RADAR | Search for sensor designs | Human genes | Mouse genes | Code

Pregenerated sensors for FBXO5 (Mus musculus)

Ensembl gene IDs: ENSMUSG00000019773

Ensembl transcript IDs: ENSMUST00000019907.8

Found 39 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).

Type Sensor Details
CDS-3UTR CCA 90 bp CTGAAGCAAATGTTCTCAAGACTCCATAAAAAGACCACAACCCTCCCTTGCCAAGCAGCAAGGTTTTGTTaGGATGCTGGTCCGGGCTCT +
Preference number: 4 (lower is better)
Translates to: LKQMFSRLHKKTTTLPCQAARFC*DAGPGS
Trigger: AGAGCCCGGACCAGCATCCCAACAAAACCTTGCTGC...TTGGCAAGGGAGGGTTGTGGTCTTTTTATGGAGTCTTGAGAACATTTGCTTCAG
49% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000019907.8
CDS-3UTR TCA 90 bp CTGAAGCAAATGTTCTCAAGACTCCATAAAAAGACCACAACCCTCCCTTGCCAACACGGTCACTTTGTGTaGAAGATGAGTAGCCACTGT +
Preference number: 4 (lower is better)
Translates to: LKQMFSRLHKKTTTLPCQHGHFV*KMSSHC
Trigger: ACAGTGGCTACTCATCTTTCACACAAAGTGACCGTG...TTGGCAAGGGAGGGTTGTGGTCTTTTTATGGAGTCTTGAGAACATTTGCTTCAG
46% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000019907.8
CDS-3UTR TCA 90 bp CTGAAGCAAATGTTCTCAAGACTCCATAAAAAGACCACAACCCTCCCTTGCCAAACTTTGTGTGAAAGATaGGTAGCCACTGTCCTCATA +
Preference number: 4 (lower is better)
Translates to: LKQMFSRLHKKTTTLPCQTLCER*VATVLI
Trigger: TATGAGGACAGTGGCTACTCATCTTTCACACAAAGT...TTGGCAAGGGAGGGTTGTGGTCTTTTTATGGAGTCTTGAGAACATTTGCTTCAG
43% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000019907.8
CDS-3UTR GCA 90 bp GAATCTCGAATACTGAAGCAAATGTTCTCAAGACTCCATAAAAAGACCACAACCAAGGTTTTGTTGGGATaGTGGTCCGGGCTCTGTGAT +
Preference number: 4 (lower is better)
Translates to: ESRILKQMFSRLHKKTTTKVLLG*WSGLCD
Trigger: ATCACAGAGCCCGGACCAGCATCCCAACAAAACCTT...GGTTGTGGTCTTTTTATGGAGTCTTGAGAACATTTGCTTCAGTATTCGAGATTC
43% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000019907.8
CDS-3UTR GCA 90 bp GAATCTCGAATACTGAAGCAAATGTTCTCAAGACTCCATAAAAAGACCACAACCGACAGCTTTCCCGTTTaGAGACTGCTCGCTCTAAAT +
Preference number: 4 (lower is better)
Translates to: ESRILKQMFSRLHKKTTTDSFPV*RLLALN
Trigger: ATTTAGAGCGAGCAGTCTGCAAACGGGAAAGCTGTC...GGTTGTGGTCTTTTTATGGAGTCTTGAGAACATTTGCTTCAGTATTCGAGATTC
42% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000019907.8
CDS-3UTR TCA 90 bp CTGAAGCAAATGTTCTCAAGACTCCATAAAAAGACCACAACCCTCCCTTGCCAAGTGTTTTGTACGCGTTaGTTTTCCTTGTTATCATGT +
Preference number: 4 (lower is better)
Translates to: LKQMFSRLHKKTTTLPCQVFCTR*FSLLSC
Trigger: ACATGATAACAAGGAAAATCAACGCGTACAAAACAC...TTGGCAAGGGAGGGTTGTGGTCTTTTTATGGAGTCTTGAGAACATTTGCTTCAG
41% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 1 transcripts:
ENSMUST00000019907.8
CDS-3UTR CCA 90 bp GAATCTCGAATACTGAAGCAAATGTTCTCAAGACTCCATAAAAAGACCACAACCCCTCATACAGTCTACTaGCCTCTAGCTCTTCTGTTT +
Preference number: 4 (lower is better)
Translates to: ESRILKQMFSRLHKKTTTPHTVY*PLALLF
Trigger: AAACAGAAGAGCTAGAGGCCAGTAGACTGTATGAGG...GGTTGTGGTCTTTTTATGGAGTCTTGAGAACATTTGCTTCAGTATTCGAGATTC
41% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000019907.8
CDS-3UTR GCA 90 bp ACAAACTTGGTAAAGCGAATCTCGAATACTGAAGCAAATGTTCTCAAGACTCCAGTTCTTCAATGTCTTTaGCACCTCCACGAACTCATT +
Preference number: 4 (lower is better)
Translates to: TNLVKRISNTEANVLKTPVLQCL*HLHELI
Trigger: AATGAGTTCGTGGAGGTGGCAAAGACATTGAAGAAC...TGGAGTCTTGAGAACATTTGCTTCAGTATTCGAGATTCGCTTTACCAAGTTTGT
40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000019907.8
CDS-3UTR GCA 90 bp GAATCTCGAATACTGAAGCAAATGTTCTCAAGACTCCATAAAAAGACCACAACCATAGTGGTCATATTTTaGAGGGAAATTACAGCGAAC +
Preference number: 4 (lower is better)
Translates to: ESRILKQMFSRLHKKTTTIVVIF*REITAN
Trigger: GTTCGCTGTAATTTCCCTGCAAAATATGACCACTAT...GGTTGTGGTCTTTTTATGGAGTCTTGAGAACATTTGCTTCAGTATTCGAGATTC
38% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000019907.8
CDS-3UTR GCA 90 bp GAATCTCGAATACTGAAGCAAATGTTCTCAAGACTCCATAAAAAGACCACAACCTGGCTTTTAGGATCTTaGCATTCAAACAGTCTTTGT +
Preference number: 4 (lower is better)
Translates to: ESRILKQMFSRLHKKTTTWLLGS*HSNSLC
Trigger: ACAAAGACTGTTTGAATGGCAAGATCCTAAAAGCCA...GGTTGTGGTCTTTTTATGGAGTCTTGAGAACATTTGCTTCAGTATTCGAGATTC
38% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000019907.8
CDS TCA 90 bp CAGGACAGGCAGCAAGGTTTTGTTGGGATGCTGGTCCGGGCTCTGTaGTGGCAGCAGACGGGCCTGGGGACTGTTTCTGAAATTCTCCAG +
Preference number: 5 (lower is better)
Translates to: QDRQQGFVGMLVRAL*WQQTGLGTVSEILQ
Trigger: CTGGAGAATTTCAGAAACAGTCCCCAGGCCCGTCTGCTGCCATCACAGAGCCCGGACCAGCATCCCAACAAAACCTTGCTGCCTGTCCTG
58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000019907.8
CDS CCA 90 bp TTGTTGGGATGCTGGTCCGGGCTCTGTGATGGCAGCAGACGGGCCTaGGGACTGTTTCTGAAATTCTCCAGGATAAGGATGCCATCGTCA +
Preference number: 5 (lower is better)
Translates to: LLGCWSGLCDGSRRA*GLFLKFSRIRMPSS
Trigger: TGACGATGGCATCCTTATCCTGGAGAATTTCAGAAACAGTCCCCAGGCCCGTCTGCTGCCATCACAGAGCCCGGACCAGCATCCCAACAA
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000019907.8
CDS-3UTR CAA 90 bp CTGAAGCAAATGTTCTCAAGACTCCATAAAAAGACCACAACCCTCCCTTGCCAAGGCAGCAAGGTTTTGTaGGGATGCTGGTCCGGGCTC +
Preference number: 5 (lower is better)
Translates to: LKQMFSRLHKKTTTLPCQGSKVL*GCWSGL
Trigger: GAGCCCGGACCAGCATCCCAACAAAACCTTGCTGCC...TTGGCAAGGGAGGGTTGTGGTCTTTTTATGGAGTCTTGAGAACATTTGCTTCAG
51% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000019907.8
CDS GCA 90 bp ACAGCGAACACAGGCTTTGAGGCTTTCGTTGTTCTTCAATGTCTTTaGCACCTCCACGAACTCATTGTGCCGGCTGTAGGTAGAAACTCT +
Preference number: 5 (lower is better)
Translates to: TANTGFEAFVVLQCL*HLHELIVPAVGRNS
Trigger: AGAGTTTCTACCTACAGCCGGCACAATGAGTTCGTGGAGGTGGCAAAGACATTGAAGAACAACGAAAGCCTCAAAGCCTGTGTTCGCTGT
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000019907.8
CDS-3UTR CAA 90 bp CTGAAGCAAATGTTCTCAAGACTCCATAAAAAGACCACAACCCTCCCTTGCCAATGGAACGCCCCCTTATaGTTTTCCAGTATCTTCTTC +
Preference number: 5 (lower is better)
Translates to: LKQMFSRLHKKTTTLPCQWNAPL*FSSIFF
Trigger: GAAGAAGATACTGGAAAACAATAAGGGGGCGTTCCA...TTGGCAAGGGAGGGTTGTGGTCTTTTTATGGAGTCTTGAGAACATTTGCTTCAG
44% GC, longest homopolymer 5 nt, total homopolymer stretches 14 nt.
Matches the following 1 transcripts:
ENSMUST00000019907.8
CDS CCA 90 bp TTATCATGTCCCACAATTGGTGAGTCGATGAAAGACAACCTCTCATaGTTTCTAACACAGTCATTACAGGAAGGTTCCAAACACACGGGA +
Preference number: 5 (lower is better)
Translates to: LSCPTIGESMKDNLS*FLTQSLQEGSKHTG
Trigger: TCCCGTGTGTTTGGAACCTTCCTGTAATGACTGTGTTAGAAACCATGAGAGGTTGTCTTTCATCGACTCACCAATTGTGGGACATGATAA
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000019907.8
CDS-3UTR CAA 90 bp ACAAACTTGGTAAAGCGAATCTCGAATACTGAAGCAAATGTTCTCAAGACTCCACAGCGAACACAGGCTTaGAGGCTTTCGTTGTTCTTC +
Preference number: 5 (lower is better)
Translates to: TNLVKRISNTEANVLKTPQRTQA*RLSLFF
Trigger: GAAGAACAACGAAAGCCTCAAAGCCTGTGTTCGCTG...TGGAGTCTTGAGAACATTTGCTTCAGTATTCGAGATTCGCTTTACCAAGTTTGT
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000019907.8
CDS-3UTR CAA 90 bp CTGAAGCAAATGTTCTCAAGACTCCATAAAAAGACCACAACCCTCCCTTGCCAATGTGTTTTGTACGCGTaGATTTTCCTTGTTATCATG +
Preference number: 5 (lower is better)
Translates to: LKQMFSRLHKKTTTLPCQCVLYA*IFLVIM
Trigger: CATGATAACAAGGAAAATCAACGCGTACAAAACACA...TTGGCAAGGGAGGGTTGTGGTCTTTTTATGGAGTCTTGAGAACATTTGCTTCAG
41% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 1 transcripts:
ENSMUST00000019907.8
CDS-3UTR CAA 90 bp CTGAAGCAAATGTTCTCAAGACTCCATAAAAAGACCACAACCCTCCCTTGCCAAGCTCTTCTGTTTCGTTaGAACTATCTAGTGTGTTTT +
Preference number: 5 (lower is better)
Translates to: LKQMFSRLHKKTTTLPCQALLFR*NYLVCF
Trigger: AAAACACACTAGATAGTTCAAACGAAACAGAAGAGC...TTGGCAAGGGAGGGTTGTGGTCTTTTTATGGAGTCTTGAGAACATTTGCTTCAG
41% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000019907.8
CDS-3UTR CAA 90 bp GAATCTCGAATACTGAAGCAAATGTTCTCAAGACTCCATAAAAAGACCACAACCTGTTCTTCAATGTCTTaGCCACCTCCACGAACTCAT +
Preference number: 5 (lower is better)
Translates to: ESRILKQMFSRLHKKTTTCSSMS*PPPRTH
Trigger: ATGAGTTCGTGGAGGTGGCAAAGACATTGAAGAACA...GGTTGTGGTCTTTTTATGGAGTCTTGAGAACATTTGCTTCAGTATTCGAGATTC
41% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000019907.8
CDS-3UTR CAA 90 bp ACAAACTTGGTAAAGCGAATCTCGAATACTGAAGCAAATGTTCTCAAGACTCCAGCTTTGAGGCTTTCGTaGTTCTTCAATGTCTTTGCC +
Preference number: 5 (lower is better)
Translates to: TNLVKRISNTEANVLKTPALRLS*FFNVFA
Trigger: GGCAAAGACATTGAAGAACAACGAAAGCCTCAAAGC...TGGAGTCTTGAGAACATTTGCTTCAGTATTCGAGATTCGCTTTACCAAGTTTGT
41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000019907.8
CDS-3UTR CAA 90 bp CTGAAGCAAATGTTCTCAAGACTCCATAAAAAGACCACAACCCTCCCTTGCCAAAATAGTGGTCATATTTaGCAGGGAAATTACAGCGAA +
Preference number: 5 (lower is better)
Translates to: LKQMFSRLHKKTTTLPCQNSGHI*QGNYSE
Trigger: TTCGCTGTAATTTCCCTGCAAAATATGACCACTATT...TTGGCAAGGGAGGGTTGTGGTCTTTTTATGGAGTCTTGAGAACATTTGCTTCAG
41% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000019907.8
CDS TCA 90 bp GTTTTGTACGCGTTGATTTTCCTTGTTATCATGTCCCACAATTGGTaGGTCGATGAAAGACAACCTCTCATGGTTTCTAACACAGTCATT +
Preference number: 5 (lower is better)
Translates to: VLYALIFLVIMSHNW*VDERQPLMVSNTVI
Trigger: AATGACTGTGTTAGAAACCATGAGAGGTTGTCTTTCATCGACTCACCAATTGTGGGACATGATAACAAGGAAAATCAACGCGTACAAAAC
40% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000019907.8
CDS GCA 90 bp CACACAGACACTTTGTACAATATTCAAATTGACAGCTTTCCCGTTTaGAGACTGCTCGCTCTAAATAGTGGTCATATTTTGCAGGGAAAT +
Preference number: 5 (lower is better)
Translates to: HTDTLYNIQIDSFPV*RLLALNSGHILQGN
Trigger: ATTTCCCTGCAAAATATGACCACTATTTAGAGCGAGCAGTCTGCAAACGGGAAAGCTGTCAATTTGAATATTGTACAAAGTGTCTGTGTG
40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000019907.8
CDS-3UTR CAA 90 bp ACAAACTTGGTAAAGCGAATCTCGAATACTGAAGCAAATGTTCTCAAGACTCCACTTGCCAATTATATTTaGCAGTCTAAAGTTCCCGCT +
Preference number: 5 (lower is better)
Translates to: TNLVKRISNTEANVLKTPLANYI*QSKVPA
Trigger: AGCGGGAACTTTAGACTGCAAAATATAATTGGCAAG...TGGAGTCTTGAGAACATTTGCTTCAGTATTCGAGATTCGCTTTACCAAGTTTGT
39% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000019907.8
CDS CCA 72 bp TGCTGGTCCGGGCTCTGTGATGGCAGCAGACGGGCCTaGGGACTGTTTCTGAAATTCTCCAGGATAAGGATG +
Preference number: 6 (lower is better)
Translates to: CWSGLCDGSRRA*GLFLKFSRIRM
Trigger: CATCCTTATCCTGGAGAATTTCAGAAACAGTCCCCAGGCCCGTCTGCTGCCATCACAGAGCCCGGACCAGCA
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000019907.8
CDS CCA 72 bp CTCTTTCAAAATGCAGGACAGGCAGCAAGGTTTTGTTaGGATGCTGGTCCGGGCTCTGTGATGGCAGCAGAC +
Preference number: 6 (lower is better)
Translates to: LFQNAGQAARFC*DAGPGSVMAAD
Trigger: GTCTGCTGCCATCACAGAGCCCGGACCAGCATCCCAACAAAACCTTGCTGCCTGTCCTGCATTTTGAAAGAG
54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000019907.8
CDS TCA 72 bp AAGGATGCCATCGTCACGGTCACTTTGTGTGAAAGATaGGTAGCCACTGTCCTCATACAGTCTACTGGCCTC +
Preference number: 6 (lower is better)
Translates to: KDAIVTVTLCER*VATVLIQSTGL
Trigger: GAGGCCAGTAGACTGTATGAGGACAGTGGCTACTCATCTTTCACACAAAGTGACCGTGACGATGGCATCCTT
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000019907.8
CDS GCA 72 bp ACAGGCTTTGAGGCTTTCGTTGTTCTTCAATGTCTTTaGCACCTCCACGAACTCATTGTGCCGGCTGTAGGT +
Preference number: 6 (lower is better)
Translates to: TGFEAFVVLQCL*HLHELIVPAVG
Trigger: ACCTACAGCCGGCACAATGAGTTCGTGGAGGTGGCAAAGACATTGAAGAACAACGAAAGCCTCAAAGCCTGT
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000019907.8
CDS CAA 90 bp TATTTTGCAGGGAAATTACAGCGAACACAGGCTTTGAGGCTTTCGTaGTTCTTCAATGTCTTTGCCACCTCCACGAACTCATTGTGCCGG +
Preference number: 6 (lower is better)
Translates to: YFAGKLQRTQALRLS*FFNVFATSTNSLCR
Trigger: CCGGCACAATGAGTTCGTGGAGGTGGCAAAGACATTGAAGAACAACGAAAGCCTCAAAGCCTGTGTTCGCTGTAATTTCCCTGCAAAATA
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000019907.8
CDS CAA 72 bp GGGAAATTACAGCGAACACAGGCTTTGAGGCTTTCGTaGTTCTTCAATGTCTTTGCCACCTCCACGAACTCA +
Preference number: 6 (lower is better)
Translates to: GKLQRTQALRLS*FFNVFATSTNS
Trigger: TGAGTTCGTGGAGGTGGCAAAGACATTGAAGAACAACGAAAGCCTCAAAGCCTGTGTTCGCTGTAATTTCCC
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000019907.8
CDS CAA 90 bp CCACTGTCCTCAGGCTTCACCACTTCAAGCTCGGAAAGATCAGGGTaGCAATTAAAACACTTCATTGTAACAGAAAGAACAGGGCTTTCT +
Preference number: 6 (lower is better)
Translates to: PLSSGFTTSSSERSG*QLKHFIVTERTGLS
Trigger: AGAAAGCCCTGTTCTTTCTGTTACAATGAAGTGTTTTAATTGCAACCCTGATCTTTCCGAGCTTGAAGTGGTGAAGCCTGAGGACAGTGG
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000019907.8
CDS TCA 72 bp GCGTTGATTTTCCTTGTTATCATGTCCCACAATTGGTaGGTCGATGAAAGACAACCTCTCATGGTTTCTAAC +
Preference number: 6 (lower is better)
Translates to: ALIFLVIMSHNW*VDERQPLMVSN
Trigger: GTTAGAAACCATGAGAGGTTGTCTTTCATCGACTCACCAATTGTGGGACATGATAACAAGGAAAATCAACGC
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000019907.8
CDS CAA 90 bp CACTGTCCTCATACAGTCTACTGGCCTCTAGCTCTTCTGTTTCGTTaGAACTATCTAGTGTGTTTTGTACGCGTTGATTTTCCTTGTTAT +
Preference number: 6 (lower is better)
Translates to: HCPHTVYWPLALLFR*NYLVCFVRVDFPCY
Trigger: ATAACAAGGAAAATCAACGCGTACAAAACACACTAGATAGTTCAAACGAAACAGAAGAGCTAGAGGCCAGTAGACTGTATGAGGACAGTG
41% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000019907.8
CDS CAA 90 bp TGCCATTCAAACAGTCTTTGTTGTTATGGTAAGCACACAGACACTTaGTACAATATTCAAATTGACAGCTTTCCCGTTTGCAGACTGCTC +
Preference number: 6 (lower is better)
Translates to: CHSNSLCCYGKHTDT*YNIQIDSFPVCRLL
Trigger: GAGCAGTCTGCAAACGGGAAAGCTGTCAATTTGAATATTGTACAAAGTGTCTGTGTGCTTACCATAACAACAAAGACTGTTTGAATGGCA
40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000019907.8
CDS CAA 72 bp TCAGGCTTCACCACTTCAAGCTCGGAAAGATCAGGGTaGCAATTAAAACACTTCATTGTAACAGAAAGAACA +
Preference number: 6 (lower is better)
Translates to: SGFTTSSSERSG*QLKHFIVTERT
Trigger: TGTTCTTTCTGTTACAATGAAGTGTTTTAATTGCAACCCTGATCTTTCCGAGCTTGAAGTGGTGAAGCCTGA
40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000019907.8
CDS CAA 72 bp CATACAGTCTACTGGCCTCTAGCTCTTCTGTTTCGTTaGAACTATCTAGTGTGTTTTGTACGCGTTGATTTT +
Preference number: 6 (lower is better)
Translates to: HTVYWPLALLFR*NYLVCFVRVDF
Trigger: AAAATCAACGCGTACAAAACACACTAGATAGTTCAAACGAAACAGAAGAGCTAGAGGCCAGTAGACTGTATG
40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000019907.8
CDS GCA 72 bp ACTTTGTACAATATTCAAATTGACAGCTTTCCCGTTTaGAGACTGCTCGCTCTAAATAGTGGTCATATTTTG +
Preference number: 6 (lower is better)
Translates to: TLYNIQIDSFPV*RLLALNSGHIL
Trigger: CAAAATATGACCACTATTTAGAGCGAGCAGTCTGCAAACGGGAAAGCTGTCAATTTGAATATTGTACAAAGT
38% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000019907.8
CDS CAA 72 bp AACAGTCTTTGTTGTTATGGTAAGCACACAGACACTTaGTACAATATTCAAATTGACAGCTTTCCCGTTTGC +
Preference number: 6 (lower is better)
Translates to: NSLCCYGKHTDT*YNIQIDSFPVC
Trigger: GCAAACGGGAAAGCTGTCAATTTGAATATTGTACAAAGTGTCTGTGTGCTTACCATAACAACAAAGACTGTT
38% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000019907.8