RADAR | Search for sensor designs | Human genes | Mouse genes | Code

Pregenerated sensors for FBXO39 (Mus musculus)

Ensembl gene IDs: ENSMUSG00000070388

Ensembl transcript IDs: ENSMUST00000108504.2

Found 71 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).

Type Sensor Details
3UTR TCA 72 bp AGGAATGAGGGCACGGGAGCCCCAAATCTAATTCACTaGGAACCAGGTTTTCAGGTTCAAAGTGCATCTAGA +
Preference number: 3 (lower is better)
Translates to: RNEGTGAPNLIH*EPGFQVQSASR
Trigger: TCTAGATGCACTTTGAACCTGAAAACCTGGTTCTCAGTGAATTAGATTTGGGGCTCCCGTGCCCTCATTCCT
47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000108504.2
CDS-3UTR CCA 90 bp AACCTTGCCATCACCACCAGCCCAGCCTTCACAAGGCTGGTCATGATGGTGTGGTCGCAGGCACACATCTaGCAGAGTGGCCCAGCAGCT +
Preference number: 4 (lower is better)
Translates to: NLAITTSPAFTRLVMMVWSQAHI*QSGPAA
Trigger: AGCTGCTGGGCCACTCTGCCAGATGTGTGCCTGCGA...CCACACCATCATGACCAGCCTTGTGAAGGCTGGGCTGGTGGTGATGGCAAGGTT
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000108504.2
CDS-3UTR CCA 90 bp TGCCATCACCACCAGCCCAGCCTTCACAAGGCTGGTCATGATGGTGTGGAACTGCACTGCCCTTCCTCCTaGCTCTTCAGGATCCGCTCC +
Preference number: 4 (lower is better)
Translates to: CHHHQPSLHKAGHDGVELHCPSS*LFRIRS
Trigger: GGAGCGGATCCTGAAGAGCCAGGAGGAAGGGCAGTG...CAGTTCCACACCATCATGACCAGCCTTGTGAAGGCTGGGCTGGTGGTGATGGCA
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000108504.2
CDS-3UTR TCA 90 bp TGCCATCACCACCAGCCCAGCCTTCACAAGGCTGGTCATGATGGTGTGGAACTGGGGCTCCTTTCAGGCTaGGATGGTCCAGGTGTTTGC +
Preference number: 4 (lower is better)
Translates to: CHHHQPSLHKAGHDGVELGLLSG*DGPGVC
Trigger: GCAAACACCTGGACCATCTCAGCCTGAAAGGAGCCC...CAGTTCCACACCATCATGACCAGCCTTGTGAAGGCTGGGCTGGTGGTGATGGCA
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000108504.2
CDS-3UTR CCA 90 bp TGCCATCACCACCAGCCCAGCCTTCACAAGGCTGGTCATGATGGTGTGGAACTGTCACCTTCAGGTTGCTaGCCTGCCTGGCCAACTTGG +
Preference number: 4 (lower is better)
Translates to: CHHHQPSLHKAGHDGVELSPSGC*PAWPTW
Trigger: CCAAGTTGGCCAGGCAGGCCAGCAACCTGAAGGTGA...CAGTTCCACACCATCATGACCAGCCTTGTGAAGGCTGGGCTGGTGGTGATGGCA
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000108504.2
CDS-3UTR TCA 90 bp AACCTTGCCATCACCACCAGCCCAGCCTTCACAAGGCTGGTCATGATGGTGTGGTGGCCATGGCCTTGTTaGACTGGGAGCTGCCATAGA +
Preference number: 4 (lower is better)
Translates to: NLAITTSPAFTRLVMMVWWPWPC*TGSCHR
Trigger: TCTATGGCAGCTCCCAGTTCAACAAGGCCATGGCCA...CCACACCATCATGACCAGCCTTGTGAAGGCTGGGCTGGTGGTGATGGCAAGGTT
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000108504.2
CDS-3UTR GCA 90 bp TGCCATCACCACCAGCCCAGCCTTCACAAGGCTGGTCATGATGGTGTGGAACTGAGTTCACCTTCAGGTTaGTGGCCTGCCTGGCCAACT +
Preference number: 4 (lower is better)
Translates to: CHHHQPSLHKAGHDGVELSSPSG*WPAWPT
Trigger: AGTTGGCCAGGCAGGCCAGCAACCTGAAGGTGAACT...CAGTTCCACACCATCATGACCAGCCTTGTGAAGGCTGGGCTGGTGGTGATGGCA
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000108504.2
CDS-3UTR CCA 90 bp TGCCATCACCACCAGCCCAGCCTTCACAAGGCTGGTCATGATGGTGTGGAACTGCAGCAGCTCTGCTCTTaGAGCTGGGTCACTTCACAG +
Preference number: 4 (lower is better)
Translates to: CHHHQPSLHKAGHDGVELQQLCS*SWVTSQ
Trigger: CTGTGAAGTGACCCAGCTCCAAGAGCAGAGCTGCTG...CAGTTCCACACCATCATGACCAGCCTTGTGAAGGCTGGGCTGGTGGTGATGGCA
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000108504.2
CDS-3UTR GCA 90 bp TGCCATCACCACCAGCCCAGCCTTCACAAGGCTGGTCATGATGGTGTGGAACTGTTAGGAATGTCAAGTTaGGGAAGGTGGCCATGGCCT +
Preference number: 4 (lower is better)
Translates to: CHHHQPSLHKAGHDGVELLGMSS*GRWPWP
Trigger: AGGCCATGGCCACCTTCCGCAACTTGACATTCCTAA...CAGTTCCACACCATCATGACCAGCCTTGTGAAGGCTGGGCTGGTGGTGATGGCA
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000108504.2
CDS-3UTR GCA 90 bp AACCTTGCCATCACCACCAGCCCAGCCTTCACAAGGCTGGTCATGATGGTGTGGGCCAAGATGAGGAGATaGAGCTGCTCATCTAGAGAC +
Preference number: 4 (lower is better)
Translates to: NLAITTSPAFTRLVMMVWAKMRR*SCSSRD
Trigger: GTCTCTAGATGAGCAGCTGCATCTCCTCATCTTGGC...CCACACCATCATGACCAGCCTTGTGAAGGCTGGGCTGGTGGTGATGGCAAGGTT
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000108504.2
CDS-3UTR CCA 90 bp TGCCATCACCACCAGCCCAGCCTTCACAAGGCTGGTCATGATGGTGTGGAACTGCCTCGCATGGTGACCTaGAACTTTTTGGTCAAGACG +
Preference number: 4 (lower is better)
Translates to: CHHHQPSLHKAGHDGVELPRMVT*NFLVKT
Trigger: CGTCTTGACCAAAAAGTTCCAGGTCACCATGCGAGG...CAGTTCCACACCATCATGACCAGCCTTGTGAAGGCTGGGCTGGTGGTGATGGCA
54% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000108504.2
CDS-3UTR CCA 90 bp AACCTTGCCATCACCACCAGCCCAGCCTTCACAAGGCTGGTCATGATGGTGTGGGCTGATGCTCCTGACTaGAATCTCCTGCAGCAAGAT +
Preference number: 4 (lower is better)
Translates to: NLAITTSPAFTRLVMMVWADAPD*NLLQQD
Trigger: ATCTTGCTGCAGGAGATTCCAGTCAGGAGCATCAGC...CCACACCATCATGACCAGCCTTGTGAAGGCTGGGCTGGTGGTGATGGCAAGGTT
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000108504.2
CDS-3UTR TCA 90 bp AGCCCAGCCTTCACAAGGCTGGTCATGATGGTGTGGAACTGGCTAAAGAAGAGATCCGACAGGCCAAGATaGGGAGATGCAGCTGCTCAT +
Preference number: 4 (lower is better)
Translates to: SPAFTRLVMMVWNWLKKRSDRPR*GDAAAH
Trigger: ATGAGCAGCTGCATCTCCTCATCTTGGCCTGTCGGA...TCTCTTCTTTAGCCAGTTCCACACCATCATGACCAGCCTTGTGAAGGCTGGGCT
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000108504.2
CDS-3UTR TCA 90 bp AACCTTGCCATCACCACCAGCCCAGCCTTCACAAGGCTGGTCATGATGGTGTGGGGAAAGCCCAGATTTTaGAGTAAAACAGCTTCCGAC +
Preference number: 4 (lower is better)
Translates to: NLAITTSPAFTRLVMMVWGKPRF*SKTASD
Trigger: GTCGGAAGCTGTTTTACTTCAAAATCTGGGCTTTCC...CCACACCATCATGACCAGCCTTGTGAAGGCTGGGCTGGTGGTGATGGCAAGGTT
52% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 1 transcripts:
ENSMUST00000108504.2
CDS-3UTR GCA 90 bp AACCAGGTTTTCAGGTTCAAAGTGCATCTAGATGTCTTCCTCTGGAGAGCACTCGTGGCCCAGCAGCTCTaGTCTTGGAGCTGGGTCACT +
Preference number: 4 (lower is better)
Translates to: NQVFRFKVHLDVFLWRALVAQQL*SWSWVT
Trigger: AGTGACCCAGCTCCAAGAGCAGAGCTGCTGGGCCAC...GAGTGCTCTCCAGAGGAAGACATCTAGATGCACTTTGAACCTGAAAACCTGGTT
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000108504.2
CDS-3UTR CCA 90 bp AACCAGGTTTTCAGGTTCAAAGTGCATCTAGATGTCTTCCTCTGGAGAGCACTCGGGTGTTCCGGAAGGTaGGCAGGAGGTCTGTCAGAG +
Preference number: 4 (lower is better)
Translates to: NQVFRFKVHLDVFLWRALGCSGR*AGGLSE
Trigger: CTCTGACAGACCTCCTGCCCACCTTCCGGAACACCC...GAGTGCTCTCCAGAGGAAGACATCTAGATGCACTTTGAACCTGAAAACCTGGTT
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000108504.2
CDS-3UTR GCA 90 bp AACCAGGTTTTCAGGTTCAAAGTGCATCTAGATGTCTTCCTCTGGAGAGCACTCGGCGGTTGTTACTCTTaGCCAGGCATGACAGGAGGC +
Preference number: 4 (lower is better)
Translates to: NQVFRFKVHLDVFLWRALGGCYS*PGMTGG
Trigger: GCCTCCTGTCATGCCTGGGCAAGAGTAACAACCGCC...GAGTGCTCTCCAGAGGAAGACATCTAGATGCACTTTGAACCTGAAAACCTGGTT
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000108504.2
CDS-3UTR CCA 90 bp AACCAGGTTTTCAGGTTCAAAGTGCATCTAGATGTCTTCCTCTGGAGAGCACTCACACATCTGGCAGAGTaGCCCAGCAGCTCTGCTCTT +
Preference number: 4 (lower is better)
Translates to: NQVFRFKVHLDVFLWRALTHLAE*PSSSAL
Trigger: AAGAGCAGAGCTGCTGGGCCACTCTGCCAGATGTGT...GAGTGCTCTCCAGAGGAAGACATCTAGATGCACTTTGAACCTGAAAACCTGGTT
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000108504.2
CDS-3UTR CCA 90 bp AACCAGGTTTTCAGGTTCAAAGTGCATCTAGATGTCTTCCTCTGGAGAGCACTCAGGGAGTTGAGGATGTaGCAGCCTTGCTCCACTGTC +
Preference number: 4 (lower is better)
Translates to: NQVFRFKVHLDVFLWRALRELRM*QPCSTV
Trigger: GACAGTGGAGCAAGGCTGCCACATCCTCAACTCCCT...GAGTGCTCTCCAGAGGAAGACATCTAGATGCACTTTGAACCTGAAAACCTGGTT
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000108504.2
CDS-3UTR CCA 90 bp ACTGAGAACCAGGTTTTCAGGTTCAAAGTGCATCTAGATGTCTTCCTCTGGAGACCTGCCTGGCCAACTTaGCCCAAGACATACCCCAGA +
Preference number: 4 (lower is better)
Translates to: TENQVFRFKVHLDVFLWRPAWPT*PKTYPR
Trigger: TCTGGGGTATGTCTTGGGCCAAGTTGGCCAGGCAGG...TCTCCAGAGGAAGACATCTAGATGCACTTTGAACCTGAAAACCTGGTTCTCAGT
50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000108504.2
CDS-3UTR GCA 90 bp ACTGAGAACCAGGTTTTCAGGTTCAAAGTGCATCTAGATGTCTTCCTCTGGAGATCTGGTTCCACTTTCTaGAGACCAGGGCAGCTCTGG +
Preference number: 4 (lower is better)
Translates to: TENQVFRFKVHLDVFLWRSGSTF*RPGQLW
Trigger: CCAGAGCTGCCCTGGTCTGCAGAAAGTGGAACCAGA...TCTCCAGAGGAAGACATCTAGATGCACTTTGAACCTGAAAACCTGGTTCTCAGT
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000108504.2
CDS-3UTR TCA 90 bp AACCAGGTTTTCAGGTTCAAAGTGCATCTAGATGTCTTCCTCTGGAGAGCACTCTCGCCAGAGGTCAGCTaGGTACATAATCTGGTTCCA +
Preference number: 4 (lower is better)
Translates to: NQVFRFKVHLDVFLWRALSPEVS*VHNLVP
Trigger: TGGAACCAGATTATGTACTCAGCTGACCTCTGGCGA...GAGTGCTCTCCAGAGGAAGACATCTAGATGCACTTTGAACCTGAAAACCTGGTT
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000108504.2
CDS-3UTR TCA 90 bp ACTGAGAACCAGGTTTTCAGGTTCAAAGTGCATCTAGATGTCTTCCTCTGGAGACATGAACGTGGCATTTaGTGTTCATGGTCCGGAGGG +
Preference number: 4 (lower is better)
Translates to: TENQVFRFKVHLDVFLWRHERGI*CSWSGG
Trigger: CCCTCCGGACCATGAACATCAAATGCCACGTTCATG...TCTCCAGAGGAAGACATCTAGATGCACTTTGAACCTGAAAACCTGGTTCTCAGT
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000108504.2
CDS-3UTR TCA 90 bp AACCAGGTTTTCAGGTTCAAAGTGCATCTAGATGTCTTCCTCTGGAGAGCACTCAAGGGTTCAGGAACTTaGTTTCCAAGTGTTCCAGGT +
Preference number: 4 (lower is better)
Translates to: NQVFRFKVHLDVFLWRALKGSGT*FPSVPG
Trigger: ACCTGGAACACTTGGAAATCAAGTTCCTGAACCCTT...GAGTGCTCTCCAGAGGAAGACATCTAGATGCACTTTGAACCTGAAAACCTGGTT
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000108504.2
CDS-3UTR TCA 90 bp AACCAGGTTTTCAGGTTCAAAGTGCATCTAGATGTCTTCCTCTGGAGAGCACTCTTCAATGTTGAGCTCTaGAGCCATGTTCTCATTCTG +
Preference number: 4 (lower is better)
Translates to: NQVFRFKVHLDVFLWRALFNVEL*SHVLIL
Trigger: CAGAATGAGAACATGGCTTCAGAGCTCAACATTGAA...GAGTGCTCTCCAGAGGAAGACATCTAGATGCACTTTGAACCTGAAAACCTGGTT
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000108504.2
CDS-3UTR GCA 90 bp AACCAGGTTTTCAGGTTCAAAGTGCATCTAGATGTCTTCCTCTGGAGAGCACTCGATGGTCCAGGTGTTTaGCCATTTTCTTTAAGAAAA +
Preference number: 4 (lower is better)
Translates to: NQVFRFKVHLDVFLWRALDGPGV*PFSLRK
Trigger: TTTTCTTAAAGAAAATGGGCAAACACCTGGACCATC...GAGTGCTCTCCAGAGGAAGACATCTAGATGCACTTTGAACCTGAAAACCTGGTT
42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000108504.2
CDS CCA 90 bp GTCCCTGTCTCCCAGCCACCAGAAAACACGTCGCAGGCACACATCTaGCAGAGTGGCCCAGCAGCTCTGCTCTTGGAGCTGGGTCACTTC +
Preference number: 5 (lower is better)
Translates to: VPVSQPPENTSQAHI*QSGPAALLLELGHF
Trigger: GAAGTGACCCAGCTCCAAGAGCAGAGCTGCTGGGCCACTCTGCCAGATGTGTGCCTGCGACGTGTTTTCTGGTGGCTGGGAGACAGGGAC
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000108504.2
CDS CCA 90 bp CTCCCAGCCACCAGAAAACACGTCGCAGGCACACATCTGGCAGAGTaGCCCAGCAGCTCTGCTCTTGGAGCTGGGTCACTTCACAGTCTT +
Preference number: 5 (lower is better)
Translates to: LPATRKHVAGTHLAE*PSSSALGAGSLHSL
Trigger: AAGACTGTGAAGTGACCCAGCTCCAAGAGCAGAGCTGCTGGGCCACTCTGCCAGATGTGTGCCTGCGACGTGTTTTCTGGTGGCTGGGAG
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000108504.2
CDS-3UTR CAA 90 bp TGCCATCACCACCAGCCCAGCCTTCACAAGGCTGGTCATGATGGTGTGGAACTGAGGCGGTTGTTACTCTaGCCCAGGCATGACAGGAGG +
Preference number: 5 (lower is better)
Translates to: CHHHQPSLHKAGHDGVELRRLLL*PRHDRR
Trigger: CCTCCTGTCATGCCTGGGCAAGAGTAACAACCGCCT...CAGTTCCACACCATCATGACCAGCCTTGTGAAGGCTGGGCTGGTGGTGATGGCA
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000108504.2
CDS-3UTR CAA 90 bp TGCCATCACCACCAGCCCAGCCTTCACAAGGCTGGTCATGATGGTGTGGAACTGAAGTTCACCTTCAGGTaGCTGGCCTGCCTGGCCAAC +
Preference number: 5 (lower is better)
Translates to: CHHHQPSLHKAGHDGVELKFTFR*LACLAN
Trigger: GTTGGCCAGGCAGGCCAGCAACCTGAAGGTGAACTT...CAGTTCCACACCATCATGACCAGCCTTGTGAAGGCTGGGCTGGTGGTGATGGCA
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000108504.2
CDS TCA 90 bp ACATACCCCAGACTACCTGACCGTGAGGGTCATGAACGTGGCATTTaGTGTTCATGGTCCGGAGGGTCCCGGCGTTGTTCTCGCTCAAGG +
Preference number: 5 (lower is better)
Translates to: TYPRLPDREGHERGI*CSWSGGSRRCSRSR
Trigger: CCTTGAGCGAGAACAACGCCGGGACCCTCCGGACCATGAACATCAAATGCCACGTTCATGACCCTCACGGTCAGGTAGTCTGGGGTATGT
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000108504.2
CDS CCA 90 bp TCACCCGCTCAAAGAAGAAGTTCACCTTCAGGTTGCTGGCCTGCCTaGCCAACTTGGCCCAAGACATACCCCAGACTACCTGACCGTGAG +
Preference number: 5 (lower is better)
Translates to: SPAQRRSSPSGCWPA*PTWPKTYPRLPDRE
Trigger: CTCACGGTCAGGTAGTCTGGGGTATGTCTTGGGCCAAGTTGGCCAGGCAGGCCAGCAACCTGAAGGTGAACTTCTTCTTTGAGCGGGTGA
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000108504.2
CDS TCA 90 bp CGGCCTTCCGCTGAACGTGATGGTCCTGTATCGCCAGAGGTCAGCTaGGTACATAATCTGGTTCCACTTTCTGCAGACCAGGGCAGCTCT +
Preference number: 5 (lower is better)
Translates to: RPSAERDGPVSPEVS*VHNLVPLSADQGSS
Trigger: AGAGCTGCCCTGGTCTGCAGAAAGTGGAACCAGATTATGTACTCAGCTGACCTCTGGCGATACAGGACCATCACGTTCAGCGGAAGGCCG
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000108504.2
CDS CCA 90 bp CCCCTAATGCTATTTCTCCAGACCAGCCGATCCAGCTCCAGGTGTTaGATAGAGAGTGACCGCAGGCGGTTGTTACTCTTGCCCAGGCAT +
Preference number: 5 (lower is better)
Translates to: PLMLFLQTSRSSSRC*IESDRRRLLLLPRH
Trigger: ATGCCTGGGCAAGAGTAACAACCGCCTGCGGTCACTCTCTATCCAACACCTGGAGCTGGATCGGCTGGTCTGGAGAAATAGCATTAGGGG
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000108504.2
CDS TCA 90 bp GGCGGTTGTTACTCTTGCCCAGGCATGACAGGAGGCCTCGCATGGTaGCCTGGAACTTTTTGGTCAAGACGGCATTGTAAGGGTTCAGGA +
Preference number: 5 (lower is better)
Translates to: GGCYSCPGMTGGLAW*PGTFWSRRHCKGSG
Trigger: TCCTGAACCCTTACAATGCCGTCTTGACCAAAAAGTTCCAGGTCACCATGCGAGGCCTCCTGTCATGCCTGGGCAAGAGTAACAACCGCC
54% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000108504.2
CDS CCA 90 bp AACGTGATGGTCCTGTATCGCCAGAGGTCAGCTGAGTACATAATCTaGTTCCACTTTCTGCAGACCAGGGCAGCTCTGGACCTGTCCCTG +
Preference number: 5 (lower is better)
Translates to: NVMVLYRQRSAEYII*FHFLQTRAALDLSL
Trigger: CAGGGACAGGTCCAGAGCTGCCCTGGTCTGCAGAAAGTGGAACCAGATTATGTACTCAGCTGACCTCTGGCGATACAGGACCATCACGTT
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000108504.2
CDS CCA 90 bp CAAAGAAGAAGTTCACCTTCAGGTTGCTGGCCTGCCTGGCCAACTTaGCCCAAGACATACCCCAGACTACCTGACCGTGAGGGTCATGAA +
Preference number: 5 (lower is better)
Translates to: QRRSSPSGCWPAWPT*PKTYPRLPDREGHE
Trigger: TTCATGACCCTCACGGTCAGGTAGTCTGGGGTATGTCTTGGGCCAAGTTGGCCAGGCAGGCCAGCAACCTGAAGGTGAACTTCTTCTTTG
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000108504.2
CDS-3UTR CAA 90 bp AGCCCAGCCTTCACAAGGCTGGTCATGATGGTGTGGAACTGGCTAAAGAAGAGACCAGCAGCTCTGCTCTaGGAGCTGGGTCACTTCACA +
Preference number: 5 (lower is better)
Translates to: SPAFTRLVMMVWNWLKKRPAALL*ELGHFT
Trigger: TGTGAAGTGACCCAGCTCCAAGAGCAGAGCTGCTGG...TCTCTTCTTTAGCCAGTTCCACACCATCATGACCAGCCTTGTGAAGGCTGGGCT
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000108504.2
CDS-3UTR CAA 90 bp AGCCCAGCCTTCACAAGGCTGGTCATGATGGTGTGGAACTGGCTAAAGAAGAGAAAGGTGGCCATGGCCTaGTTGAACTGGGAGCTGCCA +
Preference number: 5 (lower is better)
Translates to: SPAFTRLVMMVWNWLKKRKVAMA*LNWELP
Trigger: TGGCAGCTCCCAGTTCAACAAGGCCATGGCCACCTT...TCTCTTCTTTAGCCAGTTCCACACCATCATGACCAGCCTTGTGAAGGCTGGGCT
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000108504.2
CDS TCA 90 bp TCTCGCTCAAGGTCTCGAGCAGCTCGTCGGAGATACAGTTGTAGTTaGGGGTTAGGAATGTCAAGTTGCGGAAGGTGGCCATGGCCTTGT +
Preference number: 5 (lower is better)
Translates to: SRSRSRAARRRYSCS*GLGMSSCGRWPWPC
Trigger: ACAAGGCCATGGCCACCTTCCGCAACTTGACATTCCTAACCCTCAACTACAACTGTATCTCCGACGAGCTGCTCGAGACCTTGAGCGAGA
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000108504.2
CDS GCA 90 bp TCGGCCAAATTTCTTAATGTACCACAGTGCCGACTCGAATTCAGATaGGTGTACCCTGGACGGCCTTCCGCTGAACGTGATGGTCCTGTA +
Preference number: 5 (lower is better)
Translates to: SAKFLNVPQCRLEFR*VYPGRPSAERDGPV
Trigger: TACAGGACCATCACGTTCAGCGGAAGGCCGTCCAGGGTACACGCATCTGAATTCGAGTCGGCACTGTGGTACATTAAGAAATTTGGCCGA
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000108504.2
CDS CCA 90 bp CATATTTCATCACCCGCTCAAAGAAGAAGTTCACCTTCAGGTTGCTaGCCTGCCTGGCCAACTTGGCCCAAGACATACCCCAGACTACCT +
Preference number: 5 (lower is better)
Translates to: HISSPAQRRSSPSGC*PAWPTWPKTYPRLP
Trigger: AGGTAGTCTGGGGTATGTCTTGGGCCAAGTTGGCCAGGCAGGCCAGCAACCTGAAGGTGAACTTCTTCTTTGAGCGGGTGATGAAATATG
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000108504.2
CDS-3UTR CAA 90 bp ACTGAGAACCAGGTTTTCAGGTTCAAAGTGCATCTAGATGTCTTCCTCTGGAGAGCCTGCCTGGCCAACTaGGCCCAAGACATACCCCAG +
Preference number: 5 (lower is better)
Translates to: TENQVFRFKVHLDVFLWRACLAN*AQDIPQ
Trigger: CTGGGGTATGTCTTGGGCCAAGTTGGCCAGGCAGGC...TCTCCAGAGGAAGACATCTAGATGCACTTTGAACCTGAAAACCTGGTTCTCAGT
52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000108504.2
CDS GCA 90 bp TTCCAAGTGTTCCAGGTATCGGCCAAATTTCTTAATGTACCACAGTaGCGACTCGAATTCAGATGCGTGTACCCTGGACGGCCTTCCGCT +
Preference number: 5 (lower is better)
Translates to: FQVFQVSAKFLNVPQ*RLEFRCVYPGRPSA
Trigger: AGCGGAAGGCCGTCCAGGGTACACGCATCTGAATTCGAGTCGGCACTGTGGTACATTAAGAAATTTGGCCGATACCTGGAACACTTGGAA
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000108504.2
CDS GCA 90 bp GTTCATATTTCATCACCCGCTCAAAGAAGAAGTTCACCTTCAGGTTaGTGGCCTGCCTGGCCAACTTGGCCCAAGACATACCCCAGACTA +
Preference number: 5 (lower is better)
Translates to: VHISSPAQRRSSPSG*WPAWPTWPKTYPRL
Trigger: TAGTCTGGGGTATGTCTTGGGCCAAGTTGGCCAGGCAGGCCAGCAACCTGAAGGTGAACTTCTTCTTTGAGCGGGTGATGAAATATGAAC
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000108504.2
CDS-3UTR CAA 90 bp AACCAGGTTTTCAGGTTCAAAGTGCATCTAGATGTCTTCCTCTGGAGAGCACTCAGATGGTCCAGGTGTTaGCCCATTTTCTTTAAGAAA +
Preference number: 5 (lower is better)
Translates to: NQVFRFKVHLDVFLWRALRWSRC*PIFFKK
Trigger: TTTCTTAAAGAAAATGGGCAAACACCTGGACCATCT...GAGTGCTCTCCAGAGGAAGACATCTAGATGCACTTTGAACCTGAAAACCTGGTT
43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000108504.2
CDS-3UTR CAA 90 bp ACTGAGAACCAGGTTTTCAGGTTCAAAGTGCATCTAGATGTCTTCCTCTGGAGAAAGAAGTCTTCAATGTaGAGCTCTGAAGCCATGTTC +
Preference number: 5 (lower is better)
Translates to: TENQVFRFKVHLDVFLWRKKSSM*SSEAMF
Trigger: GAACATGGCTTCAGAGCTCAACATTGAAGACTTCTT...TCTCCAGAGGAAGACATCTAGATGCACTTTGAACCTGAAAACCTGGTTCTCAGT
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000108504.2
CDS-3UTR CAA 90 bp ACTGAGAACCAGGTTTTCAGGTTCAAAGTGCATCTAGATGTCTTCCTCTGGAGATCCTGTCCTCTTCATTaGTCTCATATCGGTTTGTAT +
Preference number: 5 (lower is better)
Translates to: TENQVFRFKVHLDVFLWRSCPLH*SHIGLY
Trigger: ATACAAACCGATATGAGACAAATGAAGAGGACAGGA...TCTCCAGAGGAAGACATCTAGATGCACTTTGAACCTGAAAACCTGGTTCTCAGT
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000108504.2
CDS CCA 72 bp TCCCAGCCACCAGAAAACACGTCGCAGGCACACATCTaGCAGAGTGGCCCAGCAGCTCTGCTCTTGGAGCTG +
Preference number: 6 (lower is better)
Translates to: SQPPENTSQAHI*QSGPAALLLEL
Trigger: CAGCTCCAAGAGCAGAGCTGCTGGGCCACTCTGCCAGATGTGTGCCTGCGACGTGTTTTCTGGTGGCTGGGA
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000108504.2
CDS CCA 72 bp ACTCGAACGTTAACTTCTGCAGGGTGTTCCGGAAGGTaGGCAGGAGGTCTGTCAGAGTGGGCCGCATGGACC +
Preference number: 6 (lower is better)
Translates to: TRTLTSAGCSGR*AGGLSEWAAWT
Trigger: GGTCCATGCGGCCCACTCTGACAGACCTCCTGCCCACCTTCCGGAACACCCTGCAGAAGTTAACGTTCGAGT
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000108504.2
CDS CAA 72 bp AGCTCCAGGTGTTGGATAGAGAGTGACCGCAGGCGGTaGTTACTCTTGCCCAGGCATGACAGGAGGCCTCGC +
Preference number: 6 (lower is better)
Translates to: SSRCWIESDRRR*LLLPRHDRRPR
Trigger: GCGAGGCCTCCTGTCATGCCTGGGCAAGAGTAACAACCGCCTGCGGTCACTCTCTATCCAACACCTGGAGCT
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000108504.2
CDS CAA 72 bp TGGCATTTGATGTTCATGGTCCGGAGGGTCCCGGCGTaGTTCTCGCTCAAGGTCTCGAGCAGCTCGTCGGAG +
Preference number: 6 (lower is better)
Translates to: WHLMFMVRRVPA*FSLKVSSSSSE
Trigger: CTCCGACGAGCTGCTCGAGACCTTGAGCGAGAACAACGCCGGGACCCTCCGGACCATGAACATCAAATGCCA
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000108504.2
CDS CCA 72 bp ACCAGAAAACACGTCGCAGGCACACATCTGGCAGAGTaGCCCAGCAGCTCTGCTCTTGGAGCTGGGTCACTT +
Preference number: 6 (lower is better)
Translates to: TRKHVAGTHLAE*PSSSALGAGSL
Trigger: AAGTGACCCAGCTCCAAGAGCAGAGCTGCTGGGCCACTCTGCCAGATGTGTGCCTGCGACGTGTTTTCTGGT
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000108504.2
CDS CCA 72 bp AGTTCACCTTCAGGTTGCTGGCCTGCCTGGCCAACTTaGCCCAAGACATACCCCAGACTACCTGACCGTGAG +
Preference number: 6 (lower is better)
Translates to: SSPSGCWPAWPT*PKTYPRLPDRE
Trigger: CTCACGGTCAGGTAGTCTGGGGTATGTCTTGGGCCAAGTTGGCCAGGCAGGCCAGCAACCTGAAGGTGAACT
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000108504.2
CDS TCA 72 bp GGAATGTCAAGTTGCGGAAGGTGGCCATGGCCTTGTTaGACTGGGAGCTGCCATAGACAGCCAGGTGATGGC +
Preference number: 6 (lower is better)
Translates to: GMSSCGRWPWPC*TGSCHRQPGDG
Trigger: GCCATCACCTGGCTGTCTATGGCAGCTCCCAGTTCAACAAGGCCATGGCCACCTTCCGCAACTTGACATTCC
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000108504.2
CDS TCA 72 bp AAGCCATGTTCTCATTCTGCATGTAGCTCAGGGAGTTaGGGATGTGGCAGCCTTGCTCCACTGTCAGCCGGG +
Preference number: 6 (lower is better)
Translates to: KPCSHSACSSGS*GCGSLAPLSAG
Trigger: CCCGGCTGACAGTGGAGCAAGGCTGCCACATCCTCAACTCCCTGAGCTACATGCAGAATGAGAACATGGCTT
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000108504.2
CDS TCA 72 bp AGACTACCTGACCGTGAGGGTCATGAACGTGGCATTTaGTGTTCATGGTCCGGAGGGTCCCGGCGTTGTTCT +
Preference number: 6 (lower is better)
Translates to: RLPDREGHERGI*CSWSGGSRRCS
Trigger: AGAACAACGCCGGGACCCTCCGGACCATGAACATCAAATGCCACGTTCATGACCCTCACGGTCAGGTAGTCT
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000108504.2
CDS GCA 72 bp CGCTCAAAGAAGAAGTTCACCTTCAGGTTGCTGGCCTaGCTGGCCAACTTGGCCCAAGACATACCCCAGACT +
Preference number: 6 (lower is better)
Translates to: RSKKKFTFRLLA*LANLAQDIPQT
Trigger: AGTCTGGGGTATGTCTTGGGCCAAGTTGGCCAGGCAGGCCAGCAACCTGAAGGTGAACTTCTTCTTTGAGCG
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000108504.2
CDS CCA 72 bp GTCCTGTATCGCCAGAGGTCAGCTGAGTACATAATCTaGTTCCACTTTCTGCAGACCAGGGCAGCTCTGGAC +
Preference number: 6 (lower is better)
Translates to: VLYRQRSAEYII*FHFLQTRAALD
Trigger: GTCCAGAGCTGCCCTGGTCTGCAGAAAGTGGAACCAGATTATGTACTCAGCTGACCTCTGGCGATACAGGAC
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000108504.2
CDS CCA 72 bp CTATTTCTCCAGACCAGCCGATCCAGCTCCAGGTGTTaGATAGAGAGTGACCGCAGGCGGTTGTTACTCTTG +
Preference number: 6 (lower is better)
Translates to: LFLQTSRSSSRC*IESDRRRLLLL
Trigger: CAAGAGTAACAACCGCCTGCGGTCACTCTCTATCCAACACCTGGAGCTGGATCGGCTGGTCTGGAGAAATAG
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000108504.2
CDS CCA 72 bp CAAAGAAGAAGTTCACCTTCAGGTTGCTGGCCTGCCTaGCCAACTTGGCCCAAGACATACCCCAGACTACCT +
Preference number: 6 (lower is better)
Translates to: QRRSSPSGCWPA*PTWPKTYPRLP
Trigger: AGGTAGTCTGGGGTATGTCTTGGGCCAAGTTGGCCAGGCAGGCCAGCAACCTGAAGGTGAACTTCTTCTTTG
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000108504.2
CDS TCA 72 bp TACTCTTGCCCAGGCATGACAGGAGGCCTCGCATGGTaGCCTGGAACTTTTTGGTCAAGACGGCATTGTAAG +
Preference number: 6 (lower is better)
Translates to: YSCPGMTGGLAW*PGTFWSRRHCK
Trigger: CTTACAATGCCGTCTTGACCAAAAAGTTCCAGGTCACCATGCGAGGCCTCCTGTCATGCCTGGGCAAGAGTA
53% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000108504.2
CDS TCA 72 bp AGCCTTGCTCCACTGTCAGCCGGGCTCCTTTCAGGCTaGGATGGTCCAGGTGTTTGCCCATTTTCTTTAAGA +
Preference number: 6 (lower is better)
Translates to: SLAPLSAGLLSG*DGPGVCPFSLR
Trigger: TCTTAAAGAAAATGGGCAAACACCTGGACCATCTCAGCCTGAAAGGAGCCCGGCTGACAGTGGAGCAAGGCT
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000108504.2
CDS TCA 72 bp AGGTCTCGAGCAGCTCGTCGGAGATACAGTTGTAGTTaGGGGTTAGGAATGTCAAGTTGCGGAAGGTGGCCA +
Preference number: 6 (lower is better)
Translates to: RSRAARRRYSCS*GLGMSSCGRWP
Trigger: TGGCCACCTTCCGCAACTTGACATTCCTAACCCTCAACTACAACTGTATCTCCGACGAGCTGCTCGAGACCT
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000108504.2
CDS CAA 72 bp TTCATCACCCGCTCAAAGAAGAAGTTCACCTTCAGGTaGCTGGCCTGCCTGGCCAACTTGGCCCAAGACATA +
Preference number: 6 (lower is better)
Translates to: FITRSKKKFTFR*LACLANLAQDI
Trigger: TATGTCTTGGGCCAAGTTGGCCAGGCAGGCCAGCAACCTGAAGGTGAACTTCTTCTTTGAGCGGGTGATGAA
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000108504.2
CDS CAA 90 bp CGTTCATATTTCATCACCCGCTCAAAGAAGAAGTTCACCTTCAGGTaGCTGGCCTGCCTGGCCAACTTGGCCCAAGACATACCCCAGACT +
Preference number: 6 (lower is better)
Translates to: RSYFITRSKKKFTFR*LACLANLAQDIPQT
Trigger: AGTCTGGGGTATGTCTTGGGCCAAGTTGGCCAGGCAGGCCAGCAACCTGAAGGTGAACTTCTTCTTTGAGCGGGTGATGAAATATGAACG
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000108504.2
CDS TCA 72 bp GCTGAACGTGATGGTCCTGTATCGCCAGAGGTCAGCTaGGTACATAATCTGGTTCCACTTTCTGCAGACCAG +
Preference number: 6 (lower is better)
Translates to: AERDGPVSPEVS*VHNLVPLSADQ
Trigger: CTGGTCTGCAGAAAGTGGAACCAGATTATGTACTCAGCTGACCTCTGGCGATACAGGACCATCACGTTCAGC
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000108504.2
CDS GCA 72 bp TTTCTTAATGTACCACAGTGCCGACTCGAATTCAGATaGGTGTACCCTGGACGGCCTTCCGCTGAACGTGAT +
Preference number: 6 (lower is better)
Translates to: FLNVPQCRLEFR*VYPGRPSAERD
Trigger: ATCACGTTCAGCGGAAGGCCGTCCAGGGTACACGCATCTGAATTCGAGTCGGCACTGTGGTACATTAAGAAA
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000108504.2
CDS GCA 72 bp TTCCAGGTATCGGCCAAATTTCTTAATGTACCACAGTaGCGACTCGAATTCAGATGCGTGTACCCTGGACGG +
Preference number: 6 (lower is better)
Translates to: FQVSAKFLNVPQ*RLEFRCVYPGR
Trigger: CCGTCCAGGGTACACGCATCTGAATTCGAGTCGGCACTGTGGTACATTAAGAAATTTGGCCGATACCTGGAA
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000108504.2
CDS TCA 72 bp TTTTGGTCAAGACGGCATTGTAAGGGTTCAGGAACTTaGTTTCCAAGTGTTCCAGGTATCGGCCAAATTTCT +
Preference number: 6 (lower is better)
Translates to: FWSRRHCKGSGT*FPSVPGIGQIS
Trigger: AGAAATTTGGCCGATACCTGGAACACTTGGAAATCAAGTTCCTGAACCCTTACAATGCCGTCTTGACCAAAA
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000108504.2
CDS CAA 72 bp TCCTGTAAATTTCCCGTAGGGTCCTGTCCTCTTCATTaGTCTCATATCGGTTTGTATAAATTCTCACCTTCA +
Preference number: 6 (lower is better)
Translates to: SCKFPVGSCPLH*SHIGLYKFSPS
Trigger: TGAAGGTGAGAATTTATACAAACCGATATGAGACAAATGAAGAGGACAGGACCCTACGGGAAATTTACAGGA
40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000108504.2