Pregenerated sensors for FBXO48 (Mus musculus)

Ensembl gene IDs: ENSMUSG00000044966

Ensembl transcript IDs: ENSMUST00000061327.2, ENSMUST00000109635.2

Found 12 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).

Type	Sensor	Details
CDS GCA 90 bp	GTTTCCATAAGGAGTCATTGTTTCTTATTGCACAATTCCAACCTGTaGATGTCCTGGAAGCTCTGCATAAACTCTGAATGTCTAGCTGGC	+
Preference number: 5 (lower is better) Translates to: VSIRSHCFLLHNSNL*MSWKLCINSECLAG Trigger: GCCAGCTAGACATTCAGAGTTTATGCAGAGCTTCCAGGACATGCACAGGTTGGAATTGTGCAATAAGAAACAATGACTCCTTATGGAAAC 43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000061327.2 ENSMUST00000109635.2
CDS GCA 90 bp	AACGGATGTTGCTGTATCTGCCACTTAGCCACTCATATTTCACTTTaGTCTTCTGGTAATTTCTTAGGAGTATTACCCTCCAGGTATAAC	+
Preference number: 5 (lower is better) Translates to: NGCCCICHLATHISL*SSGNFLGVLPSRYN Trigger: GTTATACCTGGAGGGTAATACTCCTAAGAAATTACCAGAAGAGCAAAGTGAAATATGAGTGGCTAAGTGGCAGATACAGCAACATCCGTT 41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000061327.2 ENSMUST00000109635.2
CDS CCA 90 bp	TCATCGTCTATTTCTCTTTGGCACACAGCTCTTATGGTCAAGCAGTaGGGTTTCCATAAGGAGTCATTGTTTCTTATTGCACAATTCCAA	+
Preference number: 5 (lower is better) Translates to: SSSISLWHTALMVKQ*GFHKESLFLIAQFQ Trigger: TTGGAATTGTGCAATAAGAAACAATGACTCCTTATGGAAACCCCACTGCTTGACCATAAGAGCTGTGTGCCAAAGAGAAATAGACGATGA 41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000061327.2 ENSMUST00000109635.2
CDS CCA 90 bp	CACTTTTTATATCATCGTCTATTTCTCTTTGGCACACAGCTCTTATaGTCAAGCAGTGGGGTTTCCATAAGGAGTCATTGTTTCTTATTG	+
Preference number: 5 (lower is better) Translates to: HFLYHRLFLFGTQLL*SSSGVSIRSHCFLL Trigger: CAATAAGAAACAATGACTCCTTATGGAAACCCCACTGCTTGACCATAAGAGCTGTGTGCCAAAGAGAAATAGACGATGATATAAAAAGTG 39% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENSMUST00000061327.2 ENSMUST00000109635.2
CDS CCA 72 bp	CCACGTATCTGCATCCATGGGGCACATAGCCTTTTCTaGCAAGTTAACAGGAGAACGGATGTTGCTGTATCT	+
Preference number: 6 (lower is better) Translates to: PRICIHGAHSLF*QVNRRTDVAVS Trigger: AGATACAGCAACATCCGTTCTCCTGTTAACTTGCCAGAAAAGGCTATGTGCCCCATGGATGCAGATACGTGG 49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000061327.2 ENSMUST00000109635.2
CDS CAA 90 bp	CACACAGCTCTTATGGTCAAGCAGTGGGGTTTCCATAAGGAGTCATaGTTTCTTATTGCACAATTCCAACCTGTGCATGTCCTGGAAGCT	+
Preference number: 6 (lower is better) Translates to: HTALMVKQWGFHKES*FLIAQFQPVHVLEA Trigger: AGCTTCCAGGACATGCACAGGTTGGAATTGTGCAATAAGAAACAATGACTCCTTATGGAAACCCCACTGCTTGACCATAAGAGCTGTGTG 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000061327.2 ENSMUST00000109635.2
CDS CAA 90 bp	ATGGGGCACATAGCCTTTTCTGGCAAGTTAACAGGAGAACGGATGTaGCTGTATCTGCCACTTAGCCACTCATATTTCACTTTGCTCTTC	+
Preference number: 6 (lower is better) Translates to: MGHIAFSGKLTGERM*LYLPLSHSYFTLLF Trigger: GAAGAGCAAAGTGAAATATGAGTGGCTAAGTGGCAGATACAGCAACATCCGTTCTCCTGTTAACTTGCCAGAAAAGGCTATGTGCCCCAT 46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000061327.2 ENSMUST00000109635.2
CDS CCA 72 bp	TGTTTCTTATTGCACAATTCCAACCTGTGCATGTCCTaGAAGCTCTGCATAAACTCTGAATGTCTAGCTGGC	+
Preference number: 6 (lower is better) Translates to: CFLLHNSNLCMS*KLCINSECLAG Trigger: GCCAGCTAGACATTCAGAGTTTATGCAGAGCTTCCAGGACATGCACAGGTTGGAATTGTGCAATAAGAAACA 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000061327.2 ENSMUST00000109635.2
CDS CAA 90 bp	TTATGGTCAAGCAGTGGGGTTTCCATAAGGAGTCATTGTTTCTTATaGCACAATTCCAACCTGTGCATGTCCTGGAAGCTCTGCATAAAC	+
Preference number: 6 (lower is better) Translates to: LWSSSGVSIRSHCFL*HNSNLCMSWKLCIN Trigger: GTTTATGCAGAGCTTCCAGGACATGCACAGGTTGGAATTGTGCAATAAGAAACAATGACTCCTTATGGAAACCCCACTGCTTGACCATAA 43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000061327.2 ENSMUST00000109635.2
CDS CCA 72 bp	TATCATCGTCTATTTCTCTTTGGCACACAGCTCTTATaGTCAAGCAGTGGGGTTTCCATAAGGAGTCATTGT	+
Preference number: 6 (lower is better) Translates to: YHRLFLFGTQLL*SSSGVSIRSHC Trigger: ACAATGACTCCTTATGGAAACCCCACTGCTTGACCATAAGAGCTGTGTGCCAAAGAGAAATAGACGATGATA 43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000061327.2 ENSMUST00000109635.2
CDS CAA 72 bp	ATAGCCTTTTCTGGCAAGTTAACAGGAGAACGGATGTaGCTGTATCTGCCACTTAGCCACTCATATTTCACT	+
Preference number: 6 (lower is better) Translates to: IAFSGKLTGERM*LYLPLSHSYFT Trigger: AGTGAAATATGAGTGGCTAAGTGGCAGATACAGCAACATCCGTTCTCCTGTTAACTTGCCAGAAAAGGCTAT 43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000061327.2 ENSMUST00000109635.2
CDS GCA 72 bp	AGGAGTCATTGTTTCTTATTGCACAATTCCAACCTGTaGATGTCCTGGAAGCTCTGCATAAACTCTGAATGT	+
Preference number: 6 (lower is better) Translates to: RSHCFLLHNSNL*MSWKLCINSEC Trigger: ACATTCAGAGTTTATGCAGAGCTTCCAGGACATGCACAGGTTGGAATTGTGCAATAAGAAACAATGACTCCT 42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000061327.2 ENSMUST00000109635.2

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