RADAR | Search for sensor designs | Human genes | Mouse genes | Code

Pregenerated sensors for FBXO7 (Mus musculus)

Ensembl gene IDs: ENSMUSG00000001786

Ensembl transcript IDs: ENSMUST00000001837.14, ENSMUST00000117597.2, ENSMUST00000120344.8, ENSMUST00000130320.8, ENSMUST00000147168.2

Found 282 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).

Type Sensor Details
3UTR CCA 90 bp CCTCCAGGAAGTTCTCATGTGACTATCCAGCACCAGGGGGCGAGCTaGCTGGGCACCTGGGGGCTGGCACAGCAGCACCAGGAGAGCAGG +
Preference number: 1 (lower is better)
Translates to: PPGSSHVTIQHQGAS*LGTWGLAQQHQESR
Trigger: CCTGCTCTCCTGGTGCTGCTGTGCCAGCCCCCAGGTGCCCAGCCAGCTCGCCCCCTGGTGCTGGATAGTCACATGAGAACTTCCTGGAGG
66% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 1 transcripts:
ENSMUST00000130320.8
3UTR TCA 90 bp AACTCCATGCAAGGGAATCGCCACTGCCTCCAGGAAGTTCTCATGTaGCTATCCAGCACCAGGGGGCGAGCTGGCTGGGCACCTGGGGGC +
Preference number: 1 (lower is better)
Translates to: NSMQGNRHCLQEVLM*LSSTRGRAGWAPGG
Trigger: GCCCCCAGGTGCCCAGCCAGCTCGCCCCCTGGTGCTGGATAGTCACATGAGAACTTCCTGGAGGCAGTGGCGATTCCCTTGCATGGAGTT
62% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 1 transcripts:
ENSMUST00000130320.8
3UTR CCA 90 bp CAAGAGGGAGTGAGGTCCTGGAAGTGGGTCAACAGGGTCAAAACGTaGTCTGAGTGGACGGAACTGACCAGGAAGCTCCCCGGGCCTTGG +
Preference number: 1 (lower is better)
Translates to: QEGVRSWKWVNRVKT*SEWTELTRKLPGPW
Trigger: CCAAGGCCCGGGGAGCTTCCTGGTCAGTTCCGTCCACTCAGACCACGTTTTGACCCTGTTGACCCACTTCCAGGACCTCACTCCCTCTTG
60% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000001837.14
3UTR GCA 90 bp GAGCTGGCTGGGCACCTGGGGGCTGGCACAGGAGCTTGGAGCAGCTaGTCAGTGCCCGTTAGGTACTCAGGATTCTCTTTAGGTTACTCT +
Preference number: 1 (lower is better)
Translates to: ELAGHLGAGTGAWSS*SVPVRYSGFSLGYS
Trigger: AGAGTAACCTAAAGAGAATCCTGAGTACCTAACGGGCACTGAGCAGCTGCTCCAAGCTCCTGTGCCAGCCCCCAGGTGCCCAGCCAGCTC
59% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000130320.8
3UTR TCA 90 bp GAGGTGAACCAGAGGGGAGAGACCAGCAGTCACCTATTCCCAAGCTaGCCCCTCTTTGAGCAACCTTGTCCTTGGTGCCCACAGAACCAG +
Preference number: 1 (lower is better)
Translates to: EVNQRGETSSHLFPS*PLFEQPCPWCPQNQ
Trigger: CTGGTTCTGTGGGCACCAAGGACAAGGTTGCTCAAAGAGGGGTCAGCTTGGGAATAGGTGACTGCTGGTCTCTCCCCTCTGGTTCACCTC
57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000001837.14
ENSMUST00000117597.2
ENSMUST00000120344.8
ENSMUST00000130320.8
3UTR GCA 90 bp GCTACTACAAGTCAATGCGCCGGGGCTGCACCATTCTCAAGCGCTTaGCATGGGCTTCTAGGCTGTCCTGCTCCCATTACAGTGCATGGA +
Preference number: 1 (lower is better)
Translates to: ATTSQCAGAAPFSSA*HGLLGCPAPITVHG
Trigger: TCCATGCACTGTAATGGGAGCAGGACAGCCTAGAAGCCCATGGCAAGCGCTTGAGAATGGTGCAGCCCCGGCGCATTGACTTGTAGTAGC
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000130320.8
3UTR CCA 90 bp GTTGGGGATAGCTCTTCCTGGCAAGAGGGAGTGAGGTCCTGGAAGTaGGTCAACAGGGTCAAAACGTGGTCTGAGTGGACGGAACTGACC +
Preference number: 1 (lower is better)
Translates to: VGDSSSWQEGVRSWK*VNRVKTWSEWTELT
Trigger: GGTCAGTTCCGTCCACTCAGACCACGTTTTGACCCTGTTGACCCACTTCCAGGACCTCACTCCCTCTTGCCAGGAAGAGCTATCCCCAAC
57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000001837.14
3UTR CCA 90 bp CCTGCCGGGTCTGAAGGGAAATCTGTTGTTGGGGATAGCTCTTCCTaGCAAGAGGGAGTGAGGTCCTGGAAGTGGGTCAACAGGGTCAAA +
Preference number: 1 (lower is better)
Translates to: PAGSEGKSVVGDSSS*QEGVRSWKWVNRVK
Trigger: TTTGACCCTGTTGACCCACTTCCAGGACCTCACTCCCTCTTGCCAGGAAGAGCTATCCCCAACAACAGATTTCCCTTCAGACCCGGCAGG
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000001837.14
3UTR TCA 90 bp GACACCTCAAGGCCGCCACAGCACACTTCCTCCAGACCTGTCCCATaGTTAGATGATGCTGCTTGGACTTTGGCTGGTGGCGAATCAACT +
Preference number: 1 (lower is better)
Translates to: DTSRPPQHTSSRPVP*LDDAAWTLAGGEST
Trigger: AGTTGATTCGCCACCAGCCAAAGTCCAAGCAGCATCATCTAATCATGGGACAGGTCTGGAGGAAGTGTGCTGTGGCGGCCTTGAGGTGTC
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000130320.8
3UTR CCA 90 bp TCTGTTGTTGGGGATAGCTCTTCCTGGCAAGAGGGAGTGAGGTCCTaGAAGTGGGTCAACAGGGTCAAAACGTGGTCTGAGTGGACGGAA +
Preference number: 1 (lower is better)
Translates to: SVVGDSSSWQEGVRS*KWVNRVKTWSEWTE
Trigger: TTCCGTCCACTCAGACCACGTTTTGACCCTGTTGACCCACTTCCAGGACCTCACTCCCTCTTGCCAGGAAGAGCTATCCCCAACAACAGA
54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000001837.14
3UTR TCA 90 bp ATAAAGTCTCCAAATTGGTCACAGGAATGGCAGCCGGCTGTCAGCTaGCCTACCCCTGCCGGGTCTGAAGGGAAATCTGTTGTTGGGGAT +
Preference number: 1 (lower is better)
Translates to: IKSPNWSQEWQPAVS*PTPAGSEGKSVVGD
Trigger: ATCCCCAACAACAGATTTCCCTTCAGACCCGGCAGGGGTAGGTCAGCTGACAGCCGGCTGCCATTCCTGTGACCAATTTGGAGACTTTAT
53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000001837.14
3UTR TCA 90 bp AAGGCCGCCACAGCACACTTCCTCCAGACCTGTCCCATGATTAGATaGTGCTGCTTGGACTTTGGCTGGTGGCGAATCAACTTTCAAGGC +
Preference number: 1 (lower is better)
Translates to: KAATAHFLQTCPMIR*CCLDFGWWRINFQG
Trigger: GCCTTGAAAGTTGATTCGCCACCAGCCAAAGTCCAAGCAGCATCATCTAATCATGGGACAGGTCTGGAGGAAGTGTGCTGTGGCGGCCTT
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000130320.8
3UTR TCA 90 bp CTGACTCGAGCATCAGGAGATGCACCAGCACTATCAAGGCATCACTaGTGTTGGAGCAGCCAGCTGACTGGTACAGGGTCTCTAGAGAAT +
Preference number: 1 (lower is better)
Translates to: LTRASGDAPALSRHH*CWSSQLTGTGSLEN
Trigger: ATTCTCTAGAGACCCTGTACCAGTCAGCTGGCTGCTCCAACATCAGTGATGCCTTGATAGTGCTGGTGCATCTCCTGATGCTCGAGTCAG
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000001837.14
3UTR TCA 90 bp AAGGGAAATCTGTTGTTGGGGATAGCTCTTCCTGGCAAGAGGGAGTaGGGTCCTGGAAGTGGGTCAACAGGGTCAAAACGTGGTCTGAGT +
Preference number: 1 (lower is better)
Translates to: KGNLLLGIALPGKRE*GPGSGSTGSKRGLS
Trigger: ACTCAGACCACGTTTTGACCCTGTTGACCCACTTCCAGGACCTCACTCCCTCTTGCCAGGAAGAGCTATCCCCAACAACAGATTTCCCTT
52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000001837.14
3UTR CCA 90 bp ACCAGCACTATCAAGGCATCACTGATGTTGGAGCAGCCAGCTGACTaGTACAGGGTCTCTAGAGAATGTGGTACCTGCCCATCCTCTGTT +
Preference number: 1 (lower is better)
Translates to: TSTIKASLMLEQPAD*YRVSRECGTCPSSV
Trigger: AACAGAGGATGGGCAGGTACCACATTCTCTAGAGACCCTGTACCAGTCAGCTGGCTGCTCCAACATCAGTGATGCCTTGATAGTGCTGGT
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000001837.14
3UTR CCA 90 bp AGAGAGCTTCTTAAGATCTTTGTACACTTTGGCTGCGCTTTCCCCTaGTTCTACTCCAGCAGCAACGTAGGATCCTGGCTGCAGCTGCAC +
Preference number: 1 (lower is better)
Translates to: RELLKIFVHFGCAFP*FYSSSNVGSWLQLH
Trigger: GTGCAGCTGCAGCCAGGATCCTACGTTGCTGCTGGAGTAGAACCAGGGGAAAGCGCAGCCAAAGTGTACAAAGATCTTAAGAAGCTCTCT
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000001837.14
3UTR GCA 90 bp CTGCAGACAGGGCCAGGACAGAATGAACATCCAAAAGTCGGAAGATaGGTAGTTTCAGCTCCAGTGGAAGGACAACCAGCCCAAACACAT +
Preference number: 1 (lower is better)
Translates to: LQTGPGQNEHPKVGR*VVSAPVEGQPAQTH
Trigger: ATGTGTTTGGGCTGGTTGTCCTTCCACTGGAGCTGAAACTACGCATCTTCCGACTTTTGGATGTTCATTCTGTCCTGGCCCTGTCTGCAG
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000001837.14
3UTR CCA 90 bp ACACAAGGGGGAAGCTTAGGTGGTAATGTGTCTGTACCAACCCAGTaGTCTTCGGAACCCTTGAAGTTCCTCACAGAACCCAGAAAGCTG +
Preference number: 1 (lower is better)
Translates to: TQGGSLGGNVSVPTQ*SSEPLKFLTEPRKL
Trigger: CAGCTTTCTGGGTTCTGTGAGGAACTTCAAGGGTTCCGAAGACCACTGGGTTGGTACAGACACATTACCACCTAAGCTTCCCCCTTGTGT
51% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000130320.8
3UTR TCA 90 bp AGGCATTGTCACTGCTTTGGTTTCAGTTCCCTGAGGAATGTAGCCTaGCTCGAGCATCAGGAGATGCACCAGCACTATCAAGGCATCACT +
Preference number: 1 (lower is better)
Translates to: RHCHCFGFSSLRNVA*LEHQEMHQHYQGIT
Trigger: AGTGATGCCTTGATAGTGCTGGTGCATCTCCTGATGCTCGAGTCAGGCTACATTCCTCAGGGAACTGAAACCAAAGCAGTGACAATGCCT
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000001837.14
3UTR GCA 90 bp CAGAATACCCACACCATTTCTCTTTCCCCAATGCTTCTGGGCTGCTaGGTCCACTCTAGCATGCACTTGGTCTATTCCTCAAGTATCAGG +
Preference number: 1 (lower is better)
Translates to: QNTHTISLSPMLLGC*VHSSMHLVYSSSIR
Trigger: CCTGATACTTGAGGAATAGACCAAGTGCATGCTAGAGTGGACGCAGCAGCCCAGAAGCATTGGGGAAAGAGAAATGGTGTGGGTATTCTG
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000130320.8
3UTR GCA 90 bp GCACAGAATACCCACACCATTTCTCTTTCCCCAATGCTTCTGGGCTaGTGCGTCCACTCTAGCATGCACTTGGTCTATTCCTCAAGTATC +
Preference number: 1 (lower is better)
Translates to: AQNTHTISLSPMLLG*CVHSSMHLVYSSSI
Trigger: GATACTTGAGGAATAGACCAAGTGCATGCTAGAGTGGACGCAGCAGCCCAGAAGCATTGGGGAAAGAGAAATGGTGTGGGTATTCTGTGC
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000130320.8
3UTR CCA 90 bp TCAAGGCACAGAATACCCACACCATTTCTCTTTCCCCAATGCTTCTaGGCTGCTGCGTCCACTCTAGCATGCACTTGGTCTATTCCTCAA +
Preference number: 1 (lower is better)
Translates to: SRHRIPTPFLFPQCF*AAASTLACTWSIPQ
Trigger: TTGAGGAATAGACCAAGTGCATGCTAGAGTGGACGCAGCAGCCCAGAAGCATTGGGGAAAGAGAAATGGTGTGGGTATTCTGTGCCTTGA
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000130320.8
3UTR GCA 90 bp TTTGAAGAGACGAGAGAGCTTCTTAAGATCTTTGTACACTTTGGCTaGGCTTTCCCCTGGTTCTACTCCAGCAGCAACGTAGGATCCTGG +
Preference number: 1 (lower is better)
Translates to: FEETRELLKIFVHFG*AFPWFYSSSNVGSW
Trigger: CCAGGATCCTACGTTGCTGCTGGAGTAGAACCAGGGGAAAGCGCAGCCAAAGTGTACAAAGATCTTAAGAAGCTCTCTCGTCTCTTCAAA
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000001837.14
3UTR GCA 90 bp CAACTTTCAAGGCACAGAATACCCACACCATTTCTCTTTCCCCAATaGTTCTGGGCTGCTGCGTCCACTCTAGCATGCACTTGGTCTATT +
Preference number: 1 (lower is better)
Translates to: QLSRHRIPTPFLFPQ*FWAAASTLACTWSI
Trigger: AATAGACCAAGTGCATGCTAGAGTGGACGCAGCAGCCCAGAAGCATTGGGGAAAGAGAAATGGTGTGGGTATTCTGTGCCTTGAAAGTTG
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000130320.8
3UTR CCA 90 bp AGGTTCAGTACTTGCCGTGTGAAAGCCAGAAGAGGGTACACCAGCTaGTCTTTGAAGAGACGAGAGAGCTTCTTAAGATCTTTGTACACT +
Preference number: 1 (lower is better)
Translates to: RFSTCRVKARRGYTS*SLKRRESFLRSLYT
Trigger: AGTGTACAAAGATCTTAAGAAGCTCTCTCGTCTCTTCAAAGACCAGCTGGTGTACCCTCTTCTGGCTTTCACACGGCAAGTACTGAACCT
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000001837.14
3UTR TCA 90 bp TGTGCTTCTTTCTATACAATTCTTTCCAGTCTGTGTCAGGACCTCTaGCAGTGCCATCTCGAAAATCCCGCAGATACAAACACCTCCACA +
Preference number: 1 (lower is better)
Translates to: CASFYTILSSLCQDL*QCHLENPADTNTST
Trigger: TGTGGAGGTGTTTGTATCTGCGGGATTTTCGAGATGGCACTGTCAGAGGTCCTGACACAGACTGGAAAGAATTGTATAGAAAGAAGCACA
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000001837.14
3UTR TCA 90 bp GGGATAGGGTGGGCTGATGGTAGGAACATTGCATGCCGCATCCTCTaGGCCTCTTTTCTTTGTATGTGCTTCTTTCTATACAATTCTTTC +
Preference number: 1 (lower is better)
Translates to: GIGWADGRNIACRIL*ASFLCMCFFLYNSF
Trigger: GAAAGAATTGTATAGAAAGAAGCACATACAAAGAAAAGAGGCTCAGAGGATGCGGCATGCAATGTTCCTACCATCAGCCCACCCTATCCC
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000001837.14
3UTR GCA 90 bp AAGAGAGATAGAGACTTGCCTAGCATACTGCAATACCCTTATCCATaGAAGAGTTTACAAAACACCACCAGCACTAGAGCACAGCAGAGG +
Preference number: 1 (lower is better)
Translates to: KRDRDLPSILQYPYP*KSLQNTTSTRAQQR
Trigger: CCTCTGCTGTGCTCTAGTGCTGGTGGTGTTTTGTAAACTCTTGCATGGATAAGGGTATTGCAGTATGCTAGGCAAGTCTCTATCTCTCTT
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000130320.8
3UTR TCA 90 bp TGGATGGAAACCAGAAACCTCTTCCATACTCATGGCATCCTGAATTaGCTCAGCTTCAACATTTTGACTAGGCCCTTCCATACTGTCATC +
Preference number: 1 (lower is better)
Translates to: WMETRNLFHTHGILN*LSFNILTRPFHTVI
Trigger: GATGACAGTATGGAAGGGCCTAGTCAAAATGTTGAAGCTGAGTCAATTCAGGATGCCATGAGTATGGAAGAGGTTTCTGGTTTCCATCCA
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000147168.2
3UTR TCA 90 bp TTTTTACACAGGGAGCCACAAGTTGGAAAGGGCTCTTCCCAAGACTaGATTATTACCAGCCATGACAAATGGGCATTTTCCACTTACAGT +
Preference number: 1 (lower is better)
Translates to: FLHREPQVGKGSSQD*IITSHDKWAFSTYS
Trigger: ACTGTAAGTGGAAAATGCCCATTTGTCATGGCTGGTAATAATTCAGTCTTGGGAAGAGCCCTTTCCAACTTGTGGCTCCCTGTGTAAAAA
43% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000130320.8
3UTR GCA 90 bp CAGTTCTTCAGTATAACTTTAAAGGAAAATCAACTGAAAACTCCATaGAAGGGAATCGCCACTGCCTCCAGGAAGTTCTCATGTGACTAT +
Preference number: 1 (lower is better)
Translates to: QFFSITLKENQLKTP*KGIATASRKFSCDY
Trigger: ATAGTCACATGAGAACTTCCTGGAGGCAGTGGCGATTCCCTTGCATGGAGTTTTCAGTTGATTTTCCTTTAAAGTTATACTGAAGAACTG
41% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000130320.8
3UTR CCA 90 bp CCATTTGGAAATGACTTATATTCTGAAAACTTGTATTTGGTGCTCTaGTCATCACTGCTTCCCATGCTAACATTCAGCCACACACACACA +
Preference number: 1 (lower is better)
Translates to: PFGNDLYSENLYLVL*SSLLPMLTFSHTHT
Trigger: TGTGTGTGTGTGGCTGAATGTTAGCATGGGAAGCAGTGATGACCAGAGCACCAAATACAAGTTTTCAGAATATAAGTCATTTCCAAATGG
41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000130320.8
3UTR CCA 90 bp GATCTAACTGGTAGATCTAGAGAAGAAAGCAAAAACACCCAGAGGTaGTCATCAAGTCTTGAGAAGTTAAACACTTTTCATACCCAACAC +
Preference number: 1 (lower is better)
Translates to: DLTGRSREESKNTQR*SSSLEKLNTFHTQH
Trigger: GTGTTGGGTATGAAAAGTGTTTAACTTCTCAAGACTTGATGACCACCTCTGGGTGTTTTTGCTTTCTTCTCTAGATCTACCAGTTAGATC
40% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000130320.8
3UTR-3UTR TCA 90 bp CACACCATTTCTCTTTCCCCAATGCTTCTGGGCTGCTGCGTCCACTCTAGCATGCCCCAGGGCCTTGCGTaGGGACCAGCTCCCAACAGC +
Preference number: 2 (lower is better)
Translates to: HTISLSPMLLGCCVHSSMPQGLA*GPAPNS
Trigger: GCTGTTGGGAGCTGGTCCTCACGCAAGGCCCTGGGG...CATGCTAGAGTGGACGCAGCAGCCCAGAAGCATTGGGGAAAGAGAAATGGTGTG
60% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000130320.8
3UTR-3UTR CCA 90 bp CTACCCCTGCCGGGTCTGAAGGGAAATCTGTTGTTGGGGATAGCTCTTCCTGGCGAGGAAGCAGCGAGGTaGGAAGGTAGGCCCTGGGGT +
Preference number: 2 (lower is better)
Translates to: LPLPGLKGNLLLGIALPGEEAAR*EGRPWG
Trigger: ACCCCAGGGCCTACCTTCCCACCTCGCTGCTTCCTC...GCCAGGAAGAGCTATCCCCAACAACAGATTTCCCTTCAGACCCGGCAGGGGTAG
60% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 1 transcripts:
ENSMUST00000001837.14
3UTR CAA 90 bp GGCTACTACAAGTCAATGCGCCGGGGCTGCACCATTCTCAAGCGCTaGCCATGGGCTTCTAGGCTGTCCTGCTCCCATTACAGTGCATGG +
Preference number: 2 (lower is better)
Translates to: GYYKSMRRGCTILKR*PWASRLSCSHYSAW
Trigger: CCATGCACTGTAATGGGAGCAGGACAGCCTAGAAGCCCATGGCAAGCGCTTGAGAATGGTGCAGCCCCGGCGCATTGACTTGTAGTAGCC
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000130320.8
3UTR-3UTR TCA 90 bp CTACCCCTGCCGGGTCTGAAGGGAAATCTGTTGTTGGGGATAGCTCTTCCTGGCCTGTGTCAGGACCTCTaGCAGTGCCATCTCGAAAAT +
Preference number: 2 (lower is better)
Translates to: LPLPGLKGNLLLGIALPGLCQDL*QCHLEN
Trigger: ATTTTCGAGATGGCACTGTCAGAGGTCCTGACACAG...GCCAGGAAGAGCTATCCCCAACAACAGATTTCCCTTCAGACCCGGCAGGGGTAG
54% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 1 transcripts:
ENSMUST00000001837.14
3UTR-3UTR CCA 90 bp CTACCCCTGCCGGGTCTGAAGGGAAATCTGTTGTTGGGGATAGCTCTTCCTGGCAGAGGGTACACCAGCTaGTCTTTGAAGAGACGAGAG +
Preference number: 2 (lower is better)
Translates to: LPLPGLKGNLLLGIALPGRGYTS*SLKRRE
Trigger: CTCTCGTCTCTTCAAAGACCAGCTGGTGTACCCTCT...GCCAGGAAGAGCTATCCCCAACAACAGATTTCCCTTCAGACCCGGCAGGGGTAG
54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000001837.14
3UTR-3UTR CCA 90 bp CCTGCCGGGTCTGAAGGGAAATCTGTTGTTGGGGATAGCTCTTCCTGGCAAGAGGTGAGGTCCTGGAAGTaGGTCAACAGGGTCAAAACG +
Preference number: 2 (lower is better)
Translates to: PAGSEGKSVVGDSSSWQEVRSWK*VNRVKT
Trigger: CGTTTTGACCCTGTTGACCCACTTCCAGGACCTCAC...CTCTTGCCAGGAAGAGCTATCCCCAACAACAGATTTCCCTTCAGACCCGGCAGG
54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000001837.14
3UTR CAA 90 bp TCGAGCATCAGGAGATGCACCAGCACTATCAAGGCATCACTGATGTaGGAGCAGCCAGCTGACTGGTACAGGGTCTCTAGAGAATGTGGT +
Preference number: 2 (lower is better)
Translates to: SSIRRCTSTIKASLM*EQPADWYRVSRECG
Trigger: ACCACATTCTCTAGAGACCCTGTACCAGTCAGCTGGCTGCTCCAACATCAGTGATGCCTTGATAGTGCTGGTGCATCTCCTGATGCTCGA
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000001837.14
3UTR-3UTR GCA 90 bp TCAAGGCACAGAATACCCACACCATTTCTCTTTCCCCAATGCTTCTGGGCTGCTGGAGCAGCTGCTCAGTaGCCGTTAGGTACTCAGGAT +
Preference number: 2 (lower is better)
Translates to: SRHRIPTPFLFPQCFWAAGAAAQ*PLGTQD
Trigger: ATCCTGAGTACCTAACGGGCACTGAGCAGCTGCTCC...AGCAGCCCAGAAGCATTGGGGAAAGAGAAATGGTGTGGGTATTCTGTGCCTTGA
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000130320.8
3UTR CAA 90 bp CCCTTGAAGTTCCTCACAGAACCCAGAAAGCTGCTAAGGAAAGGGTaGGGCTCACTGAGTTCGAGCGCACTAGTTCCACTTGTATCATGC +
Preference number: 2 (lower is better)
Translates to: PLKFLTEPRKLLRKG*GSLSSSALVPLVSC
Trigger: GCATGATACAAGTGGAACTAGTGCGCTCGAACTCAGTGAGCCCAACCCTTTCCTTAGCAGCTTTCTGGGTTCTGTGAGGAACTTCAAGGG
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000130320.8
3UTR-3UTR TCA 90 bp AAGGCACAGAATACCCACACCATTTCTCTTTCCCCAATGCTTCTGGGCTGCTGCAACAAGTGCCTCACCTaGCAGCACATAAAGGACGCT +
Preference number: 2 (lower is better)
Translates to: KAQNTHTISLSPMLLGCCNKCLT*QHIKDA
Trigger: AGCGTCCTTTATGTGCTGTCAGGTGAGGCACTTGTT...GCAGCAGCCCAGAAGCATTGGGGAAAGAGAAATGGTGTGGGTATTCTGTGCCTT
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000130320.8
3UTR-3UTR TCA 90 bp TCAAGGCACAGAATACCCACACCATTTCTCTTTCCCCAATGCTTCTGGGCTGCTAGCTCCAAAGCCCAATaGCAAGGATGTGTGCGAGAC +
Preference number: 2 (lower is better)
Translates to: SRHRIPTPFLFPQCFWAASSKAQ*QGCVRD
Trigger: GTCTCGCACACATCCTTGTCATTGGGCTTTGGAGCT...AGCAGCCCAGAAGCATTGGGGAAAGAGAAATGGTGTGGGTATTCTGTGCCTTGA
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000130320.8
3UTR-3UTR TCA 90 bp ACTAGAGCACAGCAGAGGACCTGTCTAGCTCTTCTCCAAGGCTCAAATAGGCAGAACAAAGCCATGCAGTaGACAAGCTACTGCCAAGCC +
Preference number: 2 (lower is better)
Translates to: TRAQQRTCLALLQGSNRQNKAMQ*TSYCQA
Trigger: GGCTTGGCAGTAGCTTGTTCACTGCATGGCTTTGTT...CTGCCTATTTGAGCCTTGGAGAAGAGCTAGACAGGTCCTCTGCTGTGCTCTAGT
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000130320.8
3UTR-3UTR TCA 90 bp GGTCGGTGTTTGCAGTACAAGCACAAGGACCTGCATTTGATTCTCAGGAGCCATGGGCCGAGAAAGATGTaGGGCTACTACAAGTCAATG +
Preference number: 2 (lower is better)
Translates to: GRCLQYKHKDLHLILRSHGPRKM*GYYKSM
Trigger: CATTGACTTGTAGTAGCCTCACATCTTTCTCGGCCC...ATGGCTCCTGAGAATCAAATGCAGGTCCTTGTGCTTGTACTGCAAACACCGACC
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000130320.8
3UTR CAA 90 bp TACACCAGCTGGTCTTTGAAGAGACGAGAGAGCTTCTTAAGATCTTaGTACACTTTGGCTGCGCTTTCCCCTGGTTCTACTCCAGCAGCA +
Preference number: 2 (lower is better)
Translates to: YTSWSLKRRESFLRS*YTLAALSPGSTPAA
Trigger: TGCTGCTGGAGTAGAACCAGGGGAAAGCGCAGCCAAAGTGTACAAAGATCTTAAGAAGCTCTCTCGTCTCTTCAAAGACCAGCTGGTGTA
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000001837.14
3UTR CAA 90 bp TTAGGTGGTAATGTGTCTGTACCAACCCAGTGGTCTTCGGAACCCTaGAAGTTCCTCACAGAACCCAGAAAGCTGCTAAGGAAAGGGTTG +
Preference number: 2 (lower is better)
Translates to: LGGNVSVPTQWSSEP*KFLTEPRKLLRKGL
Trigger: CAACCCTTTCCTTAGCAGCTTTCTGGGTTCTGTGAGGAACTTCAAGGGTTCCGAAGACCACTGGGTTGGTACAGACACATTACCACCTAA
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000130320.8
3UTR-3UTR TCA 90 bp TCAAGGCACAGAATACCCACACCATTTCTCTTTCCCCAATGCTTCTGGGCTGCTCACTTTGGGCTTGATTaGAGACAAATGGGAAGGCTG +
Preference number: 2 (lower is better)
Translates to: SRHRIPTPFLFPQCFWAAHFGLD*RQMGRL
Trigger: CAGCCTTCCCATTTGTCTTCAATCAAGCCCAAAGTG...AGCAGCCCAGAAGCATTGGGGAAAGAGAAATGGTGTGGGTATTCTGTGCCTTGA
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000130320.8
3UTR-3UTR GCA 90 bp TCTGGAAGGTTCAGTACTTGCCGTGTGAAAGCCAGAAGAGGGTACACCAGCTGGAGAGAATGTGGTACCTaGCCATCCTCTGTTTCATTA +
Preference number: 2 (lower is better)
Translates to: SGRFSTCRVKARRGYTSWRECGT*PSSVSL
Trigger: TAATGAAACAGAGGATGGGCAGGTACCACATTCTCT...CCAGCTGGTGTACCCTCTTCTGGCTTTCACACGGCAAGTACTGAACCTTCCAGA
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000001837.14
3UTR-3UTR CCA 90 bp TTGAGCAACCTTGTCCTTGGTGCCCACAGAACCAGAAACCGACAGCAGAGATCACAAAATGGGATAGGGTaGGCTGATGGTAGGAACATT +
Preference number: 2 (lower is better)
Translates to: LSNLVLGAHRTRNRQQRSQNGIG*ADGRNI
Trigger: AATGTTCCTACCATCAGCCCACCCTATCCCATTTTG...TGATCTCTGCTGTCGGTTTCTGGTTCTGTGGGCACCAAGGACAAGGTTGCTCAA
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000001837.14
3UTR-3UTR CCA 90 bp AAAAGACACCTCAAGGCCGCCACAGCACACTTCCTCCAGACCTGTCCCATGATTAGGTCACATCACCTCTaGCCTCTAGAATATCAAACA +
Preference number: 2 (lower is better)
Translates to: KRHLKAATAHFLQTCPMIRSHHL*PLEYQT
Trigger: TGTTTGATATTCTAGAGGCCAGAGGTGATGTGACCT...AATCATGGGACAGGTCTGGAGGAAGTGTGCTGTGGCGGCCTTGAGGTGTCTTTT
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000130320.8
3UTR-3UTR CCA 90 bp CTCAGCTTCAACATTTTGACTAGGCCCTTCCATACTGTCATCAGTCCAGGCATCGATGTTAGTCTGACTTaGGGTGGCAGCCAAAGAAGG +
Preference number: 2 (lower is better)
Translates to: LSFNILTRPFHTVISPGIDVSLT*GGSQRR
Trigger: CCTTCTTTGGCTGCCACCCCAAGTCAGACTAACATC...GATGCCTGGACTGATGACAGTATGGAAGGGCCTAGTCAAAATGTTGAAGCTGAG
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000147168.2
3UTR-3UTR CCA 90 bp AGCTTCAACATTTTGACTAGGCCCTTCCATACTGTCATCAGTCCAGGCATCAAAGGGGTGGCCTGTCCTTaGGATGAATCAGTCCCTTGT +
Preference number: 2 (lower is better)
Translates to: SFNILTRPFHTVISPGIKGVACP*DESVPC
Trigger: ACAAGGGACTGATTCATCCCAAGGACAGGCCACCCC...TTTGATGCCTGGACTGATGACAGTATGGAAGGGCCTAGTCAAAATGTTGAAGCT
49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000147168.2
3UTR-3UTR TCA 90 bp TCAAGGCACAGAATACCCACACCATTTCTCTTTCCCCAATGCTTCTGGGCTGCTTACAGTGCATGGAGATaGCATCAACAAAGCCATGCA +
Preference number: 2 (lower is better)
Translates to: SRHRIPTPFLFPQCFWAAYSAWR*HQQSHA
Trigger: TGCATGGCTTTGTTGATGTCATCTCCATGCACTGTA...AGCAGCCCAGAAGCATTGGGGAAAGAGAAATGGTGTGGGTATTCTGTGCCTTGA
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000130320.8
3UTR-3UTR TCA 90 bp CACACCATTTCTCTTTCCCCAATGCTTCTGGGCTGCTGCGTCCACTCTAGCATGAATTATTACCAGCCATaGCAAATGGGCATTTTCCAC +
Preference number: 2 (lower is better)
Translates to: HTISLSPMLLGCCVHSSMNYYQP*QMGIFH
Trigger: GTGGAAAATGCCCATTTGTCATGGCTGGTAATAATT...CATGCTAGAGTGGACGCAGCAGCCCAGAAGCATTGGGGAAAGAGAAATGGTGTG
48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000130320.8
3UTR-3UTR GCA 90 bp TCAAGGCACAGAATACCCACACCATTTCTCTTTCCCCAATGCTTCTGGGCTGCTACATCAACAAAGCCATaGAGTGAACAAGCTACTGCC +
Preference number: 2 (lower is better)
Translates to: SRHRIPTPFLFPQCFWAATSTKP*SEQATA
Trigger: GGCAGTAGCTTGTTCACTGCATGGCTTTGTTGATGT...AGCAGCCCAGAAGCATTGGGGAAAGAGAAATGGTGTGGGTATTCTGTGCCTTGA
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000130320.8
3UTR CAA 90 bp AGTACTTGCCGTGTGAAAGCCAGAAGAGGGTACACCAGCTGGTCTTaGAAGAGACGAGAGAGCTTCTTAAGATCTTTGTACACTTTGGCT +
Preference number: 2 (lower is better)
Translates to: STCRVKARRGYTSWS*KRRESFLRSLYTLA
Trigger: AGCCAAAGTGTACAAAGATCTTAAGAAGCTCTCTCGTCTCTTCAAAGACCAGCTGGTGTACCCTCTTCTGGCTTTCACACGGCAAGTACT
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000001837.14
3UTR CAA 90 bp CTAGTGAGACTGACACCAGCACCATCAGGACCTCCCAGGGCCCATTaGGAAATGACTTATATTCTGAAAACTTGTATTTGGTGCTCTGGT +
Preference number: 2 (lower is better)
Translates to: LVRLTPAPSGPPRAH*EMTYILKTCIWCSG
Trigger: ACCAGAGCACCAAATACAAGTTTTCAGAATATAAGTCATTTCCAAATGGGCCCTGGGAGGTCCTGATGGTGCTGGTGTCAGTCTCACTAG
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000130320.8
3UTR-3UTR CCA 90 bp AAGGCACAGAATACCCACACCATTTCTCTTTCCCCAATGCTTCTGGGCTGCTGCCTCAAGTATCAGGTGTaGCAGTTCTTCAGTATAACT +
Preference number: 2 (lower is better)
Translates to: KAQNTHTISLSPMLLGCCLKYQV*QFFSIT
Trigger: AGTTATACTGAAGAACTGCCACACCTGATACTTGAG...GCAGCAGCCCAGAAGCATTGGGGAAAGAGAAATGGTGTGGGTATTCTGTGCCTT
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000130320.8
3UTR-3UTR GCA 90 bp GGTCGGTGTTTGCAGTACAAGCACAAGGACCTGCATTTGATTCTCAGGAGCCATGTTCCACTTGTATCATaGTGTAAGTTGAGCTTTCAC +
Preference number: 2 (lower is better)
Translates to: GRCLQYKHKDLHLILRSHVPLVS*CKLSFH
Trigger: GTGAAAGCTCAACTTACAGCATGATACAAGTGGAAC...ATGGCTCCTGAGAATCAAATGCAGGTCCTTGTGCTTGTACTGCAAACACCGACC
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000130320.8
3UTR-3UTR CCA 90 bp TTCTTAAGATCTTTGTACACTTTGGCTGCGCTTTCCCCTGGTTCTACTCCAGCAGCATTGTCACTGCTTTaGTTTCAGTTCCCTGAGGAA +
Preference number: 2 (lower is better)
Translates to: FLRSLYTLAALSPGSTPAALSLL*FQFPEE
Trigger: TTCCTCAGGGAACTGAAACCAAAGCAGTGACAATGC...TGCTGGAGTAGAACCAGGGGAAAGCGCAGCCAAAGTGTACAAAGATCTTAAGAA
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000001837.14
3UTR-3UTR CCA 90 bp CAAGCTGACCTAATGAAGCCGAGACACAACAAAGACCTATTCAATTTGTACACAAATGGGAAGGCTGGGTaGCAAGCAAGCCAAACTGGT +
Preference number: 2 (lower is better)
Translates to: QADLMKPRHNKDLFNLYTNGKAG*QASQTG
Trigger: ACCAGTTTGGCTTGCTTGCCACCCAGCCTTCCCATT...TGTGTACAAATTGAATAGGTCTTTGTTGTGTCTCGGCTTCATTAGGTCAGCTTG
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000130320.8
3UTR CAA 90 bp TCCCAGGGCCCATTTGGAAATGACTTATATTCTGAAAACTTGTATTaGGTGCTCTGGTCATCACTGCTTCCCATGCTAACATTCAGCCAC +
Preference number: 2 (lower is better)
Translates to: SQGPFGNDLYSENLY*VLWSSLLPMLTFSH
Trigger: GTGGCTGAATGTTAGCATGGGAAGCAGTGATGACCAGAGCACCAAATACAAGTTTTCAGAATATAAGTCATTTCCAAATGGGCCCTGGGA
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000130320.8
3UTR CAA 90 bp AGGACCTCCCAGGGCCCATTTGGAAATGACTTATATTCTGAAAACTaGTATTTGGTGCTCTGGTCATCACTGCTTCCCATGCTAACATTC +
Preference number: 2 (lower is better)
Translates to: RTSQGPFGNDLYSEN*YLVLWSSLLPMLTF
Trigger: GAATGTTAGCATGGGAAGCAGTGATGACCAGAGCACCAAATACAAGTTTTCAGAATATAAGTCATTTCCAAATGGGCCCTGGGAGGTCCT
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000130320.8
3UTR CAA 90 bp AAGACACAGAACCTCTTTTGTGTTCCCACAAAGCATGAGCCCAGATaGATAAACATGCACACCCAGGCTTCATATGCAGATCTAACTGGT +
Preference number: 2 (lower is better)
Translates to: KTQNLFCVPTKHEPR*INMHTQASYADLTG
Trigger: ACCAGTTAGATCTGCATATGAAGCCTGGGTGTGCATGTTTATCAATCTGGGCTCATGCTTTGTGGGAACACAAAAGAGGTTCTGTGTCTT
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000130320.8
3UTR-3UTR CCA 90 bp CCATCCTCTGTTTCATTACAGAGCATTGGTTCCAATGGATGGAAACCAGAAACCGAGCATTGGTTCCAATaGATGGAAACCAGAAACCTC +
Preference number: 2 (lower is better)
Translates to: PSSVSLQSIGSNGWKPETEHWFQ*METRNL
Trigger: GAGGTTTCTGGTTTCCATCCATTGGAACCAATGCTC...GGTTTCTGGTTTCCATCCATTGGAACCAATGCTCTGTAATGAAACAGAGGATGG
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000001837.14
ENSMUST00000147168.2
3UTR CAA 90 bp CAAGCTGACCTAATGAAGCCGAGACACAACAAAGACCTATTCAATTaGTACACAATGACCAAGGACTTCCAAACACGACCCCAAAAGACA +
Preference number: 2 (lower is better)
Translates to: QADLMKPRHNKDLFN*YTMTKDFQTRPQKT
Trigger: TGTCTTTTGGGGTCGTGTTTGGAAGTCCTTGGTCATTGTGTACAAATTGAATAGGTCTTTGTTGTGTCTCGGCTTCATTAGGTCAGCTTG
43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000130320.8
3UTR-3UTR TCA 90 bp GGTCTATTCCTCAAGTATCAGGTGTGGCAGTTCTTCAGTATAACTTTAAAGGAAACAAGGACCTGCATTTaGTTCTCAGGAGCCATGCTG +
Preference number: 2 (lower is better)
Translates to: GLFLKYQVWQFFSITLKETRTCI*FSGAML
Trigger: CAGCATGGCTCCTGAGAATCAAATGCAGGTCCTTGT...TTCCTTTAAAGTTATACTGAAGAACTGCCACACCTGATACTTGAGGAATAGACC
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000130320.8
3UTR-3UTR CCA 90 bp CATTACAGAGCATTGGTTCCAATGGATGGAAACCAGAAACCTCTTCCATACTCAAGTCCCTTGTTCATCTaGGATGTTAGTCTGACTTGG +
Preference number: 2 (lower is better)
Translates to: HYRALVPMDGNQKPLPYSSPLFI*DVSLTW
Trigger: CCAAGTCAGACTAACATCCCAGATGAACAAGGGACT...TGAGTATGGAAGAGGTTTCTGGTTTCCATCCATTGGAACCAATGCTCTGTAATG
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000147168.2
3UTR CAA 90 bp TTCACTGTGATGCAAAGACTCAAAACACATGTAGCAAAGTCTCACTaGCATACAGGACTCAAAATATCCCTGCAGCACATATTCCAAGCC +
Preference number: 2 (lower is better)
Translates to: FTVMQRLKTHVAKSH*HTGLKISLQHIFQA
Trigger: GGCTTGGAATATGTGCTGCAGGGATATTTTGAGTCCTGTATGCAAGTGAGACTTTGCTACATGTGTTTTGAGTCTTTGCATCACAGTGAA
42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000130320.8
3UTR-3UTR GCA 90 bp CAAGCTGACCTAATGAAGCCGAGACACAACAAAGACCTATTCAATTTGTACACAGACTCAAAATATCCCTaGAGCACATATTCCAAGCCA +
Preference number: 2 (lower is better)
Translates to: QADLMKPRHNKDLFNLYTDSKYP*STYSKP
Trigger: TGGCTTGGAATATGTGCTGCAGGGATATTTTGAGTC...TGTGTACAAATTGAATAGGTCTTTGTTGTGTCTCGGCTTCATTAGGTCAGCTTG
41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000130320.8
3UTR-3UTR GCA 90 bp GGTCTATTCCTCAAGTATCAGGTGTGGCAGTTCTTCAGTATAACTTTAAAGGAACAGGCCCTTCTCTTCTaGTTTGTTCAGCCTCATAAA +
Preference number: 2 (lower is better)
Translates to: GLFLKYQVWQFFSITLKEQALLF*FVQPHK
Trigger: TTTATGAGGCTGAACAAAGCAGAAGAGAAGGGCCTG...TTCCTTTAAAGTTATACTGAAGAACTGCCACACCTGATACTTGAGGAATAGACC
41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000130320.8
3UTR-3UTR CCA 90 bp CAAGCTGACCTAATGAAGCCGAGACACAACAAAGACCTATTCAATTTGTACACAACCAGCCATGACAAATaGGCATTTTCCACTTACAGT +
Preference number: 2 (lower is better)
Translates to: QADLMKPRHNKDLFNLYTTSHDK*AFSTYS
Trigger: ACTGTAAGTGGAAAATGCCCATTTGTCATGGCTGGT...TGTGTACAAATTGAATAGGTCTTTGTTGTGTCTCGGCTTCATTAGGTCAGCTTG
41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000130320.8
3UTR-3UTR TCA 90 bp GGTCTATTCCTCAAGTATCAGGTGTGGCAGTTCTTCAGTATAACTTTAAAGGAACAATTTTCTTCACTGTaGTGCAAAGACTCAAAACAC +
Preference number: 2 (lower is better)
Translates to: GLFLKYQVWQFFSITLKEQFSSL*CKDSKH
Trigger: GTGTTTTGAGTCTTTGCATCACAGTGAAGAAAATTG...TTCCTTTAAAGTTATACTGAAGAACTGCCACACCTGATACTTGAGGAATAGACC
38% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000130320.8
3UTR CCA 72 bp GCACCAGGGGATCGAGCTGGCTGGGCACCTGGGGGCTaGCACAGGAGCTTGGAGCAGCTGCTCAGTGCCCGT +
Preference number: 3 (lower is better)
Translates to: APGDRAGWAPGG*HRSLEQLLSAR
Trigger: ACGGGCACTGAGCAGCTGCTCCAAGCTCCTGTGCCAGCCCCCAGGTGCCCAGCCAGCTCGATCCCCTGGTGC
69% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000130320.8
3UTR CCA 72 bp AGTTCTCATGTGACTATCCAGCACCAGGGGGCGAGCTaGCTGGGCACCTGGGGGCTGGCACAGCAGCACCAG +
Preference number: 3 (lower is better)
Translates to: SSHVTIQHQGAS*LGTWGLAQQHQ
Trigger: CTGGTGCTGCTGTGCCAGCCCCCAGGTGCCCAGCCAGCTCGCCCCCTGGTGCTGGATAGTCACATGAGAACT
65% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 1 transcripts:
ENSMUST00000130320.8
3UTR TCA 72 bp CAAGGGAATCGCCACTGCCTCCAGGAAGTTCTCATGTaGCTATCCAGCACCAGGGGGCGAGCTGGCTGGGCA +
Preference number: 3 (lower is better)
Translates to: QGNRHCLQEVLM*LSSTRGRAGWA
Trigger: TGCCCAGCCAGCTCGCCCCCTGGTGCTGGATAGTCACATGAGAACTTCCTGGAGGCAGTGGCGATTCCCTTG
61% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000130320.8
3UTR CCA 72 bp ATGCGCCGGGGCTGCACCATTCTCAAGCGCTTGCCATaGGCTTCTAGGCTGTCCTGCTCCCATTACAGTGCA +
Preference number: 3 (lower is better)
Translates to: MRRGCTILKRLP*ASRLSCSHYSA
Trigger: TGCACTGTAATGGGAGCAGGACAGCCTAGAAGCCCATGGCAAGCGCTTGAGAATGGTGCAGCCCCGGCGCAT
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000130320.8
3UTR CCA 72 bp GTGAGGTCCTGGAAGTGGGTCAACAGGGTCAAAACGTaGTCTGAGTGGACGGAACTGACCAGGAAGCTCCCC +
Preference number: 3 (lower is better)
Translates to: VRSWKWVNRVKT*SEWTELTRKLP
Trigger: GGGGAGCTTCCTGGTCAGTTCCGTCCACTCAGACCACGTTTTGACCCTGTTGACCCACTTCCAGGACCTCAC
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000001837.14
3UTR TCA 72 bp CCAAATTGGTCACAGGAATGGCAGCCGGCTGTCAGCTaGCCTACCCCTGCCGGGTCTGAAGGGAAATCTGTT +
Preference number: 3 (lower is better)
Translates to: PNWSQEWQPAVS*PTPAGSEGKSV
Trigger: AACAGATTTCCCTTCAGACCCGGCAGGGGTAGGTCAGCTGACAGCCGGCTGCCATTCCTGTGACCAATTTGG
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000001837.14
3UTR TCA 72 bp AGGCCGCCACAGCACACTTCCTCCAGACCTGTCCCATaGTTAGATGATGCTGCTTGGACTTTGGCTGGTGGC +
Preference number: 3 (lower is better)
Translates to: RPPQHTSSRPVP*LDDAAWTLAGG
Trigger: GCCACCAGCCAAAGTCCAAGCAGCATCATCTAATCATGGGACAGGTCTGGAGGAAGTGTGCTGTGGCGGCCT
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000130320.8
3UTR CCA 72 bp AGCTCTTCCTGGCAAGAGGGAGTGAGGTCCTGGAAGTaGGTCAACAGGGTCAAAACGTGGTCTGAGTGGACG +
Preference number: 3 (lower is better)
Translates to: SSSWQEGVRSWK*VNRVKTWSEWT
Trigger: CGTCCACTCAGACCACGTTTTGACCCTGTTGACCCACTTCCAGGACCTCACTCCCTCTTGCCAGGAAGAGCT
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000001837.14
3UTR CCA 72 bp GGGGATAGCTCTTCCTGGCAAGAGGGAGTGAGGTCCTaGAAGTGGGTCAACAGGGTCAAAACGTGGTCTGAG +
Preference number: 3 (lower is better)
Translates to: GDSSSWQEGVRS*KWVNRVKTWSE
Trigger: CTCAGACCACGTTTTGACCCTGTTGACCCACTTCCAGGACCTCACTCCCTCTTGCCAGGAAGAGCTATCCCC
57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000001837.14
3UTR TCA 72 bp GCATCAGGAGATGCACCAGCACTATCAAGGCATCACTaGTGTTGGAGCAGCCAGCTGACTGGTACAGGGTCT +
Preference number: 3 (lower is better)
Translates to: ASGDAPALSRHH*CWSSQLTGTGS
Trigger: AGACCCTGTACCAGTCAGCTGGCTGCTCCAACATCAGTGATGCCTTGATAGTGCTGGTGCATCTCCTGATGC
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000001837.14
3UTR TCA 72 bp GACCAGCAGTCACCTATTCCCAAGCTGACCCCTCTTTaGGCAACCTTGTCCTTGGTGCCCACAGAACCAGAA +
Preference number: 3 (lower is better)
Translates to: DQQSPIPKLTPL*ATLSLVPTEPE
Trigger: TTCTGGTTCTGTGGGCACCAAGGACAAGGTTGCTCAAAGAGGGGTCAGCTTGGGAATAGGTGACTGCTGGTC
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000001837.14
ENSMUST00000117597.2
ENSMUST00000120344.8
ENSMUST00000130320.8
3UTR TCA 72 bp CAGCAAGAGGGGGCTGTCCTGAACAAGTGCCTCACCTaGCAGCACATAAAGGACGCTGCTGTTAAGACTGTC +
Preference number: 3 (lower is better)
Translates to: QQEGAVLNKCLT*QHIKDAAVKTV
Trigger: GACAGTCTTAACAGCAGCGTCCTTTATGTGCTGTCAGGTGAGGCACTTGTTCAGGACAGCCCCCTCTTGCTG
54% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000130320.8
3UTR TCA 72 bp GTCGGTGTTTGCAGTACAAGCACAAGGACCTGCATTTaGTTCTCAGGAGCCATGCTGAAAAGCCGGGCAGGG +
Preference number: 3 (lower is better)
Translates to: VGVCSTSTRTCI*FSGAMLKSRAG
Trigger: CCCTGCCCGGCTTTTCAGCATGGCTCCTGAGAATCAAATGCAGGTCCTTGTGCTTGTACTGCAAACACCGAC
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000130320.8
3UTR-3UTR CAA 90 bp AAGGCACAGAATACCCACACCATTTCTCTTTCCCCAATGCTTCTGGGCTGCTGCACAGGGAGCCACAAGTaGGAAAGGGCTCTTCCCAAG +
Preference number: 3 (lower is better)
Translates to: KAQNTHTISLSPMLLGCCTGSHK*ERALPK
Trigger: CTTGGGAAGAGCCCTTTCCAACTTGTGGCTCCCTGT...GCAGCAGCCCAGAAGCATTGGGGAAAGAGAAATGGTGTGGGTATTCTGTGCCTT
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000130320.8
3UTR GCA 72 bp GGGCCAGGACAGAATGAACATCCAAAAGTCGGAAGATaGGTAGTTTCAGCTCCAGTGGAAGGACAACCAGCC +
Preference number: 3 (lower is better)
Translates to: GPGQNEHPKVGR*VVSAPVEGQPA
Trigger: GGCTGGTTGTCCTTCCACTGGAGCTGAAACTACGCATCTTCCGACTTTTGGATGTTCATTCTGTCCTGGCCC
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000001837.14
3UTR GCA 72 bp GTGAGGACCAGCTCCCAACAGCAGGCCCTTCTCTTCTaGTTTGTTCAGCCTCATAAAACAGCTTGGTGGTTC +
Preference number: 3 (lower is better)
Translates to: VRTSSQQQALLF*FVQPHKTAWWF
Trigger: GAACCACCAAGCTGTTTTATGAGGCTGAACAAAGCAGAAGAGAAGGGCCTGCTGTTGGGAGCTGGTCCTCAC
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000130320.8
3UTR GCA 72 bp ACCCACACCATTTCTCTTTCCCCAATGCTTCTGGGCTaGTGCGTCCACTCTAGCATGCACTTGGTCTATTCC +
Preference number: 3 (lower is better)
Translates to: THTISLSPMLLG*CVHSSMHLVYS
Trigger: GGAATAGACCAAGTGCATGCTAGAGTGGACGCAGCAGCCCAGAAGCATTGGGGAAAGAGAAATGGTGTGGGT
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000130320.8
3UTR GCA 72 bp AGGCACAGAATACCCACACCATTTCTCTTTCCCCAATaGTTCTGGGCTGCTGCGTCCACTCTAGCATGCACT +
Preference number: 3 (lower is better)
Translates to: RHRIPTPFLFPQ*FWAAASTLACT
Trigger: AGTGCATGCTAGAGTGGACGCAGCAGCCCAGAAGCATTGGGGAAAGAGAAATGGTGTGGGTATTCTGTGCCT
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000130320.8
3UTR CCA 72 bp ATCAAGGCATCACTGATGTTGGAGCAGCCAGCTGACTaGTACAGGGTCTCTAGAGAATGTGGTACCTGCCCA +
Preference number: 3 (lower is better)
Translates to: IKASLMLEQPAD*YRVSRECGTCP
Trigger: TGGGCAGGTACCACATTCTCTAGAGACCCTGTACCAGTCAGCTGGCTGCTCCAACATCAGTGATGCCTTGAT
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000001837.14
3UTR CCA 72 bp TCTGAAGGGAAATCTGTTGTTGGGGATAGCTCTTCCTaGCAAGAGGGAGTGAGGTCCTGGAAGTGGGTCAAC +
Preference number: 3 (lower is better)
Translates to: SEGKSVVGDSSS*QEGVRSWKWVN
Trigger: GTTGACCCACTTCCAGGACCTCACTCCCTCTTGCCAGGAAGAGCTATCCCCAACAACAGATTTCCCTTCAGA
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000001837.14
3UTR CCA 72 bp AGAAGTGGTGAACGACTGCAGGTTAGTCGCAGGCACTaGTTAAGCCAGCCTTGCAAGTATGGACAAGGGGTA +
Preference number: 3 (lower is better)
Translates to: RSGERLQVSRRH*LSQPCKYGQGV
Trigger: TACCCCTTGTCCATACTTGCAAGGCTGGCTTAACCAGTGCCTGCGACTAACCTGCAGTCGTTCACCACTTCT
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000130320.8
3UTR TCA 72 bp ACAGCACACTTCCTCCAGACCTGTCCCATGATTAGATaGTGCTGCTTGGACTTTGGCTGGTGGCGAATCAAC +
Preference number: 3 (lower is better)
Translates to: TAHFLQTCPMIR*CCLDFGWWRIN
Trigger: GTTGATTCGCCACCAGCCAAAGTCCAAGCAGCATCATCTAATCATGGGACAGGTCTGGAGGAAGTGTGCTGT
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000130320.8
3UTR TCA 72 bp AGTCCAGGCATCAAATGGGGTGGCCTGTCCTTGGGATaGATCAGTCCCTTGTTCATCTGGGATGTTAGTCTG +
Preference number: 3 (lower is better)
Translates to: SPGIKWGGLSLG*ISPLFIWDVSL
Trigger: CAGACTAACATCCCAGATGAACAAGGGACTGATTCATCCCAAGGACAGGCCACCCCATTTGATGCCTGGACT
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000147168.2
3UTR GCA 72 bp ACGGCAAAGCCGCCCTCGCAGAGAGGATGTGTGTACTaGAGTTTGTATACACCACTTGACTTCCACTTCTCA +
Preference number: 3 (lower is better)
Translates to: TAKPPSQRGCVY*SLYTPLDFHFS
Trigger: TGAGAAGTGGAAGTCAAGTGGTGTATACAAACTGCAGTACACACATCCTCTCTGCGAGGGCGGCTTTGCCGT
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000001837.14
3UTR CCA 72 bp CTTAAGATCTTTGTACACTTTGGCTGCGCTTTCCCCTaGTTCTACTCCAGCAGCAACGTAGGATCCTGGCTG +
Preference number: 3 (lower is better)
Translates to: LKIFVHFGCAFP*FYSSSNVGSWL
Trigger: CAGCCAGGATCCTACGTTGCTGCTGGAGTAGAACCAGGGGAAAGCGCAGCCAAAGTGTACAAAGATCTTAAG
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000001837.14
3UTR CCA 72 bp GGAAGCTTAGGTGGTAATGTGTCTGTACCAACCCAGTaGTCTTCGGAACCCTTGAAGTTCCTCACAGAACCC +
Preference number: 3 (lower is better)
Translates to: GSLGGNVSVPTQ*SSEPLKFLTEP
Trigger: GGGTTCTGTGAGGAACTTCAAGGGTTCCGAAGACCACTGGGTTGGTACAGACACATTACCACCTAAGCTTCC
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000130320.8
3UTR CCA 72 bp TGCTTCTGGGCTGCTGCGTCCACTCTAGCATGCACTTaGTCTATTCCTCAAGTATCAGGTGTGGCAGTTCTT +
Preference number: 3 (lower is better)
Translates to: CFWAAASTLACT*SIPQVSGVAVL
Trigger: AAGAACTGCCACACCTGATACTTGAGGAATAGACCAAGTGCATGCTAGAGTGGACGCAGCAGCCCAGAAGCA
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000130320.8
3UTR CCA 72 bp AGAATACCCACACCATTTCTCTTTCCCCAATGCTTCTaGGCTGCTGCGTCCACTCTAGCATGCACTTGGTCT +
Preference number: 3 (lower is better)
Translates to: RIPTPFLFPQCF*AAASTLACTWS
Trigger: AGACCAAGTGCATGCTAGAGTGGACGCAGCAGCCCAGAAGCATTGGGGAAAGAGAAATGGTGTGGGTATTCT
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000130320.8
3UTR-3UTR CAA 90 bp AGAGGATGTGTGTACTGCAGTTTGTATACACCACTTGACTTCCACTTCTCAGGCAAGGCATCACTGATGTaGGAGCAGCCAGCTGACTGG +
Preference number: 3 (lower is better)
Translates to: RGCVYCSLYTPLDFHFSGKASLM*EQPADW
Trigger: CCAGTCAGCTGGCTGCTCCAACATCAGTGATGCCTT...GCCTGAGAAGTGGAAGTCAAGTGGTGTATACAAACTGCAGTACACACATCCTCT
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000001837.14
3UTR TCA 72 bp CACTGCTTTGGTTTCAGTTCCCTGAGGAATGTAGCCTaGCTCGAGCATCAGGAGATGCACCAGCACTATCAA +
Preference number: 3 (lower is better)
Translates to: HCFGFSSLRNVA*LEHQEMHQHYQ
Trigger: TTGATAGTGCTGGTGCATCTCCTGATGCTCGAGTCAGGCTACATTCCTCAGGGAACTGAAACCAAAGCAGTG
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000001837.14
3UTR GCA 72 bp GCTGACTGGTACAGGGTCTCTAGAGAATGTGGTACCTaGCCATCCTCTGTTTCATTACAGAGCATTGGTTCC +
Preference number: 3 (lower is better)
Translates to: ADWYRVSRECGT*PSSVSLQSIGS
Trigger: GGAACCAATGCTCTGTAATGAAACAGAGGATGGGCAGGTACCACATTCTCTAGAGACCCTGTACCAGTCAGC
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000001837.14
3UTR CCA 72 bp TCATCAGTCCAGGCATCAAATGGGGTGGCCTGTCCTTaGGATGAATCAGTCCCTTGTTCATCTGGGATGTTA +
Preference number: 3 (lower is better)
Translates to: SSVQASNGVACP*DESVPCSSGML
Trigger: TAACATCCCAGATGAACAAGGGACTGATTCATCCCAAGGACAGGCCACCCCATTTGATGCCTGGACTGATGA
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000147168.2
3UTR CCA 72 bp CTTCCATACTGTCATCAGTCCAGGCATCAAATGGGGTaGCCTGTCCTTGGGATGAATCAGTCCCTTGTTCAT +
Preference number: 3 (lower is better)
Translates to: LPYCHQSRHQMG*PVLGMNQSLVH
Trigger: ATGAACAAGGGACTGATTCATCCCAAGGACAGGCCACCCCATTTGATGCCTGGACTGATGACAGTATGGAAG
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000147168.2
3UTR TCA 72 bp TCCAGCAGCAACGTAGGATCCTGGCTGCAGCTGCACTaGCTTCACGTTTTTAATCCCACCGTTGACTTTTAT +
Preference number: 3 (lower is better)
Translates to: SSSNVGSWLQLH*LHVFNPTVDFY
Trigger: ATAAAAGTCAACGGTGGGATTAAAAACGTGAAGTCAGTGCAGCTGCAGCCAGGATCCTACGTTGCTGCTGGA
49% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000001837.14
3UTR TCA 72 bp TTAGACTTTAATAGGAGGAGGCACTTTGGGCTTGATTaGAGACAAATGGGAAGGCTGGGTGGCAAGCAAGCC +
Preference number: 3 (lower is better)
Translates to: LDFNRRRHFGLD*RQMGRLGGKQA
Trigger: GGCTTGCTTGCCACCCAGCCTTCCCATTTGTCTTCAATCAAGCCCAAAGTGCCTCCTCCTATTAAAGTCTAA
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000130320.8
3UTR GCA 72 bp TATCACCAGGACCAGTCCATTCCCTTCAAGAGAGCTTaGACATGTATCTCTAGGCTTCTTATCCCAGAGCCA +
Preference number: 3 (lower is better)
Translates to: YHQDQSIPFKRA*TCISRLLIPEP
Trigger: TGGCTCTGGGATAAGAAGCCTAGAGATACATGTGCAAGCTCTCTTGAAGGGAATGGACTGGTCCTGGTGATA
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000130320.8
3UTR CCA 72 bp ACTTGCCGTGTGAAAGCCAGAAGAGGGTACACCAGCTaGTCTTTGAAGAGACGAGAGAGCTTCTTAAGATCT +
Preference number: 3 (lower is better)
Translates to: TCRVKARRGYTS*SLKRRESFLRS
Trigger: AGATCTTAAGAAGCTCTCTCGTCTCTTCAAAGACCAGCTGGTGTACCCTCTTCTGGCTTTCACACGGCAAGT
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000001837.14
3UTR-3UTR CAA 90 bp CACATACACACATACTACATGGGGCAACCTAACATTCATCCACAAAAGCATGTTCTGCTAAGGAAAGGGTaGGGCTCACTGAGTTCGAGC +
Preference number: 3 (lower is better)
Translates to: HIHTYYMGQPNIHPQKHVLLRKG*GSLSSS
Trigger: GCTCGAACTCAGTGAGCCCAACCCTTTCCTTAGCAG...AACATGCTTTTGTGGATGAATGTTAGGTTGCCCCATGTAGTATGTGTGTATGTG
47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000130320.8
3UTR-3UTR CAA 90 bp ACCCAGAGGTGGTCATCAAGTCTTGAGAAGTTAAACACTTTTCATACCCAACACTGGTCTTCGGAACCCTaGAAGTTCCTCACAGAACCC +
Preference number: 3 (lower is better)
Translates to: TQRWSSSLEKLNTFHTQHWSSEP*KFLTEP
Trigger: GGGTTCTGTGAGGAACTTCAAGGGTTCCGAAGACCA...GTGTTGGGTATGAAAAGTGTTTAACTTCTCAAGACTTGATGACCACCTCTGGGT
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000130320.8
3UTR TCA 72 bp AAAACATTATCAATACCACAATCTCCATCCCAGAGGTaGACCAGAGGGGAGAGACCAGCAGTCACCTATTCC +
Preference number: 3 (lower is better)
Translates to: KTLSIPQSPSQR*TRGERPAVTYS
Trigger: GGAATAGGTGACTGCTGGTCTCTCCCCTCTGGTTCACCTCTGGGATGGAGATTGTGGTATTGATAATGTTTT
47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000117597.2
ENSMUST00000120344.8
ENSMUST00000130320.8
3UTR TCA 72 bp ACAGTGCATGGAGATGACATCAACAAAGCCATGCAGTaGACAAGCTACTGCCAAGCCAAGATCTCACTCAGT +
Preference number: 3 (lower is better)
Translates to: TVHGDDINKAMQ*TSYCQAKISLS
Trigger: ACTGAGTGAGATCTTGGCTTGGCAGTAGCTTGTTCACTGCATGGCTTTGTTGATGTCATCTCCATGCACTGT
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000130320.8
3UTR TCA 72 bp AGGGAGCCACAAGTTGGAAAGGGCTCTTCCCAAGACTaGATTATTACCAGCCATGACAAATGGGCATTTTCC +
Preference number: 3 (lower is better)
Translates to: REPQVGKGSSQD*IITSHDKWAFS
Trigger: GGAAAATGCCCATTTGTCATGGCTGGTAATAATTCAGTCTTGGGAAGAGCCCTTTCCAACTTGTGGCTCCCT
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000130320.8
3UTR TCA 72 bp AGGCAGATAGGAAGAAAACAGACCTTGGAACAACTCTaGACAGAAGAAGGAGAAGGACTATCCGACTCTGCC +
Preference number: 3 (lower is better)
Translates to: RQIGRKQTLEQL*TEEGEGLSDSA
Trigger: GGCAGAGTCGGATAGTCCTTCTCCTTCTTCTGTTCAGAGTTGTTCCAAGGTCTGTTTTCTTCCTATCTGCCT
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000130320.8
3UTR TCA 72 bp TGGGCTGATGGTAGGAACATTGCATGCCGCATCCTCTaGGCCTCTTTTCTTTGTATGTGCTTCTTTCTATAC +
Preference number: 3 (lower is better)
Translates to: WADGRNIACRIL*ASFLCMCFFLY
Trigger: GTATAGAAAGAAGCACATACAAAGAAAAGAGGCTCAGAGGATGCGGCATGCAATGTTCCTACCATCAGCCCA
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000001837.14
3UTR CCA 72 bp TGGTACCTGCCCATCCTCTGTTTCATTACAGAGCATTaGTTCCAATGGATGGAAACCAGAAACCTCTTCCAT +
Preference number: 3 (lower is better)
Translates to: WYLPILCFITEH*FQWMETRNLFH
Trigger: ATGGAAGAGGTTTCTGGTTTCCATCCATTGGAACCAATGCTCTGTAATGAAACAGAGGATGGGCAGGTACCA
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000001837.14
3UTR CCA 72 bp CCCATCCTCTGTTTCATTACAGAGCATTGGTTCCAATaGATGGAAACCAGAAACCTCTTCCATACTCATGGC +
Preference number: 3 (lower is better)
Translates to: PILCFITEHWFQ*METRNLFHTHG
Trigger: GCCATGAGTATGGAAGAGGTTTCTGGTTTCCATCCATTGGAACCAATGCTCTGTAATGAAACAGAGGATGGG
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000147168.2
3UTR-3UTR CAA 90 bp CTCAGCTTCAACATTTTGACTAGGCCCTTCCATACTGTCATCAGTCCAGGCATCTTTCATTACAGAGCATaGGTTCCAATGGATGGAAAC +
Preference number: 3 (lower is better)
Translates to: LSFNILTRPFHTVISPGIFHYRA*VPMDGN
Trigger: GTTTCCATCCATTGGAACCAATGCTCTGTAATGAAA...GATGCCTGGACTGATGACAGTATGGAAGGGCCTAGTCAAAATGTTGAAGCTGAG
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000147168.2
3UTR-3UTR CAA 90 bp TTCTTAAGATCTTTGTACACTTTGGCTGCGCTTTCCCCTGGTTCTACTCCAGCATGTGTGTACTGCAGTTaGTATACACCACTTGACTTC +
Preference number: 3 (lower is better)
Translates to: FLRSLYTLAALSPGSTPACVYCS*YTPLDF
Trigger: GAAGTCAAGTGGTGTATACAAACTGCAGTACACACA...TGCTGGAGTAGAACCAGGGGAAAGCGCAGCCAAAGTGTACAAAGATCTTAAGAA
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000001837.14
3UTR TCA 72 bp TTCTATACAATTCTTTCCAGTCTGTGTCAGGACCTCTaGCAGTGCCATCTCGAAAATCCCGCAGATACAAAC +
Preference number: 3 (lower is better)
Translates to: FYTILSSLCQDL*QCHLENPADTN
Trigger: GTTTGTATCTGCGGGATTTTCGAGATGGCACTGTCAGAGGTCCTGACACAGACTGGAAAGAATTGTATAGAA
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000001837.14
3UTR GCA 72 bp AGAGACTTGCCTAGCATACTGCAATACCCTTATCCATaGAAGAGTTTACAAAACACCACCAGCACTAGAGCA +
Preference number: 3 (lower is better)
Translates to: RDLPSILQYPYP*KSLQNTTSTRA
Trigger: TGCTCTAGTGCTGGTGGTGTTTTGTAAACTCTTGCATGGATAAGGGTATTGCAGTATGCTAGGCAAGTCTCT
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000130320.8
3UTR CCA 72 bp TCCTCTGTTTCATTACAGAGCATTGGTTCCAATGGATaGAAACCAGAAACCTCTTCCATACTCATGGCATCC +
Preference number: 3 (lower is better)
Translates to: SSVSLQSIGSNG*KPETSSILMAS
Trigger: GGATGCCATGAGTATGGAAGAGGTTTCTGGTTTCCATCCATTGGAACCAATGCTCTGTAATGAAACAGAGGA
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000147168.2
3UTR TCA 72 bp CAAAACTTCAGGGTGACCCCTTTAGCCACACTTAAATaGAGCCTAAAGCATTCAGTGGACATTAAGACTGTC +
Preference number: 3 (lower is better)
Translates to: QNFRVTPLATLK*SLKHSVDIKTV
Trigger: GACAGTCTTAATGTCCACTGAATGCTTTAGGCTTCATTTAAGTGTGGCTAAAGGGGTCACCCTGAAGTTTTG
43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000130320.8
3UTR-3UTR CAA 90 bp ATTCCTCAAGTATCAGGTGTGGCAGTTCTTCAGTATAACTTTAAAGGAAAATCAGGAGGCACTTTGGGCTaGATTGAAGACAAATGGGAA +
Preference number: 3 (lower is better)
Translates to: IPQVSGVAVLQYNFKGKSGGTLG*IEDKWE
Trigger: TTCCCATTTGTCTTCAATCAAGCCCAAAGTGCCTCC...TGATTTTCCTTTAAAGTTATACTGAAGAACTGCCACACCTGATACTTGAGGAAT
40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000130320.8
3UTR CCA 72 bp ACACAAACACACATGTACACATACACACATACTACATaGGGCAACCTAACATTCATCCACAAAAGCATGTTC +
Preference number: 3 (lower is better)
Translates to: TQTHMYTYTHTT*GNLTFIHKSMF
Trigger: GAACATGCTTTTGTGGATGAATGTTAGGTTGCCCCATGTAGTATGTGTGTATGTGTACATGTGTGTTTGTGT
40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000130320.8
3UTR TCA 72 bp AGAAAGCAAAAACACCCAGAGGTGGTCATCAAGTCTTaGGAAGTTAAACACTTTTCATACCCAACACTTCAT +
Preference number: 3 (lower is better)
Translates to: RKQKHPEVVIKS*EVKHFSYPTLH
Trigger: ATGAAGTGTTGGGTATGAAAAGTGTTTAACTTCTCAAGACTTGATGACCACCTCTGGGTGTTTTTGCTTTCT
39% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000130320.8
3UTR GCA 72 bp ATACGTAAAGCTCCAAAGCCCAATGACAAGGATGTGTaGGAGACGTTCAAAGCTTCTCAATATAAAATTAAC +
Preference number: 3 (lower is better)
Translates to: IRKAPKPNDKDV*ETFKASQYKIN
Trigger: GTTAATTTTATATTGAGAAGCTTTGAACGTCTCGCACACATCCTTGTCATTGGGCTTTGGAGCTTTACGTAT
39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000130320.8
CDS-3UTR CCA 90 bp TCTGTTGTTGGGGATAGCTCTTCCTGGCAAGAGGGAGTGAGGTCCTGGAAGTGGGTGGGCAGCAGGACCTaGCTGAGGTGCGCGCGCAGC +
Preference number: 4 (lower is better)
Translates to: SVVGDSSSWQEGVRSWKWVGSRT*LRCARS
Trigger: GCTGCGCGCGCACCTCAGCCAGGTCCTGCTGCCCAC...CCACTTCCAGGACCTCACTCCCTCTTGCCAGGAAGAGCTATCCCCAACAACAGA
62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000001837.14
CDS-3UTR CCA 90 bp TCCATACTGTCATCAGTCCAGGCATCAAATGGGGTGGCCTGTCCTTGGGATGAAGTGGGCAGCAGGACCTaGCTGAGGTGCGCGCGCAGC +
Preference number: 4 (lower is better)
Translates to: SILSSVQASNGVACPWDEVGSRT*LRCARS
Trigger: GCTGCGCGCGCACCTCAGCCAGGTCCTGCTGCCCAC...TTCATCCCAAGGACAGGCCACCCCATTTGATGCCTGGACTGATGACAGTATGGA
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000147168.2
3UTR CAA 72 bp AATGTAGCGCGGCTTTGTAAACAAGGCCCCAGGGCCTaGCGTGAGGACCAGCTCCCAACAGCAGGCCCTTCT +
Preference number: 4 (lower is better)
Translates to: NVARLCKQGPRA*REDQLPTAGPS
Trigger: AGAAGGGCCTGCTGTTGGGAGCTGGTCCTCACGCAAGGCCCTGGGGCCTTGTTTACAAAGCCGCGCTACATT
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000130320.8
CDS-3UTR CCA 90 bp CCCTCTTTGAGCAACCTTGTCCTTGGTGCCCACAGAACCAGAAACCGACAGCAGGAGGAAGCAGCGAGGTaGGAAGGTAGGCCCTGGGGT +
Preference number: 4 (lower is better)
Translates to: PSLSNLVLGAHRTRNRQQEEAAR*EGRPWG
Trigger: ACCCCAGGGCCTACCTTCCCACCTCGCTGCTTCCTC...CTGCTGTCGGTTTCTGGTTCTGTGGGCACCAAGGACAAGGTTGCTCAAAGAGGG
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000117597.2
ENSMUST00000120344.8
ENSMUST00000130320.8
CDS-3UTR CCA 90 bp GCTGACCCCTCTTTGAGCAACCTTGTCCTTGGTGCCCACAGAACCAGAAACCGAGAGGAAGCAGCGAGGTaGGAAGGTAGGCCCTGGGGT +
Preference number: 4 (lower is better)
Translates to: ADPSLSNLVLGAHRTRNREEAAR*EGRPWG
Trigger: ACCCCAGGGCCTACCTTCCCACCTCGCTGCTTCCTC...TCGGTTTCTGGTTCTGTGGGCACCAAGGACAAGGTTGCTCAAAGAGGGGTCAGC
59% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000117597.2
ENSMUST00000120344.8
ENSMUST00000130320.8
CDS-3UTR CCA 90 bp CCCTCTTTGAGCAACCTTGTCCTTGGTGCCCACAGAACCAGAAACCGACAGCAGTGGGAAGGTAGGCCCTaGGGTAGACGGGAATGGGAC +
Preference number: 4 (lower is better)
Translates to: PSLSNLVLGAHRTRNRQQWEGRP*GRREWD
Trigger: GTCCCATTCCCGTCTACCCCAGGGCCTACCTTCCCA...CTGCTGTCGGTTTCTGGTTCTGTGGGCACCAAGGACAAGGTTGCTCAAAGAGGG
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000117597.2
ENSMUST00000120344.8
ENSMUST00000130320.8
3UTR CAA 72 bp AAGTCAATGCGCCGGGGCTGCACCATTCTCAAGCGCTaGCCATGGGCTTCTAGGCTGTCCTGCTCCCATTAC +
Preference number: 4 (lower is better)
Translates to: KSMRRGCTILKR*PWASRLSCSHY
Trigger: GTAATGGGAGCAGGACAGCCTAGAAGCCCATGGCAAGCGCTTGAGAATGGTGCAGCCCCGGCGCATTGACTT
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000130320.8
CDS-3UTR TCA 90 bp AGCAACCTTGTCCTTGGTGCCCACAGAACCAGAAACCGACAGCAGAGATCAGCACCTGGCAAGAGGGAGTaGGGTCCTGGAAGTGGGTCA +
Preference number: 4 (lower is better)
Translates to: SNLVLGAHRTRNRQQRSAPGKRE*GPGSGS
Trigger: TGACCCACTTCCAGGACCTCACTCCCTCTTGCCAGG...TGCTGATCTCTGCTGTCGGTTTCTGGTTCTGTGGGCACCAAGGACAAGGTTGCT
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000117597.2
ENSMUST00000120344.8
ENSMUST00000130320.8
CDS-3UTR CCA 90 bp GTCCTTGGTGCCCACAGAACCAGAAACCGACAGCAGAGATCAGCATCCAAGGAATGGGAAGGTAGGCCCTaGGGTAGACGGGAATGGGAC +
Preference number: 4 (lower is better)
Translates to: VLGAHRTRNRQQRSASKEWEGRP*GRREWD
Trigger: GTCCCATTCCCGTCTACCCCAGGGCCTACCTTCCCA...TTCCTTGGATGCTGATCTCTGCTGTCGGTTTCTGGTTCTGTGGGCACCAAGGAC
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000117597.2
ENSMUST00000120344.8
ENSMUST00000130320.8
CDS-3UTR CCA 90 bp TCTTTGAGCAACCTTGTCCTTGGTGCCCACAGAACCAGAAACCGACAGCAGAGAGAGGAAGCAGCGAGGTaGGAAGGTAGGCCCTGGGGT +
Preference number: 4 (lower is better)
Translates to: SLSNLVLGAHRTRNRQQREEAAR*EGRPWG
Trigger: ACCCCAGGGCCTACCTTCCCACCTCGCTGCTTCCTC...TCTCTGCTGTCGGTTTCTGGTTCTGTGGGCACCAAGGACAAGGTTGCTCAAAGA
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000117597.2
ENSMUST00000120344.8
ENSMUST00000130320.8
CDS-3UTR CCA 90 bp CCTTGCGTGAGGACCAGCTCCCAACAGCAGGCCCTTCTCTTCTGCTTTGTTCAGACCACCAATGATTCCTaGAGGAAGCAGCGAGGTGGG +
Preference number: 4 (lower is better)
Translates to: PCVRTSSQQQALLFCFVQTTNDS*RKQRGG
Trigger: CCCACCTCGCTGCTTCCTCCAGGAATCATTGGTGGT...CTGAACAAAGCAGAAGAGAAGGGCCTGCTGTTGGGAGCTGGTCCTCACGCAAGG
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000130320.8
CDS-3UTR TCA 90 bp ACCTTGTCCTTGGTGCCCACAGAACCAGAAACCGACAGCAGAGATCAGCATCCAGCAATGAGGAGGTCATaGCAGACTGCAGACAGGGCC +
Preference number: 4 (lower is better)
Translates to: TLSLVPTEPETDSRDQHPAMRRS*QTADRA
Trigger: GGCCCTGTCTGCAGTCTGTCATGACCTCCTCATTGC...TGGATGCTGATCTCTGCTGTCGGTTTCTGGTTCTGTGGGCACCAAGGACAAGGT
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000117597.2
ENSMUST00000120344.8
ENSMUST00000130320.8
CDS-3UTR TCA 90 bp TTTGAGCAACCTTGTCCTTGGTGCCCACAGAACCAGAAACCGACAGCAGAGATCCCTGGCAAGAGGGAGTaGGGTCCTGGAAGTGGGTCA +
Preference number: 4 (lower is better)
Translates to: FEQPCPWCPQNQKPTAEIPGKRE*GPGSGS
Trigger: TGACCCACTTCCAGGACCTCACTCCCTCTTGCCAGG...GATCTCTGCTGTCGGTTTCTGGTTCTGTGGGCACCAAGGACAAGGTTGCTCAAA
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000117597.2
ENSMUST00000120344.8
ENSMUST00000130320.8
CDS-3UTR GCA 90 bp CCCTCTTTGAGCAACCTTGTCCTTGGTGCCCACAGAACCAGAAACCGACAGCAGGAGGTCATGACAGACTaGAGACAGGGCCAGGACAGA +
Preference number: 4 (lower is better)
Translates to: PSLSNLVLGAHRTRNRQQEVMTD*RQGQDR
Trigger: TCTGTCCTGGCCCTGTCTGCAGTCTGTCATGACCTC...CTGCTGTCGGTTTCTGGTTCTGTGGGCACCAAGGACAAGGTTGCTCAAAGAGGG
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000117597.2
ENSMUST00000120344.8
ENSMUST00000130320.8
CDS-3UTR CCA 90 bp GCTGACCCCTCTTTGAGCAACCTTGTCCTTGGTGCCCACAGAACCAGAAACCGAGGGGTGGCCTGTCCTTaGGATGAATCAGTCCCTTGT +
Preference number: 4 (lower is better)
Translates to: ADPSLSNLVLGAHRTRNRGVACP*DESVPC
Trigger: ACAAGGGACTGATTCATCCCAAGGACAGGCCACCCC...TCGGTTTCTGGTTCTGTGGGCACCAAGGACAAGGTTGCTCAAAGAGGGGTCAGC
56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000117597.2
ENSMUST00000120344.8
ENSMUST00000130320.8
CDS-3UTR CCA 90 bp CCCTCTTTGAGCAACCTTGTCCTTGGTGCCCACAGAACCAGAAACCGACAGCAGACCACCAATGATTCCTaGAGGAAGCAGCGAGGTGGG +
Preference number: 4 (lower is better)
Translates to: PSLSNLVLGAHRTRNRQQTTNDS*RKQRGG
Trigger: CCCACCTCGCTGCTTCCTCCAGGAATCATTGGTGGT...CTGCTGTCGGTTTCTGGTTCTGTGGGCACCAAGGACAAGGTTGCTCAAAGAGGG
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000117597.2
ENSMUST00000120344.8
ENSMUST00000130320.8
CDS-3UTR CCA 90 bp CTTGTCCTTGGTGCCCACAGAACCAGAAACCGACAGCAGAGATCAGCATCCAAGGGGGATAGCTCTTCCTaGCAAGAGGGAGTGAGGTCC +
Preference number: 4 (lower is better)
Translates to: LVLGAHRTRNRQQRSASKGDSSS*QEGVRS
Trigger: GGACCTCACTCCCTCTTGCCAGGAAGAGCTATCCCC...CTTGGATGCTGATCTCTGCTGTCGGTTTCTGGTTCTGTGGGCACCAAGGACAAG
56% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000117597.2
ENSMUST00000120344.8
ENSMUST00000130320.8
CDS-3UTR CCA 90 bp CTTGTCCTTGGTGCCCACAGAACCAGAAACCGACAGCAGAGATCAGCATCCAAGGGGGTGGCCTGTCCTTaGGATGAATCAGTCCCTTGT +
Preference number: 4 (lower is better)
Translates to: LVLGAHRTRNRQQRSASKGVACP*DESVPC
Trigger: ACAAGGGACTGATTCATCCCAAGGACAGGCCACCCC...CTTGGATGCTGATCTCTGCTGTCGGTTTCTGGTTCTGTGGGCACCAAGGACAAG
54% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000117597.2
ENSMUST00000120344.8
ENSMUST00000130320.8
CDS-3UTR CCA 90 bp CCTTGCGTGAGGACCAGCTCCCAACAGCAGGCCCTTCTCTTCTGCTTTGTTCAGCAGCCCAAACACATCTaGAAGGTTCAGTACTTGCCG +
Preference number: 4 (lower is better)
Translates to: PCVRTSSQQQALLFCFVQQPKHI*KVQYLP
Trigger: CGGCAAGTACTGAACCTTCCAGATGTGTTTGGGCTG...CTGAACAAAGCAGAAGAGAAGGGCCTGCTGTTGGGAGCTGGTCCTCACGCAAGG
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000130320.8
3UTR CAA 72 bp AGACCAGCAGTCACCTATTCCCAAGCTGACCCCTCTTaGAGCAACCTTGTCCTTGGTGCCCACAGAACCAGA +
Preference number: 4 (lower is better)
Translates to: RPAVTYSQADPS*SNLVLGAHRTR
Trigger: TCTGGTTCTGTGGGCACCAAGGACAAGGTTGCTCAAAGAGGGGTCAGCTTGGGAATAGGTGACTGCTGGTCT
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000001837.14
ENSMUST00000117597.2
ENSMUST00000120344.8
ENSMUST00000130320.8
CDS-3UTR TCA 90 bp CCCTCTTTGAGCAACCTTGTCCTTGGTGCCCACAGAACCAGAAACCGACAGCAGACACCAGCTGGTCTTTaGAGAGACGAGAGAGCTTCT +
Preference number: 4 (lower is better)
Translates to: PSLSNLVLGAHRTRNRQQTPAGL*RDERAS
Trigger: AGAAGCTCTCTCGTCTCTTCAAAGACCAGCTGGTGT...CTGCTGTCGGTTTCTGGTTCTGTGGGCACCAAGGACAAGGTTGCTCAAAGAGGG
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000117597.2
ENSMUST00000120344.8
ENSMUST00000130320.8
CDS-3UTR TCA 90 bp CCCCTCTTTGAGCAACCTTGTCCTTGGTGCCCACAGAACCAGAAACCGACAGCAGCATGCCGCATCCTCTaGGCCTCTTTTCTTTGTATG +
Preference number: 4 (lower is better)
Translates to: PLFEQPCPWCPQNQKPTAACRIL*ASFLCM
Trigger: CATACAAAGAAAAGAGGCTCAGAGGATGCGGCATGC...TGCTGTCGGTTTCTGGTTCTGTGGGCACCAAGGACAAGGTTGCTCAAAGAGGGG
53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000117597.2
ENSMUST00000120344.8
ENSMUST00000130320.8
CDS-3UTR TCA 90 bp GCTGACCCCTCTTTGAGCAACCTTGTCCTTGGTGCCCACAGAACCAGAAACCGACATATTCACCACCAATaGTTCCTGGAGGAAGCAGCG +
Preference number: 4 (lower is better)
Translates to: ADPSLSNLVLGAHRTRNRHIHHQ*FLEEAA
Trigger: CGCTGCTTCCTCCAGGAATCATTGGTGGTGAATATG...TCGGTTTCTGGTTCTGTGGGCACCAAGGACAAGGTTGCTCAAAGAGGGGTCAGC
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000117597.2
ENSMUST00000120344.8
ENSMUST00000130320.8
CDS-3UTR TCA 90 bp CGACAGCAGAGATCAGCATCCAAGGAAACAGCATCCAGTTTCCATAAAGTCTCCCCTGGCAAGAGGGAGTaGGGTCCTGGAAGTGGGTCA +
Preference number: 4 (lower is better)
Translates to: RQQRSASKETASSFHKVSPGKRE*GPGSGS
Trigger: TGACCCACTTCCAGGACCTCACTCCCTCTTGCCAGG...GGAGACTTTATGGAAACTGGATGCTGTTTCCTTGGATGCTGATCTCTGCTGTCG
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000117597.2
ENSMUST00000120344.8
ENSMUST00000130320.8
CDS-3UTR TCA 90 bp TTTGAGCAACCTTGTCCTTGGTGCCCACAGAACCAGAAACCGACAGCAGAGATCTACCCCTGCCGGGTCTaGAGGGAAATCTGTTGTTGG +
Preference number: 4 (lower is better)
Translates to: FEQPCPWCPQNQKPTAEIYPCRV*REICCW
Trigger: CCAACAACAGATTTCCCTTCAGACCCGGCAGGGGTA...GATCTCTGCTGTCGGTTTCTGGTTCTGTGGGCACCAAGGACAAGGTTGCTCAAA
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000117597.2
ENSMUST00000120344.8
ENSMUST00000130320.8
CDS-3UTR TCA 90 bp TCTTTGAGCAACCTTGTCCTTGGTGCCCACAGAACCAGAAACCGACAGCAGAGATACCCCTGCCGGGTCTaGAGGGAAATCTGTTGTTGG +
Preference number: 4 (lower is better)
Translates to: SLSNLVLGAHRTRNRQQRYPCRV*REICCW
Trigger: CCAACAACAGATTTCCCTTCAGACCCGGCAGGGGTA...TCTCTGCTGTCGGTTTCTGGTTCTGTGGGCACCAAGGACAAGGTTGCTCAAAGA
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000117597.2
ENSMUST00000120344.8
ENSMUST00000130320.8
CDS-3UTR CCA 90 bp CAAGCTGACCTAATGAAGCCGAGACACAACAAAGACCTATTCAATTTGTACACAGTGGGCAGCAGGACCTaGCTGAGGTGCGCGCGCAGC +
Preference number: 4 (lower is better)
Translates to: QADLMKPRHNKDLFNLYTVGSRT*LRCARS
Trigger: GCTGCGCGCGCACCTCAGCCAGGTCCTGCTGCCCAC...TGTGTACAAATTGAATAGGTCTTTGTTGTGTCTCGGCTTCATTAGGTCAGCTTG
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000130320.8
CDS-3UTR CCA 90 bp TTTGAGCAACCTTGTCCTTGGTGCCCACAGAACCAGAAACCGACAGCAGAGATCGGGGTGGCCTGTCCTTaGGATGAATCAGTCCCTTGT +
Preference number: 4 (lower is better)
Translates to: FEQPCPWCPQNQKPTAEIGVACP*DESVPC
Trigger: ACAAGGGACTGATTCATCCCAAGGACAGGCCACCCC...GATCTCTGCTGTCGGTTTCTGGTTCTGTGGGCACCAAGGACAAGGTTGCTCAAA
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000117597.2
ENSMUST00000120344.8
ENSMUST00000130320.8
CDS-3UTR CCA 90 bp AGCAACCTTGTCCTTGGTGCCCACAGAACCAGAAACCGACAGCAGAGATCAGCAGTGAGGTCCTGGAAGTaGGTCAACAGGGTCAAAACG +
Preference number: 4 (lower is better)
Translates to: SNLVLGAHRTRNRQQRSAVRSWK*VNRVKT
Trigger: CGTTTTGACCCTGTTGACCCACTTCCAGGACCTCAC...TGCTGATCTCTGCTGTCGGTTTCTGGTTCTGTGGGCACCAAGGACAAGGTTGCT
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000117597.2
ENSMUST00000120344.8
ENSMUST00000130320.8
CDS-3UTR TCA 90 bp AGCAACCTTGTCCTTGGTGCCCACAGAACCAGAAACCGACAGCAGAGATCAGCATGGCTGCAGCTGCACTaGCTTCACGTTTTTAATCCC +
Preference number: 4 (lower is better)
Translates to: SNLVLGAHRTRNRQQRSAWLQLH*LHVFNP
Trigger: GGGATTAAAAACGTGAAGTCAGTGCAGCTGCAGCCA...TGCTGATCTCTGCTGTCGGTTTCTGGTTCTGTGGGCACCAAGGACAAGGTTGCT
52% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000117597.2
ENSMUST00000120344.8
ENSMUST00000130320.8
CDS-3UTR TCA 90 bp GTCCTTGGTGCCCACAGAACCAGAAACCGACAGCAGAGATCAGCATCCAAGGAACTGTGTCAGGACCTCTaGCAGTGCCATCTCGAAAAT +
Preference number: 4 (lower is better)
Translates to: VLGAHRTRNRQQRSASKELCQDL*QCHLEN
Trigger: ATTTTCGAGATGGCACTGTCAGAGGTCCTGACACAG...TTCCTTGGATGCTGATCTCTGCTGTCGGTTTCTGGTTCTGTGGGCACCAAGGAC
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000117597.2
ENSMUST00000120344.8
ENSMUST00000130320.8
CDS-3UTR TCA 90 bp CTCTTTGAGCAACCTTGTCCTTGGTGCCCACAGAACCAGAAACCGACAGCAGAGCTGTGTCAGGACCTCTaGCAGTGCCATCTCGAAAAT +
Preference number: 4 (lower is better)
Translates to: LFEQPCPWCPQNQKPTAELCQDL*QCHLEN
Trigger: ATTTTCGAGATGGCACTGTCAGAGGTCCTGACACAG...CTCTGCTGTCGGTTTCTGGTTCTGTGGGCACCAAGGACAAGGTTGCTCAAAGAG
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000117597.2
ENSMUST00000120344.8
ENSMUST00000130320.8
CDS-3UTR TCA 90 bp CATTATCAATACCACAATCTCCATCCCAGAGGTGAACCAGAGGGGAGAGACCAGTACCCCTGCCGGGTCTaGAGGGAAATCTGTTGTTGG +
Preference number: 4 (lower is better)
Translates to: HYQYHNLHPRGEPEGRDQYPCRV*REICCW
Trigger: CCAACAACAGATTTCCCTTCAGACCCGGCAGGGGTA...CTGGTCTCTCCCCTCTGGTTCACCTCTGGGATGGAGATTGTGGTATTGATAATG
52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000117597.2
ENSMUST00000120344.8
ENSMUST00000130320.8
CDS-3UTR GCA 90 bp CATTATCAATACCACAATCTCCATCCCAGAGGTGAACCAGAGGGGAGAGACCAGGAGGTCATGACAGACTaGAGACAGGGCCAGGACAGA +
Preference number: 4 (lower is better)
Translates to: HYQYHNLHPRGEPEGRDQEVMTD*RQGQDR
Trigger: TCTGTCCTGGCCCTGTCTGCAGTCTGTCATGACCTC...CTGGTCTCTCCCCTCTGGTTCACCTCTGGGATGGAGATTGTGGTATTGATAATG
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000117597.2
ENSMUST00000120344.8
ENSMUST00000130320.8
CDS-3UTR CCA 90 bp CCCTCTTTGAGCAACCTTGTCCTTGGTGCCCACAGAACCAGAAACCGACAGCAGGCAGCCAAAGAAGGTTaGTCATTATCCTGGAGTGAG +
Preference number: 4 (lower is better)
Translates to: PSLSNLVLGAHRTRNRQQAAKEG*SLSWSE
Trigger: CTCACTCCAGGATAATGACCAACCTTCTTTGGCTGC...CTGCTGTCGGTTTCTGGTTCTGTGGGCACCAAGGACAAGGTTGCTCAAAGAGGG
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000117597.2
ENSMUST00000120344.8
ENSMUST00000130320.8
CDS-3UTR CCA 90 bp GTCCTTGGTGCCCACAGAACCAGAAACCGACAGCAGAGATCAGCATCCAAGGAAAGAGGGTACACCAGCTaGTCTTTGAAGAGACGAGAG +
Preference number: 4 (lower is better)
Translates to: VLGAHRTRNRQQRSASKERGYTS*SLKRRE
Trigger: CTCTCGTCTCTTCAAAGACCAGCTGGTGTACCCTCT...TTCCTTGGATGCTGATCTCTGCTGTCGGTTTCTGGTTCTGTGGGCACCAAGGAC
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000117597.2
ENSMUST00000120344.8
ENSMUST00000130320.8
CDS-3UTR CCA 90 bp ACCTTGTCCTTGGTGCCCACAGAACCAGAAACCGACAGCAGAGATCAGCATCCAAGAGGGTACACCAGCTaGTCTTTGAAGAGACGAGAG +
Preference number: 4 (lower is better)
Translates to: TLSLVPTEPETDSRDQHPRGYTS*SLKRRE
Trigger: CTCTCGTCTCTTCAAAGACCAGCTGGTGTACCCTCT...TGGATGCTGATCTCTGCTGTCGGTTTCTGGTTCTGTGGGCACCAAGGACAAGGT
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000117597.2
ENSMUST00000120344.8
ENSMUST00000130320.8
CDS-3UTR CCA 90 bp AGCAACCTTGTCCTTGGTGCCCACAGAACCAGAAACCGACAGCAGAGATCAGCACAGCCCAAACACATCTaGAAGGTTCAGTACTTGCCG +
Preference number: 4 (lower is better)
Translates to: SNLVLGAHRTRNRQQRSAQPKHI*KVQYLP
Trigger: CGGCAAGTACTGAACCTTCCAGATGTGTTTGGGCTG...TGCTGATCTCTGCTGTCGGTTTCTGGTTCTGTGGGCACCAAGGACAAGGTTGCT
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000117597.2
ENSMUST00000120344.8
ENSMUST00000130320.8
CDS-3UTR CCA 90 bp CATTATCAATACCACAATCTCCATCCCAGAGGTGAACCAGAGGGGAGAGACCAGACCACCAATGATTCCTaGAGGAAGCAGCGAGGTGGG +
Preference number: 4 (lower is better)
Translates to: HYQYHNLHPRGEPEGRDQTTNDS*RKQRGG
Trigger: CCCACCTCGCTGCTTCCTCCAGGAATCATTGGTGGT...CTGGTCTCTCCCCTCTGGTTCACCTCTGGGATGGAGATTGTGGTATTGATAATG
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000117597.2
ENSMUST00000120344.8
ENSMUST00000130320.8
CDS-3UTR CCA 90 bp TTGAGCAACCTTGTCCTTGGTGCCCACAGAACCAGAAACCGACAGCAGAGATCAGTGAGGTCCTGGAAGTaGGTCAACAGGGTCAAAACG +
Preference number: 4 (lower is better)
Translates to: LSNLVLGAHRTRNRQQRSVRSWK*VNRVKT
Trigger: CGTTTTGACCCTGTTGACCCACTTCCAGGACCTCAC...TGATCTCTGCTGTCGGTTTCTGGTTCTGTGGGCACCAAGGACAAGGTTGCTCAA
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000117597.2
ENSMUST00000120344.8
ENSMUST00000130320.8
CDS-3UTR CCA 90 bp AACATTATCAATACCACAATCTCCATCCCAGAGGTGAACCAGAGGGGAGAGACCGGGGATAGCTCTTCCTaGCAAGAGGGAGTGAGGTCC +
Preference number: 4 (lower is better)
Translates to: NIINTTISIPEVNQRGETGDSSS*QEGVRS
Trigger: GGACCTCACTCCCTCTTGCCAGGAAGAGCTATCCCC...GGTCTCTCCCCTCTGGTTCACCTCTGGGATGGAGATTGTGGTATTGATAATGTT
52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000117597.2
ENSMUST00000120344.8
ENSMUST00000130320.8
CDS-3UTR TCA 90 bp TCTTTGAGCAACCTTGTCCTTGGTGCCCACAGAACCAGAAACCGACAGCAGAGAACACCAGCTGGTCTTTaGAGAGACGAGAGAGCTTCT +
Preference number: 4 (lower is better)
Translates to: SLSNLVLGAHRTRNRQQRTPAGL*RDERAS
Trigger: AGAAGCTCTCTCGTCTCTTCAAAGACCAGCTGGTGT...TCTCTGCTGTCGGTTTCTGGTTCTGTGGGCACCAAGGACAAGGTTGCTCAAAGA
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000117597.2
ENSMUST00000120344.8
ENSMUST00000130320.8
CDS-3UTR TCA 90 bp AGACTGACACCAGCACCATCAGGACCTCCCAGGGCCCATTTGGAAATGACTTATCTGTGTCAGGACCTCTaGCAGTGCCATCTCGAAAAT +
Preference number: 4 (lower is better)
Translates to: RLTPAPSGPPRAHLEMTYLCQDL*QCHLEN
Trigger: ATTTTCGAGATGGCACTGTCAGAGGTCCTGACACAG...ATAAGTCATTTCCAAATGGGCCCTGGGAGGTCCTGATGGTGCTGGTGTCAGTCT
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000130320.8
CDS-3UTR TCA 90 bp TCTTTGAGCAACCTTGTCCTTGGTGCCCACAGAACCAGAAACCGACAGCAGAGAGCATGCCGCATCCTCTaGGCCTCTTTTCTTTGTATG +
Preference number: 4 (lower is better)
Translates to: SLSNLVLGAHRTRNRQQRACRIL*ASFLCM
Trigger: CATACAAAGAAAAGAGGCTCAGAGGATGCGGCATGC...TCTCTGCTGTCGGTTTCTGGTTCTGTGGGCACCAAGGACAAGGTTGCTCAAAGA
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000117597.2
ENSMUST00000120344.8
ENSMUST00000130320.8
CDS-3UTR GCA 90 bp CTTGTCCTTGGTGCCCACAGAACCAGAAACCGACAGCAGAGATCAGCATCCAAGCCAAAAGTCGGAAGATaGGTAGTTTCAGCTCCAGTG +
Preference number: 4 (lower is better)
Translates to: LVLGAHRTRNRQQRSASKPKVGR*VVSAPV
Trigger: CACTGGAGCTGAAACTACGCATCTTCCGACTTTTGG...CTTGGATGCTGATCTCTGCTGTCGGTTTCTGGTTCTGTGGGCACCAAGGACAAG
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000117597.2
ENSMUST00000120344.8
ENSMUST00000130320.8
CDS-3UTR GCA 90 bp GTCCTTGGTGCCCACAGAACCAGAAACCGACAGCAGAGATCAGCATCCAAGGAACCAAAAGTCGGAAGATaGGTAGTTTCAGCTCCAGTG +
Preference number: 4 (lower is better)
Translates to: VLGAHRTRNRQQRSASKEPKVGR*VVSAPV
Trigger: CACTGGAGCTGAAACTACGCATCTTCCGACTTTTGG...TTCCTTGGATGCTGATCTCTGCTGTCGGTTTCTGGTTCTGTGGGCACCAAGGAC
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000117597.2
ENSMUST00000120344.8
ENSMUST00000130320.8
CDS-3UTR GCA 90 bp AACATTATCAATACCACAATCTCCATCCCAGAGGTGAACCAGAGGGGAGAGACCGAGGTCATGACAGACTaGAGACAGGGCCAGGACAGA +
Preference number: 4 (lower is better)
Translates to: NIINTTISIPEVNQRGETEVMTD*RQGQDR
Trigger: TCTGTCCTGGCCCTGTCTGCAGTCTGTCATGACCTC...GGTCTCTCCCCTCTGGTTCACCTCTGGGATGGAGATTGTGGTATTGATAATGTT
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000117597.2
ENSMUST00000120344.8
ENSMUST00000130320.8
CDS-3UTR CCA 90 bp CCCTCTTTGAGCAACCTTGTCCTTGGTGCCCACAGAACCAGAAACCGACAGCAGGGTTGGTCATTATCCTaGAGTGAGGAATGCTCTGTA +
Preference number: 4 (lower is better)
Translates to: PSLSNLVLGAHRTRNRQQGWSLS*SEECSV
Trigger: TACAGAGCATTCCTCACTCCAGGATAATGACCAACC...CTGCTGTCGGTTTCTGGTTCTGTGGGCACCAAGGACAAGGTTGCTCAAAGAGGG
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000117597.2
ENSMUST00000120344.8
ENSMUST00000130320.8
CDS-3UTR CCA 90 bp AGCAACCTTGTCCTTGGTGCCCACAGAACCAGAAACCGACAGCAGAGATCAGCAGCAGCCAAAGAAGGTTaGTCATTATCCTGGAGTGAG +
Preference number: 4 (lower is better)
Translates to: SNLVLGAHRTRNRQQRSAAAKEG*SLSWSE
Trigger: CTCACTCCAGGATAATGACCAACCTTCTTTGGCTGC...TGCTGATCTCTGCTGTCGGTTTCTGGTTCTGTGGGCACCAAGGACAAGGTTGCT
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000117597.2
ENSMUST00000120344.8
ENSMUST00000130320.8
CDS-3UTR CCA 90 bp CACACCATTTCTCTTTCCCCAATGCTTCTGGGCTGCTGCGTCCACTCTAGCATGGCAGCCAAAGAAGGTTaGTCATTATCCTGGAGTGAG +
Preference number: 4 (lower is better)
Translates to: HTISLSPMLLGCCVHSSMAAKEG*SLSWSE
Trigger: CTCACTCCAGGATAATGACCAACCTTCTTTGGCTGC...CATGCTAGAGTGGACGCAGCAGCCCAGAAGCATTGGGGAAAGAGAAATGGTGTG
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000130320.8
CDS-3UTR CCA 90 bp TCTTTGAGCAACCTTGTCCTTGGTGCCCACAGAACCAGAAACCGACAGCAGAGAGATGTTAGTCTGACTTaGGGTGGCAGCCAAAGAAGG +
Preference number: 4 (lower is better)
Translates to: SLSNLVLGAHRTRNRQQRDVSLT*GGSQRR
Trigger: CCTTCTTTGGCTGCCACCCCAAGTCAGACTAACATC...TCTCTGCTGTCGGTTTCTGGTTCTGTGGGCACCAAGGACAAGGTTGCTCAAAGA
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000117597.2
ENSMUST00000120344.8
ENSMUST00000130320.8
CDS-3UTR CCA 90 bp TTGAGCAACCTTGTCCTTGGTGCCCACAGAACCAGAAACCGACAGCAGAGATCAGATGTTAGTCTGACTTaGGGTGGCAGCCAAAGAAGG +
Preference number: 4 (lower is better)
Translates to: LSNLVLGAHRTRNRQQRSDVSLT*GGSQRR
Trigger: CCTTCTTTGGCTGCCACCCCAAGTCAGACTAACATC...TGATCTCTGCTGTCGGTTTCTGGTTCTGTGGGCACCAAGGACAAGGTTGCTCAA
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000117597.2
ENSMUST00000120344.8
ENSMUST00000130320.8
CDS-3UTR CCA 90 bp TCTTTGAGCAACCTTGTCCTTGGTGCCCACAGAACCAGAAACCGACAGCAGAGAAGGCATCAAATGGGGTaGCCTGTCCTTGGGATGAAT +
Preference number: 4 (lower is better)
Translates to: SLSNLVLGAHRTRNRQQRRHQMG*PVLGMN
Trigger: ATTCATCCCAAGGACAGGCCACCCCATTTGATGCCT...TCTCTGCTGTCGGTTTCTGGTTCTGTGGGCACCAAGGACAAGGTTGCTCAAAGA
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000117597.2
ENSMUST00000120344.8
ENSMUST00000130320.8
CDS-3UTR CCA 90 bp TTGAGCAACCTTGTCCTTGGTGCCCACAGAACCAGAAACCGACAGCAGAGATCAAGGCATCAAATGGGGTaGCCTGTCCTTGGGATGAAT +
Preference number: 4 (lower is better)
Translates to: LSNLVLGAHRTRNRQQRSRHQMG*PVLGMN
Trigger: ATTCATCCCAAGGACAGGCCACCCCATTTGATGCCT...TGATCTCTGCTGTCGGTTTCTGGTTCTGTGGGCACCAAGGACAAGGTTGCTCAA
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000117597.2
ENSMUST00000120344.8
ENSMUST00000130320.8
CDS-3UTR CCA 90 bp AAGGCACAGAATACCCACACCATTTCTCTTTCCCCAATGCTTCTGGGCTGCTGCAGAGGGTACACCAGCTaGTCTTTGAAGAGACGAGAG +
Preference number: 4 (lower is better)
Translates to: KAQNTHTISLSPMLLGCCRGYTS*SLKRRE
Trigger: CTCTCGTCTCTTCAAAGACCAGCTGGTGTACCCTCT...GCAGCAGCCCAGAAGCATTGGGGAAAGAGAAATGGTGTGGGTATTCTGTGCCTT
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000130320.8
3UTR CAA 72 bp TTCCTCACAGAACCCAGAAAGCTGCTAAGGAAAGGGTaGGGCTCACTGAGTTCGAGCGCACTAGTTCCACTT +
Preference number: 4 (lower is better)
Translates to: FLTEPRKLLRKG*GSLSSSALVPL
Trigger: AAGTGGAACTAGTGCGCTCGAACTCAGTGAGCCCAACCCTTTCCTTAGCAGCTTTCTGGGTTCTGTGAGGAA
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000130320.8
CDS-3UTR TCA 90 bp CCCTCTTTGAGCAACCTTGTCCTTGGTGCCCACAGAACCAGAAACCGACAGCAGCATGGCATCCTGAATTaGCTCAGCTTCAACATTTTG +
Preference number: 4 (lower is better)
Translates to: PSLSNLVLGAHRTRNRQQHGILN*LSFNIL
Trigger: CAAAATGTTGAAGCTGAGTCAATTCAGGATGCCATG...CTGCTGTCGGTTTCTGGTTCTGTGGGCACCAAGGACAAGGTTGCTCAAAGAGGG
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000001837.14
ENSMUST00000117597.2
ENSMUST00000120344.8
ENSMUST00000130320.8
CDS-3UTR TCA 90 bp AGAAACCGACAGCAGAGATCAGCATCCAAGGAAACAGCATCCAGTTTCCATAAAGCAATGAGGAGGTCATaGCAGACTGCAGACAGGGCC +
Preference number: 4 (lower is better)
Translates to: RNRQQRSASKETASSFHKAMRRS*QTADRA
Trigger: GGCCCTGTCTGCAGTCTGTCATGACCTCCTCATTGC...TTTATGGAAACTGGATGCTGTTTCCTTGGATGCTGATCTCTGCTGTCGGTTTCT
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000117597.2
ENSMUST00000120344.8
ENSMUST00000130320.8
CDS-3UTR TCA 90 bp TGTATCTCTAGGCTTCTTATCCCAGAGCCAAGTCAGCTGATAGAATTAACCTGGGCAATGAGGAGGTCATaGCAGACTGCAGACAGGGCC +
Preference number: 4 (lower is better)
Translates to: CISRLLIPEPSQLIELTWAMRRS*QTADRA
Trigger: GGCCCTGTCTGCAGTCTGTCATGACCTCCTCATTGC...CCAGGTTAATTCTATCAGCTGACTTGGCTCTGGGATAAGAAGCCTAGAGATACA
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000130320.8
CDS-3UTR TCA 90 bp TCTTTGAGCAACCTTGTCCTTGGTGCCCACAGAACCAGAAACCGACAGCAGAGATCTCTTCATCTCCAGTaGGGGCATCCTTGTTGTTCA +
Preference number: 4 (lower is better)
Translates to: SLSNLVLGAHRTRNRQQRSLHLQ*GHPCCS
Trigger: TGAACAACAAGGATGCCCTCACTGGAGATGAAGAGA...TCTCTGCTGTCGGTTTCTGGTTCTGTGGGCACCAAGGACAAGGTTGCTCAAAGA
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000130320.8
CDS-3UTR TCA 90 bp GCTGACCCCTCTTTGAGCAACCTTGTCCTTGGTGCCCACAGAACCAGAAACCGAAGAAACAATCCCATATaGAGCCAAGGTCTCTTCATC +
Preference number: 4 (lower is better)
Translates to: ADPSLSNLVLGAHRTRNRRNNPI*SQGLFI
Trigger: GATGAAGAGACCTTGGCTTCATATGGGATTGTTTCT...TCGGTTTCTGGTTCTGTGGGCACCAAGGACAAGGTTGCTCAAAGAGGGGTCAGC
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000130320.8
CDS-3UTR GCA 90 bp GCTGACCCCTCTTTGAGCAACCTTGTCCTTGGTGCCCACAGAACCAGAAACCGAAGAGAATGTGGTACCTaGCCATCCTCTGTTTCATTA +
Preference number: 4 (lower is better)
Translates to: ADPSLSNLVLGAHRTRNRRECGT*PSSVSL
Trigger: TAATGAAACAGAGGATGGGCAGGTACCACATTCTCT...TCGGTTTCTGGTTCTGTGGGCACCAAGGACAAGGTTGCTCAAAGAGGGGTCAGC
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000117597.2
ENSMUST00000120344.8
ENSMUST00000130320.8
CDS-3UTR GCA 90 bp CCCCTCTTTGAGCAACCTTGTCCTTGGTGCCCACAGAACCAGAAACCGACAGCAAGAGAATGTGGTACCTaGCCATCCTCTGTTTCATTA +
Preference number: 4 (lower is better)
Translates to: PLFEQPCPWCPQNQKPTARECGT*PSSVSL
Trigger: TAATGAAACAGAGGATGGGCAGGTACCACATTCTCT...TGCTGTCGGTTTCTGGTTCTGTGGGCACCAAGGACAAGGTTGCTCAAAGAGGGG
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000117597.2
ENSMUST00000120344.8
ENSMUST00000130320.8
CDS-3UTR GCA 90 bp TTGAGCAACCTTGTCCTTGGTGCCCACAGAACCAGAAACCGACAGCAGAGATCACTCAGGCATTGTCACTaGTTTGGTTTCAGTTCCCTG +
Preference number: 4 (lower is better)
Translates to: LSNLVLGAHRTRNRQQRSLRHCH*FGFSSL
Trigger: CAGGGAACTGAAACCAAAGCAGTGACAATGCCTGAG...TGATCTCTGCTGTCGGTTTCTGGTTCTGTGGGCACCAAGGACAAGGTTGCTCAA
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000117597.2
ENSMUST00000120344.8
ENSMUST00000130320.8
CDS-3UTR CCA 90 bp CTCTTTGAGCAACCTTGTCCTTGGTGCCCACAGAACCAGAAACCGACAGCAGAGGAGCATTGGTTCCAATaGATGGAAACCAGAAACCTC +
Preference number: 4 (lower is better)
Translates to: LFEQPCPWCPQNQKPTAEEHWFQ*METRNL
Trigger: GAGGTTTCTGGTTTCCATCCATTGGAACCAATGCTC...CTCTGCTGTCGGTTTCTGGTTCTGTGGGCACCAAGGACAAGGTTGCTCAAAGAG
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000117597.2
ENSMUST00000120344.8
ENSMUST00000130320.8
CDS-3UTR CCA 90 bp GTCCTTGGTGCCCACAGAACCAGAAACCGACAGCAGAGATCAGCATCCAAGGAAGAGCATTGGTTCCAATaGATGGAAACCAGAAACCTC +
Preference number: 4 (lower is better)
Translates to: VLGAHRTRNRQQRSASKEEHWFQ*METRNL
Trigger: GAGGTTTCTGGTTTCCATCCATTGGAACCAATGCTC...TTCCTTGGATGCTGATCTCTGCTGTCGGTTTCTGGTTCTGTGGGCACCAAGGAC
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000117597.2
ENSMUST00000120344.8
ENSMUST00000130320.8
CDS-3UTR CCA 90 bp CTTGTCCTTGGTGCCCACAGAACCAGAAACCGACAGCAGAGATCAGCATCCAAGGCATTGTCACTGCTTTaGTTTCAGTTCCCTGAGGAA +
Preference number: 4 (lower is better)
Translates to: LVLGAHRTRNRQQRSASKALSLL*FQFPEE
Trigger: TTCCTCAGGGAACTGAAACCAAAGCAGTGACAATGC...CTTGGATGCTGATCTCTGCTGTCGGTTTCTGGTTCTGTGGGCACCAAGGACAAG
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000117597.2
ENSMUST00000120344.8
ENSMUST00000130320.8
CDS-3UTR CCA 90 bp CACACCATTTCTCTTTCCCCAATGCTTCTGGGCTGCTGCGTCCACTCTAGCATGGCATTGTCACTGCTTTaGTTTCAGTTCCCTGAGGAA +
Preference number: 4 (lower is better)
Translates to: HTISLSPMLLGCCVHSSMALSLL*FQFPEE
Trigger: TTCCTCAGGGAACTGAAACCAAAGCAGTGACAATGC...CATGCTAGAGTGGACGCAGCAGCCCAGAAGCATTGGGGAAAGAGAAATGGTGTG
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000130320.8
CDS-3UTR CCA 90 bp ACCCAGAGGTGGTCATCAAGTCTTGAGAAGTTAAACACTTTTCATACCCAACACTGGGAAGGTAGGCCCTaGGGTAGACGGGAATGGGAC +
Preference number: 4 (lower is better)
Translates to: TQRWSSSLEKLNTFHTQHWEGRP*GRREWD
Trigger: GTCCCATTCCCGTCTACCCCAGGGCCTACCTTCCCA...GTGTTGGGTATGAAAAGTGTTTAACTTCTCAAGACTTGATGACCACCTCTGGGT
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000130320.8
3UTR CAA 72 bp AATGTGTCTGTACCAACCCAGTGGTCTTCGGAACCCTaGAAGTTCCTCACAGAACCCAGAAAGCTGCTAAGG +
Preference number: 4 (lower is better)
Translates to: NVSVPTQWSSEP*KFLTEPRKLLR
Trigger: CCTTAGCAGCTTTCTGGGTTCTGTGAGGAACTTCAAGGGTTCCGAAGACCACTGGGTTGGTACAGACACATT
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000130320.8
CDS-3UTR TCA 90 bp AACATTATCAATACCACAATCTCCATCCCAGAGGTGAACCAGAGGGGAGAGACCACACCAGCTGGTCTTTaGAGAGACGAGAGAGCTTCT +
Preference number: 4 (lower is better)
Translates to: NIINTTISIPEVNQRGETTPAGL*RDERAS
Trigger: AGAAGCTCTCTCGTCTCTTCAAAGACCAGCTGGTGT...GGTCTCTCCCCTCTGGTTCACCTCTGGGATGGAGATTGTGGTATTGATAATGTT
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000117597.2
ENSMUST00000120344.8
ENSMUST00000130320.8
CDS-3UTR TCA 90 bp CGACAGCAGAGATCAGCATCCAAGGAAACAGCATCCAGTTTCCATAAAGTCTCCCATATTCACCACCAATaGTTCCTGGAGGAAGCAGCG +
Preference number: 4 (lower is better)
Translates to: RQQRSASKETASSFHKVSHIHHQ*FLEEAA
Trigger: CGCTGCTTCCTCCAGGAATCATTGGTGGTGAATATG...GGAGACTTTATGGAAACTGGATGCTGTTTCCTTGGATGCTGATCTCTGCTGTCG
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000117597.2
ENSMUST00000120344.8
ENSMUST00000130320.8
CDS-3UTR CCA 90 bp TTTGAGCAACCTTGTCCTTGGTGCCCACAGAACCAGAAACCGACAGCAGAGATCAGTCCCTTGTTCATCTaGGATGTTAGTCTGACTTGG +
Preference number: 4 (lower is better)
Translates to: FEQPCPWCPQNQKPTAEISPLFI*DVSLTW
Trigger: CCAAGTCAGACTAACATCCCAGATGAACAAGGGACT...GATCTCTGCTGTCGGTTTCTGGTTCTGTGGGCACCAAGGACAAGGTTGCTCAAA
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000117597.2
ENSMUST00000120344.8
ENSMUST00000130320.8
CDS-3UTR CCA 90 bp TTGAGCAACCTTGTCCTTGGTGCCCACAGAACCAGAAACCGACAGCAGAGATCAGAGCATTGGTTCCAATaGATGGAAACCAGAAACCTC +
Preference number: 4 (lower is better)
Translates to: LSNLVLGAHRTRNRQQRSEHWFQ*METRNL
Trigger: GAGGTTTCTGGTTTCCATCCATTGGAACCAATGCTC...TGATCTCTGCTGTCGGTTTCTGGTTCTGTGGGCACCAAGGACAAGGTTGCTCAA
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000117597.2
ENSMUST00000120344.8
ENSMUST00000130320.8
CDS-3UTR CCA 90 bp TCTTTGAGCAACCTTGTCCTTGGTGCCCACAGAACCAGAAACCGACAGCAGAGAGCATTGTCACTGCTTTaGTTTCAGTTCCCTGAGGAA +
Preference number: 4 (lower is better)
Translates to: SLSNLVLGAHRTRNRQQRALSLL*FQFPEE
Trigger: TTCCTCAGGGAACTGAAACCAAAGCAGTGACAATGC...TCTCTGCTGTCGGTTTCTGGTTCTGTGGGCACCAAGGACAAGGTTGCTCAAAGA
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000117597.2
ENSMUST00000120344.8
ENSMUST00000130320.8
CDS-3UTR CCA 90 bp CGACAGCAGAGATCAGCATCCAAGGAAACAGCATCCAGTTTCCATAAAGTCTCCCAGCCCAAACACATCTaGAAGGTTCAGTACTTGCCG +
Preference number: 4 (lower is better)
Translates to: RQQRSASKETASSFHKVSQPKHI*KVQYLP
Trigger: CGGCAAGTACTGAACCTTCCAGATGTGTTTGGGCTG...GGAGACTTTATGGAAACTGGATGCTGTTTCCTTGGATGCTGATCTCTGCTGTCG
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000117597.2
ENSMUST00000120344.8
ENSMUST00000130320.8
CDS-3UTR CCA 90 bp TTTGAGCAACCTTGTCCTTGGTGCCCACAGAACCAGAAACCGACAGCAGAGATCCAAAATGGGATAGGGTaGGCTGATGGTAGGAACATT +
Preference number: 4 (lower is better)
Translates to: FEQPCPWCPQNQKPTAEIQNGIG*ADGRNI
Trigger: AATGTTCCTACCATCAGCCCACCCTATCCCATTTTG...GATCTCTGCTGTCGGTTTCTGGTTCTGTGGGCACCAAGGACAAGGTTGCTCAAA
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000117597.2
ENSMUST00000120344.8
ENSMUST00000130320.8
3UTR CAA 72 bp AAGAGACGAGAGAGCTTCTTAAGATCTTTGTACACTTaGGCTGCGCTTTCCCCTGGTTCTACTCCAGCAGCA +
Preference number: 4 (lower is better)
Translates to: KRRESFLRSLYT*AALSPGSTPAA
Trigger: TGCTGCTGGAGTAGAACCAGGGGAAAGCGCAGCCAAAGTGTACAAAGATCTTAAGAAGCTCTCTCGTCTCTT
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000001837.14
CDS-3UTR TCA 90 bp TCTTTGAGCAACCTTGTCCTTGGTGCCCACAGAACCAGAAACCGACAGCAGAGACATGGCATCCTGAATTaGCTCAGCTTCAACATTTTG +
Preference number: 4 (lower is better)
Translates to: SLSNLVLGAHRTRNRQQRHGILN*LSFNIL
Trigger: CAAAATGTTGAAGCTGAGTCAATTCAGGATGCCATG...TCTCTGCTGTCGGTTTCTGGTTCTGTGGGCACCAAGGACAAGGTTGCTCAAAGA
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000001837.14
ENSMUST00000117597.2
ENSMUST00000120344.8
ENSMUST00000130320.8
CDS-3UTR GCA 90 bp TTTGAGCAACCTTGTCCTTGGTGCCCACAGAACCAGAAACCGACAGCAGAGATCTCCTGGAGTGAGGAATaGTCTGTATCTGTAGATGAA +
Preference number: 4 (lower is better)
Translates to: FEQPCPWCPQNQKPTAEISWSEE*SVSVDE
Trigger: TTCATCTACAGATACAGAGCATTCCTCACTCCAGGA...GATCTCTGCTGTCGGTTTCTGGTTCTGTGGGCACCAAGGACAAGGTTGCTCAAA
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000117597.2
ENSMUST00000130320.8
CDS-3UTR GCA 90 bp TTGAGCAACCTTGTCCTTGGTGCCCACAGAACCAGAAACCGACAGCAGAGATCATCCTGGAGTGAGGAATaGTCTGTATCTGTAGATGAA +
Preference number: 4 (lower is better)
Translates to: LSNLVLGAHRTRNRQQRSSWSEE*SVSVDE
Trigger: TTCATCTACAGATACAGAGCATTCCTCACTCCAGGA...TGATCTCTGCTGTCGGTTTCTGGTTCTGTGGGCACCAAGGACAAGGTTGCTCAA
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000117597.2
ENSMUST00000130320.8
CDS-3UTR GCA 90 bp CTCTTTGAGCAACCTTGTCCTTGGTGCCCACAGAACCAGAAACCGACAGCAGAGAGAGGATGTGTGTACTaGAGTTTGTATACACCACTT +
Preference number: 4 (lower is better)
Translates to: LFEQPCPWCPQNQKPTAERGCVY*SLYTPL
Trigger: AAGTGGTGTATACAAACTGCAGTACACACATCCTCT...CTCTGCTGTCGGTTTCTGGTTCTGTGGGCACCAAGGACAAGGTTGCTCAAAGAG
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000117597.2
ENSMUST00000120344.8
ENSMUST00000130320.8
CDS-3UTR GCA 90 bp CTTGTCCTTGGTGCCCACAGAACCAGAAACCGACAGCAGAGATCAGCATCCAAGAGAGGATGTGTGTACTaGAGTTTGTATACACCACTT +
Preference number: 4 (lower is better)
Translates to: LVLGAHRTRNRQQRSASKRGCVY*SLYTPL
Trigger: AAGTGGTGTATACAAACTGCAGTACACACATCCTCT...CTTGGATGCTGATCTCTGCTGTCGGTTTCTGGTTCTGTGGGCACCAAGGACAAG
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000117597.2
ENSMUST00000120344.8
ENSMUST00000130320.8
CDS-3UTR CCA 90 bp GGTCGGTGTTTGCAGTACAAGCACAAGGACCTGCATTTGATTCTCAGGAGCCATAGTCCCTTGTTCATCTaGGATGTTAGTCTGACTTGG +
Preference number: 4 (lower is better)
Translates to: GRCLQYKHKDLHLILRSHSPLFI*DVSLTW
Trigger: CCAAGTCAGACTAACATCCCAGATGAACAAGGGACT...ATGGCTCCTGAGAATCAAATGCAGGTCCTTGTGCTTGTACTGCAAACACCGACC
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000130320.8
CDS-3UTR CCA 90 bp TGTATCTCTAGGCTTCTTATCCCAGAGCCAAGTCAGCTGATAGAATTAACCTGGGTGAGGTCCTGGAAGTaGGTCAACAGGGTCAAAACG +
Preference number: 4 (lower is better)
Translates to: CISRLLIPEPSQLIELTWVRSWK*VNRVKT
Trigger: CGTTTTGACCCTGTTGACCCACTTCCAGGACCTCAC...CCAGGTTAATTCTATCAGCTGACTTGGCTCTGGGATAAGAAGCCTAGAGATACA
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000130320.8
CDS-3UTR TCA 90 bp CATTATCAATACCACAATCTCCATCCCAGAGGTGAACCAGAGGGGAGAGACCAGCATGGCATCCTGAATTaGCTCAGCTTCAACATTTTG +
Preference number: 4 (lower is better)
Translates to: HYQYHNLHPRGEPEGRDQHGILN*LSFNIL
Trigger: CAAAATGTTGAAGCTGAGTCAATTCAGGATGCCATG...CTGGTCTCTCCCCTCTGGTTCACCTCTGGGATGGAGATTGTGGTATTGATAATG
47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000001837.14
ENSMUST00000117597.2
ENSMUST00000120344.8
ENSMUST00000130320.8
CDS-3UTR CCA 90 bp AGAAACCGACAGCAGAGATCAGCATCCAAGGAAACAGCATCCAGTTTCCATAAAGATGTTAGTCTGACTTaGGGTGGCAGCCAAAGAAGG +
Preference number: 4 (lower is better)
Translates to: RNRQQRSASKETASSFHKDVSLT*GGSQRR
Trigger: CCTTCTTTGGCTGCCACCCCAAGTCAGACTAACATC...TTTATGGAAACTGGATGCTGTTTCCTTGGATGCTGATCTCTGCTGTCGGTTTCT
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000117597.2
ENSMUST00000120344.8
ENSMUST00000130320.8
CDS-3UTR CCA 90 bp AGAAACCGACAGCAGAGATCAGCATCCAAGGAAACAGCATCCAGTTTCCATAAAAGGCATCAAATGGGGTaGCCTGTCCTTGGGATGAAT +
Preference number: 4 (lower is better)
Translates to: RNRQQRSASKETASSFHKRHQMG*PVLGMN
Trigger: ATTCATCCCAAGGACAGGCCACCCCATTTGATGCCT...TTTATGGAAACTGGATGCTGTTTCCTTGGATGCTGATCTCTGCTGTCGGTTTCT
47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000117597.2
ENSMUST00000120344.8
ENSMUST00000130320.8
CDS-3UTR CCA 90 bp CGACAGCAGAGATCAGCATCCAAGGAAACAGCATCCAGTTTCCATAAAGTCTCCCAAAATGGGATAGGGTaGGCTGATGGTAGGAACATT +
Preference number: 4 (lower is better)
Translates to: RQQRSASKETASSFHKVSQNGIG*ADGRNI
Trigger: AATGTTCCTACCATCAGCCCACCCTATCCCATTTTG...GGAGACTTTATGGAAACTGGATGCTGTTTCCTTGGATGCTGATCTCTGCTGTCG
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000117597.2
ENSMUST00000120344.8
ENSMUST00000130320.8
CDS-3UTR CCA 90 bp GGTCTATTCCTCAAGTATCAGGTGTGGCAGTTCTTCAGTATAACTTTAAAGGAAGGGGATAGCTCTTCCTaGCAAGAGGGAGTGAGGTCC +
Preference number: 4 (lower is better)
Translates to: GLFLKYQVWQFFSITLKEGDSSS*QEGVRS
Trigger: GGACCTCACTCCCTCTTGCCAGGAAGAGCTATCCCC...TTCCTTTAAAGTTATACTGAAGAACTGCCACACCTGATACTTGAGGAATAGACC
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000130320.8
3UTR CAA 72 bp GTGGTACCTGCCCATCCTCTGTTTCATTACAGAGCATaGGTTCCAATGGATGGAAACCAGAAACCTCTTCCA +
Preference number: 4 (lower is better)
Translates to: VVPAHPLFHYRA*VPMDGNQKPLP
Trigger: TGGAAGAGGTTTCTGGTTTCCATCCATTGGAACCAATGCTCTGTAATGAAACAGAGGATGGGCAGGTACCAC
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000001837.14
3UTR CAA 72 bp CGTGTGAAAGCCAGAAGAGGGTACACCAGCTGGTCTTaGAAGAGACGAGAGAGCTTCTTAAGATCTTTGTAC +
Preference number: 4 (lower is better)
Translates to: RVKARRGYTSWS*KRRESFLRSLY
Trigger: GTACAAAGATCTTAAGAAGCTCTCTCGTCTCTTCAAAGACCAGCTGGTGTACCCTCTTCTGGCTTTCACACG
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000001837.14
CDS-3UTR GCA 90 bp AGAAACCGACAGCAGAGATCAGCATCCAAGGAAACAGCATCCAGTTTCCATAAACCAAAAGTCGGAAGATaGGTAGTTTCAGCTCCAGTG +
Preference number: 4 (lower is better)
Translates to: RNRQQRSASKETASSFHKPKVGR*VVSAPV
Trigger: CACTGGAGCTGAAACTACGCATCTTCCGACTTTTGG...TTTATGGAAACTGGATGCTGTTTCCTTGGATGCTGATCTCTGCTGTCGGTTTCT
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000117597.2
ENSMUST00000120344.8
ENSMUST00000130320.8
CDS-3UTR GCA 90 bp CCATCCTCTGTTTCATTACAGAGCATTGGTTCCAATGGATGGAAACCAGAAACCTCCTGGAGTGAGGAATaGTCTGTATCTGAACCCCAA +
Preference number: 4 (lower is better)
Translates to: PSSVSLQSIGSNGWKPETSWSEE*SVSEPQ
Trigger: TTGGGGTTCAGATACAGAGCATTCCTCACTCCAGGA...GGTTTCTGGTTTCCATCCATTGGAACCAATGCTCTGTAATGAAACAGAGGATGG
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000147168.2
CDS-3UTR CCA 90 bp CAAAACATTATCAATACCACAATCTCCATCCCAGAGGTGAACCAGAGGGGAGAGGGTTGGTCATTATCCTaGAGTGAGGAATGCTCTGTA +
Preference number: 4 (lower is better)
Translates to: QNIINTTISIPEVNQRGEGWSLS*SEECSV
Trigger: TACAGAGCATTCCTCACTCCAGGATAATGACCAACC...CTCTCCCCTCTGGTTCACCTCTGGGATGGAGATTGTGGTATTGATAATGTTTTG
46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000117597.2
ENSMUST00000120344.8
ENSMUST00000130320.8
CDS-3UTR TCA 90 bp CAAGCTGACCTAATGAAGCCGAGACACAACAAAGACCTATTCAATTTGTACACAGCATGCCGCATCCTCTaGGCCTCTTTTCTTTGTATG +
Preference number: 4 (lower is better)
Translates to: QADLMKPRHNKDLFNLYTACRIL*ASFLCM
Trigger: CATACAAAGAAAAGAGGCTCAGAGGATGCGGCATGC...TGTGTACAAATTGAATAGGTCTTTGTTGTGTCTCGGCTTCATTAGGTCAGCTTG
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000130320.8
CDS-3UTR CCA 90 bp AGAAACCGACAGCAGAGATCAGCATCCAAGGAAACAGCATCCAGTTTCCATAAAAGTCCCTTGTTCATCTaGGATGTTAGTCTGACTTGG +
Preference number: 4 (lower is better)
Translates to: RNRQQRSASKETASSFHKSPLFI*DVSLTW
Trigger: CCAAGTCAGACTAACATCCCAGATGAACAAGGGACT...TTTATGGAAACTGGATGCTGTTTCCTTGGATGCTGATCTCTGCTGTCGGTTTCT
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000117597.2
ENSMUST00000120344.8
ENSMUST00000130320.8
CDS-3UTR CCA 90 bp AGAAACCGACAGCAGAGATCAGCATCCAAGGAAACAGCATCCAGTTTCCATAAACAAAATGGGATAGGGTaGGCTGATGGTAGGAACATT +
Preference number: 4 (lower is better)
Translates to: RNRQQRSASKETASSFHKQNGIG*ADGRNI
Trigger: AATGTTCCTACCATCAGCCCACCCTATCCCATTTTG...TTTATGGAAACTGGATGCTGTTTCCTTGGATGCTGATCTCTGCTGTCGGTTTCT
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000117597.2
ENSMUST00000120344.8
ENSMUST00000130320.8
3UTR CAA 72 bp AACCTCTTTTGTGTTCCCACAAAGCATGAGCCCAGATaGATAAACATGCACACCCAGGCTTCATATGCAGAT +
Preference number: 4 (lower is better)
Translates to: NLFCVPTKHEPR*INMHTQASYAD
Trigger: ATCTGCATATGAAGCCTGGGTGTGCATGTTTATCAATCTGGGCTCATGCTTTGTGGGAACACAAAAGAGGTT
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000130320.8
CDS-3UTR TCA 90 bp AGAAACCGACAGCAGAGATCAGCATCCAAGGAAACAGCATCCAGTTTCCATAAACATGGCATCCTGAATTaGCTCAGCTTCAACATTTTG +
Preference number: 4 (lower is better)
Translates to: RNRQQRSASKETASSFHKHGILN*LSFNIL
Trigger: CAAAATGTTGAAGCTGAGTCAATTCAGGATGCCATG...TTTATGGAAACTGGATGCTGTTTCCTTGGATGCTGATCTCTGCTGTCGGTTTCT
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000001837.14
ENSMUST00000117597.2
ENSMUST00000120344.8
ENSMUST00000130320.8
CDS-3UTR GCA 90 bp GGTCGGTGTTTGCAGTACAAGCACAAGGACCTGCATTTGATTCTCAGGAGCCATGTTGTTCAATGTAATTaGAAATCGGGTATCAGAACT +
Preference number: 4 (lower is better)
Translates to: GRCLQYKHKDLHLILRSHVVQCN*KSGIRT
Trigger: AGTTCTGATACCCGATTTGCAATTACATTGAACAAC...ATGGCTCCTGAGAATCAAATGCAGGTCCTTGTGCTTGTACTGCAAACACCGACC
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000130320.8
3UTR CAA 72 bp GAACATTGCATGCCGCATCCTCTGAGCCTCTTTTCTTaGTATGTGCTTCTTTCTATACAATTCTTTCCAGTC +
Preference number: 4 (lower is better)
Translates to: EHCMPHPLSLFS*YVLLSIQFFPV
Trigger: GACTGGAAAGAATTGTATAGAAAGAAGCACATACAAAGAAAAGAGGCTCAGAGGATGCGGCATGCAATGTTC
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000001837.14
3UTR CAA 72 bp TACAGAATTCAGGATTTTTACACAGGGAGCCACAAGTaGGAAAGGGCTCTTCCCAAGACTGAATTATTACCA +
Preference number: 4 (lower is better)
Translates to: YRIQDFYTGSHK*ERALPKTELLP
Trigger: TGGTAATAATTCAGTCTTGGGAAGAGCCCTTTCCAACTTGTGGCTCCCTGTGTAAAAATCCTGAATTCTGTA
42% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000130320.8
CDS-3UTR GCA 90 bp GGTCTATTCCTCAAGTATCAGGTGTGGCAGTTCTTCAGTATAACTTTAAAGGAAAGAGGATGTGTGTACTaGAGTTTGTATACACCACTT +
Preference number: 4 (lower is better)
Translates to: GLFLKYQVWQFFSITLKERGCVY*SLYTPL
Trigger: AAGTGGTGTATACAAACTGCAGTACACACATCCTCT...TTCCTTTAAAGTTATACTGAAGAACTGCCACACCTGATACTTGAGGAATAGACC
39% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000130320.8
CDS-3UTR CAA 90 bp CCTTGCGTGAGGACCAGCTCCCAACAGCAGGCCCTTCTCTTCTGCTTTGTTCAGAAGGCATCACTGATGTaGGAGCAGCCAGCTGACTGG +
Preference number: 5 (lower is better)
Translates to: PCVRTSSQQQALLFCFVQKASLM*EQPADW
Trigger: CCAGTCAGCTGGCTGCTCCAACATCAGTGATGCCTT...CTGAACAAAGCAGAAGAGAAGGGCCTGCTGTTGGGAGCTGGTCCTCACGCAAGG
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000130320.8
CDS-3UTR CAA 90 bp TTGAGCAACCTTGTCCTTGGTGCCCACAGAACCAGAAACCGACAGCAGAGATCAAAGGCATCACTGATGTaGGAGCAGCCAGCTGACTGG +
Preference number: 5 (lower is better)
Translates to: LSNLVLGAHRTRNRQQRSKASLM*EQPADW
Trigger: CCAGTCAGCTGGCTGCTCCAACATCAGTGATGCCTT...TGATCTCTGCTGTCGGTTTCTGGTTCTGTGGGCACCAAGGACAAGGTTGCTCAA
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000117597.2
ENSMUST00000120344.8
ENSMUST00000130320.8
CDS-3UTR CAA 90 bp CCCCTCTTTGAGCAACCTTGTCCTTGGTGCCCACAGAACCAGAAACCGACAGCATGGAAGGTTCAGTACTaGCCGTGTGAAAGCCAGAAG +
Preference number: 5 (lower is better)
Translates to: PLFEQPCPWCPQNQKPTAWKVQY*PCESQK
Trigger: CTTCTGGCTTTCACACGGCAAGTACTGAACCTTCCA...TGCTGTCGGTTTCTGGTTCTGTGGGCACCAAGGACAAGGTTGCTCAAAGAGGGG
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000117597.2
ENSMUST00000120344.8
ENSMUST00000130320.8
CDS-3UTR CAA 90 bp GCTGACCCCTCTTTGAGCAACCTTGTCCTTGGTGCCCACAGAACCAGAAACCGATGGAAGGTTCAGTACTaGCCGTGTGAAAGCCAGAAG +
Preference number: 5 (lower is better)
Translates to: ADPSLSNLVLGAHRTRNRWKVQY*PCESQK
Trigger: CTTCTGGCTTTCACACGGCAAGTACTGAACCTTCCA...TCGGTTTCTGGTTCTGTGGGCACCAAGGACAAGGTTGCTCAAAGAGGGGTCAGC
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000117597.2
ENSMUST00000120344.8
ENSMUST00000130320.8
CDS-3UTR CAA 90 bp CTCTTTGAGCAACCTTGTCCTTGGTGCCCACAGAACCAGAAACCGACAGCAGAGTACACCAGCTGGTCTTaGAAGAGACGAGAGAGCTTC +
Preference number: 5 (lower is better)
Translates to: LFEQPCPWCPQNQKPTAEYTSWS*KRRESF
Trigger: GAAGCTCTCTCGTCTCTTCAAAGACCAGCTGGTGTA...CTCTGCTGTCGGTTTCTGGTTCTGTGGGCACCAAGGACAAGGTTGCTCAAAGAG
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000117597.2
ENSMUST00000120344.8
ENSMUST00000130320.8
CDS-3UTR CAA 90 bp AAGGCACAGAATACCCACACCATTTCTCTTTCCCCAATGCTTCTGGGCTGCTGCTGGAAGGTTCAGTACTaGCCGTGTGAAAGCCAGAAG +
Preference number: 5 (lower is better)
Translates to: KAQNTHTISLSPMLLGCCWKVQY*PCESQK
Trigger: CTTCTGGCTTTCACACGGCAAGTACTGAACCTTCCA...GCAGCAGCCCAGAAGCATTGGGGAAAGAGAAATGGTGTGGGTATTCTGTGCCTT
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000130320.8
CDS GCA 90 bp GGTCTCTTCATCTCCAGTGAGGGCATCCTTGTTGTTCAATGTAATTaGAAATCGGGTATCAGAACTGAACCCCAACGTGGGCAGCAGGAC +
Preference number: 5 (lower is better)
Translates to: GLFISSEGILVVQCN*KSGIRTEPQRGQQD
Trigger: GTCCTGCTGCCCACGTTGGGGTTCAGTTCTGATACCCGATTTGCAATTACATTGAACAACAAGGATGCCCTCACTGGAGATGAAGAGACC
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000130320.8
CDS GCA 90 bp GGGGTGGCAGCCAAAGAAGGTTGGTCATTATCCTGGAGTGAGGAATaGTCTGTATCTGTAGATGAAGGTAAGTTAGGTGCCGGCATGTCA +
Preference number: 5 (lower is better)
Translates to: GVAAKEGWSLSWSEE*SVSVDEGKLGAGMS
Trigger: TGACATGCCGGCACCTAACTTACCTTCATCTACAGATACAGAGCATTCCTCACTCCAGGATAATGACCAACCTTCTTTGGCTGCCACCCC
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000130320.8
CDS-3UTR CAA 90 bp GTCCTTGGTGCCCACAGAACCAGAAACCGACAGCAGAGATCAGCATCCAAGGAACTCAGCTTCAACATTTaGACTAGGCCCTTCCATACT +
Preference number: 5 (lower is better)
Translates to: VLGAHRTRNRQQRSASKELSFNI*TRPFHT
Trigger: AGTATGGAAGGGCCTAGTCAAAATGTTGAAGCTGAG...TTCCTTGGATGCTGATCTCTGCTGTCGGTTTCTGGTTCTGTGGGCACCAAGGAC
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000117597.2
ENSMUST00000120344.8
ENSMUST00000130320.8
CDS-3UTR CAA 90 bp ACCTTGTCCTTGGTGCCCACAGAACCAGAAACCGACAGCAGAGATCAGCATCCAGTTTGTATACACCACTaGACTTCCACTTCTCAGGCA +
Preference number: 5 (lower is better)
Translates to: TLSLVPTEPETDSRDQHPVCIHH*TSTSQA
Trigger: TGCCTGAGAAGTGGAAGTCAAGTGGTGTATACAAAC...TGGATGCTGATCTCTGCTGTCGGTTTCTGGTTCTGTGGGCACCAAGGACAAGGT
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000117597.2
ENSMUST00000120344.8
ENSMUST00000130320.8
CDS-3UTR CAA 90 bp CCCTCTTTGAGCAACCTTGTCCTTGGTGCCCACAGAACCAGAAACCGACAGCAGTGTGTGTACTGCAGTTaGTATACACCACTTGACTTC +
Preference number: 5 (lower is better)
Translates to: PSLSNLVLGAHRTRNRQQCVYCS*YTPLDF
Trigger: GAAGTCAAGTGGTGTATACAAACTGCAGTACACACA...CTGCTGTCGGTTTCTGGTTCTGTGGGCACCAAGGACAAGGTTGCTCAAAGAGGG
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000117597.2
ENSMUST00000120344.8
ENSMUST00000130320.8
CDS-3UTR CAA 90 bp CCCCTCTTTGAGCAACCTTGTCCTTGGTGCCCACAGAACCAGAAACCGACAGCATCATGGCATCCTGAATaGACTCAGCTTCAACATTTT +
Preference number: 5 (lower is better)
Translates to: PLFEQPCPWCPQNQKPTASWHPE*TQLQHF
Trigger: AAAATGTTGAAGCTGAGTCAATTCAGGATGCCATGA...TGCTGTCGGTTTCTGGTTCTGTGGGCACCAAGGACAAGGTTGCTCAAAGAGGGG
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000001837.14
ENSMUST00000117597.2
ENSMUST00000120344.8
ENSMUST00000130320.8
CDS-3UTR CAA 90 bp AGAAACCGACAGCAGAGATCAGCATCCAAGGAAACAGCATCCAGTTTCCATAAAAAGGCATCACTGATGTaGGAGCAGCCAGCTGACTGG +
Preference number: 5 (lower is better)
Translates to: RNRQQRSASKETASSFHKKASLM*EQPADW
Trigger: CCAGTCAGCTGGCTGCTCCAACATCAGTGATGCCTT...TTTATGGAAACTGGATGCTGTTTCCTTGGATGCTGATCTCTGCTGTCGGTTTCT
49% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000117597.2
ENSMUST00000120344.8
ENSMUST00000130320.8
CDS-3UTR CAA 90 bp GTCCTTGGTGCCCACAGAACCAGAAACCGACAGCAGAGATCAGCATCCAAGGAATGTGTGTACTGCAGTTaGTATACACCACTTGACTTC +
Preference number: 5 (lower is better)
Translates to: VLGAHRTRNRQQRSASKECVYCS*YTPLDF
Trigger: GAAGTCAAGTGGTGTATACAAACTGCAGTACACACA...TTCCTTGGATGCTGATCTCTGCTGTCGGTTTCTGGTTCTGTGGGCACCAAGGAC
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000117597.2
ENSMUST00000120344.8
ENSMUST00000130320.8
CDS-3UTR CAA 90 bp GTCCTTGGTGCCCACAGAACCAGAAACCGACAGCAGAGATCAGCATCCAAGGAAAGCTTCTTAAGATCTTaGTACACTTTGGCTGCGCTT +
Preference number: 5 (lower is better)
Translates to: VLGAHRTRNRQQRSASKESFLRS*YTLAAL
Trigger: AAGCGCAGCCAAAGTGTACAAAGATCTTAAGAAGCT...TTCCTTGGATGCTGATCTCTGCTGTCGGTTTCTGGTTCTGTGGGCACCAAGGAC
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000117597.2
ENSMUST00000120344.8
ENSMUST00000130320.8
CDS-3UTR CAA 90 bp CGACAGCAGAGATCAGCATCCAAGGAAACAGCATCCAGTTTCCATAAAGTCTCCTACACCAGCTGGTCTTaGAAGAGACGAGAGAGCTTC +
Preference number: 5 (lower is better)
Translates to: RQQRSASKETASSFHKVSYTSWS*KRRESF
Trigger: GAAGCTCTCTCGTCTCTTCAAAGACCAGCTGGTGTA...GGAGACTTTATGGAAACTGGATGCTGTTTCCTTGGATGCTGATCTCTGCTGTCG
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000117597.2
ENSMUST00000120344.8
ENSMUST00000130320.8
CDS-3UTR CAA 90 bp CCCCTCTTTGAGCAACCTTGTCCTTGGTGCCCACAGAACCAGAAACCGACAGCAGTGAGGGCATCCTTGTaGTTCAATGTAATTGCAAAT +
Preference number: 5 (lower is better)
Translates to: PLFEQPCPWCPQNQKPTAVRASL*FNVIAN
Trigger: ATTTGCAATTACATTGAACAACAAGGATGCCCTCAC...TGCTGTCGGTTTCTGGTTCTGTGGGCACCAAGGACAAGGTTGCTCAAAGAGGGG
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000130320.8
CDS-3UTR CAA 90 bp CTTGTCCTTGGTGCCCACAGAACCAGAAACCGACAGCAGAGATCAGCATCCAAGTCATGGCATCCTGAATaGACTCAGCTTCAACATTTT +
Preference number: 5 (lower is better)
Translates to: LVLGAHRTRNRQQRSASKSWHPE*TQLQHF
Trigger: AAAATGTTGAAGCTGAGTCAATTCAGGATGCCATGA...CTTGGATGCTGATCTCTGCTGTCGGTTTCTGGTTCTGTGGGCACCAAGGACAAG
48% GC, longest homopolymer 4 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000001837.14
ENSMUST00000117597.2
ENSMUST00000120344.8
ENSMUST00000130320.8
CDS-3UTR CAA 90 bp ACCTTGTCCTTGGTGCCCACAGAACCAGAAACCGACAGCAGAGATCAGCATCCATTTCATTACAGAGCATaGGTTCCAATGGATGGAAAC +
Preference number: 5 (lower is better)
Translates to: TLSLVPTEPETDSRDQHPFHYRA*VPMDGN
Trigger: GTTTCCATCCATTGGAACCAATGCTCTGTAATGAAA...TGGATGCTGATCTCTGCTGTCGGTTTCTGGTTCTGTGGGCACCAAGGACAAGGT
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000117597.2
ENSMUST00000120344.8
ENSMUST00000130320.8
CDS-3UTR CAA 90 bp GGTCGGTGTTTGCAGTACAAGCACAAGGACCTGCATTTGATTCTCAGGAGCCATGTTTGTATACACCACTaGACTTCCACTTCTCAGGCA +
Preference number: 5 (lower is better)
Translates to: GRCLQYKHKDLHLILRSHVCIHH*TSTSQA
Trigger: TGCCTGAGAAGTGGAAGTCAAGTGGTGTATACAAAC...ATGGCTCCTGAGAATCAAATGCAGGTCCTTGTGCTTGTACTGCAAACACCGACC
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000130320.8
CDS-3UTR CAA 90 bp TTTGAGCAACCTTGTCCTTGGTGCCCACAGAACCAGAAACCGACAGCAGAGATCTGTGTGTACTGCAGTTaGTATACACCACTTGACTTC +
Preference number: 5 (lower is better)
Translates to: FEQPCPWCPQNQKPTAEICVYCS*YTPLDF
Trigger: GAAGTCAAGTGGTGTATACAAACTGCAGTACACACA...GATCTCTGCTGTCGGTTTCTGGTTCTGTGGGCACCAAGGACAAGGTTGCTCAAA
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000117597.2
ENSMUST00000120344.8
ENSMUST00000130320.8
CDS-3UTR CAA 90 bp TCTTTGAGCAACCTTGTCCTTGGTGCCCACAGAACCAGAAACCGACAGCAGAGAAGCTTCTTAAGATCTTaGTACACTTTGGCTGCGCTT +
Preference number: 5 (lower is better)
Translates to: SLSNLVLGAHRTRNRQQRSFLRS*YTLAAL
Trigger: AAGCGCAGCCAAAGTGTACAAAGATCTTAAGAAGCT...TCTCTGCTGTCGGTTTCTGGTTCTGTGGGCACCAAGGACAAGGTTGCTCAAAGA
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000117597.2
ENSMUST00000120344.8
ENSMUST00000130320.8
CDS-3UTR CAA 90 bp TCTTTGAGCAACCTTGTCCTTGGTGCCCACAGAACCAGAAACCGACAGCAGAGATCATGGCATCCTGAATaGACTCAGCTTCAACATTTT +
Preference number: 5 (lower is better)
Translates to: SLSNLVLGAHRTRNRQQRSWHPE*TQLQHF
Trigger: AAAATGTTGAAGCTGAGTCAATTCAGGATGCCATGA...TCTCTGCTGTCGGTTTCTGGTTCTGTGGGCACCAAGGACAAGGTTGCTCAAAGA
47% GC, longest homopolymer 4 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000001837.14
ENSMUST00000117597.2
ENSMUST00000120344.8
ENSMUST00000130320.8
CDS-3UTR CAA 90 bp AGAAACCGACAGCAGAGATCAGCATCCAAGGAAACAGCATCCAGTTTCCATAAATACACCAGCTGGTCTTaGAAGAGACGAGAGAGCTTC +
Preference number: 5 (lower is better)
Translates to: RNRQQRSASKETASSFHKYTSWS*KRRESF
Trigger: GAAGCTCTCTCGTCTCTTCAAAGACCAGCTGGTGTA...TTTATGGAAACTGGATGCTGTTTCCTTGGATGCTGATCTCTGCTGTCGGTTTCT
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000117597.2
ENSMUST00000120344.8
ENSMUST00000130320.8
CDS CCA 90 bp TGGTACCTGCCCATCCTCTGTTTCATTACAGAGCATTGGTTCCAATaGATGGAAACCAGAAACCTCTTCCATACTCATGGCATCCTGAAT +
Preference number: 5 (lower is better)
Translates to: WYLPILCFITEHWFQ*METRNLFHTHGILN
Trigger: ATTCAGGATGCCATGAGTATGGAAGAGGTTTCTGGTTTCCATCCATTGGAACCAATGCTCTGTAATGAAACAGAGGATGGGCAGGTACCA
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000117597.2
ENSMUST00000120344.8
ENSMUST00000130320.8
CDS-3UTR CAA 90 bp CATTATCAATACCACAATCTCCATCCCAGAGGTGAACCAGAGGGGAGAGACCAGTTTCATTACAGAGCATaGGTTCCAATGGATGGAAAC +
Preference number: 5 (lower is better)
Translates to: HYQYHNLHPRGEPEGRDQFHYRA*VPMDGN
Trigger: GTTTCCATCCATTGGAACCAATGCTCTGTAATGAAA...CTGGTCTCTCCCCTCTGGTTCACCTCTGGGATGGAGATTGTGGTATTGATAATG
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000117597.2
ENSMUST00000120344.8
ENSMUST00000130320.8
CDS-3UTR CAA 90 bp CAAAACATTATCAATACCACAATCTCCATCCCAGAGGTGAACCAGAGGGGAGAGGTTTGTATACACCACTaGACTTCCACTTCTCAGGCA +
Preference number: 5 (lower is better)
Translates to: QNIINTTISIPEVNQRGEVCIHH*TSTSQA
Trigger: TGCCTGAGAAGTGGAAGTCAAGTGGTGTATACAAAC...CTCTCCCCTCTGGTTCACCTCTGGGATGGAGATTGTGGTATTGATAATGTTTTG
46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000117597.2
ENSMUST00000120344.8
ENSMUST00000130320.8
CDS-3UTR CAA 90 bp CGACAGCAGAGATCAGCATCCAAGGAAACAGCATCCAGTTTCCATAAAGTCTCCAGCTTCTTAAGATCTTaGTACACTTTGGCTGCGCTT +
Preference number: 5 (lower is better)
Translates to: RQQRSASKETASSFHKVSSFLRS*YTLAAL
Trigger: AAGCGCAGCCAAAGTGTACAAAGATCTTAAGAAGCT...GGAGACTTTATGGAAACTGGATGCTGTTTCCTTGGATGCTGATCTCTGCTGTCG
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000117597.2
ENSMUST00000120344.8
ENSMUST00000130320.8
CDS-3UTR CAA 90 bp TCTTTGAGCAACCTTGTCCTTGGTGCCCACAGAACCAGAAACCGACAGCAGAGACTGAGCCTCTTTTCTTaGTATGTGCTTCTTTCTATA +
Preference number: 5 (lower is better)
Translates to: SLSNLVLGAHRTRNRQQRLSLFS*YVLLSI
Trigger: TATAGAAAGAAGCACATACAAAGAAAAGAGGCTCAG...TCTCTGCTGTCGGTTTCTGGTTCTGTGGGCACCAAGGACAAGGTTGCTCAAAGA
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000117597.2
ENSMUST00000120344.8
ENSMUST00000130320.8
CDS-3UTR CAA 90 bp GATCGGTCGGTGTTTGCAGTACAAGCACAAGGACCTGCATTTGATTCTCAGGAGCTGAGCCTCTTTTCTTaGTATGTGCTTCTTTCTATA +
Preference number: 5 (lower is better)
Translates to: DRSVFAVQAQGPAFDSQELSLFS*YVLLSI
Trigger: TATAGAAAGAAGCACATACAAAGAAAAGAGGCTCAG...CTCCTGAGAATCAAATGCAGGTCCTTGTGCTTGTACTGCAAACACCGACCGATC
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000130320.8
CDS-3UTR CAA 90 bp CTGCCCATCCTCTGTTTCATTACAGAGCATTGGTTCCAATGGATGGAAACCAGATCATGGCATCCTGAATaGACTCAGCTTCAACATTTT +
Preference number: 5 (lower is better)
Translates to: LPILCFITEHWFQWMETRSWHPE*TQLQHF
Trigger: AAAATGTTGAAGCTGAGTCAATTCAGGATGCCATGA...TCTGGTTTCCATCCATTGGAACCAATGCTCTGTAATGAAACAGAGGATGGGCAG
43% GC, longest homopolymer 4 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000001837.14
CDS-3UTR CAA 90 bp AGAAACCGACAGCAGAGATCAGCATCCAAGGAAACAGCATCCAGTTTCCATAAATTTCATTACAGAGCATaGGTTCCAATGGATGGAAAC +
Preference number: 5 (lower is better)
Translates to: RNRQQRSASKETASSFHKFHYRA*VPMDGN
Trigger: GTTTCCATCCATTGGAACCAATGCTCTGTAATGAAA...TTTATGGAAACTGGATGCTGTTTCCTTGGATGCTGATCTCTGCTGTCGGTTTCT
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000117597.2
ENSMUST00000120344.8
ENSMUST00000130320.8
CDS-3UTR CAA 90 bp CACATACACACATACTACATGGGGCAACCTAACATTCATCCACAAAAGCATGTTCCAGTGAGGGCATCCTaGTTGTTCAATGTAATTGCA +
Preference number: 5 (lower is better)
Translates to: HIHTYYMGQPNIHPQKHVPVRAS*LFNVIA
Trigger: TGCAATTACATTGAACAACAAGGATGCCCTCACTGG...AACATGCTTTTGTGGATGAATGTTAGGTTGCCCCATGTAGTATGTGTGTATGTG
42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000130320.8
CDS-3UTR CAA 90 bp AGAAACCGACAGCAGAGATCAGCATCCAAGGAAACAGCATCCAGTTTCCATAAACTGAGCCTCTTTTCTTaGTATGTGCTTCTTTCTATA +
Preference number: 5 (lower is better)
Translates to: RNRQQRSASKETASSFHKLSLFS*YVLLSI
Trigger: TATAGAAAGAAGCACATACAAAGAAAAGAGGCTCAG...TTTATGGAAACTGGATGCTGTTTCCTTGGATGCTGATCTCTGCTGTCGGTTTCT
41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000117597.2
ENSMUST00000120344.8
ENSMUST00000130320.8
CDS CCA 72 bp GACCTGGCTGAGGTGCGCGCGCAGCTGCCCGAGCGTTaGCTCCGACTCCGGCACCTCGAGCGGCTGGGTCCG +
Preference number: 6 (lower is better)
Translates to: DLAEVRAQLPER*LRLRHLERLGP
Trigger: CGGACCCAGCCGCTCGAGGTGCCGGAGTCGGAGCCAACGCTCGGGCAGCTGCGCGCGCACCTCAGCCAGGTC
75% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000001837.14
ENSMUST00000130320.8
ENSMUST00000147168.2
CDS GCA 72 bp GTGGGCAGCAGGACCTGGCTGAGGTGCGCGCGCAGCTaGCCGAGCGTTGGCTCCGACTCCGGCACCTCGAGC +
Preference number: 6 (lower is better)
Translates to: VGSRTWLRCARS*PSVGSDSGTSS
Trigger: GCTCGAGGTGCCGGAGTCGGAGCCAACGCTCGGGCAGCTGCGCGCGCACCTCAGCCAGGTCCTGCTGCCCAC
74% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000001837.14
ENSMUST00000130320.8
ENSMUST00000147168.2
CDS GCA 72 bp CTGAACCCCAACGTGGGCAGCAGGACCTGGCTGAGGTaGGCGCGCAGCTGCCCGAGCGTTGGCTCCGACTCC +
Preference number: 6 (lower is better)
Translates to: LNPNVGSRTWLR*ARSCPSVGSDS
Trigger: GGAGTCGGAGCCAACGCTCGGGCAGCTGCGCGCGCACCTCAGCCAGGTCCTGCTGCCCACGTTGGGGTTCAG
71% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000001837.14
ENSMUST00000130320.8
ENSMUST00000147168.2
CDS CCA 72 bp AGGCCCTTCCTGAACCCCAACGTGGGCAGCAGGACCTaGCTGAGGTGCGCGCGCAGCTGCCCGAGCGTTGGC +
Preference number: 6 (lower is better)
Translates to: RPFLNPNVGSRT*LRCARSCPSVG
Trigger: GCCAACGCTCGGGCAGCTGCGCGCGCACCTCAGCCAGGTCCTGCTGCCCACGTTGGGGTTCAGGAAGGGCCT
71% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000001837.14
CDS CCA 72 bp GCTCTGTATCTGAACCCCAACGTGGGCAGCAGGACCTaGCTGAGGTGCGCGCGCAGCTGCCCGAGCGTTGGC +
Preference number: 6 (lower is better)
Translates to: ALYLNPNVGSRT*LRCARSCPSVG
Trigger: GCCAACGCTCGGGCAGCTGCGCGCGCACCTCAGCCAGGTCCTGCTGCCCACGTTGGGGTTCAGATACAGAGC
68% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000147168.2
CDS CCA 72 bp GTATCAGAACTGAACCCCAACGTGGGCAGCAGGACCTaGCTGAGGTGCGCGCGCAGCTGCCCGAGCGTTGGC +
Preference number: 6 (lower is better)
Translates to: VSELNPNVGSRT*LRCARSCPSVG
Trigger: GCCAACGCTCGGGCAGCTGCGCGCGCACCTCAGCCAGGTCCTGCTGCCCACGTTGGGGTTCAGTTCTGATAC
67% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000130320.8
CDS CCA 72 bp CTTGGGGTGGCAGCCAAAGAAGGTTGGTCATTATCCTaGAGTGAGGAATGCTCTGTATCGGGGAGGACAGCG +
Preference number: 6 (lower is better)
Translates to: LGVAAKEGWSLS*SEECSVSGRTA
Trigger: CGCTGTCCTCCCCGATACAGAGCATTCCTCACTCCAGGATAATGACCAACCTTCTTTGGCTGCCACCCCAAG
56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000120344.8
CDS CCA 72 bp CTTGGGGTGGCAGCCAAAGAAGGTTGGTCATTATCCTaGAGTGAGGAATGCTCTGTATCTGTAGATGAAGGT +
Preference number: 6 (lower is better)
Translates to: LGVAAKEGWSLS*SEECSVSVDEG
Trigger: ACCTTCATCTACAGATACAGAGCATTCCTCACTCCAGGATAATGACCAACCTTCTTTGGCTGCCACCCCAAG
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000117597.2
ENSMUST00000130320.8
CDS GCA 72 bp ATCTCCAGTGAGGGCATCCTTGTTGTTCAATGTAATTaGAAATCGGGTATCAGAACTGAACCCCAACGTGGG +
Preference number: 6 (lower is better)
Translates to: ISSEGILVVQCN*KSGIRTEPQRG
Trigger: CCCACGTTGGGGTTCAGTTCTGATACCCGATTTGCAATTACATTGAACAACAAGGATGCCCTCACTGGAGAT
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000130320.8
CDS CAA 90 bp CCATATGAAGCCAAGGTCTCTTCATCTCCAGTGAGGGCATCCTTGTaGTTCAATGTAATTGCAAATCGGGTATCAGAACTGAACCCCAAC +
Preference number: 6 (lower is better)
Translates to: PYEAKVSSSPVRASL*FNVIANRVSELNPN
Trigger: GTTGGGGTTCAGTTCTGATACCCGATTTGCAATTACATTGAACAACAAGGATGCCCTCACTGGAGATGAAGAGACCTTGGCTTCATATGG
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000130320.8
CDS CAA 90 bp ATCCCATATGAAGCCAAGGTCTCTTCATCTCCAGTGAGGGCATCCTaGTTGTTCAATGTAATTGCAAATCGGGTATCAGAACTGAACCCC +
Preference number: 6 (lower is better)
Translates to: IPYEAKVSSSPVRAS*LFNVIANRVSELNP
Trigger: GGGGTTCAGTTCTGATACCCGATTTGCAATTACATTGAACAACAAGGATGCCCTCACTGGAGATGAAGAGACCTTGGCTTCATATGGGAT
46% GC, longest homopolymer 4 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000130320.8
CDS CAA 72 bp GCCAAGGTCTCTTCATCTCCAGTGAGGGCATCCTTGTaGTTCAATGTAATTGCAAATCGGGTATCAGAACTG +
Preference number: 6 (lower is better)
Translates to: AKVSSSPVRASL*FNVIANRVSEL
Trigger: CAGTTCTGATACCCGATTTGCAATTACATTGAACAACAAGGATGCCCTCACTGGAGATGAAGAGACCTTGGC
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000130320.8
CDS CAA 72 bp GAAGCCAAGGTCTCTTCATCTCCAGTGAGGGCATCCTaGTTGTTCAATGTAATTGCAAATCGGGTATCAGAA +
Preference number: 6 (lower is better)
Translates to: EAKVSSSPVRAS*LFNVIANRVSE
Trigger: TTCTGATACCCGATTTGCAATTACATTGAACAACAAGGATGCCCTCACTGGAGATGAAGAGACCTTGGCTTC
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000130320.8