Pregenerated sensors for FBXO4 (Mus musculus)
Ensembl gene IDs: ENSMUSG00000022184Ensembl transcript IDs: ENSMUST00000022791.9
Found 48 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR TCA 90 bp | AGCTGTGGTAGCTGTCCAGTAGAAAGGCCTCCTCCAGAGGGGCAGTaGCAGGAGGGACAGGAAACACATACACCATGTCCTGCGGCTTCC | + |
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Preference number: 1 (lower is better) Translates to: SCGSCPVERPPPEGQ*QEGQETHTPCPAAS Trigger: GGAAGCCGCAGGACATGGTGTATGTGTTTCCTGTCCCTCCTGTCACTGCCCCTCTGGAGGAGGCCTTTCTACTGGACAGCTACCACAGCT 58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000022791.9 |
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| 3UTR GCA 72 bp | GAGTTCATTTTGTGGAAAAGTAGTAGGACTGAAACTTaGAACTCATTCATGGTAAAGTGTCAGAAACCCAGC | + |
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Preference number: 3 (lower is better) Translates to: EFILWKSSRTET*NSFMVKCQKPS Trigger: GCTGGGTTTCTGACACTTTACCATGAATGAGTTGCAAGTTTCAGTCCTACTACTTTTCCACAAAATGAACTC 40% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000022791.9 |
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| CDS-3UTR GCA 90 bp | CTGTCCAGTAGAAAGGCCTCCTCCAGAGGGGCAGTGACAGGAGGGACAGGAAACGCCGCTCAGGATGGCTaGCTCCAGGCGGCCCCAGTC | + |
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Preference number: 4 (lower is better) Translates to: LSSRKASSRGAVTGGTGNAAQDG*LQAAPV Trigger: GACTGGGGCCGCCTGGAGGCAGCCATCCTGAGCGGC...GTTTCCTGTCCCTCCTGTCACTGCCCCTCTGGAGGAGGCCTTTCTACTGGACAG 64% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000022791.9 |
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| CDS-3UTR CCA 90 bp | CTGTCCAGTAGAAAGGCCTCCTCCAGAGGGGCAGTGACAGGAGGGACAGGAAACTCCAGCCGCTCAGGATaGCTGCCTCCAGGCGGCCCC | + |
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Preference number: 4 (lower is better) Translates to: LSSRKASSRGAVTGGTGNSSRSG*LPPGGP Trigger: GGGGCCGCCTGGAGGCAGCCATCCTGAGCGGCTGGA...GTTTCCTGTCCCTCCTGTCACTGCCCCTCTGGAGGAGGCCTTTCTACTGGACAG 64% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000022791.9 |
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| CDS-3UTR GCA 90 bp | CTGTCCAGTAGAAAGGCCTCCTCCAGAGGGGCAGTGACAGGAGGGACAGGAAACGTGAGCTTCAGCGTTTaGCACGTAGATGAACCCGTC | + |
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Preference number: 4 (lower is better) Translates to: LSSRKASSRGAVTGGTGNVSFSV*HVDEPV Trigger: GACGGGTTCATCTACGTGGCAAACGCTGAAGCTCAC...GTTTCCTGTCCCTCCTGTCACTGCCCCTCTGGAGGAGGCCTTTCTACTGGACAG 57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000022791.9 |
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| CDS-3UTR CCA 90 bp | CAGAGGGGCAGTGACAGGAGGGACAGGAAACACATACACCATGTCCTGCGGCTTTCTGTACTTCCCAGCTaGCACAGATCGTGGGGTGAA | + |
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Preference number: 4 (lower is better) Translates to: QRGSDRRDRKHIHHVLRLSVLPS*HRSWGE Trigger: TTCACCCCACGATCTGTGCCAGCTGGGAAGTACAGA...AAGCCGCAGGACATGGTGTATGTGTTTCCTGTCCCTCCTGTCACTGCCCCTCTG 56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000022791.9 |
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| CDS-3UTR TCA 90 bp | CAGAGGGGCAGTGACAGGAGGGACAGGAAACACATACACCATGTCCTGCGGCTTCCATCAATCTGTCTGTaGGGTAAACCAGCAGTTGGG | + |
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Preference number: 4 (lower is better) Translates to: QRGSDRRDRKHIHHVLRLPSICL*GKPAVG Trigger: CCCAACTGCTGGTTTACCTCACAGACAGATTGATGG...AAGCCGCAGGACATGGTGTATGTGTTTCCTGTCCCTCCTGTCACTGCCCCTCTG 54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000022791.9 |
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| CDS-3UTR TCA 90 bp | CAGAGGGGCAGTGACAGGAGGGACAGGAAACACATACACCATGTCCTGCGGCTTGGTGGTTTAGAAGACTaGGGTGCAGCTCATGAGCTA | + |
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Preference number: 4 (lower is better) Translates to: QRGSDRRDRKHIHHVLRLGGLED*GAAHEL Trigger: TAGCTCATGAGCTGCACCTCAGTCTTCTAAACCACC...AAGCCGCAGGACATGGTGTATGTGTTTCCTGTCCCTCCTGTCACTGCCCCTCTG 54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000022791.9 |
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| CDS-3UTR CCA 90 bp | CAGAGGGGCAGTGACAGGAGGGACAGGAAACACATACACCATGTCCTGCGGCTTAGCTGGCACAGATCGTaGGGTGAAAGAAACGACAAG | + |
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Preference number: 4 (lower is better) Translates to: QRGSDRRDRKHIHHVLRLSWHRS*GERNDK Trigger: CTTGTCGTTTCTTTCACCCCACGATCTGTGCCAGCT...AAGCCGCAGGACATGGTGTATGTGTTTCCTGTCCCTCCTGTCACTGCCCCTCTG 54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000022791.9 |
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| CDS-3UTR CCA 90 bp | CAGAGGGGCAGTGACAGGAGGGACAGGAAACACATACACCATGTCCTGCGGCTTTGGACCATCCATGGGTaGTTTAGAAGACTGAGGTGC | + |
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Preference number: 4 (lower is better) Translates to: QRGSDRRDRKHIHHVLRLWTIHG*FRRLRC Trigger: GCACCTCAGTCTTCTAAACCACCCATGGATGGTCCA...AAGCCGCAGGACATGGTGTATGTGTTTCCTGTCCCTCCTGTCACTGCCCCTCTG 54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000022791.9 |
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| CDS-3UTR TCA 90 bp | CTGTCCAGTAGAAAGGCCTCCTCCAGAGGGGCAGTGACAGGAGGGACAGGAAACAACCGGGGTTCATTCTaGATGATCAGTGAGTGTAAG | + |
|
Preference number: 4 (lower is better) Translates to: LSSRKASSRGAVTGGTGNNRGSF*MISECK Trigger: CTTACACTCACTGATCATTCAGAATGAACCCCGGTT...GTTTCCTGTCCCTCCTGTCACTGCCCCTCTGGAGGAGGCCTTTCTACTGGACAG 53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000022791.9 |
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| CDS-3UTR TCA 90 bp | CAGAGGGGCAGTGACAGGAGGGACAGGAAACACATACACCATGTCCTGCGGCTTACTTCACACACTTTCTaGATCTGCGGGATCACACTG | + |
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Preference number: 4 (lower is better) Translates to: QRGSDRRDRKHIHHVLRLTSHTF*ICGITL Trigger: CAGTGTGATCCCGCAGATTCAGAAAGTGTGTGAAGT...AAGCCGCAGGACATGGTGTATGTGTTTCCTGTCCCTCCTGTCACTGCCCCTCTG 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000022791.9 |
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| CDS-3UTR CCA 90 bp | CTGTCCAGTAGAAAGGCCTCCTCCAGAGGGGCAGTGACAGGAGGGACAGGAAACCAGTTCTTCCAAACCTaGTCCAAACATAGCAAACCG | + |
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Preference number: 4 (lower is better) Translates to: LSSRKASSRGAVTGGTGNQFFQT*SKHSKP Trigger: CGGTTTGCTATGTTTGGACCAGGTTTGGAAGAACTG...GTTTCCTGTCCCTCCTGTCACTGCCCCTCTGGAGGAGGCCTTTCTACTGGACAG 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000022791.9 |
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| CDS-3UTR CCA 90 bp | CTGTCCAGTAGAAAGGCCTCCTCCAGAGGGGCAGTGACAGGAGGGACAGGAAACTGCTGGTTATTCAACTaGAAGTTGACTCCAGATCCA | + |
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Preference number: 4 (lower is better) Translates to: LSSRKASSRGAVTGGTGNCWLFN*KLTPDP Trigger: TGGATCTGGAGTCAACTTCCAGTTGAATAACCAGCA...GTTTCCTGTCCCTCCTGTCACTGCCCCTCTGGAGGAGGCCTTTCTACTGGACAG 52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000022791.9 |
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| CDS-3UTR TCA 90 bp | CAGAGGGGCAGTGACAGGAGGGACAGGAAACACATACACCATGTCCTGCGGCTTGGGGTTCATTCTGAATaGTCAGTGAGTGTAAGAAAG | + |
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Preference number: 4 (lower is better) Translates to: QRGSDRRDRKHIHHVLRLGVHSE*SVSVRK Trigger: CTTTCTTACACTCACTGATCATTCAGAATGAACCCC...AAGCCGCAGGACATGGTGTATGTGTTTCCTGTCCCTCCTGTCACTGCCCCTCTG 51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000022791.9 |
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| CDS-3UTR CCA 90 bp | CTGTCCAGTAGAAAGGCCTCCTCCAGAGGGGCAGTGACAGGAGGGACAGGAAACGGCTCTTCGCGTATATaGACAGCACATTTTATAAAC | + |
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Preference number: 4 (lower is better) Translates to: LSSRKASSRGAVTGGTGNGSSRI*TAHFIN Trigger: GTTTATAAAATGTGCTGTCCATATACGCGAAGAGCC...GTTTCCTGTCCCTCCTGTCACTGCCCCTCTGGAGGAGGCCTTTCTACTGGACAG 51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000022791.9 |
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| CDS-3UTR CCA 90 bp | CTGTCCAGTAGAAAGGCCTCCTCCAGAGGGGCAGTGACAGGAGGGACAGGAAACAAGATAAAACCAGCATaGGTCTTCCTGAAGATCCAA | + |
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Preference number: 4 (lower is better) Translates to: LSSRKASSRGAVTGGTGNKIKPA*VFLKIQ Trigger: TTGGATCTTCAGGAAGACCCATGCTGGTTTTATCTT...GTTTCCTGTCCCTCCTGTCACTGCCCCTCTGGAGGAGGCCTTTCTACTGGACAG 51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000022791.9 |
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| CDS-3UTR CCA 90 bp | CAGAGGGGCAGTGACAGGAGGGACAGGAAACACATACACCATGTCCTGCGGCTTGTATCTCCAGAGAATTaGGTCTCTTATAGTTTTGTT | + |
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Preference number: 4 (lower is better) Translates to: QRGSDRRDRKHIHHVLRLVSPEN*VSYSFV Trigger: AACAAAACTATAAGAGACCCAATTCTCTGGAGATAC...AAGCCGCAGGACATGGTGTATGTGTTTCCTGTCCCTCCTGTCACTGCCCCTCTG 48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000022791.9 |
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| CDS GCA 90 bp | CTTGGCCACCGAATACCAGAAGGTCCTCCAGCCGCTCAGGATGGCTaGCTCCAGGCGGCCCCAGTCGCTGGCGGGCGGCGGGGAGCCGGC | + |
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Preference number: 5 (lower is better) Translates to: LGHRIPEGPPAAQDG*LQAAPVAGGRRGAG Trigger: GCCGGCTCCCCGCCGCCCGCCAGCGACTGGGGCCGCCTGGAGGCAGCCATCCTGAGCGGCTGGAGGACCTTCTGGTATTCGGTGGCCAAG 73% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000022791.9 |
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| CDS CCA 90 bp | GCTCCTTGGCCACCGAATACCAGAAGGTCCTCCAGCCGCTCAGGATaGCTGCCTCCAGGCGGCCCCAGTCGCTGGCGGGCGGCGGGGAGC | + |
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Preference number: 5 (lower is better) Translates to: APWPPNTRRSSSRSG*LPPGGPSRWRAAGS Trigger: GCTCCCCGCCGCCCGCCAGCGACTGGGGCCGCCTGGAGGCAGCCATCCTGAGCGGCTGGAGGACCTTCTGGTATTCGGTGGCCAAGGAGC 72% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000022791.9 |
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| CDS GCA 90 bp | AGCTGGCACAGATCGTGGGGTGAAAGAAACGACAAGATATACAACTaGACATCAACCGGCAGCCGCGTCAGCGCGCTCGTCTCCTCCGCC | + |
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Preference number: 5 (lower is better) Translates to: SWHRSWGERNDKIYN*TSTGSRVSALVSSA Trigger: GGCGGAGGAGACGAGCGCGCTGACGCGGCTGCCGGTTGATGTGCAGTTGTATATCTTGTCGTTTCTTTCACCCCACGATCTGTGCCAGCT 59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000022791.9 |
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| CDS-3UTR CAA 90 bp | CAGAGGGGCAGTGACAGGAGGGACAGGAAACACATACACCATGTCCTGCGGCTTGAGGTAAACCAGCAGTaGGGCAAAGGTCCTCAGAAG | + |
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Preference number: 5 (lower is better) Translates to: QRGSDRRDRKHIHHVLRLEVNQQ*GKGPQK Trigger: CTTCTGAGGACCTTTGCCCAACTGCTGGTTTACCTC...AAGCCGCAGGACATGGTGTATGTGTTTCCTGTCCCTCCTGTCACTGCCCCTCTG 56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000022791.9 |
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| CDS-3UTR CAA 90 bp | CTGTCCAGTAGAAAGGCCTCCTCCAGAGGGGCAGTGACAGGAGGGACAGGAAACCCGAGAAAATTCATCTaGCCATTCATGACGTCGGTG | + |
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Preference number: 5 (lower is better) Translates to: LSSRKASSRGAVTGGTGNPRKFI*PFMTSV Trigger: CACCGACGTCATGAATGGCAAGATGAATTTTCTCGG...GTTTCCTGTCCCTCCTGTCACTGCCCCTCTGGAGGAGGCCTTTCTACTGGACAG 54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000022791.9 |
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| CDS TCA 90 bp | CTTGCCATTCATGACGTCGGTGAGCTTCAGCGTTTGCCACGTAGATaGACCCGTCTACGACTTCACACACTTTCTGAATCTGCGGGATCA | + |
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Preference number: 5 (lower is better) Translates to: LAIHDVGELQRLPRR*TRLRLHTLSESAGS Trigger: TGATCCCGCAGATTCAGAAAGTGTGTGAAGTCGTAGACGGGTTCATCTACGTGGCAAACGCTGAAGCTCACCGACGTCATGAATGGCAAG 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000022791.9 |
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| CDS-3UTR CAA 90 bp | CTGTCCAGTAGAAAGGCCTCCTCCAGAGGGGCAGTGACAGGAGGGACAGGAAACTTATTCAACTGGAAGTaGACTCCAGATCCAATACCA | + |
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Preference number: 5 (lower is better) Translates to: LSSRKASSRGAVTGGTGNLFNWK*TPDPIP Trigger: TGGTATTGGATCTGGAGTCAACTTCCAGTTGAATAA...GTTTCCTGTCCCTCCTGTCACTGCCCCTCTGGAGGAGGCCTTTCTACTGGACAG 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000022791.9 |
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| CDS TCA 90 bp | GTTCCAGTAATGATCTGTACTTCCCAGCTGGCACAGATCGTGGGGTaGAAGAAACGACAAGATATACAACTGCACATCAACCGGCAGCCG | + |
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Preference number: 5 (lower is better) Translates to: VPVMICTSQLAQIVG*KKRQDIQLHINRQP Trigger: CGGCTGCCGGTTGATGTGCAGTTGTATATCTTGTCGTTTCTTTCACCCCACGATCTGTGCCAGCTGGGAAGTACAGATCATTACTGGAAC 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000022791.9 |
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| CDS-3UTR CAA 90 bp | CTGTCCAGTAGAAAGGCCTCCTCCAGAGGGGCAGTGACAGGAGGGACAGGAAACCAGGATGTTGAATTTTaGCTGGTTATTCAACTGGAA | + |
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Preference number: 5 (lower is better) Translates to: LSSRKASSRGAVTGGTGNQDVEF*LVIQLE Trigger: TTCCAGTTGAATAACCAGCAAAAATTCAACATCCTG...GTTTCCTGTCCCTCCTGTCACTGCCCCTCTGGAGGAGGCCTTTCTACTGGACAG 50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000022791.9 |
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| CDS GCA 90 bp | AGAAAATTCATCTTGCCATTCATGACGTCGGTGAGCTTCAGCGTTTaGCACGTAGATGAACCCGTCTACGACTTCACACACTTTCTGAAT | + |
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Preference number: 5 (lower is better) Translates to: RKFILPFMTSVSFSV*HVDEPVYDFTHFLN Trigger: ATTCAGAAAGTGTGTGAAGTCGTAGACGGGTTCATCTACGTGGCAAACGCTGAAGCTCACCGACGTCATGAATGGCAAGATGAATTTTCT 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000022791.9 |
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| CDS CCA 90 bp | CACTCCATACATAGGACGGCTGGCTTTCAAGGCTCTTCGCGTATATaGACAGCACATTTTATAAACCTCCATGTAATCAAGACAAGTGCT | + |
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Preference number: 5 (lower is better) Translates to: HSIHRTAGFQGSSRI*TAHFINLHVIKTSA Trigger: AGCACTTGTCTTGATTACATGGAGGTTTATAAAATGTGCTGTCCATATACGCGAAGAGCCTTGAAAGCCAGCCGTCCTATGTATGGAGTG 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000022791.9 |
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| CDS TCA 90 bp | AGTTCTTCCAAACCTGGTCCAAACATAGCAAACCGGGGTTCATTCTaGATGATCAGTGAGTGTAAGAAAGAGGTAACCACTCCATACATA | + |
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Preference number: 5 (lower is better) Translates to: SSSKPGPNIANRGSF*MISECKKEVTTPYI Trigger: TATGTATGGAGTGGTTACCTCTTTCTTACACTCACTGATCATTCAGAATGAACCCCGGTTTGCTATGTTTGGACCAGGTTTGGAAGAACT 42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000022791.9 |
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| CDS GCA 72 bp | CGAATACCAGAAGGTCCTCCAGCCGCTCAGGATGGCTaGCTCCAGGCGGCCCCAGTCGCTGGCGGGCGGCGG | + |
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Preference number: 6 (lower is better) Translates to: RIPEGPPAAQDG*LQAAPVAGGRR Trigger: CCGCCGCCCGCCAGCGACTGGGGCCGCCTGGAGGCAGCCATCCTGAGCGGCTGGAGGACCTTCTGGTATTCG 72% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000022791.9 |
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| CDS CCA 72 bp | CCACCGAATACCAGAAGGTCCTCCAGCCGCTCAGGATaGCTGCCTCCAGGCGGCCCCAGTCGCTGGCGGGCG | + |
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Preference number: 6 (lower is better) Translates to: PPNTRRSSSRSG*LPPGGPSRWRA Trigger: CGCCCGCCAGCGACTGGGGCCGCCTGGAGGCAGCCATCCTGAGCGGCTGGAGGACCTTCTGGTATTCGGTGG 71% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000022791.9 |
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| CDS CAA 72 bp | GCCTCCTTCCGGGAGGCCGTCGGCGTCGCCCGCTCCTaGGCCACCGAATACCAGAAGGTCCTCCAGCCGCTC | + |
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Preference number: 6 (lower is better) Translates to: ASFREAVGVARS*ATEYQKVLQPL Trigger: GAGCGGCTGGAGGACCTTCTGGTATTCGGTGGCCAAGGAGCGGGCGACGCCGACGGCCTCCCGGAAGGAGGC 71% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000022791.9 |
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| CDS CCA 72 bp | CCTCCTTCCGGGAGGCCGTCGGCGTCGCCCGCTCCTTaGCCACCGAATACCAGAAGGTCCTCCAGCCGCTCA | + |
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Preference number: 6 (lower is better) Translates to: PPSGRPSASPAP*PPNTRRSSSRS Trigger: TGAGCGGCTGGAGGACCTTCTGGTATTCGGTGGCCAAGGAGCGGGCGACGCCGACGGCCTCCCGGAAGGAGG 69% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000022791.9 |
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| CDS CAA 72 bp | TGCTGCTCGTCCCCCTCACTCTGTAGGCTGAACATCTaGTTAACGGTGCTGGTGTGCTCCTCCCTTGCTCTG | + |
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Preference number: 6 (lower is better) Translates to: CCSSPSLCRLNI*LTVLVCSSLAL Trigger: CAGAGCAAGGGAGGAGCACACCAGCACCGTTAACAAGATGTTCAGCCTACAGAGTGAGGGGGACGAGCAGCA 57% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000022791.9 |
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| CDS GCA 72 bp | AGATCGTGGGGTGAAAGAAACGACAAGATATACAACTaGACATCAACCGGCAGCCGCGTCAGCGCGCTCGTC | + |
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Preference number: 6 (lower is better) Translates to: RSWGERNDKIYN*TSTGSRVSALV Trigger: GACGAGCGCGCTGACGCGGCTGCCGGTTGATGTGCAGTTGTATATCTTGTCGTTTCTTTCACCCCACGATCT 56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000022791.9 |
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| CDS GCA 72 bp | ATCTTGCCATTCATGACGTCGGTGAGCTTCAGCGTTTaGCACGTAGATGAACCCGTCTACGACTTCACACAC | + |
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Preference number: 6 (lower is better) Translates to: ILPFMTSVSFSV*HVDEPVYDFTH Trigger: GTGTGTGAAGTCGTAGACGGGTTCATCTACGTGGCAAACGCTGAAGCTCACCGACGTCATGAATGGCAAGAT 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000022791.9 |
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| CDS TCA 72 bp | CATGACGTCGGTGAGCTTCAGCGTTTGCCACGTAGATaGACCCGTCTACGACTTCACACACTTTCTGAATCT | + |
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Preference number: 6 (lower is better) Translates to: HDVGELQRLPRR*TRLRLHTLSES Trigger: AGATTCAGAAAGTGTGTGAAGTCGTAGACGGGTTCATCTACGTGGCAAACGCTGAAGCTCACCGACGTCATG 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000022791.9 |
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| CDS CAA 72 bp | TGGGTCTGTCATGGCCATAATCCGAGAAAATTCATCTaGCCATTCATGACGTCGGTGAGCTTCAGCGTTTGC | + |
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Preference number: 6 (lower is better) Translates to: WVCHGHNPRKFI*PFMTSVSFSVC Trigger: GCAAACGCTGAAGCTCACCGACGTCATGAATGGCAAGATGAATTTTCTCGGATTATGGCCATGACAGACCCA 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000022791.9 |
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| CDS CAA 90 bp | TCCAAAAGCTGGGTCTGTCATGGCCATAATCCGAGAAAATTCATCTaGCCATTCATGACGTCGGTGAGCTTCAGCGTTTGCCACGTAGAT | + |
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Preference number: 6 (lower is better) Translates to: SKSWVCHGHNPRKFI*PFMTSVSFSVCHVD Trigger: ATCTACGTGGCAAACGCTGAAGCTCACCGACGTCATGAATGGCAAGATGAATTTTCTCGGATTATGGCCATGACAGACCCAGCTTTTGGA 48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000022791.9 |
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| CDS TCA 72 bp | ATGATCTGTACTTCCCAGCTGGCACAGATCGTGGGGTaGAAGAAACGACAAGATATACAACTGCACATCAAC | + |
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Preference number: 6 (lower is better) Translates to: MICTSQLAQIVG*KKRQDIQLHIN Trigger: GTTGATGTGCAGTTGTATATCTTGTCGTTTCTTTCACCCCACGATCTGTGCCAGCTGGGAAGTACAGATCAT 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000022791.9 |
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| CDS TCA 72 bp | AAGTTGACTCCAGATCCAATACCATCAATCTGTCTGTaGGGTAAACCAGCAGTTGGGCAAAGGTCCTCAGAA | + |
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Preference number: 6 (lower is better) Translates to: KLTPDPIPSICL*GKPAVGQRSSE Trigger: TTCTGAGGACCTTTGCCCAACTGCTGGTTTACCTCACAGACAGATTGATGGTATTGGATCTGGAGTCAACTT 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000022791.9 |
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| CDS CCA 72 bp | ACTCAACACCAAGGATGTGTTCAGTTCTTCCAAACCTaGTCCAAACATAGCAAACCGGGGTTCATTCTGAAT | + |
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Preference number: 6 (lower is better) Translates to: TQHQGCVQFFQT*SKHSKPGFILN Trigger: ATTCAGAATGAACCCCGGTTTGCTATGTTTGGACCAGGTTTGGAAGAACTGAACACATCCTTGGTGTTGAGT 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000022791.9 |
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| CDS TCA 72 bp | AAACCTGGTCCAAACATAGCAAACCGGGGTTCATTCTaGATGATCAGTGAGTGTAAGAAAGAGGTAACCACT | + |
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Preference number: 6 (lower is better) Translates to: KPGPNIANRGSF*MISECKKEVTT Trigger: AGTGGTTACCTCTTTCTTACACTCACTGATCATTCAGAATGAACCCCGGTTTGCTATGTTTGGACCAGGTTT 43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000022791.9 |
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| CDS CCA 72 bp | AGGGAGATCCCGCAACAGAAAGTATCTCCAGAGAATTaGGTCTCTTATAGTTTTGTTCCAGTAATGATCTGT | + |
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Preference number: 6 (lower is better) Translates to: REIPQQKVSPEN*VSYSFVPVMIC Trigger: ACAGATCATTACTGGAACAAAACTATAAGAGACCCAATTCTCTGGAGATACTTTCTGTTGCGGGATCTCCCT 42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000022791.9 |
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| CDS CCA 72 bp | TTACATCTGCTTGAGAAATACAAGATAAAACCAGCATaGGTCTTCCTGAAGATCCAAAAGCTGGGTCTGTCA | + |
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Preference number: 6 (lower is better) Translates to: LHLLEKYKIKPA*VFLKIQKLGLS Trigger: TGACAGACCCAGCTTTTGGATCTTCAGGAAGACCCATGCTGGTTTTATCTTGTATTTCTCAAGCAGATGTAA 42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000022791.9 |
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| CDS CAA 90 bp | GCTCTGTCTCTTTCTTTTCTGGTAGTCGAGTATAATATCAGGATGTaGAATTTTTGCTGGTTATTCAACTGGAAGTTGACTCCAGATCCA | + |
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Preference number: 6 (lower is better) Translates to: ALSLSFLVVEYNIRM*NFCWLFNWKLTPDP Trigger: TGGATCTGGAGTCAACTTCCAGTTGAATAACCAGCAAAAATTCAACATCCTGATATTATACTCGACTACCAGAAAAGAAAGAGACAGAGC 39% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000022791.9 |
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| CDS CCA 72 bp | AATATCAGGATGTTGAATTTTTGCTGGTTATTCAACTaGAAGTTGACTCCAGATCCAATACCATCAATCTGT | + |
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Preference number: 6 (lower is better) Translates to: NIRMLNFCWLFN*KLTPDPIPSIC Trigger: ACAGATTGATGGTATTGGATCTGGAGTCAACTTCCAGTTGAATAACCAGCAAAAATTCAACATCCTGATATT 36% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000022791.9 |
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