Pregenerated sensors for FBXO43 (Mus musculus)
Ensembl gene IDs: ENSMUSG00000048230Ensembl transcript IDs: ENSMUST00000058643.4, ENSMUST00000227793.2
Found 115 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR CCA 90 bp | GTATGGGTCTGGAGAGATGGCTCAGTGGTTAAGAGCACTGGCTGTTaGTCTGAAAAACTCGGGTTCAGTTCCCAGCATCCACATGACAGT | + |
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Preference number: 1 (lower is better) Translates to: VWVWRDGSVVKSTGC*SEKLGFSSQHPHDS Trigger: ACTGTCATGTGGATGCTGGGAACTGAACCCGAGTTTTTCAGACCAACAGCCAGTGCTCTTAACCACTGAGCCATCTCTCCAGACCCATAC 51% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000058643.4 |
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| 3UTR CCA 90 bp | GTGTGTTGTCAGTTTCCCTCGTATGGGTCTGGAGAGATGGCTCAGTaGTTAAGAGCACTGGCTGTTGGTCTGAAAAACTCGGGTTCAGTT | + |
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Preference number: 1 (lower is better) Translates to: VCCQFPSYGSGEMAQ*LRALAVGLKNSGSV Trigger: AACTGAACCCGAGTTTTTCAGACCAACAGCCAGTGCTCTTAACCACTGAGCCATCTCTCCAGACCCATACGAGGGAAACTGACAACACAC 50% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000058643.4 |
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| 3UTR-3UTR CCA 90 bp | GTATACATAGTGACTTCAGGAGACCTAGAGCTACATAGTGAGACCCTGTCTTCATTTAATCCCAGCACTTaGGAGGCAGAGGCAAGCGGA | + |
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Preference number: 2 (lower is better) Translates to: VYIVTSGDLELHSETLSSFNPST*EAEASG Trigger: TCCGCTTGCCTCTGCCTCCCAAGTGCTGGGATTAAA...TGAAGACAGGGTCTCACTATGTAGCTCTAGGTCTCCTGAAGTCACTATGTATAC 48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000058643.4 |
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| 3UTR-3UTR TCA 90 bp | GTATACATAGTGACTTCAGGAGACCTAGAGCTACATAGTGAGACCCTGTCTTCATTAATTAGAAATGTGTaGCTTGCCGGGCGTGGTGGC | + |
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Preference number: 2 (lower is better) Translates to: VYIVTSGDLELHSETLSSLIRNV*LAGRGG Trigger: GCCACCACGCCCGGCAAGTCACACATTTCTAATTAA...TGAAGACAGGGTCTCACTATGTAGCTCTAGGTCTCCTGAAGTCACTATGTATAC 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000058643.4 |
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| 3UTR-3UTR GCA 90 bp | TCGTATGGGTCTGGAGAGATGGCTCAGTGGTTAAGAGCACTGGCTGTTGGTCTGATACCCACACATAAATaGAGACAAAACACCAATATG | + |
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Preference number: 2 (lower is better) Translates to: SYGSGEMAQWLRALAVGLIPTHK*RQNTNM Trigger: CATATTGGTGTTTTGTCTGCATTTATGTGTGGGTAT...CAGACCAACAGCCAGTGCTCTTAACCACTGAGCCATCTCTCCAGACCCATACGA 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000058643.4 |
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| 3UTR-3UTR CCA 90 bp | CAAGTGTGTTGTCAGTTTCCCTCGTATGGGTCTGGAGAGATGGCTCAGTGGTTAAACGTCTGTCATCAATaGGAAGATTTGCATGTGTTC | + |
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Preference number: 2 (lower is better) Translates to: QVCCQFPSYGSGEMAQWLNVCHQ*EDLHVF Trigger: GAACACATGCAAATCTTCCCATTGATGACAGACGTT...TAACCACTGAGCCATCTCTCCAGACCCATACGAGGGAAACTGACAACACACTTG 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000058643.4 |
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| 3UTR-3UTR CCA 90 bp | CAATCACCTACATATACAAAATACAAGTGTGTTGTCAGTTTCCCTCGTATGGGTAAGAGCACTGGCTGTTaGTCTGAAAAACTCGGGTTC | + |
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Preference number: 2 (lower is better) Translates to: QSPTYTKYKCVVSFPRMGKSTGC*SEKLGF Trigger: GAACCCGAGTTTTTCAGACCAACAGCCAGTGCTCTT...ACCCATACGAGGGAAACTGACAACACACTTGTATTTTGTATATGTAGGTGATTG 42% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000058643.4 |
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| 3UTR CAA 90 bp | ACACATATATACAGCAATCACCTACATATACAAAATACAAGTGTGTaGTCAGTTTCCCTCGTATGGGTCTGGAGAGATGGCTCAGTGGTT | + |
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Preference number: 2 (lower is better) Translates to: THIYSNHLHIQNTSV*SVSLVWVWRDGSVV Trigger: AACCACTGAGCCATCTCTCCAGACCCATACGAGGGAAACTGACAACACACTTGTATTTTGTATATGTAGGTGATTGCTGTATATATGTGT 41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000058643.4 |
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| 3UTR CCA 72 bp | GTGGTGCAGGACTCTGACCCCAGCTCAGGAGGCAGGTaGACTTCTGTGTGTTCAAGGCCAGCCTGGTATACA | + |
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Preference number: 3 (lower is better) Translates to: VVQDSDPSSGGR*TSVCSRPAWYT Trigger: TGTATACCAGGCTGGCCTTGAACACACAGAAGTCCACCTGCCTCCTGAGCTGGGGTCAGAGTCCTGCACCAC 58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000058643.4 |
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| 3UTR CCA 72 bp | TGGAGAGATGGCTCAGTGGTTAAGAGCACTGGCTGTTaGTCTGAAAAACTCGGGTTCAGTTCCCAGCATCCA | + |
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Preference number: 3 (lower is better) Translates to: WRDGSVVKSTGC*SEKLGFSSQHP Trigger: TGGATGCTGGGAACTGAACCCGAGTTTTTCAGACCAACAGCCAGTGCTCTTAACCACTGAGCCATCTCTCCA 51% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000058643.4 |
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| 3UTR CCA 72 bp | CAGTTTCCCTCGTATGGGTCTGGAGAGATGGCTCAGTaGTTAAGAGCACTGGCTGTTGGTCTGAAAAACTCG | + |
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Preference number: 3 (lower is better) Translates to: QFPSYGSGEMAQ*LRALAVGLKNS Trigger: CGAGTTTTTCAGACCAACAGCCAGTGCTCTTAACCACTGAGCCATCTCTCCAGACCCATACGAGGGAAACTG 51% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000058643.4 |
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| 3UTR CCA 72 bp | AATACAAGTGTGTTGTCAGTTTCCCTCGTATGGGTCTaGAGAGATGGCTCAGTGGTTAAGAGCACTGGCTGT | + |
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Preference number: 3 (lower is better) Translates to: NTSVLSVSLVWV*RDGSVVKSTGC Trigger: ACAGCCAGTGCTCTTAACCACTGAGCCATCTCTCCAGACCCATACGAGGGAAACTGACAACACACTTGTATT 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000058643.4 |
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| 3UTR-3UTR CAA 90 bp | ATCACCTACATATACAAAATACAAGTGTGTTGTCAGTTTCCCTCGTATGGGTCTAGCGGATTTCTGAGTTaGAGGCCAGCCTGGTCTACA | + |
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Preference number: 3 (lower is better) Translates to: ITYIYKIQVCCQFPSYGSSGFLS*RPAWST Trigger: TGTAGACCAGGCTGGCCTCAAACTCAGAAATCCGCT...AGACCCATACGAGGGAAACTGACAACACACTTGTATTTTGTATATGTAGGTGAT 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000058643.4 |
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| CDS-3UTR CCA 90 bp | CCCAGCTCAGGAGGCAGGTGGACTTCTGTGTGTTCAAGGCCAGCCTGGTATACATACTTAGCAGGGGATTaGCACCTCGGGCAAGGCTTT | + |
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Preference number: 4 (lower is better) Translates to: PSSGGRWTSVCSRPAWYTYLAGD*HLGQGF Trigger: AAAGCCTTGCCCGAGGTGCCAATCCCCTGCTAAGTA...TGTATACCAGGCTGGCCTTGAACACACAGAAGTCCACCTGCCTCCTGAGCTGGG 56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000058643.4 |
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| CDS-3UTR CCA 90 bp | GGGTCTGGAGAGATGGCTCAGTGGTTAAGAGCACTGGCTGTTGGTCTGAAAAACCCAAGGGGACAGAGTTaGAACCTGCTCACCACTGGG | + |
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Preference number: 4 (lower is better) Translates to: GSGEMAQWLRALAVGLKNPRGQS*NLLTTG Trigger: CCCAGTGGTGAGCAGGTTCCAACTCTGTCCCCTTGG...GTTTTTCAGACCAACAGCCAGTGCTCTTAACCACTGAGCCATCTCTCCAGACCC 54% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000058643.4 |
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| CDS-3UTR TCA 90 bp | GGGTCTGGAGAGATGGCTCAGTGGTTAAGAGCACTGGCTGTTGGTCTGAAAAACCTGCATTTCATCCTCTaGCTGGGAGCCTTGCTCCTG | + |
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Preference number: 4 (lower is better) Translates to: GSGEMAQWLRALAVGLKNLHFIL*LGALLL Trigger: CAGGAGCAAGGCTCCCAGTCAGAGGATGAAATGCAG...GTTTTTCAGACCAACAGCCAGTGCTCTTAACCACTGAGCCATCTCTCCAGACCC 53% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000058643.4 |
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| CDS-3UTR GCA 90 bp | CCCAGCTCAGGAGGCAGGTGGACTTCTGTGTGTTCAAGGCCAGCCTGGTATACACTATGCCCATCTTCTTaGCAATCAGTCCTGCGAGAA | + |
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Preference number: 4 (lower is better) Translates to: PSSGGRWTSVCSRPAWYTLCPSS*QSVLRE Trigger: TTCTCGCAGGACTGATTGGCAAGAAGATGGGCATAG...TGTATACCAGGCTGGCCTTGAACACACAGAAGTCCACCTGCCTCCTGAGCTGGG 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000058643.4 |
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| CDS-3UTR GCA 90 bp | TCGTATGGGTCTGGAGAGATGGCTCAGTGGTTAAGAGCACTGGCTGTTGGTCTGGGTGAGGGAAGAGCTTaGTACAGGTGTCAGAACATC | + |
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Preference number: 4 (lower is better) Translates to: SYGSGEMAQWLRALAVGLGEGRA*YRCQNI Trigger: GATGTTCTGACACCTGTAGCAAGCTCTTCCCTCACC...CAGACCAACAGCCAGTGCTCTTAACCACTGAGCCATCTCTCCAGACCCATACGA 52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000058643.4 |
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| CDS-3UTR GCA 90 bp | CAAGTGTGTTGTCAGTTTCCCTCGTATGGGTCTGGAGAGATGGCTCAGTGGTTAAGCCCCCTTTTCTTGTaGGGCTGGTACTTAGCAGGG | + |
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Preference number: 4 (lower is better) Translates to: QVCCQFPSYGSGEMAQWLSPLFL*GWYLAG Trigger: CCCTGCTAAGTACCAGCCGCACAAGAAAAGGGGGCT...TAACCACTGAGCCATCTCTCCAGACCCATACGAGGGAAACTGACAACACACTTG 52% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000058643.4 |
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| CDS-3UTR CCA 90 bp | GGGTCTGGAGAGATGGCTCAGTGGTTAAGAGCACTGGCTGTTGGTCTGAAAAACCTTGCTCCTGGAGAGTaGACAGTCTTCTCAACCTCC | + |
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Preference number: 4 (lower is better) Translates to: GSGEMAQWLRALAVGLKNLAPGE*TVFSTS Trigger: GGAGGTTGAGAAGACTGTCCACTCTCCAGGAGCAAG...GTTTTTCAGACCAACAGCCAGTGCTCTTAACCACTGAGCCATCTCTCCAGACCC 52% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000058643.4 |
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| CDS-3UTR GCA 90 bp | GGGTCTGGAGAGATGGCTCAGTGGTTAAGAGCACTGGCTGTTGGTCTGAAAAACTTCTCCTCAGAGCCTTaGAGACTCTCCAAGACACCT | + |
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Preference number: 4 (lower is better) Translates to: GSGEMAQWLRALAVGLKNFSSEP*RLSKTP Trigger: AGGTGTCTTGGAGAGTCTGCAAGGCTCTGAGGAGAA...GTTTTTCAGACCAACAGCCAGTGCTCTTAACCACTGAGCCATCTCTCCAGACCC 51% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000058643.4 |
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| CDS-3UTR CCA 90 bp | GGGTCTGGAGAGATGGCTCAGTGGTTAAGAGCACTGGCTGTTGGTCTGAAAAACCTTTTCTTGTGCGGCTaGTACTTAGCAGGGGATTGG | + |
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Preference number: 4 (lower is better) Translates to: GSGEMAQWLRALAVGLKNLFLCG*YLAGDW Trigger: CCAATCCCCTGCTAAGTACCAGCCGCACAAGAAAAG...GTTTTTCAGACCAACAGCCAGTGCTCTTAACCACTGAGCCATCTCTCCAGACCC 51% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 1 transcripts: ENSMUST00000058643.4 |
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| CDS-3UTR CCA 90 bp | CAAGTGTGTTGTCAGTTTCCCTCGTATGGGTCTGGAGAGATGGCTCAGTGGTTAAAGTTCCGCTTGCTTTaGGCACTCCCTGGGAGAACA | + |
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Preference number: 4 (lower is better) Translates to: QVCCQFPSYGSGEMAQWLKFRLL*ALPGRT Trigger: TGTTCTCCCAGGGAGTGCCCAAAGCAAGCGGAACTT...TAACCACTGAGCCATCTCTCCAGACCCATACGAGGGAAACTGACAACACACTTG 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000058643.4 |
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| CDS-3UTR TCA 90 bp | TCGTATGGGTCTGGAGAGATGGCTCAGTGGTTAAGAGCACTGGCTGTTGGTCTGGTCTCTCACCTCTCCTaGAGAATCAAGAGTTTGGTT | + |
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Preference number: 4 (lower is better) Translates to: SYGSGEMAQWLRALAVGLVSHLS*RIKSLV Trigger: AACCAAACTCTTGATTCTTCAGGAGAGGTGAGAGAC...CAGACCAACAGCCAGTGCTCTTAACCACTGAGCCATCTCTCCAGACCCATACGA 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000058643.4 |
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| CDS-3UTR GCA 90 bp | CCCAGCTCAGGAGGCAGGTGGACTTCTGTGTGTTCAAGGCCAGCCTGGTATACATTGGGAAACCTGAAGTaGTACCTGGCAAATGTTTTT | + |
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Preference number: 4 (lower is better) Translates to: PSSGGRWTSVCSRPAWYTLGNLK*YLANVF Trigger: AAAAACATTTGCCAGGTAGCACTTCAGGTTTCCCAA...TGTATACCAGGCTGGCCTTGAACACACAGAAGTCCACCTGCCTCCTGAGCTGGG 50% GC, longest homopolymer 5 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000058643.4 |
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| CDS-3UTR GCA 90 bp | CAAGTGTGTTGTCAGTTTCCCTCGTATGGGTCTGGAGAGATGGCTCAGTGGTTATTCATAAAGAGCTCCTaGACCAACTGCAGGGCTGGA | + |
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Preference number: 4 (lower is better) Translates to: QVCCQFPSYGSGEMAQWLFIKSS*TNCRAG Trigger: TCCAGCCCTGCAGTTGGTGCAGGAGCTCTTTATGAA...TAACCACTGAGCCATCTCTCCAGACCCATACGAGGGAAACTGACAACACACTTG 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000058643.4 |
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| CDS-3UTR GCA 90 bp | CAAGTGTGTTGTCAGTTTCCCTCGTATGGGTCTGGAGAGATGGCTCAGTGGTTACTGGGAGAACATCTTTaGTACCTCTCGCCTTTGCTG | + |
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Preference number: 4 (lower is better) Translates to: QVCCQFPSYGSGEMAQWLLGEHL*YLSPLL Trigger: CAGCAAAGGCGAGAGGTAGCAAAGATGTTCTCCCAG...TAACCACTGAGCCATCTCTCCAGACCCATACGAGGGAAACTGACAACACACTTG 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000058643.4 |
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| CDS-3UTR GCA 90 bp | CCCAGCTCAGGAGGCAGGTGGACTTCTGTGTGTTCAAGGCCAGCCTGGTATACAACCATAGCTAGGATGTaGTTCAAGTTTCTATACTGT | + |
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Preference number: 4 (lower is better) Translates to: PSSGGRWTSVCSRPAWYTTIARM*FKFLYC Trigger: ACAGTATAGAAACTTGAAGCACATCCTAGCTATGGT...TGTATACCAGGCTGGCCTTGAACACACAGAAGTCCACCTGCCTCCTGAGCTGGG 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000058643.4 |
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| CDS-3UTR GCA 90 bp | ATCACCTACATATACAAAATACAAGTGTGTTGTCAGTTTCCCTCGTATGGGTCTCTGCTCACCACTGGGTaGCTGTGCCTGTGCCTGCAC | + |
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Preference number: 4 (lower is better) Translates to: ITYIYKIQVCCQFPSYGSLLTTG*LCLCLH Trigger: GTGCAGGCACAGGCACAGGCACCCAGTGGTGAGCAG...AGACCCATACGAGGGAAACTGACAACACACTTGTATTTTGTATATGTAGGTGAT 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000058643.4 |
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| CDS-3UTR TCA 90 bp | GGGTCTGGAGAGATGGCTCAGTGGTTAAGAGCACTGGCTGTTGGTCTGAAAAACGTGGAAGTCTTGTGCTaGGAAAAATGTAACCTTGAG | + |
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Preference number: 4 (lower is better) Translates to: GSGEMAQWLRALAVGLKNVEVLC*EKCNLE Trigger: CTCAAGGTTACATTTTTCTCAGCACAAGACTTCCAC...GTTTTTCAGACCAACAGCCAGTGCTCTTAACCACTGAGCCATCTCTCCAGACCC 48% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt. Matches the following 1 transcripts: ENSMUST00000058643.4 |
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| CDS-3UTR GCA 90 bp | TCGTATGGGTCTGGAGAGATGGCTCAGTGGTTAAGAGCACTGGCTGTTGGTCTGTACTTTCCAGAGATCTaGTTTGTGAATCAGAATCCC | + |
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Preference number: 4 (lower is better) Translates to: SYGSGEMAQWLRALAVGLYFPEI*FVNQNP Trigger: GGGATTCTGATTCACAAAGCAGATCTCTGGAAAGTA...CAGACCAACAGCCAGTGCTCTTAACCACTGAGCCATCTCTCCAGACCCATACGA 48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000058643.4 |
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| CDS-3UTR CCA 90 bp | GGGTCTGGAGAGATGGCTCAGTGGTTAAGAGCACTGGCTGTTGGTCTGAAAAACAGCCACAGTTGTCTTTaGAATCTTCAATGGTGGAAG | + |
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Preference number: 4 (lower is better) Translates to: GSGEMAQWLRALAVGLKNSHSCL*NLQWWK Trigger: CTTCCACCATTGAAGATTCCAAAGACAACTGTGGCT...GTTTTTCAGACCAACAGCCAGTGCTCTTAACCACTGAGCCATCTCTCCAGACCC 48% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000058643.4 |
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| CDS-3UTR CCA 90 bp | GGGTCTGGAGAGATGGCTCAGTGGTTAAGAGCACTGGCTGTTGGTCTGAAAAACTCTAGGCTAACACCTTaGCTTATGTTACTTTCCAGA | + |
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Preference number: 4 (lower is better) Translates to: GSGEMAQWLRALAVGLKNSRLTP*LMLLSR Trigger: TCTGGAAAGTAACATAAGCCAAGGTGTTAGCCTAGA...GTTTTTCAGACCAACAGCCAGTGCTCTTAACCACTGAGCCATCTCTCCAGACCC 47% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000058643.4 |
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| CDS-3UTR CCA 90 bp | AAGAGCACTGGCTGTTGGTCTGAAAAACTCGGGTTCAGTTCCCAGCATCCACATCTTTGGAATCTTCAATaGTGGAAGTCTTGTGCTGAG | + |
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Preference number: 4 (lower is better) Translates to: KSTGCWSEKLGFSSQHPHLWNLQ*WKSCAE Trigger: CTCAGCACAAGACTTCCACCATTGAAGATTCCAAAG...ATGTGGATGCTGGGAACTGAACCCGAGTTTTTCAGACCAACAGCCAGTGCTCTT 47% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000058643.4 |
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| CDS-3UTR GCA 90 bp | ATCACCTACATATACAAAATACAAGTGTGTTGTCAGTTTCCCTCGTATGGGTCTGCCTGTGCCTGTGCCTaGACTGATCTTAAGGCCAAG | + |
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Preference number: 4 (lower is better) Translates to: ITYIYKIQVCCQFPSYGSACACA*TDLKAK Trigger: CTTGGCCTTAAGATCAGTGCAGGCACAGGCACAGGC...AGACCCATACGAGGGAAACTGACAACACACTTGTATTTTGTATATGTAGGTGAT 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000058643.4 |
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| CDS-3UTR CCA 90 bp | CAATCACCTACATATACAAAATACAAGTGTGTTGTCAGTTTCCCTCGTATGGGTTGGGAGCCTTGCTCCTaGAGAGTGGACAGTCTTCTC | + |
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Preference number: 4 (lower is better) Translates to: QSPTYTKYKCVVSFPRMGWEPCS*RVDSLL Trigger: GAGAAGACTGTCCACTCTCCAGGAGCAAGGCTCCCA...ACCCATACGAGGGAAACTGACAACACACTTGTATTTTGTATATGTAGGTGATTG 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000058643.4 |
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| CDS-3UTR GCA 90 bp | GTATACATAGTGACTTCAGGAGACCTAGAGCTACATAGTGAGACCCTGTCTTCATATCCAGCTGTTCTATaGCCATCTTCTTGCCAATCA | + |
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Preference number: 4 (lower is better) Translates to: VYIVTSGDLELHSETLSSYPAVL*PSSCQS Trigger: TGATTGGCAAGAAGATGGGCATAGAACAGCTGGATA...TGAAGACAGGGTCTCACTATGTAGCTCTAGGTCTCCTGAAGTCACTATGTATAC 43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000058643.4 |
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| CDS-3UTR CCA 90 bp | CAATCACCTACATATACAAAATACAAGTGTGTTGTCAGTTTCCCTCGTATGGGTCCTGGTCCCCAACTTTaGGAGTCACCCTGTGTTTTT | + |
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Preference number: 4 (lower is better) Translates to: QSPTYTKYKCVVSFPRMGPGPQL*ESPCVF Trigger: AAAAACACAGGGTGACTCCCAAAGTTGGGGACCAGG...ACCCATACGAGGGAAACTGACAACACACTTGTATTTTGTATATGTAGGTGATTG 43% GC, longest homopolymer 5 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000058643.4 |
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| 3UTR CAA 72 bp | TACAGCAATCACCTACATATACAAAATACAAGTGTGTaGTCAGTTTCCCTCGTATGGGTCTGGAGAGATGGC | + |
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Preference number: 4 (lower is better) Translates to: YSNHLHIQNTSV*SVSLVWVWRDG Trigger: GCCATCTCTCCAGACCCATACGAGGGAAACTGACAACACACTTGTATTTTGTATATGTAGGTGATTGCTGTA 43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000058643.4 |
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| CDS-3UTR TCA 90 bp | ATCACCTACATATACAAAATACAAGTGTGTTGTCAGTTTCCCTCGTATGGGTCTTTTGTCCCAGCTAAGTaGGCAAAAGCCACTGTCTTC | + |
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Preference number: 4 (lower is better) Translates to: ITYIYKIQVCCQFPSYGSFVPAK*AKATVF Trigger: GAAGACAGTGGCTTTTGCTCACTTAGCTGGGACAAA...AGACCCATACGAGGGAAACTGACAACACACTTGTATTTTGTATATGTAGGTGAT 42% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 1 transcripts: ENSMUST00000058643.4 |
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| CDS-3UTR GCA 90 bp | CAATCACCTACATATACAAAATACAAGTGTGTTGTCAGTTTCCCTCGTATGGGTCTTGGAGTTTCAGGATaGTCACAGGTTAGCATAGGC | + |
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Preference number: 4 (lower is better) Translates to: QSPTYTKYKCVVSFPRMGLGVSG*SQVSIG Trigger: GCCTATGCTAACCTGTGAGCATCCTGAAACTCCAAG...ACCCATACGAGGGAAACTGACAACACACTTGTATTTTGTATATGTAGGTGATTG 42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000058643.4 |
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| CDS-3UTR GCA 90 bp | ATCACCTACATATACAAAATACAAGTGTGTTGTCAGTTTCCCTCGTATGGGTCTTTAGGATGGACCGTCTaGATTTCATCCTCTGACTGG | + |
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Preference number: 4 (lower is better) Translates to: ITYIYKIQVCCQFPSYGSLGWTV*ISSSDW Trigger: CCAGTCAGAGGATGAAATGCAGACGGTCCATCCTAA...AGACCCATACGAGGGAAACTGACAACACACTTGTATTTTGTATATGTAGGTGAT 42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000058643.4 |
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| CDS-3UTR TCA 90 bp | TATAACAGAGCTCACTCATTCCCAAATCCCTCTTGGAAAAAGGCACATTACAAATTTGCCTTTTTATCCTaGGCCACAATTTCACGCCAG | + |
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Preference number: 4 (lower is better) Translates to: YNRAHSFPNPSWKKAHYKFAFLS*ATISRQ Trigger: CTGGCGTGAAATTGTGGCTCAGGATAAAAAGGCAAA...TTTGTAATGTGCCTTTTTCCAAGAGGGATTTGGGAATGAGTGAGCTCTGTTATA 41% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt. Matches the following 1 transcripts: ENSMUST00000058643.4 |
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| CDS-3UTR CCA 90 bp | ATCACCTACATATACAAAATACAAGTGTGTTGTCAGTTTCCCTCGTATGGGTCTGAATCAGAGTTAGGATaGACCGTCTGCATTTCATCC | + |
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Preference number: 4 (lower is better) Translates to: ITYIYKIQVCCQFPSYGSESELG*TVCISS Trigger: GGATGAAATGCAGACGGTCCATCCTAACTCTGATTC...AGACCCATACGAGGGAAACTGACAACACACTTGTATTTTGTATATGTAGGTGAT 41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000058643.4 |
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| CDS-3UTR TCA 90 bp | ATCACCTACATATACAAAATACAAGTGTGTTGTCAGTTTCCCTCGTATGGGTCTTTGCTCTCAGCTGTATaGTATAAAGTTTCCTCCTCC | + |
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Preference number: 4 (lower is better) Translates to: ITYIYKIQVCCQFPSYGSLLSAV*YKVSSS Trigger: GGAGGAGGAAACTTTATATCATACAGCTGAGAGCAA...AGACCCATACGAGGGAAACTGACAACACACTTGTATTTTGTATATGTAGGTGAT 40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000058643.4 |
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| CDS-3UTR TCA 90 bp | ATCACCTACATATACAAAATACAAGTGTGTTGTCAGTTTCCCTCGTATGGGTCTACAGACTTCATTATTTaGCTGGGAGATACTGCAGAA | + |
|
Preference number: 4 (lower is better) Translates to: ITYIYKIQVCCQFPSYGSTDFII*LGDTAE Trigger: TTCTGCAGTATCTCCCAGTCAAATAATGAAGTCTGT...AGACCCATACGAGGGAAACTGACAACACACTTGTATTTTGTATATGTAGGTGAT 39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000058643.4 |
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| CDS-3UTR CCA 90 bp | CAATCACCTACATATACAAAATACAAGTGTGTTGTCAGTTTCCCTCGTATGGGTTTGAGTTCTGACTGTTaGAAACCACATCCTCTGTTT | + |
|
Preference number: 4 (lower is better) Translates to: QSPTYTKYKCVVSFPRMGLSSDC*KPHPLF Trigger: AAACAGAGGATGTGGTTTCCAACAGTCAGAACTCAA...ACCCATACGAGGGAAACTGACAACACACTTGTATTTTGTATATGTAGGTGATTG 39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000058643.4 |
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| CDS-3UTR CAA 90 bp | CCCAGCTCAGGAGGCAGGTGGACTTCTGTGTGTTCAAGGCCAGCCTGGTATACAGTACTTAGCAGGGGATaGGCACCTCGGGCAAGGCTT | + |
|
Preference number: 5 (lower is better) Translates to: PSSGGRWTSVCSRPAWYTVLSRG*APRARL Trigger: AAGCCTTGCCCGAGGTGCCAATCCCCTGCTAAGTAC...TGTATACCAGGCTGGCCTTGAACACACAGAAGTCCACCTGCCTCCTGAGCTGGG 58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000058643.4 |
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| CDS-3UTR CAA 90 bp | CCCAGCTCAGGAGGCAGGTGGACTTCTGTGTGTTCAAGGCCAGCCTGGTATACATGCTACCTCTCGCCTTaGCTGACCCTCTTCTACAGT | + |
|
Preference number: 5 (lower is better) Translates to: PSSGGRWTSVCSRPAWYTCYLSP*LTLFYS Trigger: ACTGTAGAAGAGGGTCAGCAAAGGCGAGAGGTAGCA...TGTATACCAGGCTGGCCTTGAACACACAGAAGTCCACCTGCCTCCTGAGCTGGG 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000058643.4 |
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| CDS TCA 90 bp | TTGGGCACTCCCTGGGAGAACATCTTTGCTACCTCTCGCCTTTGCTaGCCCTCTTCTACAGTCTTCAGACCCGTGATAAGCGCACAGACA | + |
|
Preference number: 5 (lower is better) Translates to: LGTPWENIFATSRLC*PSSTVFRPVISAQT Trigger: TGTCTGTGCGCTTATCACGGGTCTGAAGACTGTAGAAGAGGGTCAGCAAAGGCGAGAGGTAGCAAAGATGTTCTCCCAGGGAGTGCCCAA 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000058643.4 |
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| CDS CCA 90 bp | CCTGAATCAGAGTTAGGATGGACCGTCTGCATTTCATCCTCTGACTaGGAGCCTTGCTCCTGGAGAGTGGACAGTCTTCTCAACCTCCCA | + |
|
Preference number: 5 (lower is better) Translates to: PESELGWTVCISSSD*EPCSWRVDSLLNLP Trigger: TGGGAGGTTGAGAAGACTGTCCACTCTCCAGGAGCAAGGCTCCCAGTCAGAGGATGAAATGCAGACGGTCCATCCTAACTCTGATTCAGG 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000058643.4 |
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| CDS CCA 90 bp | GGATGGACCGTCTGCATTTCATCCTCTGACTGGGAGCCTTGCTCCTaGAGAGTGGACAGTCTTCTCAACCTCCCAAAATGCTTTGGCTTT | + |
|
Preference number: 5 (lower is better) Translates to: GWTVCISSSDWEPCS*RVDSLLNLPKCFGF Trigger: AAAGCCAAAGCATTTTGGGAGGTTGAGAAGACTGTCCACTCTCCAGGAGCAAGGCTCCCAGTCAGAGGATGAAATGCAGACGGTCCATCC 52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000058643.4 |
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| CDS CCA 90 bp | TGCCCATCTTCTTGCCAATCAGTCCTGCGAGAACACGCTGCAGTCTaGCAATTTTCCCCTCGTCCCTGTCCTCAAAGAATTCCTGGTCAT | + |
|
Preference number: 5 (lower is better) Translates to: CPSSCQSVLREHAAV*QFSPRPCPQRIPGH Trigger: ATGACCAGGAATTCTTTGAGGACAGGGACGAGGGGAAAATTGCCAGACTGCAGCGTGTTCTCGCAGGACTGATTGGCAAGAAGATGGGCA 52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000058643.4 |
||
| CDS-3UTR CAA 90 bp | GGGTCTGGAGAGATGGCTCAGTGGTTAAGAGCACTGGCTGTTGGTCTGAAAAACACCTGGTCCCCAACTTaGGGAGTCACCCTGTGTTTT | + |
|
Preference number: 5 (lower is better) Translates to: GSGEMAQWLRALAVGLKNTWSPT*GVTLCF Trigger: AAAACACAGGGTGACTCCCAAAGTTGGGGACCAGGT...GTTTTTCAGACCAACAGCCAGTGCTCTTAACCACTGAGCCATCTCTCCAGACCC 52% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000058643.4 |
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| CDS-3UTR CAA 90 bp | CAAGTGTGTTGTCAGTTTCCCTCGTATGGGTCTGGAGAGATGGCTCAGTGGTTACTTCTCCTCAGAGCCTaGCAGACTCTCCAAGACACC | + |
|
Preference number: 5 (lower is better) Translates to: QVCCQFPSYGSGEMAQWLLLLRA*QTLQDT Trigger: GGTGTCTTGGAGAGTCTGCAAGGCTCTGAGGAGAAG...TAACCACTGAGCCATCTCTCCAGACCCATACGAGGGAAACTGACAACACACTTG 52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000058643.4 |
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| CDS GCA 90 bp | GAGTTAGGATGGACCGTCTGCATTTCATCCTCTGACTGGGAGCCTTaGTCCTGGAGAGTGGACAGTCTTCTCAACCTCCCAAAATGCTTT | + |
|
Preference number: 5 (lower is better) Translates to: ELGWTVCISSSDWEP*SWRVDSLLNLPKCF Trigger: AAAGCATTTTGGGAGGTTGAGAAGACTGTCCACTCTCCAGGAGCAAGGCTCCCAGTCAGAGGATGAAATGCAGACGGTCCATCCTAACTC 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000058643.4 |
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| CDS GCA 90 bp | TGTTCTATGCCCATCTTCTTGCCAATCAGTCCTGCGAGAACACGCTaGAGTCTGGCAATTTTCCCCTCGTCCCTGTCCTCAAAGAATTCC | + |
|
Preference number: 5 (lower is better) Translates to: CSMPIFLPISPARTR*SLAIFPSSLSSKNS Trigger: GGAATTCTTTGAGGACAGGGACGAGGGGAAAATTGCCAGACTGCAGCGTGTTCTCGCAGGACTGATTGGCAAGAAGATGGGCATAGAACA 51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000058643.4 |
||
| CDS-3UTR CAA 90 bp | CAAGTGTGTTGTCAGTTTCCCTCGTATGGGTCTGGAGAGATGGCTCAGTGGTTACATCTGCTCCATAGGTaGTTTGGCTACCACAGGAGC | + |
|
Preference number: 5 (lower is better) Translates to: QVCCQFPSYGSGEMAQWLHLLHR*FGYHRS Trigger: GCTCCTGTGGTAGCCAAACAACCTATGGAGCAGATG...TAACCACTGAGCCATCTCTCCAGACCCATACGAGGGAAACTGACAACACACTTG 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000058643.4 |
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| CDS-3UTR CAA 90 bp | GGGTCTGGAGAGATGGCTCAGTGGTTAAGAGCACTGGCTGTTGGTCTGAAAAACTCTATGCCCATCTTCTaGCCAATCAGTCCTGCGAGA | + |
|
Preference number: 5 (lower is better) Translates to: GSGEMAQWLRALAVGLKNSMPIF*PISPAR Trigger: TCTCGCAGGACTGATTGGCAAGAAGATGGGCATAGA...GTTTTTCAGACCAACAGCCAGTGCTCTTAACCACTGAGCCATCTCTCCAGACCC 51% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000058643.4 |
||
| CDS-3UTR CAA 90 bp | CCCAGCTCAGGAGGCAGGTGGACTTCTGTGTGTTCAAGGCCAGCCTGGTATACAAATCATTGCCTTCAATaGGAGACAGACATTCCACTT | + |
|
Preference number: 5 (lower is better) Translates to: PSSGGRWTSVCSRPAWYTNHCLQ*ETDIPL Trigger: AAGTGGAATGTCTGTCTCCAATTGAAGGCAATGATT...TGTATACCAGGCTGGCCTTGAACACACAGAAGTCCACCTGCCTCCTGAGCTGGG 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000058643.4 |
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| CDS TCA 90 bp | GAACACGTAACACAGCGGCCCCCTGAGCACTTGCTCTCAGCTGTATaGTATAAAGTTTCCTCCTCCTGTTTGCCTTTTTATCCTGAGCCA | + |
|
Preference number: 5 (lower is better) Translates to: EHVTQRPPEHLLSAV*YKVSSSCLPFYPEP Trigger: TGGCTCAGGATAAAAAGGCAAACAGGAGGAGGAAACTTTATATCATACAGCTGAGAGCAAGTGCTCAGGGGGCCGCTGTGTTACGTGTTC 49% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt. Matches the following 1 transcripts: ENSMUST00000058643.4 |
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| CDS GCA 90 bp | ACTGTAATTCGGTCAGGATATCCAGCTGTTCTATGCCCATCTTCTTaGCAATCAGTCCTGCGAGAACACGCTGCAGTCTGGCAATTTTCC | + |
|
Preference number: 5 (lower is better) Translates to: TVIRSGYPAVLCPSS*QSVLREHAAVWQFS Trigger: GGAAAATTGCCAGACTGCAGCGTGTTCTCGCAGGACTGATTGGCAAGAAGATGGGCATAGAACAGCTGGATATCCTGACCGAATTACAGT 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000058643.4 |
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| CDS-3UTR CAA 90 bp | GTATACATAGTGACTTCAGGAGACCTAGAGCTACATAGTGAGACCCTGTCTTCACGTTTTAAGTTCCGCTaGCTTTGGGCACTCCCTGGG | + |
|
Preference number: 5 (lower is better) Translates to: VYIVTSGDLELHSETLSSRFKFR*LWALPG Trigger: CCCAGGGAGTGCCCAAAGCAAGCGGAACTTAAAACG...TGAAGACAGGGTCTCACTATGTAGCTCTAGGTCTCCTGAAGTCACTATGTATAC 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000058643.4 |
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| CDS-3UTR CAA 90 bp | TCGTATGGGTCTGGAGAGATGGCTCAGTGGTTAAGAGCACTGGCTGTTGGTCTGAGTCACCCTGTGTTTTaGAAGCAGTTCTTGAAAAGA | + |
|
Preference number: 5 (lower is better) Translates to: SYGSGEMAQWLRALAVGLSHPVF*KQFLKR Trigger: TCTTTTCAAGAACTGCTTCAAAAACACAGGGTGACT...CAGACCAACAGCCAGTGCTCTTAACCACTGAGCCATCTCTCCAGACCCATACGA 48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000058643.4 |
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| CDS GCA 90 bp | TCAAGTTTCTATACTGTAATTCGGTCAGGATATCCAGCTGTTCTATaGCCATCTTCTTGCCAATCAGTCCTGCGAGAACACGCTGCAGTC | + |
|
Preference number: 5 (lower is better) Translates to: SSFYTVIRSGYPAVL*PSSCQSVLREHAAV Trigger: GACTGCAGCGTGTTCTCGCAGGACTGATTGGCAAGAAGATGGGCATAGAACAGCTGGATATCCTGACCGAATTACAGTATAGAAACTTGA 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000058643.4 |
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| CDS GCA 90 bp | TTTTGCTATGAGACTACTTACTGGAGTTACAGATGTAGTCACATCTaGTCCATAGGTTGTTTGGCTACCACAGGAGCCCAGAAGTTCAGG | + |
|
Preference number: 5 (lower is better) Translates to: FCYETTYWSYRCSHI*SIGCLATTGAQKFR Trigger: CCTGAACTTCTGGGCTCCTGTGGTAGCCAAACAACCTATGGAGCAGATGTGACTACATCTGTAACTCCAGTAAGTAGTCTCATAGCAAAA 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000058643.4 |
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| CDS TCA 90 bp | TGTTTGCCTTTTTATCCTGAGCCACAATTTCACGCCAGTTTCTGCTaGCGTTCCAAGCACTGTATAAACTCTCCGAAGTCAAGGACTCTA | + |
|
Preference number: 5 (lower is better) Translates to: CLPFYPEPQFHASFC*RSKHCINSPKSRTL Trigger: TAGAGTCCTTGACTTCGGAGAGTTTATACAGTGCTTGGAACGTCAGCAGAAACTGGCGTGAAATTGTGGCTCAGGATAAAAAGGCAAACA 44% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000058643.4 |
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| CDS CCA 90 bp | TTAGGGACACAGACTTCATTATTTGACTGGGAGATACTGCAGAATTaGGGGAACCTAAACTTGGAGTTTCAGGATGCTCACAGGTTAGCA | + |
|
Preference number: 5 (lower is better) Translates to: LGTQTSLFDWEILQN*GNLNLEFQDAHRLA Trigger: TGCTAACCTGTGAGCATCCTGAAACTCCAAGTTTAGGTTCCCCCAATTCTGCAGTATCTCCCAGTCAAATAATGAAGTCTGTGTCCCTAA 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000058643.4 ENSMUST00000227793.2 |
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| CDS-3UTR CAA 90 bp | AAGAGCACTGGCTGTTGGTCTGAAAAACTCGGGTTCAGTTCCCAGCATCCACATGAGAAAAATGTAACCTaGAGTTCTGACTGTTGGAAA | + |
|
Preference number: 5 (lower is better) Translates to: KSTGCWSEKLGFSSQHPHEKNVT*SSDCWK Trigger: TTTCCAACAGTCAGAACTCAAGGTTACATTTTTCTC...ATGTGGATGCTGGGAACTGAACCCGAGTTTTTCAGACCAACAGCCAGTGCTCTT 44% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt. Matches the following 1 transcripts: ENSMUST00000058643.4 |
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| CDS-3UTR CAA 90 bp | GTATACATAGTGACTTCAGGAGACCTAGAGCTACATAGTGAGACCCTGTCTTCATTGAAAAGAGCCCTCTaGGTCAGAGAGGAAATCTTC | + |
|
Preference number: 5 (lower is better) Translates to: VYIVTSGDLELHSETLSSLKRAL*VREEIF Trigger: GAAGATTTCCTCTCTGACCAAGAGGGCTCTTTTCAA...TGAAGACAGGGTCTCACTATGTAGCTCTAGGTCTCCTGAAGTCACTATGTATAC 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000058643.4 |
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| CDS-3UTR CAA 90 bp | ATCACCTACATATACAAAATACAAGTGTGTTGTCAGTTTCCCTCGTATGGGTCTTGGGGGAACCTAAACTaGGAGTTTCAGGATGCTCAC | + |
|
Preference number: 5 (lower is better) Translates to: ITYIYKIQVCCQFPSYGSWGNLN*EFQDAH Trigger: GTGAGCATCCTGAAACTCCAAGTTTAGGTTCCCCCA...AGACCCATACGAGGGAAACTGACAACACACTTGTATTTTGTATATGTAGGTGAT 43% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000058643.4 |
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| CDS-3UTR CAA 90 bp | GTATACATAGTGACTTCAGGAGACCTAGAGCTACATAGTGAGACCCTGTCTTCAACTAATGGGCTAAAGTaGTCTTCCTTTGGGAAACCT | + |
|
Preference number: 5 (lower is better) Translates to: VYIVTSGDLELHSETLSSTNGLK*SSFGKP Trigger: AGGTTTCCCAAAGGAAGACAACTTTAGCCCATTAGT...TGAAGACAGGGTCTCACTATGTAGCTCTAGGTCTCCTGAAGTCACTATGTATAC 43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000058643.4 |
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| CDS-3UTR CAA 90 bp | GTATACATAGTGACTTCAGGAGACCTAGAGCTACATAGTGAGACCCTGTCTTCATCAAACAAGCCACAGTaGTCTTTGGAATCTTCAATG | + |
|
Preference number: 5 (lower is better) Translates to: VYIVTSGDLELHSETLSSSNKPQ*SLESSM Trigger: CATTGAAGATTCCAAAGACAACTGTGGCTTGTTTGA...TGAAGACAGGGTCTCACTATGTAGCTCTAGGTCTCCTGAAGTCACTATGTATAC 42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000058643.4 |
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| CDS-3UTR CAA 90 bp | TATAACAGAGCTCACTCATTCCCAAATCCCTCTTGGAAAAAGGCACATTACAAAGTTTCCTCCTCCTGTTaGCCTTTTTATCCTGAGCCA | + |
|
Preference number: 5 (lower is better) Translates to: YNRAHSFPNPSWKKAHYKVSSSC*PFYPEP Trigger: TGGCTCAGGATAAAAAGGCAAACAGGAGGAGGAAAC...TTTGTAATGTGCCTTTTTCCAAGAGGGATTTGGGAATGAGTGAGCTCTGTTATA 42% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt. Matches the following 1 transcripts: ENSMUST00000058643.4 |
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| CDS GCA 90 bp | TATAAACTCTCCGAAGTCAAGGACTCTAAAACCATAGCTAGGATGTaGTTCAAGTTTCTATACTGTAATTCGGTCAGGATATCCAGCTGT | + |
|
Preference number: 5 (lower is better) Translates to: YKLSEVKDSKTIARM*FKFLYCNSVRISSC Trigger: ACAGCTGGATATCCTGACCGAATTACAGTATAGAAACTTGAAGCACATCCTAGCTATGGTTTTAGAGTCCTTGACTTCGGAGAGTTTATA 40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000058643.4 |
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| CDS-3UTR CAA 90 bp | TATAACAGAGCTCACTCATTCCCAAATCCCTCTTGGAAAAAGGCACATTACAAAAAGCCACAGTTGTCTTaGGAATCTTCAATGGTGGAA | + |
|
Preference number: 5 (lower is better) Translates to: YNRAHSFPNPSWKKAHYKKPQLS*ESSMVE Trigger: TTCCACCATTGAAGATTCCAAAGACAACTGTGGCTT...TTTGTAATGTGCCTTTTTCCAAGAGGGATTTGGGAATGAGTGAGCTCTGTTATA 40% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt. Matches the following 1 transcripts: ENSMUST00000058643.4 |
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| CDS-3UTR CAA 90 bp | TATAACAGAGCTCACTCATTCCCAAATCCCTCTTGGAAAAAGGCACATTACAAAAGGAAATCTTCTGATTaGTCCCAGCTAAGTGAGCAA | + |
|
Preference number: 5 (lower is better) Translates to: YNRAHSFPNPSWKKAHYKRKSSD*SQLSEQ Trigger: TTGCTCACTTAGCTGGGACAAATCAGAAGATTTCCT...TTTGTAATGTGCCTTTTTCCAAGAGGGATTTGGGAATGAGTGAGCTCTGTTATA 40% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000058643.4 |
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| CDS CCA 90 bp | AGTTTGGTTTCCATTAAATTTGATTTTTGCTATGAGACTACTTACTaGAGTTACAGATGTAGTCACATCTGCTCCATAGGTTGTTTGGCT | + |
|
Preference number: 5 (lower is better) Translates to: SLVSIKFDFCYETTY*SYRCSHICSIGCLA Trigger: AGCCAAACAACCTATGGAGCAGATGTGACTACATCTGTAACTCCAGTAAGTAGTCTCATAGCAAAAATCAAATTTAATGGAAACCAAACT 37% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000058643.4 |
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| CDS CCA 90 bp | GGTGTAAAAAGACTGTCTCTCACCTCTCCTGAAGAATCAAGAGTTTaGTTTCCATTAAATTTGATTTTTGCTATGAGACTACTTACTGGA | + |
|
Preference number: 5 (lower is better) Translates to: GVKRLSLTSPEESRV*FPLNLIFAMRLLTG Trigger: TCCAGTAAGTAGTCTCATAGCAAAAATCAAATTTAATGGAAACCAAACTCTTGATTCTTCAGGAGAGGTGAGAGACAGTCTTTTTACACC 37% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt. Matches the following 1 transcripts: ENSMUST00000058643.4 |
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| CDS GCA 72 bp | GGAACCTGCTCACCACTGGGTGCCTGTGCCTGTGCCTaGACTGATCTTAAGGCCAAGCGACTCAGAAGGCAG | + |
|
Preference number: 6 (lower is better) Translates to: GTCSPLGACACA*TDLKAKRLRRQ Trigger: CTGCCTTCTGAGTCGCTTGGCCTTAAGATCAGTGCAGGCACAGGCACAGGCACCCAGTGGTGAGCAGGTTCC 60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000058643.4 |
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| CDS GCA 72 bp | TGGACCGTCTGCATTTCATCCTCTGACTGGGAGCCTTaGTCCTGGAGAGTGGACAGTCTTCTCAACCTCCCA | + |
|
Preference number: 6 (lower is better) Translates to: WTVCISSSDWEP*SWRVDSLLNLP Trigger: TGGGAGGTTGAGAAGACTGTCCACTCTCCAGGAGCAAGGCTCCCAGTCAGAGGATGAAATGCAGACGGTCCA 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000058643.4 |
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| CDS GCA 72 bp | CCCATCTTCTTGCCAATCAGTCCTGCGAGAACACGCTaGAGTCTGGCAATTTTCCCCTCGTCCCTGTCCTCA | + |
|
Preference number: 6 (lower is better) Translates to: PIFLPISPARTR*SLAIFPSSLSS Trigger: TGAGGACAGGGACGAGGGGAAAATTGCCAGACTGCAGCGTGTTCTCGCAGGACTGATTGGCAAGAAGATGGG 56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000058643.4 |
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| CDS GCA 72 bp | TCCGCTTGCTTTGGGCACTCCCTGGGAGAACATCTTTaGTACCTCTCGCCTTTGCTGACCCTCTTCTACAGT | + |
|
Preference number: 6 (lower is better) Translates to: SACFGHSLGEHL*YLSPLLTLFYS Trigger: ACTGTAGAAGAGGGTCAGCAAAGGCGAGAGGTAGCAAAGATGTTCTCCCAGGGAGTGCCCAAAGCAAGCGGA 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000058643.4 |
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| CDS CCA 72 bp | GAGTTAGGATGGACCGTCTGCATTTCATCCTCTGACTaGGAGCCTTGCTCCTGGAGAGTGGACAGTCTTCTC | + |
|
Preference number: 6 (lower is better) Translates to: ELGWTVCISSSD*EPCSWRVDSLL Trigger: GAGAAGACTGTCCACTCTCCAGGAGCAAGGCTCCCAGTCAGAGGATGAAATGCAGACGGTCCATCCTAACTC 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000058643.4 |
||
| CDS CAA 72 bp | TTCCGCTTGCTTTGGGCACTCCCTGGGAGAACATCTTaGCTACCTCTCGCCTTTGCTGACCCTCTTCTACAG | + |
|
Preference number: 6 (lower is better) Translates to: FRLLWALPGRTS*LPLAFADPLLQ Trigger: CTGTAGAAGAGGGTCAGCAAAGGCGAGAGGTAGCAAAGATGTTCTCCCAGGGAGTGCCCAAAGCAAGCGGAA 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000058643.4 |
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| CDS CAA 90 bp | TGCTTTGGGCACTCCCTGGGAGAACATCTTTGCTACCTCTCGCCTTaGCTGACCCTCTTCTACAGTCTTCAGACCCGTGATAAGCGCACA | + |
|
Preference number: 6 (lower is better) Translates to: CFGHSLGEHLCYLSP*LTLFYSLQTRDKRT Trigger: TGTGCGCTTATCACGGGTCTGAAGACTGTAGAAGAGGGTCAGCAAAGGCGAGAGGTAGCAAAGATGTTCTCCCAGGGAGTGCCCAAAGCA 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000058643.4 |
||
| CDS GCA 72 bp | TCCAAGACACCTGAATCAGAGTTAGGATGGACCGTCTaGATTTCATCCTCTGACTGGGAGCCTTGCTCCTGG | + |
|
Preference number: 6 (lower is better) Translates to: SKTPESELGWTV*ISSSDWEPCSW Trigger: CCAGGAGCAAGGCTCCCAGTCAGAGGATGAAATGCAGACGGTCCATCCTAACTCTGATTCAGGTGTCTTGGA 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000058643.4 |
||
| CDS GCA 72 bp | CAGCTGTTCTATGCCCATCTTCTTGCCAATCAGTCCTaGGAGAACACGCTGCAGTCTGGCAATTTTCCCCTC | + |
|
Preference number: 6 (lower is better) Translates to: QLFYAHLLANQS*ENTLQSGNFPL Trigger: GAGGGGAAAATTGCCAGACTGCAGCGTGTTCTCGCAGGACTGATTGGCAAGAAGATGGGCATAGAACAGCTG 53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000058643.4 |
||
| CDS CCA 72 bp | GTCTGCATTTCATCCTCTGACTGGGAGCCTTGCTCCTaGAGAGTGGACAGTCTTCTCAACCTCCCAAAATGC | + |
|
Preference number: 6 (lower is better) Translates to: VCISSSDWEPCS*RVDSLLNLPKC Trigger: GCATTTTGGGAGGTTGAGAAGACTGTCCACTCTCCAGGAGCAAGGCTCCCAGTCAGAGGATGAAATGCAGAC 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000058643.4 |
||
| CDS CAA 72 bp | TCGGTCAGGATATCCAGCTGTTCTATGCCCATCTTCTaGCCAATCAGTCCTGCGAGAACACGCTGCAGTCTG | + |
|
Preference number: 6 (lower is better) Translates to: SVRISSCSMPIF*PISPARTRCSL Trigger: CAGACTGCAGCGTGTTCTCGCAGGACTGATTGGCAAGAAGATGGGCATAGAACAGCTGGATATCCTGACCGA 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000058643.4 |
||
| CDS CAA 72 bp | CACTCCCTGGGAGAACATCTTTGCTACCTCTCGCCTTaGCTGACCCTCTTCTACAGTCTTCAGACCCGTGAT | + |
|
Preference number: 6 (lower is better) Translates to: HSLGEHLCYLSP*LTLFYSLQTRD Trigger: ATCACGGGTCTGAAGACTGTAGAAGAGGGTCAGCAAAGGCGAGAGGTAGCAAAGATGTTCTCCCAGGGAGTG 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000058643.4 |
||
| CDS CCA 72 bp | TGCAGACTCTCCAAGACACCTGAATCAGAGTTAGGATaGACCGTCTGCATTTCATCCTCTGACTGGGAGCCT | + |
|
Preference number: 6 (lower is better) Translates to: CRLSKTPESELG*TVCISSSDWEP Trigger: AGGCTCCCAGTCAGAGGATGAAATGCAGACGGTCCATCCTAACTCTGATTCAGGTGTCTTGGAGAGTCTGCA 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000058643.4 |
||
| CDS TCA 72 bp | CTTCTCCTCAGAGCCTTGCAGACTCTCCAAGACACCTaGATCAGAGTTAGGATGGACCGTCTGCATTTCATC | + |
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Preference number: 6 (lower is better) Translates to: LLLRALQTLQDT*IRVRMDRLHFI Trigger: GATGAAATGCAGACGGTCCATCCTAACTCTGATTCAGGTGTCTTGGAGAGTCTGCAAGGCTCTGAGGAGAAG 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000058643.4 |
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| CDS GCA 72 bp | CTTAAAGCCAAGTTCCCACGCTTCTCCTCAGAGCCTTaGAGACTCTCCAAGACACCTGAATCAGAGTTAGGA | + |
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Preference number: 6 (lower is better) Translates to: LKAKFPRFSSEP*RLSKTPESELG Trigger: TCCTAACTCTGATTCAGGTGTCTTGGAGAGTCTGCAAGGCTCTGAGGAGAAGCGTGGGAACTTGGCTTTAAG 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000058643.4 |
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| CDS GCA 72 bp | GAGACTACTTACTGGAGTTACAGATGTAGTCACATCTaGTCCATAGGTTGTTTGGCTACCACAGGAGCCCAG | + |
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Preference number: 6 (lower is better) Translates to: ETTYWSYRCSHI*SIGCLATTGAQ Trigger: CTGGGCTCCTGTGGTAGCCAAACAACCTATGGAGCAGATGTGACTACATCTGTAACTCCAGTAAGTAGTCTC 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000058643.4 |
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| CDS CAA 90 bp | TACTGTAATTCGGTCAGGATATCCAGCTGTTCTATGCCCATCTTCTaGCCAATCAGTCCTGCGAGAACACGCTGCAGTCTGGCAATTTTC | + |
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Preference number: 6 (lower is better) Translates to: YCNSVRISSCSMPIF*PISPARTRCSLAIF Trigger: GAAAATTGCCAGACTGCAGCGTGTTCTCGCAGGACTGATTGGCAAGAAGATGGGCATAGAACAGCTGGATATCCTGACCGAATTACAGTA 48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000058643.4 |
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| CDS TCA 72 bp | ACACAGCGGCCCCCTGAGCACTTGCTCTCAGCTGTATaGTATAAAGTTTCCTCCTCCTGTTTGCCTTTTTAT | + |
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Preference number: 6 (lower is better) Translates to: TQRPPEHLLSAV*YKVSSSCLPFY Trigger: ATAAAAAGGCAAACAGGAGGAGGAAACTTTATATCATACAGCTGAGAGCAAGTGCTCAGGGGGCCGCTGTGT 47% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt. Matches the following 1 transcripts: ENSMUST00000058643.4 |
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| CDS GCA 72 bp | TATACTGTAATTCGGTCAGGATATCCAGCTGTTCTATaGCCATCTTCTTGCCAATCAGTCCTGCGAGAACAC | + |
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Preference number: 6 (lower is better) Translates to: YTVIRSGYPAVL*PSSCQSVLREH Trigger: GTGTTCTCGCAGGACTGATTGGCAAGAAGATGGGCATAGAACAGCTGGATATCCTGACCGAATTACAGTATA 46% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000058643.4 |
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| CDS TCA 72 bp | TTTTATCCTGAGCCACAATTTCACGCCAGTTTCTGCTaGCGTTCCAAGCACTGTATAAACTCTCCGAAGTCA | + |
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Preference number: 6 (lower is better) Translates to: FYPEPQFHASFC*RSKHCINSPKS Trigger: TGACTTCGGAGAGTTTATACAGTGCTTGGAACGTCAGCAGAAACTGGCGTGAAATTGTGGCTCAGGATAAAA 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000058643.4 |
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| CDS CAA 72 bp | TCTGTTTTTATCGTGCTGGTAACTAATGGGCTAAAGTaGTCTTCCTTTGGGAAACCTGAAGTGCTACCTGGC | + |
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Preference number: 6 (lower is better) Translates to: SVFIVLVTNGLK*SSFGKPEVLPG Trigger: GCCAGGTAGCACTTCAGGTTTCCCAAAGGAAGACAACTTTAGCCCATTAGTTACCAGCACGATAAAAACAGA 44% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENSMUST00000058643.4 ENSMUST00000227793.2 |
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| CDS CAA 72 bp | AACTTTGGGAGTCACCCTGTGTTTTTGAAGCAGTTCTaGAAAAGAGCCCTCTTGGTCAGAGAGGAAATCTTC | + |
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Preference number: 6 (lower is better) Translates to: NFGSHPVFLKQF*KRALLVREEIF Trigger: GAAGATTTCCTCTCTGACCAAGAGGGCTCTTTTCAAGAACTGCTTCAAAAACACAGGGTGACTCCCAAAGTT 44% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000058643.4 |
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| CDS TCA 72 bp | AGGCTCTTCTTCTTTCTTATTAAGGCTGCAAGATTCTaGCAGCTCGTGATGGCCCCTATATTTAAAGGAGGA | + |
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Preference number: 6 (lower is better) Translates to: RLFFFLIKAARF*QLVMAPIFKGG Trigger: TCCTCCTTTAAATATAGGGGCCATCACGAGCTGTCAGAATCTTGCAGCCTTAATAAGAAAGAAGAAGAGCCT 43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000058643.4 ENSMUST00000227793.2 |
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| CDS TCA 72 bp | TCCTTTTCCTTCCTTAGGGACACAGACTTCATTATTTaGCTGGGAGATACTGCAGAATTGGGGGAACCTAAA | + |
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Preference number: 6 (lower is better) Translates to: SFSFLRDTDFII*LGDTAELGEPK Trigger: TTTAGGTTCCCCCAATTCTGCAGTATCTCCCAGTCAAATAATGAAGTCTGTGTCCCTAAGGAAGGAAAAGGA 43% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENSMUST00000058643.4 ENSMUST00000227793.2 |
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| CDS CCA 72 bp | TTTCCTTCCTTAGGGACACAGACTTCATTATTTGACTaGGAGATACTGCAGAATTGGGGGAACCTAAACTTG | + |
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Preference number: 6 (lower is better) Translates to: FPSLGTQTSLFD*EILQNWGNLNL Trigger: CAAGTTTAGGTTCCCCCAATTCTGCAGTATCTCCCAGTCAAATAATGAAGTCTGTGTCCCTAAGGAAGGAAA 43% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENSMUST00000058643.4 ENSMUST00000227793.2 |
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| CDS CAA 90 bp | ACCACATCCTCTGTTTTTATCGTGCTGGTAACTAATGGGCTAAAGTaGTCTTCCTTTGGGAAACCTGAAGTGCTACCTGGCAAATGTTTT | + |
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Preference number: 6 (lower is better) Translates to: TTSSVFIVLVTNGLK*SSFGKPEVLPGKCF Trigger: AAAACATTTGCCAGGTAGCACTTCAGGTTTCCCAAAGGAAGACAACTTTAGCCCATTAGTTACCAGCACGATAAAAACAGAGGATGTGGT 42% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENSMUST00000058643.4 ENSMUST00000227793.2 |
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| CDS TCA 72 bp | TCTTTCTTATTAAGGCTGCAAGATTCTGACAGCTCGTaGTGGCCCCTATATTTAAAGGAGGATGTGGAACAA | + |
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Preference number: 6 (lower is better) Translates to: SFLLRLQDSDSS*WPLYLKEDVEQ Trigger: TTGTTCCACATCCTCCTTTAAATATAGGGGCCATCACGAGCTGTCAGAATCTTGCAGCCTTAATAAGAAAGA 42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000058643.4 ENSMUST00000227793.2 |
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| CDS GCA 72 bp | TTCCTTTTGCTTTTCATAAAGAGCTCCTGCACCAACTaGAGGGCTGGAGTATTTGATAAGTCCTTAAAGCTT | + |
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Preference number: 6 (lower is better) Translates to: FLLLFIKSSCTN*RAGVFDKSLKL Trigger: AAGCTTTAAGGACTTATCAAATACTCCAGCCCTGCAGTTGGTGCAGGAGCTCTTTATGAAAAGCAAAAGGAA 42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000058643.4 |
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| CDS CCA 72 bp | GTGCTACCTGGCAAATGTTTTTCTAGGCTAACACCTTaGCTTATGTTACTTTCCAGAGATCTGCTTTGTGAA | + |
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Preference number: 6 (lower is better) Translates to: VLPGKCFSRLTP*LMLLSRDLLCE Trigger: TTCACAAAGCAGATCTCTGGAAAGTAACATAAGCCAAGGTGTTAGCCTAGAAAAACATTTGCCAGGTAGCAC 42% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENSMUST00000058643.4 ENSMUST00000227793.2 |
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| CDS CAA 72 bp | CAATGGTGGAAGTCTTGTGCTGAGAAAAATGTAACCTaGAGTTCTGACTGTTGGAAACCACATCCTCTGTTT | + |
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Preference number: 6 (lower is better) Translates to: QWWKSCAEKNVT*SSDCWKPHPLF Trigger: AAACAGAGGATGTGGTTTCCAACAGTCAGAACTCAAGGTTACATTTTTCTCAGCACAAGACTTCCACCATTG 42% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000058643.4 |
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| CDS CAA 90 bp | TGGAATCTTCAATGGTGGAAGTCTTGTGCTGAGAAAAATGTAACCTaGAGTTCTGACTGTTGGAAACCACATCCTCTGTTTTTATCGTGC | + |
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Preference number: 6 (lower is better) Translates to: WNLQWWKSCAEKNVT*SSDCWKPHPLFLSC Trigger: GCACGATAAAAACAGAGGATGTGGTTTCCAACAGTCAGAACTCAAGGTTACATTTTTCTCAGCACAAGACTTCCACCATTGAAGATTCCA 41% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt. Matches the following 1 transcripts: ENSMUST00000058643.4 |
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| CDS GCA 72 bp | TCCGAAGTCAAGGACTCTAAAACCATAGCTAGGATGTaGTTCAAGTTTCTATACTGTAATTCGGTCAGGATA | + |
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Preference number: 6 (lower is better) Translates to: SEVKDSKTIARM*FKFLYCNSVRI Trigger: TATCCTGACCGAATTACAGTATAGAAACTTGAAGCACATCCTAGCTATGGTTTTAGAGTCCTTGACTTCGGA 40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000058643.4 |
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| CDS CAA 90 bp | CTTAAACTGCTGTCACTAAAGTGTGTGATAGAATCTTTAAAATCATaGCCTTCAATTGGAGACAGACATTCCACTTCAAACAAGCCACAG | + |
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Preference number: 6 (lower is better) Translates to: LKLLSLKCVIESLKS*PSIGDRHSTSNKPQ Trigger: CTGTGGCTTGTTTGAAGTGGAATGTCTGTCTCCAATTGAAGGCAATGATTTTAAAGATTCTATCACACACTTTAGTGACAGCAGTTTAAG 38% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000058643.4 |
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| CDS TCA 72 bp | GTCTTCAGGTGTAAAAAGACTGTCTCTCACCTCTCCTaGAGAATCAAGAGTTTGGTTTCCATTAAATTTGAT | + |
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Preference number: 6 (lower is better) Translates to: VFRCKKTVSHLS*RIKSLVSIKFD Trigger: ATCAAATTTAATGGAAACCAAACTCTTGATTCTTCAGGAGAGGTGAGAGACAGTCTTTTTACACCTGAAGAC 38% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000058643.4 |
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| CDS CCA 72 bp | AGACTGTCTCTCACCTCTCCTGAAGAATCAAGAGTTTaGTTTCCATTAAATTTGATTTTTGCTATGAGACTA | + |
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Preference number: 6 (lower is better) Translates to: RLSLTSPEESRV*FPLNLIFAMRL Trigger: TAGTCTCATAGCAAAAATCAAATTTAATGGAAACCAAACTCTTGATTCTTCAGGAGAGGTGAGAGACAGTCT 36% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000058643.4 |
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| CDS CAA 72 bp | CTGTCACTAAAGTGTGTGATAGAATCTTTAAAATCATaGCCTTCAATTGGAGACAGACATTCCACTTCAAAC | + |
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Preference number: 6 (lower is better) Translates to: LSLKCVIESLKS*PSIGDRHSTSN Trigger: GTTTGAAGTGGAATGTCTGTCTCCAATTGAAGGCAATGATTTTAAAGATTCTATCACACACTTTAGTGACAG 36% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000058643.4 |
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