTCCAGAGCTTTaGCAAGGGATGACTGACTTCGCCTACAGGAGTTTC | + |
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Preference number: 4 (lower is better) Translates to: ESVRCHRDFPEL*QGMTDFAYRSF Trigger: GAAACTCCTGTAGGCGAAGTCAGTCATCCCTTGCAAAAGCTCTGGAAAGTCCCTATGACACCTGACCGATTC 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000177336.8 |
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| CDS-3UTR TCA 90 bp | GCTTTGCTGGCTTTTCCTGGGTCGACCTCTTTAGTGGATACACTGGCTTCATATCAATGTAGGTCTCACTaGTCTTGGCAGCCAAGATGG | + |
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Preference number: 4 (lower is better) Translates to: ALLAFPGSTSLVDTLASYQCRSH*SWQPRW Trigger: CCATCTTGGCTGCCAAGATCAGTGAGACCTACATTG...ATATGAAGCCAGTGTATCCACTAAAGAGGTCGACCCAGGAAAAGCCAGCAAAGC 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000177336.8 |
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| CDS-3UTR CCA 90 bp | GCTTTGCTGGCTTTTCCTGGGTCGACCTCTTTAGTGGATACACTGGCTTCATATAGAGTGGCCCAGTGCTaGCTTACAAAGATACACCTG | + |
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Preference number: 4 (lower is better) Translates to: ALLAFPGSTSLVDTLASYRVAQC*LTKIHL Trigger: CAGGTGTATCTTTGTAAGCCAGCACTGGGCCACTCT...ATATGAAGCCAGTGTATCCACTAAAGAGGTCGACCCAGGAAAAGCCAGCAAAGC 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000177336.8 |
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| CDS-3UTR CCA 90 bp | GCTTTGCTGGCTTTTCCTGGGTCGACCTCTTTAGTGGATACACTGGCTTCATATTCCGATTGGATGATATaGCCATTAGGTCTCCCCCGT | + |
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Preference number: 4 (lower is better) Translates to: ALLAFPGSTSLVDTLASYSDWMI*PLGLPR Trigger: ACGGGGGAGACCTAATGGCCATATCATCCAATCGGA...ATATGAAGCCAGTGTATCCACTAAAGAGGTCGACCCAGGAAAAGCCAGCAAAGC 49% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000177336.8 |
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| CDS-3UTR GCA 90 bp | AAGATAGGTTCTTGGTTTGTTTCAGGTGAACCCGGGACTTTGAGAACTCCTGTTTTCACAGCTCCCTCGTaGCCAGTGAGAGTCTTTTGC | + |
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Preference number: 4 (lower is better) Translates to: KIGSWFVSGEPGTLRTPVFTAPS*PVRVFC Trigger: GCAAAAGACTCTCACTGGGCACGAGGGAGCTGTGAA...AACAGGAGTTCTCAAAGTCCCGGGTTCACCTGAAACAAACCAAGAACCTATCTT 48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000177336.8 |
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| CDS-3UTR CCA 90 bp | AAGATAGGTTCTTGGTTTGTTTCAGGTGAACCCGGGACTTTGAGAACTCCTGTTACACGGGGACCCAGTTaGGTCCCTTTTCACAACGAA | + |
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Preference number: 4 (lower is better) Translates to: KIGSWFVSGEPGTLRTPVTRGPS*VPFHNE Trigger: TTCGTTGTGAAAAGGGACCCAACTGGGTCCCCGTGT...AACAGGAGTTCTCAAAGTCCCGGGTTCACCTGAAACAAACCAAGAACCTATCTT 48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000177336.8 |
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| CDS-3UTR GCA 90 bp | GCTTTGCTGGCTTTTCCTGGGTCGACCTCTTTAGTGGATACACTGGCTTCATATCACCTGTCCATCTTTTaGTCCAGATACAAGCCTGTT | + |
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Preference number: 4 (lower is better) Translates to: ALLAFPGSTSLVDTLASYHLSIF*SRYKPV Trigger: AACAGGCTTGTATCTGGAGCAAAAGATGGACAGGTG...ATATGAAGCCAGTGTATCCACTAAAGAGGTCGACCCAGGAAAAGCCAGCAAAGC 47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000177336.8 |
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| CDS-3UTR TCA 90 bp | ATAGGTTCTTGGTTTGTTTCAGGTGAACCCGGGACTTTGAGAACTCCTGTTTACGCTCCTTGGTCTGCATaGTATCTAGAAGGTGGATCT | + |
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Preference number: 4 (lower is better) Translates to: IGSWFVSGEPGTLRTPVYAPWSA*YLEGGS Trigger: AGATCCACCTTCTAGATATCATGCAGACCAAGGAGC...GTAAACAGGAGTTCTCAAAGTCCCGGGTTCACCTGAAACAAACCAAGAACCTAT 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000177336.8 |
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| CDS-3UTR CCA 90 bp | ATAGGTTCTTGGTTTGTTTCAGGTGAACCCGGGACTTTGAGAACTCCTGTTTACATGAAGTCCTTCCCCTaGGTGGTCTCTAGGATATTC | + |
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Preference number: 4 (lower is better) Translates to: IGSWFVSGEPGTLRTPVYMKSFP*VVSRIF Trigger: GAATATCCTAGAGACCACCCAGGGGAAGGACTTCAT...GTAAACAGGAGTTCTCAAAGTCCCGGGTTCACCTGAAACAAACCAAGAACCTAT 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000177336.8 |
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| CDS-3UTR CCA 90 bp | ATAGGTTCTTGGTTTGTTTCAGGTGAACCCGGGACTTTGAGAACTCCTGTTTACACTAGAAATCTCCTCTaGGATATGTCGTTGACCCTC | + |
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Preference number: 4 (lower is better) Translates to: IGSWFVSGEPGTLRTPVYTRNLL*DMSLTL Trigger: GAGGGTCAACGACATATCCCAGAGGAGATTTCTAGT...GTAAACAGGAGTTCTCAAAGTCCCGGGTTCACCTGAAACAAACCAAGAACCTAT 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000177336.8 |
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| CDS-3UTR TCA 90 bp | GCTTTGCTGGCTTTTCCTGGGTCGACCTCTTTAGTGGATACACTGGCTTCATATTCAGACAGTTCCCATTaGGGAAATTATAAATTCGGA | + |
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Preference number: 4 (lower is better) Translates to: ALLAFPGSTSLVDTLASYSDSSH*GNYKFG Trigger: TCCGAATTTATAATTTCCTCAATGGGAACTGTCTGA...ATATGAAGCCAGTGTATCCACTAAAGAGGTCGACCCAGGAAAAGCCAGCAAAGC 43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000177336.8 |
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| CDS-3UTR GCA 90 bp | ATAGGTTCTTGGTTTGTTTCAGGTGAACCCGGGACTTTGAGAACTCCTGTTTACTACAGGCTATTTAACTaGCCCAAGATGCTGACTAGA | + |
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Preference number: 4 (lower is better) Translates to: IGSWFVSGEPGTLRTPVYYRLFN*PKMLTR Trigger: TCTAGTCAGCATCTTGGGGCAGTTAAATAGCCTGTA...GTAAACAGGAGTTCTCAAAGTCCCGGGTTCACCTGAAACAAACCAAGAACCTAT 43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000177336.8 |
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| CDS-3UTR GCA 90 bp | AAGATAGGTTCTTGGTTTGTTTCAGGTGAACCCGGGACTTTGAGAACTCCTGTTCACCTGTTCAGACTGTaGTTATCCAGCATTCTTAGA | + |
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Preference number: 4 (lower is better) Translates to: KIGSWFVSGEPGTLRTPVHLFRL*LSSILR Trigger: TCTAAGAATGCTGGATAAGCACAGTCTGAACAGGTG...AACAGGAGTTCTCAAAGTCCCGGGTTCACCTGAAACAAACCAAGAACCTATCTT 43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000177336.8 |
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| CDS-3UTR CCA 90 bp | ATAGGTTCTTGGTTTGTTTCAGGTGAACCCGGGACTTTGAGAACTCCTGTTTACCATCATCTACTATCTTaGGCACTGGGATTGAGACTT | + |
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Preference number: 4 (lower is better) Translates to: IGSWFVSGEPGTLRTPVYHHLLS*ALGLRL Trigger: AAGTCTCAATCCCAGTGCCCAAGATAGTAGATGATG...GTAAACAGGAGTTCTCAAAGTCCCGGGTTCACCTGAAACAAACCAAGAACCTAT 43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000177336.8 |
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| CDS-3UTR CCA 90 bp | AAGATAGGTTCTTGGTTTGTTTCAGGTGAACCCGGGACTTTGAGAACTCCTGTTTGTCTATTCATTTCATaGATACACTGGAGCGAACTC | + |
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Preference number: 4 (lower is better) Translates to: KIGSWFVSGEPGTLRTPVCLFIS*IHWSEL Trigger: GAGTTCGCTCCAGTGTATCCATGAAATGAATAGACA...AACAGGAGTTCTCAAAGTCCCGGGTTCACCTGAAACAAACCAAGAACCTATCTT 42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000177336.8 |
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| CDS-3UTR CCA 90 bp | ATAGGTTCTTGGTTTGTTTCAGGTGAACCCGGGACTTTGAGAACTCCTGTTTACTTGACATTTTCAAACTaGAACACGAGAATGTTGCTG | + |
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Preference number: 4 (lower is better) Translates to: IGSWFVSGEPGTLRTPVYLTFSN*NTRMLL Trigger: CAGCAACATTCTCGTGTTCCAGTTTGAAAATGTCAA...GTAAACAGGAGTTCTCAAAGTCCCGGGTTCACCTGAAACAAACCAAGAACCTAT 41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000177336.8 |
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| CDS-3UTR CCA 90 bp | ATAGGTTCTTGGTTTGTTTCAGGTGAACCCGGGACTTTGAGAACTCCTGTTTACTATTACCTAAATGTTTaGACATTGGGAATGACACAG | + |
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Preference number: 4 (lower is better) Translates to: IGSWFVSGEPGTLRTPVYYYLNV*TLGMTQ Trigger: CTGTGTCATTCCCAATGTCCAAACATTTAGGTAATA...GTAAACAGGAGTTCTCAAAGTCCCGGGTTCACCTGAAACAAACCAAGAACCTAT 40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000177336.8 |
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| CDS-3UTR CAA 90 bp | AAGCTGTCAGAGACCTTGGGACGGATAAGACTGGGCTGGGGTACAGTGGCCTGGCACACGGGGACCCAGTaGGGTCCCTTTTCACAACGA | + |
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Preference number: 5 (lower is better) Translates to: KLSETLGRIRLGWGTVAWHTGTQ*GPFSQR Trigger: TCGTTGTGAAAAGGGACCCAACTGGGTCCCCGTGTG...CCAGGCCACTGTACCCCAGCCCAGTCTTATCCGTCCCAAGGTCTCTGACAGCTT 59% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 1 transcripts: ENSMUST00000177336.8 |
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| CDS-3UTR CAA 90 bp | CTGAATGGTAGACCTGGAATGCTCATCCCCGAGGCTGGTCTCTTCCCTCTCCTCAGGCTCAGCAGCAGGTaGCACGGATCATCTCCCAGC | + |
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Preference number: 5 (lower is better) Translates to: LNGRPGMLIPEAGLFPLLRLSSR*HGSSPS Trigger: GCTGGGAGATGATCCGTGCAACCTGCTGCTGAGCCT...GAGGAGAGGGAAGAGACCAGCCTCGGGGATGAGCATTCCAGGTCTACCATTCAG 59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000177336.8 |
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| CDS-3UTR CAA 90 bp | CTGAATGGTAGACCTGGAATGCTCATCCCCGAGGCTGGTCTCTTCCCTCTCCTCATGGACTGGTCCACCTaGACCTGCTGGGCCAGAGTG | + |
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Preference number: 5 (lower is better) Translates to: LNGRPGMLIPEAGLFPLLMDWST*TCWARV Trigger: CACTCTGGCCCAGCAGGTCAAGGTGGACCAGTCCAT...GAGGAGAGGGAAGAGACCAGCCTCGGGGATGAGCATTCCAGGTCTACCATTCAG 59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000177336.8 |
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| CDS CCA 90 bp | ATATTGTCCTCCTCAGACAGGAAGAGAGCCCTGACGCTGCCGGCATaGCCTCGGAACTCGATGGGCAGCTCCTTGGTCTGCATGATATCT | + |
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Preference number: 5 (lower is better) Translates to: ILSSSDRKRALTLPA*PRNSMGSSLVCMIS Trigger: AGATATCATGCAGACCAAGGAGCTGCCCATCGAGTTCCGAGGCCATGCCGGCAGCGTCAGGGCTCTCTTCCTGTCTGAGGAGGACAATAT 57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 4 transcripts: ENSMUST00000036085.11 ENSMUST00000150989.8 ENSMUST00000176577.2 ENSMUST00000177336.8 |
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| CDS GCA 90 bp | ACTGGAACACGAGAATGTTGCTGTCCGTGTGGGCCACCATCCTGTTaGCCTGATAAAAGAAGGATAGCACGGGGTCACCTCTGGCGTCGA | + |
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Preference number: 5 (lower is better) Translates to: TGTRECCCPCGPPSC*PDKRRIARGHLWRR Trigger: TCGACGCCAGAGGTGACCCCGTGCTATCCTTCTTTTATCAGGGCAACAGGATGGTGGCCCACACGGACAGCAACATTCTCGTGTTCCAGT 56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000036085.11 ENSMUST00000150989.8 |
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| CDS GCA 90 bp | ACCCAGAAGACAGGAGTTGGACATGATCCAGGCTCAGCAGCAGGTTaGACGGATCATCTCCCAGCCTGGACATGCCCCCTTTTCCAAAAA | + |
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Preference number: 5 (lower is better) Translates to: TQKTGVGHDPGSAAG*TDHLPAWTCPLFQK Trigger: TTTTTGGAAAAGGGGGCATGTCCAGGCTGGGAGATGATCCGTGCAACCTGCTGCTGAGCCTGGATCATGTCCAACTCCTGTCTTCTGGGT 54% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 4 transcripts: ENSMUST00000036085.11 ENSMUST00000150989.8 ENSMUST00000176577.2 ENSMUST00000177336.8 |
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| CDS-3UTR CAA 90 bp | CTGAATGGTAGACCTGGAATGCTCATCCCCGAGGCTGGTCTCTTCCCTCTCCTCTCGATGGGCAGCTCCTaGGTCTGCATGATATCTAGA | + |
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Preference number: 5 (lower is better) Translates to: LNGRPGMLIPEAGLFPLLSMGSS*VCMISR Trigger: TCTAGATATCATGCAGACCAAGGAGCTGCCCATCGA...GAGGAGAGGGAAGAGACCAGCCTCGGGGATGAGCATTCCAGGTCTACCATTCAG 54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000177336.8 |
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| CDS-3UTR CAA 90 bp | AAGATAGGTTCTTGGTTTGTTTCAGGTGAACCCGGGACTTTGAGAACTCCTGTTGGGAATGACACAGGTTaGGGTCTAGCTGCCCAAGAG | + |
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Preference number: 5 (lower is better) Translates to: KIGSWFVSGEPGTLRTPVGNDTG*GLAAQE Trigger: CTCTTGGGCAGCTAGACCCAAACCTGTGTCATTCCC...AACAGGAGTTCTCAAAGTCCCGGGTTCACCTGAAACAAACCAAGAACCTATCTT 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000177336.8 |
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| CDS-3UTR CAA 90 bp | CTGAATGGTAGACCTGGAATGCTCATCCCCGAGGCTGGTCTCTTCCCTCTCCTCAGTTGTAATCAGTCTTaGTTCTCAGTTTCCACTTCT | + |
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Preference number: 5 (lower is better) Translates to: LNGRPGMLIPEAGLFPLLSCNQS*FSVSTS Trigger: AGAAGTGGAAACTGAGAACAAAGACTGATTACAACT...GAGGAGAGGGAAGAGACCAGCCTCGGGGATGAGCATTCCAGGTCTACCATTCAG 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000177336.8 |
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| CDS-3UTR CAA 90 bp | GCTTTGCTGGCTTTTCCTGGGTCGACCTCTTTAGTGGATACACTGGCTTCATATCCCCTTTTCCCTCGGTaGTTTCTCTGTCCACATTTT | + |
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Preference number: 5 (lower is better) Translates to: ALLAFPGSTSLVDTLASYPLFPR*FLCPHF Trigger: AAAATGTGGACAGAGAAACAACCGAGGGAAAAGGGG...ATATGAAGCCAGTGTATCCACTAAAGAGGTCGACCCAGGAAAAGCCAGCAAAGC 48% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 1 transcripts: ENSMUST00000177336.8 |
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| CDS-3UTR CAA 90 bp | ATAGGTTCTTGGTTTGTTTCAGGTGAACCCGGGACTTTGAGAACTCCTGTTTACCCACTCAGGAGAATATaGTCCTCCTCAGACAGGAAG | + |
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Preference number: 5 (lower is better) Translates to: IGSWFVSGEPGTLRTPVYPLRRI*SSSDRK Trigger: CTTCCTGTCTGAGGAGGACAATATTCTCCTGAGTGG...GTAAACAGGAGTTCTCAAAGTCCCGGGTTCACCTGAAACAAACCAAGAACCTAT 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000177336.8 |
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| CDS-3UTR CAA 90 bp | GCTTTGCTGGCTTTTCCTGGGTCGACCTCTTTAGTGGATACACTGGCTTCATATCTAAATGTTTGGACATaGGGAATGACACAGGTTTGG | + |
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Preference number: 5 (lower is better) Translates to: ALLAFPGSTSLVDTLASYLNVWT*GMTQVW Trigger: CCAAACCTGTGTCATTCCCAATGTCCAAACATTTAG...ATATGAAGCCAGTGTATCCACTAAAGAGGTCGACCCAGGAAAAGCCAGCAAAGC 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000177336.8 |
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| CDS-3UTR CAA 90 bp | ATAGGTTCTTGGTTTGTTTCAGGTGAACCCGGGACTTTGAGAACTCCTGTTTACGAGCTGTACTGCCACTaGACATTTTCAAACTGGAAC | + |
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Preference number: 5 (lower is better) Translates to: IGSWFVSGEPGTLRTPVYELYCH*TFSNWN Trigger: GTTCCAGTTTGAAAATGTCAAGTGGCAGTACAGCTC...GTAAACAGGAGTTCTCAAAGTCCCGGGTTCACCTGAAACAAACCAAGAACCTAT 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000177336.8 |
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| CDS-3UTR CAA 90 bp | AAGATAGGTTCTTGGTTTGTTTCAGGTGAACCCGGGACTTTGAGAACTCCTGTTGTGAATGATTCTGTTTaGGTCAAACGTGTCAGAGAG | + |
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Preference number: 5 (lower is better) Translates to: KIGSWFVSGEPGTLRTPVVNDSV*VKRVRE Trigger: CTCTCTGACACGTTTGACCAAAACAGAATCATTCAC...AACAGGAGTTCTCAAAGTCCCGGGTTCACCTGAAACAAACCAAGAACCTATCTT 43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000177336.8 |
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| CDS GCA 90 bp | TCTTTGTCCTTGCTCTTCTTTACTTTGTTCTTGTCTGAGCTGTACTaGCACTTGACATTTTCAAACTGGAACACGAGAATGTTGCTGTCC | + |
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Preference number: 5 (lower is better) Translates to: SLSLLFFTLFLSELY*HLTFSNWNTRMLLS Trigger: GGACAGCAACATTCTCGTGTTCCAGTTTGAAAATGTCAAGTGGCAGTACAGCTCAGACAAGAACAAAGTAAAGAAGAGCAAGGACAAAGA 42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000036085.11 ENSMUST00000150989.8 ENSMUST00000176577.2 |
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| CDS GCA 72 bp | ACAGGAGTTGGACATGATCCAGGCTCAGCAGCAGGTTaGACGGATCATCTCCCAGCCTGGACATGCCCCCTT | + |
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Preference number: 6 (lower is better) Translates to: TGVGHDPGSAAG*TDHLPAWTCPL Trigger: AAGGGGGCATGTCCAGGCTGGGAGATGATCCGTGCAACCTGCTGCTGAGCCTGGATCATGTCCAACTCCTGT 58% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 4 transcripts: ENSMUST00000036085.11 ENSMUST00000150989.8 ENSMUST00000176577.2 ENSMUST00000177336.8 |
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| CDS CAA 72 bp | GCACTTCACAGCTCCCTCGTGCCCAGTGAGAGTCTTTaGCAGCTGAGCTGTGACAACGTGCCACACCTTGAC | + |
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Preference number: 6 (lower is better) Translates to: ALHSSLVPSESL*QLSCDNVPHLD Trigger: GTCAAGGTGTGGCACGTTGTCACAGCTCAGCTGCAAAAGACTCTCACTGGGCACGAGGGAGCTGTGAAGTGC 57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 4 transcripts: ENSMUST00000036085.11 ENSMUST00000150989.8 ENSMUST00000176577.2 ENSMUST00000177336.8 |
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| CDS TCA 72 bp | ACAGCTCCCTCGTGCCCAGTGAGAGTCTTTTGCAGCTaGGCTGTGACAACGTGCCACACCTTGACTATGCCT | + |
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Preference number: 6 (lower is better) Translates to: TAPSCPVRVFCS*AVTTCHTLTMP Trigger: AGGCATAGTCAAGGTGTGGCACGTTGTCACAGCTCAGCTGCAAAAGACTCTCACTGGGCACGAGGGAGCTGT 56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 4 transcripts: ENSMUST00000036085.11 ENSMUST00000150989.8 ENSMUST00000176577.2 ENSMUST00000177336.8 |
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| CDS GCA 72 bp | CGAGAATGTTGCTGTCCGTGTGGGCCACCATCCTGTTaGCCTGATAAAAGAAGGATAGCACGGGGTCACCTC | + |
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Preference number: 6 (lower is better) Translates to: RECCCPCGPPSC*PDKRRIARGHL Trigger: GAGGTGACCCCGTGCTATCCTTCTTTTATCAGGGCAACAGGATGGTGGCCCACACGGACAGCAACATTCTCG 56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000036085.11 ENSMUST00000150989.8 |
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| CDS CAA 72 bp | TGCCACTTGACATTTTCAAACTGGAACACGAGAATGTaGCTGTCCGTGTGGGCCACCATCCTCTGGCGTCGA | + |
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Preference number: 6 (lower is better) Translates to: CHLTFSNWNTRM*LSVWATILWRR Trigger: TCGACGCCAGAGGATGGTGGCCCACACGGACAGCAACATTCTCGTGTTCCAGTTTGAAAATGTCAAGTGGCA 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000177336.8 |
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| CDS CAA 72 bp | TGCCACTTGACATTTTCAAACTGGAACACGAGAATGTaGCTGTCCGTGTGGGCCACCATCCTGCCTACCACC | + |
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Preference number: 6 (lower is better) Translates to: CHLTFSNWNTRM*LSVWATILPTT Trigger: GGTGGTAGGCAGGATGGTGGCCCACACGGACAGCAACATTCTCGTGTTCCAGTTTGAAAATGTCAAGTGGCA 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000176577.2 |
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| CDS CAA 90 bp | GAGCTGTACTGCCACTTGACATTTTCAAACTGGAACACGAGAATGTaGCTGTCCGTGTGGGCCACCATCCTCTGGCGTCGACTTTTATCA | + |
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Preference number: 6 (lower is better) Translates to: ELYCHLTFSNWNTRM*LSVWATILWRRLLS Trigger: TGATAAAAGTCGACGCCAGAGGATGGTGGCCCACACGGACAGCAACATTCTCGTGTTCCAGTTTGAAAATGTCAAGTGGCAGTACAGCTC 50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000177336.8 |
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| CDS CCA 72 bp | TTTTCAAACTGGAACACGAGAATGTTGCTGTCCGTGTaGGCCACCATCCTCTGGCGTCGACTTTTATCACCT | + |
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Preference number: 6 (lower is better) Translates to: FSNWNTRMLLSV*ATILWRRLLSP Trigger: AGGTGATAAAAGTCGACGCCAGAGGATGGTGGCCCACACGGACAGCAACATTCTCGTGTTCCAGTTTGAAAA 50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000177336.8 |
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| CDS CCA 72 bp | ATGGGCAGCTCCTTGGTCTGCATGATATCTAGAAGGTaGATCTTCCGATTGGATGATATGGCCATTAGGTCT | + |
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Preference number: 6 (lower is better) Translates to: MGSSLVCMISRR*IFRLDDMAIRS Trigger: AGACCTAATGGCCATATCATCCAATCGGAAGATCCACCTTCTAGATATCATGCAGACCAAGGAGCTGCCCAT 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 4 transcripts: ENSMUST00000036085.11 ENSMUST00000150989.8 ENSMUST00000176577.2 ENSMUST00000177336.8 |
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| CDS CAA 90 bp | TCCTTGCTCTTCTTTACTTTGTTCTTGTCTGAGCTGTACTGCCACTaGACATTTTCAAACTGGAACACGAGAATGTTGCTGTCCGTGTGG | + |
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Preference number: 6 (lower is better) Translates to: SLLFFTLFLSELYCH*TFSNWNTRMLLSVW Trigger: CCACACGGACAGCAACATTCTCGTGTTCCAGTTTGAAAATGTCAAGTGGCAGTACAGCTCAGACAAGAACAAAGTAAAGAAGAGCAAGGA 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000036085.11 ENSMUST00000150989.8 ENSMUST00000176577.2 |
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| CDS TCA 72 bp | GAAGAACATCACATCAGGAGTGTCATCATGAAGGCCTaGAATACTGTTCCACTCTTTCATGAACAGGACTCT | + |
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Preference number: 6 (lower is better) Translates to: EEHHIRSVIMKA*NTVPLFHEQDS Trigger: AGAGTCCTGTTCATGAAAGAGTGGAACAGTATTTCAGGCCTTCATGATGACACTCCTGATGTGATGTTCTTC 43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 4 transcripts: ENSMUST00000036085.11 ENSMUST00000150989.8 ENSMUST00000176577.2 ENSMUST00000177336.8 |
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| CDS TCA 72 bp | TTCTCAGGGAAGAACATCACATCAGGAGTGTCATCATaGAGGCCTGAAATACTGTTCCACTCTTTCATGAAC | + |
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Preference number: 6 (lower is better) Translates to: FSGKNITSGVSS*RPEILFHSFMN Trigger: GTTCATGAAAGAGTGGAACAGTATTTCAGGCCTTCATGATGACACTCCTGATGTGATGTTCTTCCCTGAGAA 43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 4 transcripts: ENSMUST00000036085.11 ENSMUST00000150989.8 ENSMUST00000176577.2 ENSMUST00000177336.8 |
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| CDS TCA 72 bp | CTCTTTGTCCTTGCTCTTCTTTACTTTGTTCTTGTCTaGGCTGTACTGCCACTTGACATTTTCAAACTGGAA | + |
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Preference number: 6 (lower is better) Translates to: LFVLALLYFVLV*AVLPLDIFKLE Trigger: TTCCAGTTTGAAAATGTCAAGTGGCAGTACAGCTCAGACAAGAACAAAGTAAAGAAGAGCAAGGACAAAGAG 40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000036085.11 ENSMUST00000150989.8 ENSMUST00000176577.2 |
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