RADAR | Search for sensor designs | Human genes | Mouse genes | Code

Pregenerated sensors for FBXO21 (Mus musculus)

Ensembl gene IDs: ENSMUSG00000032898

Ensembl transcript IDs: ENSMUST00000035579.10, ENSMUST00000201611.2, ENSMUST00000202447.4

Found 239 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).

Type Sensor Details
3UTR CCA 90 bp AGCGAGCGGTGTGGTGTGAGGATACACATGCGGCAGGCAGGCGGGTaGGCAAGGCTGGCAGGCGGCCCCCTAAAGCTCCGCTCACTACAG +
Preference number: 1 (lower is better)
Translates to: SERCGVRIHMRQAGG*ARLAGGPLKLRSLQ
Trigger: CTGTAGTGAGCGGAGCTTTAGGGGGCCGCCTGCCAGCCTTGCCCACCCGCCTGCCTGCCGCATGTGTATCCTCACACCACACCGCTCGCT
67% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000035579.10
ENSMUST00000202447.4
3UTR TCA 90 bp GAGGAGCGCACACCATCTAAAGTGGGGAGGCAGCCAGGCTGCTGGTaGAGTGGCTGTCCTGTGCTGACTCCAGGGGCAGCACACGTCCTT +
Preference number: 1 (lower is better)
Translates to: EERTPSKVGRQPGCW*SGCPVLTPGAAHVL
Trigger: AAGGACGTGTGCTGCCCCTGGAGTCAGCACAGGACAGCCACTTCACCAGCAGCCTGGCTGCCTCCCCACTTTAGATGGTGTGCGCTCCTC
62% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000035579.10
ENSMUST00000201611.2
ENSMUST00000202447.4
3UTR GCA 90 bp CGAAGCAGAAACCCAGCAATGGAGACTCCCACCATGCTCCGAGGCTaGTTAGTACTGGGGTGCAAGGGTGTGAGTCCTCGTGGGGCGGGC +
Preference number: 1 (lower is better)
Translates to: RSRNPAMETPTMLRG*LVLGCKGVSPRGAG
Trigger: GCCCGCCCCACGAGGACTCACACCCTTGCACCCCAGTACTAAGCAGCCTCGGAGCATGGTGGGAGTCTCCATTGCTGGGTTTCTGCTTCG
62% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000035579.10
ENSMUST00000202447.4
3UTR TCA 90 bp GGGACAAGCACACGAGCCATGCCACGGGACACGGTGCCTTTCAACTaGTTCACTAGTGTAGCGGAGAGCAACGCTGTCTGTGGCTGGAGG +
Preference number: 1 (lower is better)
Translates to: GTSTRAMPRDTVPFN*FTSVAESNAVCGWR
Trigger: CCTCCAGCCACAGACAGCGTTGCTCTCCGCTACACTAGTGAATCAGTTGAAAGGCACCGTGTCCCGTGGCATGGCTCGTGTGCTTGTCCC
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000035579.10
ENSMUST00000201611.2
ENSMUST00000202447.4
3UTR TCA 90 bp TGCTCCTCACTCACAGACAGCATCAGGCAGAAGCCAAGGGTGACCTaGGGCCAGACCTCATCCAAGAGTCAGCGTCCTGGAGCCTTCAGA +
Preference number: 1 (lower is better)
Translates to: CSSLTDSIRQKPRVT*GQTSSKSQRPGAFR
Trigger: TCTGAAGGCTCCAGGACGCTGACTCTTGGATGAGGTCTGGCCTCAGGTCACCCTTGGCTTCTGCCTGATGCTGTCTGTGAGTGAGGAGCA
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000035579.10
ENSMUST00000202447.4
3UTR TCA 90 bp TCCTGCCCTTCTAGTAACTGCCTCATCCCATCATCCTGGGGCTGGTaGAGGGCAATGGAAGAGGGAGCGCTCATTTGGAGCGAGCGGTGT +
Preference number: 1 (lower is better)
Translates to: SCPSSNCLIPSSWGW*RAMEEGALIWSERC
Trigger: ACACCGCTCGCTCCAAATGAGCGCTCCCTCTTCCATTGCCCTTCACCAGCCCCAGGATGATGGGATGAGGCAGTTACTAGAAGGGCAGGA
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000035579.10
ENSMUST00000202447.4
3UTR GCA 90 bp AGCGTCCTGGAGCCTTCAGACAGGCAGCTTGAAGCCCAGAGCATGTaGTCCGCTTCCCGTAAGCCCAACACTCTCAAAATGGAGGGTCTG +
Preference number: 1 (lower is better)
Translates to: SVLEPSDRQLEAQSM*SASRKPNTLKMEGL
Trigger: CAGACCCTCCATTTTGAGAGTGTTGGGCTTACGGGAAGCGGAGCACATGCTCTGGGCTTCAAGCTGCCTGTCTGAAGGCTCCAGGACGCT
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000035579.10
ENSMUST00000202447.4
3UTR CCA 90 bp GCGGCAGGCCTGACTCAGCGACCTTGTTCCAGAGATGAGGAAATATaGCCCCGACTGACTGTCCAGCGGGAGAGACTGACACAAGGTAGA +
Preference number: 1 (lower is better)
Translates to: AAGLTQRPCSRDEEI*PRLTVQRERLTQGR
Trigger: TCTACCTTGTGTCAGTCTCTCCCGCTGGACAGTCAGTCGGGGCCATATTTCCTCATCTCTGGAACAAGGTCGCTGAGTCAGGCCTGCCGC
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000035579.10
ENSMUST00000202447.4
3UTR TCA 90 bp TTTCCAAATGTAAGTCTGGACCCGCCTCTGACTGGTTCTGCCTGGTaGGGCACAGGCTGGGCAGGAACCTTTTCAGCTGCAAGAGCTTCA +
Preference number: 1 (lower is better)
Translates to: FPNVSLDPPLTGSAW*GTGWAGTFSAARAS
Trigger: TGAAGCTCTTGCAGCTGAAAAGGTTCCTGCCCAGCCTGTGCCTCACCAGGCAGAACCAGTCAGAGGCGGGTCCAGACTTACATTTGGAAA
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000035579.10
ENSMUST00000202447.4
3UTR CCA 90 bp TGTGCTCCGCTTCCCGTAAGCCCAACACTCTCAAAATGGAGGGTCTaGATGTGTGACTCAGGAGTGACAGGGAACATGACACCTGTCTCC +
Preference number: 1 (lower is better)
Translates to: CAPLPVSPTLSKWRV*MCDSGVTGNMTPVS
Trigger: GGAGACAGGTGTCATGTTCCCTGTCACTCCTGAGTCACACATCCAGACCCTCCATTTTGAGAGTGTTGGGCTTACGGGAAGCGGAGCACA
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000035579.10
ENSMUST00000202447.4
3UTR CCA 90 bp CCCAGAGCATGTGCTCCGCTTCCCGTAAGCCCAACACTCTCAAAATaGAGGGTCTGGATGTGTGACTCAGGAGTGACAGGGAACATGACA +
Preference number: 1 (lower is better)
Translates to: PRACAPLPVSPTLSK*RVWMCDSGVTGNMT
Trigger: TGTCATGTTCCCTGTCACTCCTGAGTCACACATCCAGACCCTCCATTTTGAGAGTGTTGGGCTTACGGGAAGCGGAGCACATGCTCTGGG
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000035579.10
ENSMUST00000202447.4
3UTR TCA 90 bp GCTTCCCGTAAGCCCAACACTCTCAAAATGGAGGGTCTGGATGTGTaGCTCAGGAGTGACAGGGAACATGACACCTGTCTCCCCTGGTTA +
Preference number: 1 (lower is better)
Translates to: ASRKPNTLKMEGLDV*LRSDREHDTCLPWL
Trigger: TAACCAGGGGAGACAGGTGTCATGTTCCCTGTCACTCCTGAGTCACACATCCAGACCCTCCATTTTGAGAGTGTTGGGCTTACGGGAAGC
53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000035579.10
ENSMUST00000202447.4
3UTR-3UTR TCA 90 bp CAAGCACACGAGCCATGCCACGGGACACGGTGCCTTTCAACTGATTCACTAGTGGTGGCTGTCCTGTGCTaGCTCCAGGGGCAGCACACG +
Preference number: 2 (lower is better)
Translates to: QAHEPCHGTRCLSTDSLVVAVLC*LQGQHT
Trigger: CGTGTGCTGCCCCTGGAGTCAGCACAGGACAGCCAC...CACTAGTGAATCAGTTGAAAGGCACCGTGTCCCGTGGCATGGCTCGTGTGCTTG
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000035579.10
ENSMUST00000201611.2
ENSMUST00000202447.4
3UTR-3UTR TCA 90 bp TGGGAAGGGGGTGAGAGGACAGAATGTCACACACTGTCACCACGGGACAAGCACCAGCCAGGCTGCTGGTaGAGTGGCTGTCCTGTGCTG +
Preference number: 2 (lower is better)
Translates to: WEGGERTECHTLSPRDKHQPGCW*SGCPVL
Trigger: CAGCACAGGACAGCCACTTCACCAGCAGCCTGGCTG...GTGCTTGTCCCGTGGTGACAGTGTGTGACATTCTGTCCTCTCACCCCCTTCCCA
60% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000035579.10
ENSMUST00000201611.2
ENSMUST00000202447.4
3UTR-3UTR TCA 90 bp TCTGGTAAAGGCTTGCTCCTCACTCACAGACAGCATCAGGCAGAAGCCAAGGGTGTGGCTGTCCTGTGCTaGCTCCAGGGGCAGCACACG +
Preference number: 2 (lower is better)
Translates to: SGKGLLLTHRQHQAEAKGVAVLC*LQGQHT
Trigger: CGTGTGCTGCCCCTGGAGTCAGCACAGGACAGCCAC...ACCCTTGGCTTCTGCCTGATGCTGTCTGTGAGTGAGGAGCAAGCCTTTACCAGA
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000035579.10
ENSMUST00000202447.4
3UTR-3UTR TCA 90 bp CAAGCACACGAGCCATGCCACGGGACACGGTGCCTTTCAACTGATTCACTAGTGCAGCCAGGCTGCTGGTaGAGTGGCTGTCCTGTGCTG +
Preference number: 2 (lower is better)
Translates to: QAHEPCHGTRCLSTDSLVQPGCW*SGCPVL
Trigger: CAGCACAGGACAGCCACTTCACCAGCAGCCTGGCTG...CACTAGTGAATCAGTTGAAAGGCACCGTGTCCCGTGGCATGGCTCGTGTGCTTG
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000035579.10
ENSMUST00000201611.2
ENSMUST00000202447.4
3UTR-3UTR CCA 90 bp AGAGATGAGGAAATATGGCCCCGACTGACTGTCCAGCGGGAGAGACTGACACAAGCACACCATCTAAAGTaGGGAGGCAGCCAGGCTGCT +
Preference number: 2 (lower is better)
Translates to: RDEEIWPRLTVQRERLTQAHHLK*GGSQAA
Trigger: AGCAGCCTGGCTGCCTCCCCACTTTAGATGGTGTGC...TTGTGTCAGTCTCTCCCGCTGGACAGTCAGTCGGGGCCATATTTCCTCATCTCT
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000035579.10
ENSMUST00000201611.2
ENSMUST00000202447.4
3UTR-3UTR TCA 90 bp GGTCAGGGAGGGAAGCCATCTTTCTCAGCTTTGACGTTTCTCTACAGGAAAAAGCAGCCAGGCTGCTGGTaGAGTGGCTGTCCTGTGCTG +
Preference number: 2 (lower is better)
Translates to: GQGGKPSFSALTFLYRKKQPGCW*SGCPVL
Trigger: CAGCACAGGACAGCCACTTCACCAGCAGCCTGGCTG...CTTTTTCCTGTAGAGAAACGTCAAAGCTGAGAAAGATGGCTTCCCTCCCTGACC
54% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000035579.10
ENSMUST00000202447.4
3UTR-3UTR GCA 90 bp GACCTCATCCAAGAGTCAGCGTCCTGGAGCCTTCAGACAGGCAGCTTGAAGCCCCAACAGGCAGAAATGTaGACAGACCCAGTGAGAGAA +
Preference number: 2 (lower is better)
Translates to: DLIQESASWSLQTGSLKPQQAEM*TDPVRE
Trigger: TTCTCTCACTGGGTCTGTGCACATTTCTGCCTGTTG...GGGCTTCAAGCTGCCTGTCTGAAGGCTCCAGGACGCTGACTCTTGGATGAGGTC
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000035579.10
ENSMUST00000202447.4
3UTR-3UTR CCA 90 bp GGTCAGGGAGGGAAGCCATCTTTCTCAGCTTTGACGTTTCTCTACAGGAAAAAGGGACCCGCCTCTGACTaGTTCTGCCTGGTGAGGCAC +
Preference number: 2 (lower is better)
Translates to: GQGGKPSFSALTFLYRKKGPASD*FCLVRH
Trigger: GTGCCTCACCAGGCAGAACCAGTCAGAGGCGGGTCC...CTTTTTCCTGTAGAGAAACGTCAAAGCTGAGAAAGATGGCTTCCCTCCCTGACC
54% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000035579.10
ENSMUST00000202447.4
3UTR-3UTR TCA 90 bp CAAATACCAACTTACACGAGTGATATAGGCTCCCTCAGCCAAACGAAGCCTTCGATGGGACTGCTTGTCTaGGGACCAGGTAGCACCCAC +
Preference number: 2 (lower is better)
Translates to: QIPTYTSDIGSLSQTKPSMGLLV*GPGSTH
Trigger: GTGGGTGCTACCTGGTCCTCAGACAAGCAGTCCCAT...CGAAGGCTTCGTTTGGCTGAGGGAGCCTATATCACTCGTGTAAGTTGGTATTTG
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000035579.10
ENSMUST00000202447.4
3UTR-3UTR CCA 90 bp GGTCAGGGAGGGAAGCCATCTTTCTCAGCTTTGACGTTTCTCTACAGGAAAAAGGCACACCATCTAAAGTaGGGAGGCAGCCAGGCTGCT +
Preference number: 2 (lower is better)
Translates to: GQGGKPSFSALTFLYRKKAHHLK*GGSQAA
Trigger: AGCAGCCTGGCTGCCTCCCCACTTTAGATGGTGTGC...CTTTTTCCTGTAGAGAAACGTCAAAGCTGAGAAAGATGGCTTCCCTCCCTGACC
52% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000035579.10
ENSMUST00000202447.4
3UTR-3UTR TCA 90 bp GGTCAGGGAGGGAAGCCATCTTTCTCAGCTTTGACGTTTCTCTACAGGAAAAAGGAGGGTCTGGATGTGTaGCTCAGGAGTGACAGGGAA +
Preference number: 2 (lower is better)
Translates to: GQGGKPSFSALTFLYRKKEGLDV*LRSDRE
Trigger: TTCCCTGTCACTCCTGAGTCACACATCCAGACCCTC...CTTTTTCCTGTAGAGAAACGTCAAAGCTGAGAAAGATGGCTTCCCTCCCTGACC
51% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000035579.10
ENSMUST00000202447.4
3UTR-3UTR GCA 90 bp AAGAACAGACCCGTTCTCTTGGTTTGGGGACCAGGAGGTACAAGTTTTAAGAGCCCATTGCTGTGCATTTaGTCAGAGAACCAACGTAAC +
Preference number: 2 (lower is better)
Translates to: KNRPVLLVWGPGGTSFKSPLLCI*SENQRN
Trigger: GTTACGTTGGTTCTCTGAGCAAATGCACAGCAATGG...GCTCTTAAAACTTGTACCTCCTGGTCCCCAAACCAAGAGAACGGGTCTGTTCTT
47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000035579.10
ENSMUST00000202447.4
3UTR-3UTR GCA 90 bp GGTCAGGGAGGGAAGCCATCTTTCTCAGCTTTGACGTTTCTCTACAGGAAAAAGGACCGACTTAAGATCTaGTCAGGATACTGGAGTAGA +
Preference number: 2 (lower is better)
Translates to: GQGGKPSFSALTFLYRKKDRLKI*SGYWSR
Trigger: TCTACTCCAGTATCCTGAGCAGATCTTAAGTCGGTC...CTTTTTCCTGTAGAGAAACGTCAAAGCTGAGAAAGATGGCTTCCCTCCCTGACC
47% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000035579.10
ENSMUST00000202447.4
3UTR-3UTR TCA 90 bp CAAATACCAACTTACACGAGTGATATAGGCTCCCTCAGCCAAACGAAGCCTTCGCATCTTTCTCAGCTTTaGCGTTTCTCTACAGGAAAA +
Preference number: 2 (lower is better)
Translates to: QIPTYTSDIGSLSQTKPSHLSQL*RFSTGK
Trigger: TTTTCCTGTAGAGAAACGTCAAAGCTGAGAAAGATG...CGAAGGCTTCGTTTGGCTGAGGGAGCCTATATCACTCGTGTAAGTTGGTATTTG
44% GC, longest homopolymer 4 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000035579.10
ENSMUST00000202447.4
3UTR TCA 72 bp GGCAGCCAGGCTGCTGGTGAAGTGGCTGTCCTGTGCTaGCTCCAGGGGCAGCACACGTCCTTCAGGAATCCT +
Preference number: 3 (lower is better)
Translates to: GSQAAGEVAVLC*LQGQHTSFRNP
Trigger: AGGATTCCTGAAGGACGTGTGCTGCCCCTGGAGTCAGCACAGGACAGCCACTTCACCAGCAGCCTGGCTGCC
62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000035579.10
ENSMUST00000201611.2
ENSMUST00000202447.4
3UTR TCA 72 bp GGCGGCAGGCCTGACTCAGCGACCTTGTTCCAGAGATaGGGAAATATGGCCCCGACTGACTGTCCAGCGGGA +
Preference number: 3 (lower is better)
Translates to: GGRPDSATLFQR*GNMAPTDCPAG
Trigger: TCCCGCTGGACAGTCAGTCGGGGCCATATTTCCTCATCTCTGGAACAAGGTCGCTGAGTCAGGCCTGCCGCC
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000035579.10
ENSMUST00000202447.4
3UTR CCA 72 bp GCCTCATCCCATCATCCTGGGGCTGGTGAAGGGCAATaGAAGAGGGAGCGCTCATTTGGAGCGAGCGGTGTG +
Preference number: 3 (lower is better)
Translates to: ASSHHPGAGEGQ*KRERSFGASGV
Trigger: CACACCGCTCGCTCCAAATGAGCGCTCCCTCTTCCATTGCCCTTCACCAGCCCCAGGATGATGGGATGAGGC
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000035579.10
ENSMUST00000202447.4
3UTR TCA 72 bp GTAAGTCTGGACCCGCCTCTGACTGGTTCTGCCTGGTaGGGCACAGGCTGGGCAGGAACCTTTTCAGCTGCA +
Preference number: 3 (lower is better)
Translates to: VSLDPPLTGSAW*GTGWAGTFSAA
Trigger: TGCAGCTGAAAAGGTTCCTGCCCAGCCTGTGCCTCACCAGGCAGAACCAGTCAGAGGCGGGTCCAGACTTAC
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000035579.10
ENSMUST00000202447.4
3UTR CCA 72 bp GACCTGAGGCCAGACCTCATCCAAGAGTCAGCGTCCTaGAGCCTTCAGACAGGCAGCTTGAAGCCCAGAGCA +
Preference number: 3 (lower is better)
Translates to: DLRPDLIQESAS*SLQTGSLKPRA
Trigger: TGCTCTGGGCTTCAAGCTGCCTGTCTGAAGGCTCCAGGACGCTGACTCTTGGATGAGGTCTGGCCTCAGGTC
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000035579.10
ENSMUST00000202447.4
3UTR TCA 72 bp CTCACAGACAGCATCAGGCAGAAGCCAAGGGTGACCTaGGGCCAGACCTCATCCAAGAGTCAGCGTCCTGGA +
Preference number: 3 (lower is better)
Translates to: LTDSIRQKPRVT*GQTSSKSQRPG
Trigger: TCCAGGACGCTGACTCTTGGATGAGGTCTGGCCTCAGGTCACCCTTGGCTTCTGCCTGATGCTGTCTGTGAG
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000035579.10
ENSMUST00000202447.4
3UTR GCA 72 bp AACCCAGCAATGGAGACTCCCACCATGCTCCGAGGCTaGTTAGTACTGGGGTGCAAGGGTGTGAGTCCTCGT +
Preference number: 3 (lower is better)
Translates to: NPAMETPTMLRG*LVLGCKGVSPR
Trigger: ACGAGGACTCACACCCTTGCACCCCAGTACTAAGCAGCCTCGGAGCATGGTGGGAGTCTCCATTGCTGGGTT
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000035579.10
ENSMUST00000202447.4
3UTR CCA 72 bp TTCACTAGTGTAGCGGAGAGCAACGCTGTCTGTGGCTaGAGGAGCGCACACCATCTAAAGTGGGGAGGCAGC +
Preference number: 3 (lower is better)
Translates to: FTSVAESNAVCG*RSAHHLKWGGS
Trigger: GCTGCCTCCCCACTTTAGATGGTGTGCGCTCCTCCAGCCACAGACAGCGTTGCTCTCCGCTACACTAGTGAA
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000035579.10
ENSMUST00000201611.2
ENSMUST00000202447.4
3UTR GCA 72 bp TCCAAATGTAAGTCTGGACCCGCCTCTGACTGGTTCTaGCTGGTGAGGCACAGGCTGGGCAGGAACCTTTTC +
Preference number: 3 (lower is better)
Translates to: SKCKSGPASDWF*LVRHRLGRNLF
Trigger: GAAAAGGTTCCTGCCCAGCCTGTGCCTCACCAGGCAGAACCAGTCAGAGGCGGGTCCAGACTTACATTTGGA
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000035579.10
ENSMUST00000202447.4
3UTR TCA 72 bp ACACGAGCCATGCCACGGGACACGGTGCCTTTCAACTaGTTCACTAGTGTAGCGGAGAGCAACGCTGTCTGT +
Preference number: 3 (lower is better)
Translates to: TRAMPRDTVPFN*FTSVAESNAVC
Trigger: ACAGACAGCGTTGCTCTCCGCTACACTAGTGAATCAGTTGAAAGGCACCGTGTCCCGTGGCATGGCTCGTGT
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000035579.10
ENSMUST00000201611.2
ENSMUST00000202447.4
3UTR TCA 72 bp TCTAGTAACTGCCTCATCCCATCATCCTGGGGCTGGTaGAGGGCAATGGAAGAGGGAGCGCTCATTTGGAGC +
Preference number: 3 (lower is better)
Translates to: SSNCLIPSSWGW*RAMEEGALIWS
Trigger: GCTCCAAATGAGCGCTCCCTCTTCCATTGCCCTTCACCAGCCCCAGGATGATGGGATGAGGCAGTTACTAGA
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000035579.10
ENSMUST00000202447.4
3UTR GCA 72 bp TCACACACTGTCACCACGGGACAAGCACACGAGCCATaGCACGGGACACGGTGCCTTTCAACTGATTCACTA +
Preference number: 3 (lower is better)
Translates to: SHTVTTGQAHEP*HGTRCLSTDSL
Trigger: TAGTGAATCAGTTGAAAGGCACCGTGTCCCGTGGCATGGCTCGTGTGCTTGTCCCGTGGTGACAGTGTGTGA
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000035579.10
ENSMUST00000201611.2
ENSMUST00000202447.4
3UTR GCA 72 bp GAGCCTTCAGACAGGCAGCTTGAAGCCCAGAGCATGTaGTCCGCTTCCCGTAAGCCCAACACTCTCAAAATG +
Preference number: 3 (lower is better)
Translates to: EPSDRQLEAQSM*SASRKPNTLKM
Trigger: CATTTTGAGAGTGTTGGGCTTACGGGAAGCGGAGCACATGCTCTGGGCTTCAAGCTGCCTGTCTGAAGGCTC
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000035579.10
ENSMUST00000202447.4
3UTR CCA 72 bp CTGACTCAGCGACCTTGTTCCAGAGATGAGGAAATATaGCCCCGACTGACTGTCCAGCGGGAGAGACTGACA +
Preference number: 3 (lower is better)
Translates to: LTQRPCSRDEEI*PRLTVQRERLT
Trigger: TGTCAGTCTCTCCCGCTGGACAGTCAGTCGGGGCCATATTTCCTCATCTCTGGAACAAGGTCGCTGAGTCAG
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000035579.10
ENSMUST00000202447.4
3UTR GCA 72 bp CTGGTGAGGCACAGGCTGGGCAGGAACCTTTTCAGCTaGAAGAGCTTCAAGCTTCCTGCCCTTCTAGTAACT +
Preference number: 3 (lower is better)
Translates to: LVRHRLGRNLFS*KSFKLPALLVT
Trigger: AGTTACTAGAAGGGCAGGAAGCTTGAAGCTCTTGCAGCTGAAAAGGTTCCTGCCCAGCCTGTGCCTCACCAG
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000035579.10
ENSMUST00000202447.4
3UTR TCA 72 bp AAGTACAATCTAACGGAAGGCAGAGGGCGGCAGGCCTaGCTCAGCGACCTTGTTCCAGAGATGAGGAAATAT +
Preference number: 3 (lower is better)
Translates to: KYNLTEGRGRQA*LSDLVPEMRKY
Trigger: ATATTTCCTCATCTCTGGAACAAGGTCGCTGAGTCAGGCCTGCCGCCCTCTGCCTTCCGTTAGATTGTACTT
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000035579.10
ENSMUST00000202447.4
3UTR TCA 72 bp AAGCCCAACACTCTCAAAATGGAGGGTCTGGATGTGTaGCTCAGGAGTGACAGGGAACATGACACCTGTCTC +
Preference number: 3 (lower is better)
Translates to: KPNTLKMEGLDV*LRSDREHDTCL
Trigger: GAGACAGGTGTCATGTTCCCTGTCACTCCTGAGTCACACATCCAGACCCTCCATTTTGAGAGTGTTGGGCTT
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000035579.10
ENSMUST00000202447.4
3UTR GCA 72 bp CAGGAACCTTTTCAGCTGCAAGAGCTTCAAGCTTCCTaGCCTTCTAGTAACTGCCTCATCCCATCATCCTGG +
Preference number: 3 (lower is better)
Translates to: QEPFQLQELQAS*PSSNCLIPSSW
Trigger: CCAGGATGATGGGATGAGGCAGTTACTAGAAGGGCAGGAAGCTTGAAGCTCTTGCAGCTGAAAAGGTTCCTG
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000035579.10
ENSMUST00000202447.4
3UTR CCA 72 bp CTTCCCGTAAGCCCAACACTCTCAAAATGGAGGGTCTaGATGTGTGACTCAGGAGTGACAGGGAACATGACA +
Preference number: 3 (lower is better)
Translates to: LPVSPTLSKWRV*MCDSGVTGNMT
Trigger: TGTCATGTTCCCTGTCACTCCTGAGTCACACATCCAGACCCTCCATTTTGAGAGTGTTGGGCTTACGGGAAG
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000035579.10
ENSMUST00000202447.4
3UTR TCA 72 bp TGTCTCCCCTGGTTAGGCTTCATCAGTTCATTTTCCTaGTCAGAAGAACAGACCCGTTCTCTTGGTTTGGGG +
Preference number: 3 (lower is better)
Translates to: CLPWLGFISSFS*SEEQTRSLGLG
Trigger: CCCCAAACCAAGAGAACGGGTCTGTTCTTCTGATCAGGAAAATGAACTGATGAAGCCTAACCAGGGGAGACA
49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000035579.10
ENSMUST00000202447.4
3UTR CCA 72 bp TTTCCTGATCAGAAGAACAGACCCGTTCTCTTGGTTTaGGGACCAGGAGGTACAAGTTTTAAGAGCCATTTT +
Preference number: 3 (lower is better)
Translates to: FPDQKNRPVLLV*GPGGTSFKSHF
Trigger: AAAATGGCTCTTAAAACTTGTACCTCCTGGTCCCCAAACCAAGAGAACGGGTCTGTTCTTCTGATCAGGAAA
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000035579.10
ENSMUST00000202447.4
3UTR TCA 72 bp AGTGATATAGGCTCCCTCAGCCAAACGAAGCCTTCGTaGAGAAACACATTTAAAAACAGTCTAAGTACATTA +
Preference number: 3 (lower is better)
Translates to: SDIGSLSQTKPS*RNTFKNSLSTL
Trigger: TAATGTACTTAGACTGTTTTTAAATGTGTTTCTTCACGAAGGCTTCGTTTGGCTGAGGGAGCCTATATCACT
39% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000035579.10
ENSMUST00000202447.4
CDS-3UTR CCA 90 bp CACACTGTCACCACGGGACAAGCACACGAGCCATGCCACGGGACACGGTGCCTTGGCGGCGGCAGGTGCTaGACACGCGGCCGATGTCCA +
Preference number: 4 (lower is better)
Translates to: HTVTTGQAHEPCHGTRCLGGGRC*TRGRCP
Trigger: TGGACATCGGCCGCGTGTCCAGCACCTGCCGCCGCC...AAGGCACCGTGTCCCGTGGCATGGCTCGTGTGCTTGTCCCGTGGTGACAGTGTG
67% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000035579.10
ENSMUST00000202447.4
CDS-3UTR TCA 90 bp GGGCAGCACACGTCCTTCAGGAATCCTGGTCCCCTAGAAGGTAGCAGCAGCAGCAGGACTCACCTGCCCTaGAGGTCAGGCTGGGGTGGC +
Preference number: 4 (lower is better)
Translates to: GQHTSFRNPGPLEGSSSSRTHLP*RSGWGG
Trigger: GCCACCCCAGCCTGACCTTCAGGGCAGGTGAGTCCT...GCTGCTGCTGCTACCTTCTAGGGGACCAGGATTCCTGAAGGACGTGTGCTGCCC
63% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000035579.10
ENSMUST00000201611.2
ENSMUST00000202447.4
CDS-3UTR TCA 90 bp CCTGTGCTGACTCCAGGGGCAGCACACGTCCTTCAGGAATCCTGGTCCCCTAGAAGGACTCACCTGCCCTaGAGGTCAGGCTGGGGTGGC +
Preference number: 4 (lower is better)
Translates to: PVLTPGAAHVLQESWSPRRTHLP*RSGWGG
Trigger: GCCACCCCAGCCTGACCTTCAGGGCAGGTGAGTCCT...TCTAGGGGACCAGGATTCCTGAAGGACGTGTGCTGCCCCTGGAGTCAGCACAGG
63% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 3 transcripts:
ENSMUST00000035579.10
ENSMUST00000201611.2
ENSMUST00000202447.4
CDS-3UTR GCA 90 bp CACACTGTCACCACGGGACAAGCACACGAGCCATGCCACGGGACACGGTGCCTTCACCTCACCCGGAACTaGTCCTTCCACACCTGCCCG +
Preference number: 4 (lower is better)
Translates to: HTVTTGQAHEPCHGTRCLHLTRN*SFHTCP
Trigger: CGGGCAGGTGTGGAAGGAGCAGTTCCGGGTGAGGTG...AAGGCACCGTGTCCCGTGGCATGGCTCGTGTGCTTGTCCCGTGGTGACAGTGTG
63% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000035579.10
ENSMUST00000201611.2
ENSMUST00000202447.4
CDS-3UTR GCA 90 bp CTCCAGGGGCAGCACACGTCCTTCAGGAATCCTGGTCCCCTAGAAGGTAGCAGCCACCACGCCGTAGAGTaGTGCCGTCACGTGCTGGCC +
Preference number: 4 (lower is better)
Translates to: LQGQHTSFRNPGPLEGSSHHAVE*CRHVLA
Trigger: GGCCAGCACGTGACGGCAGCACTCTACGGCGTGGTG...GCTGCTACCTTCTAGGGGACCAGGATTCCTGAAGGACGTGTGCTGCCCCTGGAG
63% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000035579.10
ENSMUST00000202447.4
CDS-3UTR CCA 90 bp AGGGATGGGAAGGGGGTGAGAGGACAGAATGTCACACACTGTCACCACGGGACAGGCGGCGGCAGGTGCTaGACACGCGGCCGATGTCCA +
Preference number: 4 (lower is better)
Translates to: RDGKGVRGQNVTHCHHGTGGGRC*TRGRCP
Trigger: TGGACATCGGCCGCGTGTCCAGCACCTGCCGCCGCC...TGTCCCGTGGTGACAGTGTGTGACATTCTGTCCTCTCACCCCCTTCCCATCCCT
63% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000035579.10
ENSMUST00000202447.4
CDS-3UTR CCA 90 bp CACACTGTCACCACGGGACAAGCACACGAGCCATGCCACGGGACACGGTGCCTTAGCAGGAGCTGCACCTaGTCCGGGTACATCGCCAGG +
Preference number: 4 (lower is better)
Translates to: HTVTTGQAHEPCHGTRCLSRSCT*SGYIAR
Trigger: CCTGGCGATGTACCCGGACCAGGTGCAGCTCCTGCT...AAGGCACCGTGTCCCGTGGCATGGCTCGTGTGCTTGTCCCGTGGTGACAGTGTG
63% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000035579.10
ENSMUST00000201611.2
ENSMUST00000202447.4
CDS-3UTR TCA 90 bp CTCCAGGGGCAGCACACGTCCTTCAGGAATCCTGGTCCCCTAGAAGGTAGCAGCTGGGGTGGCGGCTGTTaGTGCCACGGAGGGTTTTGC +
Preference number: 4 (lower is better)
Translates to: LQGQHTSFRNPGPLEGSSWGGGC*CHGGFC
Trigger: GCAAAACCCTCCGTGGCATCAACAGCCGCCACCCCA...GCTGCTACCTTCTAGGGGACCAGGATTCCTGAAGGACGTGTGCTGCCCCTGGAG
62% GC, longest homopolymer 4 nt, total homopolymer stretches 16 nt.
Matches the following 3 transcripts:
ENSMUST00000035579.10
ENSMUST00000201611.2
ENSMUST00000202447.4
CDS-3UTR TCA 90 bp CAGAATGTCACACACTGTCACCACGGGACAAGCACACGAGCCATGCCACGGGACAGGACTCACCTGCCCTaGAGGTCAGGCTGGGGTGGC +
Preference number: 4 (lower is better)
Translates to: QNVTHCHHGTSTRAMPRDRTHLP*RSGWGG
Trigger: GCCACCCCAGCCTGACCTTCAGGGCAGGTGAGTCCT...GTCCCGTGGCATGGCTCGTGTGCTTGTCCCGTGGTGACAGTGTGTGACATTCTG
62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000035579.10
ENSMUST00000201611.2
ENSMUST00000202447.4
CDS-3UTR TCA 90 bp CACTGTCACCACGGGACAAGCACACGAGCCATGCCACGGGACACGGTGCCTTTCAGTGGCTTGGGAAGTTaGCAGGCTCCAGGGGAACCC +
Preference number: 4 (lower is better)
Translates to: HCHHGTSTRAMPRDTVPFSGLGS*QAPGEP
Trigger: GGGTTCCCCTGGAGCCTGTCAACTTCCCAAGCCACT...GAAAGGCACCGTGTCCCGTGGCATGGCTCGTGTGCTTGTCCCGTGGTGACAGTG
62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000035579.10
ENSMUST00000201611.2
ENSMUST00000202447.4
CDS-3UTR GCA 90 bp GTCACCACGGGACAAGCACACGAGCCATGCCACGGGACACGGTGCCTTTCAACTTGCTCCTTCCACACCTaGCCGCTGCTCTGGCACACC +
Preference number: 4 (lower is better)
Translates to: VTTGQAHEPCHGTRCLSTCSFHT*PLLWHT
Trigger: GGTGTGCCAGAGCAGCGGGCAGGTGTGGAAGGAGCA...AGTTGAAAGGCACCGTGTCCCGTGGCATGGCTCGTGTGCTTGTCCCGTGGTGAC
62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000035579.10
ENSMUST00000201611.2
ENSMUST00000202447.4
CDS-3UTR GCA 90 bp AGGAGCGCACACCATCTAAAGTGGGGAGGCAGCCAGGCTGCTGGTGAAGTGGCTCACCTCACCCGGAACTaGTCCTTCCACACCTGCCCG +
Preference number: 4 (lower is better)
Translates to: RSAHHLKWGGSQAAGEVAHLTRN*SFHTCP
Trigger: CGGGCAGGTGTGGAAGGAGCAGTTCCGGGTGAGGTG...AGCCACTTCACCAGCAGCCTGGCTGCCTCCCCACTTTAGATGGTGTGCGCTCCT
62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000035579.10
ENSMUST00000201611.2
ENSMUST00000202447.4
CDS-3UTR CCA 90 bp GGGCAGCACACGTCCTTCAGGAATCCTGGTCCCCTAGAAGGTAGCAGCAGCAGCGCCCCTTCTGCACCTTaGCACCACCGCAGCAGGAAG +
Preference number: 4 (lower is better)
Translates to: GQHTSFRNPGPLEGSSSSAPSAP*HHRSRK
Trigger: CTTCCTGCTGCGGTGGTGCCAAGGTGCAGAAGGGGC...GCTGCTGCTGCTACCTTCTAGGGGACCAGGATTCCTGAAGGACGTGTGCTGCCC
62% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000035579.10
ENSMUST00000202447.4
CDS-3UTR CCA 90 bp AGGAGCGCACACCATCTAAAGTGGGGAGGCAGCCAGGCTGCTGGTGAAGTGGCTGCCCCTTCTGCACCTTaGCACCACCGCAGCAGGAAG +
Preference number: 4 (lower is better)
Translates to: RSAHHLKWGGSQAAGEVAAPSAP*HHRSRK
Trigger: CTTCCTGCTGCGGTGGTGCCAAGGTGCAGAAGGGGC...AGCCACTTCACCAGCAGCCTGGCTGCCTCCCCACTTTAGATGGTGTGCGCTCCT
62% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000035579.10
ENSMUST00000202447.4
CDS-3UTR CCA 90 bp GTCACCACGGGACAAGCACACGAGCCATGCCACGGGACACGGTGCCTTTCAACTAGCAGGAGCTGCACCTaGTCCGGGTACATCGCCAGG +
Preference number: 4 (lower is better)
Translates to: VTTGQAHEPCHGTRCLSTSRSCT*SGYIAR
Trigger: CCTGGCGATGTACCCGGACCAGGTGCAGCTCCTGCT...AGTTGAAAGGCACCGTGTCCCGTGGCATGGCTCGTGTGCTTGTCCCGTGGTGAC
62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000035579.10
ENSMUST00000201611.2
ENSMUST00000202447.4
CDS-3UTR TCA 90 bp CAGAATGTCACACACTGTCACCACGGGACAAGCACACGAGCCATGCCACGGGACTGGGGTGGCGGCTGTTaGTGCCACGGAGGGTTTTGC +
Preference number: 4 (lower is better)
Translates to: QNVTHCHHGTSTRAMPRDWGGGC*CHGGFC
Trigger: GCAAAACCCTCCGTGGCATCAACAGCCGCCACCCCA...GTCCCGTGGCATGGCTCGTGTGCTTGTCCCGTGGTGACAGTGTGTGACATTCTG
61% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000035579.10
ENSMUST00000201611.2
ENSMUST00000202447.4
CDS-3UTR TCA 90 bp TGTCACACACTGTCACCACGGGACAAGCACACGAGCCATGCCACGGGACACGGTAGTGGCTTGGGAAGTTaGCAGGCTCCAGGGGAACCC +
Preference number: 4 (lower is better)
Translates to: CHTLSPRDKHTSHATGHGSGLGS*QAPGEP
Trigger: GGGTTCCCCTGGAGCCTGTCAACTTCCCAAGCCACT...ACCGTGTCCCGTGGCATGGCTCGTGTGCTTGTCCCGTGGTGACAGTGTGTGACA
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000035579.10
ENSMUST00000201611.2
ENSMUST00000202447.4
CDS-3UTR TCA 90 bp GCTGTCTGTGGCTGGAGGAGCGCACACCATCTAAAGTGGGGAGGCAGCCAGGCTGGTCCAAGGAGTCTCTaGGGAGCTGGTAGGACTGGT +
Preference number: 4 (lower is better)
Translates to: AVCGWRSAHHLKWGGSQAGPRSL*GAGRTG
Trigger: ACCAGTCCTACCAGCTCCTCAGAGACTCCTTGGACC...AGCCTGGCTGCCTCCCCACTTTAGATGGTGTGCGCTCCTCCAGCCACAGACAGC
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000035579.10
ENSMUST00000201611.2
ENSMUST00000202447.4
CDS-3UTR CCA 90 bp CAGAATGTCACACACTGTCACCACGGGACAAGCACACGAGCCATGCCACGGGACAAGGTCAGGCTGGGGTaGCGGCTGTTGATGCCACGG +
Preference number: 4 (lower is better)
Translates to: QNVTHCHHGTSTRAMPRDKVRLG*RLLMPR
Trigger: CCGTGGCATCAACAGCCGCCACCCCAGCCTGACCTT...GTCCCGTGGCATGGCTCGTGTGCTTGTCCCGTGGTGACAGTGTGTGACATTCTG
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000035579.10
ENSMUST00000201611.2
ENSMUST00000202447.4
CDS-3UTR CCA 90 bp CACTGTCACCACGGGACAAGCACACGAGCCATGCCACGGGACACGGTGCCTTTCCACCGCAGCAGGAAGTaGCTTGGGAAGTTGACAGGC +
Preference number: 4 (lower is better)
Translates to: HCHHGTSTRAMPRDTVPFHRSRK*LGKLTG
Trigger: GCCTGTCAACTTCCCAAGCCACTTCCTGCTGCGGTG...GAAAGGCACCGTGTCCCGTGGCATGGCTCGTGTGCTTGTCCCGTGGTGACAGTG
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000035579.10
ENSMUST00000201611.2
ENSMUST00000202447.4
CDS-3UTR CCA 90 bp AGGAGCGCACACCATCTAAAGTGGGGAGGCAGCCAGGCTGCTGGTGAAGTGGCTTCCCCTTCTGCACCTTaGCACCACCGCAGCAGGAAG +
Preference number: 4 (lower is better)
Translates to: RSAHHLKWGGSQAAGEVASPSAP*HHRSRK
Trigger: CTTCCTGCTGCGGTGGTGCCAAGGTGCAGAAGGGGA...AGCCACTTCACCAGCAGCCTGGCTGCCTCCCCACTTTAGATGGTGTGCGCTCCT
61% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000201611.2
CDS-3UTR TCA 90 bp AATGTCACACACTGTCACCACGGGACAAGCACACGAGCCATGCCACGGGACACGAGTGGCTTGGGAAGTTaGCAGGCTCCAGGGGAACCC +
Preference number: 4 (lower is better)
Translates to: NVTHCHHGTSTRAMPRDTSGLGS*QAPGEP
Trigger: GGGTTCCCCTGGAGCCTGTCAACTTCCCAAGCCACT...CGTGTCCCGTGGCATGGCTCGTGTGCTTGTCCCGTGGTGACAGTGTGTGACATT
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000035579.10
ENSMUST00000201611.2
ENSMUST00000202447.4
CDS-3UTR TCA 90 bp GTCACCACGGGACAAGCACACGAGCCATGCCACGGGACACGGTGCCTTTCAACTGGTCCAAGGAGTCTCTaGGGAGCTGGTAGGACTGGT +
Preference number: 4 (lower is better)
Translates to: VTTGQAHEPCHGTRCLSTGPRSL*GAGRTG
Trigger: ACCAGTCCTACCAGCTCCTCAGAGACTCCTTGGACC...AGTTGAAAGGCACCGTGTCCCGTGGCATGGCTCGTGTGCTTGTCCCGTGGTGAC
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000035579.10
ENSMUST00000201611.2
ENSMUST00000202447.4
CDS-3UTR GCA 90 bp CCTGTGCTGACTCCAGGGGCAGCACACGTCCTTCAGGAATCCTGGTCCCCTAGACATAGAGGACTCACCTaGCCTGAAGGTCAGGCTGGG +
Preference number: 4 (lower is better)
Translates to: PVLTPGAAHVLQESWSPRHRGLT*PEGQAG
Trigger: CCCAGCCTGACCTTCAGGGCAGGTGAGTCCTCTATG...TCTAGGGGACCAGGATTCCTGAAGGACGTGTGCTGCCCCTGGAGTCAGCACAGG
60% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000035579.10
ENSMUST00000201611.2
ENSMUST00000202447.4
CDS-3UTR GCA 90 bp CAAGCACACGAGCCATGCCACGGGACACGGTGCCTTTCAACTGATTCACTAGTGCACCACGCCGTAGAGTaGTGCCGTCACGTGCTGGCC +
Preference number: 4 (lower is better)
Translates to: QAHEPCHGTRCLSTDSLVHHAVE*CRHVLA
Trigger: GGCCAGCACGTGACGGCAGCACTCTACGGCGTGGTG...CACTAGTGAATCAGTTGAAAGGCACCGTGTCCCGTGGCATGGCTCGTGTGCTTG
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000035579.10
ENSMUST00000202447.4
CDS-3UTR GCA 90 bp CCTGTGCTGACTCCAGGGGCAGCACACGTCCTTCAGGAATCCTGGTCCCCTAGAGGTAGGACTGGTCAATaGCTTCCCTCTTGCCCAGGC +
Preference number: 4 (lower is better)
Translates to: PVLTPGAAHVLQESWSPRGRTGQ*LPSCPG
Trigger: GCCTGGGCAAGAGGGAAGGCATTGACCAGTCCTACC...TCTAGGGGACCAGGATTCCTGAAGGACGTGTGCTGCCCCTGGAGTCAGCACAGG
60% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000035579.10
ENSMUST00000202447.4
CDS-3UTR GCA 90 bp CAGAATGTCACACACTGTCACCACGGGACAAGCACACGAGCCATGCCACGGGACTGGAGGAGCAGGAGCTaGACCTGGTCCGGGTACATC +
Preference number: 4 (lower is better)
Translates to: QNVTHCHHGTSTRAMPRDWRSRS*TWSGYI
Trigger: GATGTACCCGGACCAGGTGCAGCTCCTGCTCCTCCA...GTCCCGTGGCATGGCTCGTGTGCTTGTCCCGTGGTGACAGTGTGTGACATTCTG
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000035579.10
ENSMUST00000201611.2
ENSMUST00000202447.4
CDS-3UTR CCA 90 bp GGGAAGGGGGTGAGAGGACAGAATGTCACACACTGTCACCACGGGACAAGCACAAAGGTCAGGCTGGGGTaGCGGCTGTTGATGCCACGG +
Preference number: 4 (lower is better)
Translates to: GKGVRGQNVTHCHHGTSTKVRLG*RLLMPR
Trigger: CCGTGGCATCAACAGCCGCCACCCCAGCCTGACCTT...TGTGCTTGTCCCGTGGTGACAGTGTGTGACATTCTGTCCTCTCACCCCCTTCCC
60% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000035579.10
ENSMUST00000201611.2
ENSMUST00000202447.4
CDS-3UTR CCA 90 bp CACTGTCACCACGGGACAAGCACACGAGCCATGCCACGGGACACGGTGCCTTTCGTCAAGCACCTTCTCTaGCCAGATGCCCAGGTGGAA +
Preference number: 4 (lower is better)
Translates to: HCHHGTSTRAMPRDTVPFVKHLL*PDAQVE
Trigger: TTCCACCTGGGCATCTGGCCAGAGAAGGTGCTTGAC...GAAAGGCACCGTGTCCCGTGGCATGGCTCGTGTGCTTGTCCCGTGGTGACAGTG
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000035579.10
ENSMUST00000201611.2
3UTR CAA 72 bp GGGCTGGTGAAGGGCAATGGAAGAGGGAGCGCTCATTaGGAGCGAGCGGTGTGGTGTGAGGATACACATGCG +
Preference number: 4 (lower is better)
Translates to: GLVKGNGRGSAH*ERAVWCEDTHA
Trigger: CGCATGTGTATCCTCACACCACACCGCTCGCTCCAAATGAGCGCTCCCTCTTCCATTGCCCTTCACCAGCCC
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000035579.10
ENSMUST00000202447.4
CDS-3UTR GCA 90 bp CAAGCACACGAGCCATGCCACGGGACACGGTGCCTTTCAACTGATTCACTAGTGTGCTCCTTCCACACCTaGCCGCTGCTCTGGCACACC +
Preference number: 4 (lower is better)
Translates to: QAHEPCHGTRCLSTDSLVCSFHT*PLLWHT
Trigger: GGTGTGCCAGAGCAGCGGGCAGGTGTGGAAGGAGCA...CACTAGTGAATCAGTTGAAAGGCACCGTGTCCCGTGGCATGGCTCGTGTGCTTG
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000035579.10
ENSMUST00000201611.2
ENSMUST00000202447.4
CDS-3UTR GCA 90 bp CACACTGTCACCACGGGACAAGCACACGAGCCATGCCACGGGACACGGTGCCTTTGCCACGGAGGGTTTTaGACACAAGCTCCACAATGC +
Preference number: 4 (lower is better)
Translates to: HTVTTGQAHEPCHGTRCLCHGGF*TQAPQC
Trigger: GCATTGTGGAGCTTGTGTGCAAAACCCTCCGTGGCA...AAGGCACCGTGTCCCGTGGCATGGCTCGTGTGCTTGTCCCGTGGTGACAGTGTG
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000035579.10
ENSMUST00000201611.2
ENSMUST00000202447.4
CDS-3UTR GCA 90 bp CCTGTGCTGACTCCAGGGGCAGCACACGTCCTTCAGGAATCCTGGTCCCCTAGATGGGGATTCCTGTTCTaGGGGTCAACACCTGGTGCA +
Preference number: 4 (lower is better)
Translates to: PVLTPGAAHVLQESWSPRWGFLF*GSTPGA
Trigger: TGCACCAGGTGTTGACCCGCAGAACAGGAATCCCCA...TCTAGGGGACCAGGATTCCTGAAGGACGTGTGCTGCCCCTGGAGTCAGCACAGG
59% GC, longest homopolymer 4 nt, total homopolymer stretches 16 nt.
Matches the following 3 transcripts:
ENSMUST00000035579.10
ENSMUST00000201611.2
ENSMUST00000202447.4
CDS-3UTR GCA 90 bp TGGGAAGGGGGTGAGAGGACAGAATGTCACACACTGTCACCACGGGACAAGCACTGGAGGAGCAGGAGCTaGACCTGGTCCGGGTACATC +
Preference number: 4 (lower is better)
Translates to: WEGGERTECHTLSPRDKHWRSRS*TWSGYI
Trigger: GATGTACCCGGACCAGGTGCAGCTCCTGCTCCTCCA...GTGCTTGTCCCGTGGTGACAGTGTGTGACATTCTGTCCTCTCACCCCCTTCCCA
59% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000035579.10
ENSMUST00000201611.2
ENSMUST00000202447.4
CDS-3UTR GCA 90 bp GGGAAGGGGGTGAGAGGACAGAATGTCACACACTGTCACCACGGGACAAGCACATGGAGGAGCAGGAGCTaGACCTGGTCCGGGTACATC +
Preference number: 4 (lower is better)
Translates to: GKGVRGQNVTHCHHGTSTWRSRS*TWSGYI
Trigger: GATGTACCCGGACCAGGTGCAGCTCCTGCTCCTCCA...TGTGCTTGTCCCGTGGTGACAGTGTGTGACATTCTGTCCTCTCACCCCCTTCCC
59% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000035579.10
ENSMUST00000201611.2
ENSMUST00000202447.4
CDS-3UTR GCA 90 bp GTCACCACGGGACAAGCACACGAGCCATGCCACGGGACACGGTGCCTTTCAACTCCTTCTCTGGCCAGATaGCCAGGTGGAAGTAGAGTC +
Preference number: 4 (lower is better)
Translates to: VTTGQAHEPCHGTRCLSTPSLAR*PGGSRV
Trigger: GACTCTACTTCCACCTGGGCATCTGGCCAGAGAAGG...AGTTGAAAGGCACCGTGTCCCGTGGCATGGCTCGTGTGCTTGTCCCGTGGTGAC
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000035579.10
ENSMUST00000201611.2
CDS-3UTR GCA 90 bp CACACTGTCACCACGGGACAAGCACACGAGCCATGCCACGGGACACGGTGCCTTGGTAGGACTGGTCAATaGCTTCCCCTTCTGCACCTT +
Preference number: 4 (lower is better)
Translates to: HTVTTGQAHEPCHGTRCLGRTGQ*LPLLHL
Trigger: AAGGTGCAGAAGGGGAAGGCATTGACCAGTCCTACC...AAGGCACCGTGTCCCGTGGCATGGCTCGTGTGCTTGTCCCGTGGTGACAGTGTG
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000201611.2
CDS-3UTR CCA 90 bp GCTGTCTGTGGCTGGAGGAGCGCACACCATCTAAAGTGGGGAGGCAGCCAGGCTGCTGATGTCGGAGAGTaGGTTGCAGTACTGGTCGAT +
Preference number: 4 (lower is better)
Translates to: AVCGWRSAHHLKWGGSQAADVGE*VAVLVD
Trigger: ATCGACCAGTACTGCAACCCACTCTCCGACATCAGC...AGCCTGGCTGCCTCCCCACTTTAGATGGTGTGCGCTCCTCCAGCCACAGACAGC
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000035579.10
ENSMUST00000201611.2
ENSMUST00000202447.4
CDS-3UTR CCA 90 bp CCTGTGCTGACTCCAGGGGCAGCACACGTCCTTCAGGAATCCTGGTCCCCTAGACAGCAGGAAGTGGCTTaGGAAGTTGACAGGCTCCAG +
Preference number: 4 (lower is better)
Translates to: PVLTPGAAHVLQESWSPRQQEVA*EVDRLQ
Trigger: CTGGAGCCTGTCAACTTCCCAAGCCACTTCCTGCTG...TCTAGGGGACCAGGATTCCTGAAGGACGTGTGCTGCCCCTGGAGTCAGCACAGG
59% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000035579.10
ENSMUST00000201611.2
ENSMUST00000202447.4
CDS-3UTR CCA 90 bp AGGAGCGCACACCATCTAAAGTGGGGAGGCAGCCAGGCTGCTGGTGAAGTGGCTGGTGGAAGTAGAGTCTaGCTTGGAGGAGCAGGAGCT +
Preference number: 4 (lower is better)
Translates to: RSAHHLKWGGSQAAGEVAGGSRV*LGGAGA
Trigger: AGCTCCTGCTCCTCCAAGCCAGACTCTACTTCCACC...AGCCACTTCACCAGCAGCCTGGCTGCCTCCCCACTTTAGATGGTGTGCGCTCCT
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000035579.10
ENSMUST00000201611.2
ENSMUST00000202447.4
CDS-3UTR CCA 90 bp CCTGTGCTGACTCCAGGGGCAGCACACGTCCTTCAGGAATCCTGGTCCCCTAGAGGTGGAAGTAGAGTCTaGCTTGGAGGAGCAGGAGCT +
Preference number: 4 (lower is better)
Translates to: PVLTPGAAHVLQESWSPRGGSRV*LGGAGA
Trigger: AGCTCCTGCTCCTCCAAGCCAGACTCTACTTCCACC...TCTAGGGGACCAGGATTCCTGAAGGACGTGTGCTGCCCCTGGAGTCAGCACAGG
59% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000035579.10
ENSMUST00000201611.2
ENSMUST00000202447.4
CDS-3UTR CCA 90 bp TGTCACACACTGTCACCACGGGACAAGCACACGAGCCATGCCACGGGACACGGTGTCAAGCACCTTCTCTaGCCAGATGCCCAGGTGGAA +
Preference number: 4 (lower is better)
Translates to: CHTLSPRDKHTSHATGHGVKHLL*PDAQVE
Trigger: TTCCACCTGGGCATCTGGCCAGAGAAGGTGCTTGAC...ACCGTGTCCCGTGGCATGGCTCGTGTGCTTGTCCCGTGGTGACAGTGTGTGACA
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000035579.10
ENSMUST00000201611.2
CDS-3UTR TCA 90 bp CAGAATGTCACACACTGTCACCACGGGACAAGCACACGAGCCATGCCACGGGACGGGTGCGAGATTTCCTaGGGCTCCACGTTGTATTCC +
Preference number: 4 (lower is better)
Translates to: QNVTHCHHGTSTRAMPRDGCEIS*GSTLYS
Trigger: GGAATACAACGTGGAGCCTCAGGAAATCTCGCACCC...GTCCCGTGGCATGGCTCGTGTGCTTGTCCCGTGGTGACAGTGTGTGACATTCTG
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000035579.10
ENSMUST00000201611.2
ENSMUST00000202447.4
CDS-3UTR GCA 90 bp CACACTGTCACCACGGGACAAGCACACGAGCCATGCCACGGGACACGGTGCCTTCCATTACAGGGGACGTaGTCTGAAAAGAACCGCTTG +
Preference number: 4 (lower is better)
Translates to: HTVTTGQAHEPCHGTRCLPLQGT*SEKNRL
Trigger: CAAGCGGTTCTTTTCAGAGCACGTCCCCTGTAATGG...AAGGCACCGTGTCCCGTGGCATGGCTCGTGTGCTTGTCCCGTGGTGACAGTGTG
58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000035579.10
ENSMUST00000201611.2
ENSMUST00000202447.4
CDS-3UTR GCA 90 bp TGGGAAGGGGGTGAGAGGACAGAATGTCACACACTGTCACCACGGGACAAGCACCATAGAGGACTCACCTaGCCTGAAGGTCAGGCTGGG +
Preference number: 4 (lower is better)
Translates to: WEGGERTECHTLSPRDKHHRGLT*PEGQAG
Trigger: CCCAGCCTGACCTTCAGGGCAGGTGAGTCCTCTATG...GTGCTTGTCCCGTGGTGACAGTGTGTGACATTCTGTCCTCTCACCCCCTTCCCA
58% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000035579.10
ENSMUST00000201611.2
ENSMUST00000202447.4
CDS-3UTR GCA 90 bp TGTCCTGTGCTGACTCCAGGGGCAGCACACGTCCTTCAGGAATCCTGGTCCCCTTTTCGGATCCACTCATaGCCCATCATGCACGTAGGG +
Preference number: 4 (lower is better)
Translates to: CPVLTPGAAHVLQESWSPFRIHS*PIMHVG
Trigger: CCCTACGTGCATGATGGGGCATGAGTGGATCCGAAA...AGGGGACCAGGATTCCTGAAGGACGTGTGCTGCCCCTGGAGTCAGCACAGGACA
58% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 3 transcripts:
ENSMUST00000035579.10
ENSMUST00000201611.2
ENSMUST00000202447.4
CDS-3UTR CCA 90 bp AGAGATGAGGAAATATGGCCCCGACTGACTGTCCAGCGGGAGAGACTGACACAAAAGGTCAGGCTGGGGTaGCGGCTGTTGATGCCACGG +
Preference number: 4 (lower is better)
Translates to: RDEEIWPRLTVQRERLTQKVRLG*RLLMPR
Trigger: CCGTGGCATCAACAGCCGCCACCCCAGCCTGACCTT...TTGTGTCAGTCTCTCCCGCTGGACAGTCAGTCGGGGCCATATTTCCTCATCTCT
58% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 3 transcripts:
ENSMUST00000035579.10
ENSMUST00000201611.2
ENSMUST00000202447.4
CDS-3UTR CCA 90 bp CCCACCTCCATGCCCTTCTCCAAGTACAATCTAACGGAAGGCAGAGGGCGGCAGCAGCAGGAAGTGGCTTaGGAAGTTGACAGGCTCCAG +
Preference number: 4 (lower is better)
Translates to: PTSMPFSKYNLTEGRGRQQQEVA*EVDRLQ
Trigger: CTGGAGCCTGTCAACTTCCCAAGCCACTTCCTGCTG...CTGCCGCCCTCTGCCTTCCGTTAGATTGTACTTGGAGAAGGGCATGGAGGTGGG
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000035579.10
ENSMUST00000202447.4
CDS-3UTR TCA 90 bp TGTCCTGTGCTGACTCCAGGGGCAGCACACGTCCTTCAGGAATCCTGGTCCCCTATTCCTCTAACCAATTaGCGTAGTCGGTGGGGCTGT +
Preference number: 4 (lower is better)
Translates to: CPVLTPGAAHVLQESWSPIPLTN*RSRWGC
Trigger: ACAGCCCCACCGACTACGTCAATTGGTTAGAGGAAT...AGGGGACCAGGATTCCTGAAGGACGTGTGCTGCCCCTGGAGTCAGCACAGGACA
57% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 3 transcripts:
ENSMUST00000035579.10
ENSMUST00000201611.2
ENSMUST00000202447.4
CDS-3UTR TCA 90 bp TGTCACACACTGTCACCACGGGACAAGCACACGAGCCATGCCACGGGACACGGTATTCCTCTAACCAATTaGCGTAGTCGGTGGGGCTGT +
Preference number: 4 (lower is better)
Translates to: CHTLSPRDKHTSHATGHGIPLTN*RSRWGC
Trigger: ACAGCCCCACCGACTACGTCAATTGGTTAGAGGAAT...ACCGTGTCCCGTGGCATGGCTCGTGTGCTTGTCCCGTGGTGACAGTGTGTGACA
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000035579.10
ENSMUST00000201611.2
ENSMUST00000202447.4
CDS-3UTR TCA 90 bp AGGGTCTGGATGTGTGACTCAGGAGTGACAGGGAACATGACACCTGTCTCCCCTGGTCCAAGGAGTCTCTaGGGAGCTGGTAGGACTGGT +
Preference number: 4 (lower is better)
Translates to: RVWMCDSGVTGNMTPVSPGPRSL*GAGRTG
Trigger: ACCAGTCCTACCAGCTCCTCAGAGACTCCTTGGACC...AGGGGAGACAGGTGTCATGTTCCCTGTCACTCCTGAGTCACACATCCAGACCCT
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000035579.10
ENSMUST00000202447.4
CDS-3UTR TCA 90 bp TGGGAAGGGGGTGAGAGGACAGAATGTCACACACTGTCACCACGGGACAAGCACGGGTGCGAGATTTCCTaGGGCTCCACGTTGTATTCC +
Preference number: 4 (lower is better)
Translates to: WEGGERTECHTLSPRDKHGCEIS*GSTLYS
Trigger: GGAATACAACGTGGAGCCTCAGGAAATCTCGCACCC...GTGCTTGTCCCGTGGTGACAGTGTGTGACATTCTGTCCTCTCACCCCCTTCCCA
57% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000035579.10
ENSMUST00000201611.2
ENSMUST00000202447.4
CDS-3UTR GCA 90 bp CTCCAGGGGCAGCACACGTCCTTCAGGAATCCTGGTCCCCTAGAAGGTAGCAGCCCATTACAGGGGACGTaGTCTGAAAAGAACCGCTTG +
Preference number: 4 (lower is better)
Translates to: LQGQHTSFRNPGPLEGSSPLQGT*SEKNRL
Trigger: CAAGCGGTTCTTTTCAGAGCACGTCCCCTGTAATGG...GCTGCTACCTTCTAGGGGACCAGGATTCCTGAAGGACGTGTGCTGCCCCTGGAG
57% GC, longest homopolymer 4 nt, total homopolymer stretches 16 nt.
Matches the following 3 transcripts:
ENSMUST00000035579.10
ENSMUST00000201611.2
ENSMUST00000202447.4
CDS-3UTR GCA 90 bp TGGCCCCGACTGACTGTCCAGCGGGAGAGACTGACACAAGGTAGATGGAGACAGTGCCACGGAGGGTTTTaGACACAAGCTCCACAATGC +
Preference number: 4 (lower is better)
Translates to: WPRLTVQRERLTQGRWRQCHGGF*TQAPQC
Trigger: GCATTGTGGAGCTTGTGTGCAAAACCCTCCGTGGCA...CTGTCTCCATCTACCTTGTGTCAGTCTCTCCCGCTGGACAGTCAGTCGGGGCCA
57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000035579.10
ENSMUST00000201611.2
ENSMUST00000202447.4
CDS-3UTR GCA 90 bp TGGCCCCGACTGACTGTCCAGCGGGAGAGACTGACACAAGGTAGATGGAGACAGAAAGATGTCCAGGGTTaGCCCTTCTGCACCTTGGCA +
Preference number: 4 (lower is better)
Translates to: WPRLTVQRERLTQGRWRQKDVQG*PFCTLA
Trigger: TGCCAAGGTGCAGAAGGGGCAACCCTGGACATCTTT...CTGTCTCCATCTACCTTGTGTCAGTCTCTCCCGCTGGACAGTCAGTCGGGGCCA
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000035579.10
ENSMUST00000202447.4
CDS-3UTR GCA 90 bp CACACTGTCACCACGGGACAAGCACACGAGCCATGCCACGGGACACGGTGCCTTTCACTGTCAGCTGCTTaGCCTTCCCAAAAGCATCTA +
Preference number: 4 (lower is better)
Translates to: HTVTTGQAHEPCHGTRCLSLSAA*PSQKHL
Trigger: TAGATGCTTTTGGGAAGGGCAAGCAGCTGACAGTGA...AAGGCACCGTGTCCCGTGGCATGGCTCGTGTGCTTGTCCCGTGGTGACAGTGTG
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000035579.10
ENSMUST00000202447.4
CDS-3UTR GCA 90 bp TGGGAAGGGGGTGAGAGGACAGAATGTCACACACTGTCACCACGGGACAAGCACCAATGCCTTCCCTCTTaGCCAGGCTCAGCAAGTTGC +
Preference number: 4 (lower is better)
Translates to: WEGGERTECHTLSPRDKHQCLPS*PGSASC
Trigger: GCAACTTGCTGAGCCTGGGCAAGAGGGAAGGCATTG...GTGCTTGTCCCGTGGTGACAGTGTGTGACATTCTGTCCTCTCACCCCCTTCCCA
57% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000035579.10
ENSMUST00000202447.4
CDS-3UTR GCA 90 bp AGAATGTCACACACTGTCACCACGGGACAAGCACACGAGCCATGCCACGGGACACCTTCTCTGGCCAGATaGCCAGGTGGAAGTAGAGTC +
Preference number: 4 (lower is better)
Translates to: RMSHTVTTGQAHEPCHGTPSLAR*PGGSRV
Trigger: GACTCTACTTCCACCTGGGCATCTGGCCAGAGAAGG...TGTCCCGTGGCATGGCTCGTGTGCTTGTCCCGTGGTGACAGTGTGTGACATTCT
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000035579.10
ENSMUST00000201611.2
CDS-3UTR GCA 90 bp CCCACCTCCATGCCCTTCTCCAAGTACAATCTAACGGAAGGCAGAGGGCGGCAGTTTCGGATCCACTCATaGCCCATCATGCACGTAGGG +
Preference number: 4 (lower is better)
Translates to: PTSMPFSKYNLTEGRGRQFRIHS*PIMHVG
Trigger: CCCTACGTGCATGATGGGGCATGAGTGGATCCGAAA...CTGCCGCCCTCTGCCTTCCGTTAGATTGTACTTGGAGAAGGGCATGGAGGTGGG
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000035579.10
ENSMUST00000202447.4
CDS-3UTR CCA 90 bp GACCTCATCCAAGAGTCAGCGTCCTGGAGCCTTCAGACAGGCAGCTTGAAGCCCGCTGATGTCGGAGAGTaGGTTGCAGTACTGGTCGAT +
Preference number: 4 (lower is better)
Translates to: DLIQESASWSLQTGSLKPADVGE*VAVLVD
Trigger: ATCGACCAGTACTGCAACCCACTCTCCGACATCAGC...GGGCTTCAAGCTGCCTGTCTGAAGGCTCCAGGACGCTGACTCTTGGATGAGGTC
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000035579.10
ENSMUST00000202447.4
CDS-3UTR CCA 90 bp GGGCAGCACACGTCCTTCAGGAATCCTGGTCCCCTAGAAGGTAGCAGCAGCAGCCTCCAGCTCTGCATTTaGGATGTAGTGTGTGCCTGT +
Preference number: 4 (lower is better)
Translates to: GQHTSFRNPGPLEGSSSSLQLCI*DVVCAC
Trigger: ACAGGCACACACTACATCCCAAATGCAGAGCTGGAG...GCTGCTGCTGCTACCTTCTAGGGGACCAGGATTCCTGAAGGACGTGTGCTGCCC
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000035579.10
ENSMUST00000201611.2
ENSMUST00000202447.4
CDS-3UTR TCA 90 bp GGGAAGGGGGTGAGAGGACAGAATGTCACACACTGTCACCACGGGACAAGCACAAGAGCAGAGACATGCTaGTGGGGATTCCTGTTCTGC +
Preference number: 4 (lower is better)
Translates to: GKGVRGQNVTHCHHGTSTRAETC*WGFLFC
Trigger: GCAGAACAGGAATCCCCATCAGCATGTCTCTGCTCT...TGTGCTTGTCCCGTGGTGACAGTGTGTGACATTCTGTCCTCTCACCCCCTTCCC
56% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000035579.10
ENSMUST00000201611.2
ENSMUST00000202447.4
CDS-3UTR GCA 90 bp GGGAAGGGGGTGAGAGGACAGAATGTCACACACTGTCACCACGGGACAAGCACAAAAGATGTCCAGGGTTaGCCCTTCTGCACCTTGGCA +
Preference number: 4 (lower is better)
Translates to: GKGVRGQNVTHCHHGTSTKDVQG*PFCTLA
Trigger: TGCCAAGGTGCAGAAGGGGCAACCCTGGACATCTTT...TGTGCTTGTCCCGTGGTGACAGTGTGTGACATTCTGTCCTCTCACCCCCTTCCC
56% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000035579.10
ENSMUST00000202447.4
CDS-3UTR GCA 90 bp TGTCCTGTGCTGACTCCAGGGGCAGCACACGTCCTTCAGGAATCCTGGTCCCCTTCACTGTCAGCTGCTTaGCCTTCCCAAAAGCATCTA +
Preference number: 4 (lower is better)
Translates to: CPVLTPGAAHVLQESWSPSLSAA*PSQKHL
Trigger: TAGATGCTTTTGGGAAGGGCAAGCAGCTGACAGTGA...AGGGGACCAGGATTCCTGAAGGACGTGTGCTGCCCCTGGAGTCAGCACAGGACA
56% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 2 transcripts:
ENSMUST00000035579.10
ENSMUST00000202447.4
CDS-3UTR GCA 90 bp AGGGATGGGAAGGGGGTGAGAGGACAGAATGTCACACACTGTCACCACGGGACATTTCGGATCCACTCATaGCCCATCATGCACGTAGGG +
Preference number: 4 (lower is better)
Translates to: RDGKGVRGQNVTHCHHGTFRIHS*PIMHVG
Trigger: CCCTACGTGCATGATGGGGCATGAGTGGATCCGAAA...TGTCCCGTGGTGACAGTGTGTGACATTCTGTCCTCTCACCCCCTTCCCATCCCT
56% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000035579.10
ENSMUST00000201611.2
ENSMUST00000202447.4
CDS-3UTR GCA 90 bp AGGGATGGGAAGGGGGTGAGAGGACAGAATGTCACACACTGTCACCACGGGACAACTTCTCTGGCCAGATaGCCAGGTGGAAGTAGAGTC +
Preference number: 4 (lower is better)
Translates to: RDGKGVRGQNVTHCHHGTTSLAR*PGGSRV
Trigger: GACTCTACTTCCACCTGGGCATCTGGCCAGAGAAGT...TGTCCCGTGGTGACAGTGTGTGACATTCTGTCCTCTCACCCCCTTCCCATCCCT
56% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000202447.4
CDS-3UTR CCA 90 bp CAAGCACACGAGCCATGCCACGGGACACGGTGCCTTTCAACTGATTCACTAGTGCAGCAGGAAGTGGCTTaGGAAGTTGACAGGCTCCAG +
Preference number: 4 (lower is better)
Translates to: QAHEPCHGTRCLSTDSLVQQEVA*EVDRLQ
Trigger: CTGGAGCCTGTCAACTTCCCAAGCCACTTCCTGCTG...CACTAGTGAATCAGTTGAAAGGCACCGTGTCCCGTGGCATGGCTCGTGTGCTTG
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000035579.10
ENSMUST00000201611.2
ENSMUST00000202447.4
CDS-3UTR CCA 90 bp TGGCCCCGACTGACTGTCCAGCGGGAGAGACTGACACAAGGTAGATGGAGACAGTCATCACAAGCCCGATaGAGTAGCAGACATCCCTGT +
Preference number: 4 (lower is better)
Translates to: WPRLTVQRERLTQGRWRQSSQAR*SSRHPC
Trigger: ACAGGGATGTCTGCTACTCCATCGGGCTTGTGATGA...CTGTCTCCATCTACCTTGTGTCAGTCTCTCCCGCTGGACAGTCAGTCGGGGCCA
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000035579.10
ENSMUST00000201611.2
ENSMUST00000202447.4
CDS-3UTR TCA 90 bp AGAATGTCACACACTGTCACCACGGGACAAGCACACGAGCCATGCCACGGGACAATTCCTCTAACCAATTaGCGTAGTCGGTGGGGCTGT +
Preference number: 4 (lower is better)
Translates to: RMSHTVTTGQAHEPCHGTIPLTN*RSRWGC
Trigger: ACAGCCCCACCGACTACGTCAATTGGTTAGAGGAAT...TGTCCCGTGGCATGGCTCGTGTGCTTGTCCCGTGGTGACAGTGTGTGACATTCT
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000035579.10
ENSMUST00000201611.2
ENSMUST00000202447.4
CDS-3UTR TCA 90 bp CAGAATGTCACACACTGTCACCACGGGACAAGCACACGAGCCATGCCACGGGACGGTTTTCAATGTCACTaGAGCCATTACAGGGGACGT +
Preference number: 4 (lower is better)
Translates to: QNVTHCHHGTSTRAMPRDGFQCH*SHYRGR
Trigger: ACGTCCCCTGTAATGGCTTCAGTGACATTGAAAACC...GTCCCGTGGCATGGCTCGTGTGCTTGTCCCGTGGTGACAGTGTGTGACATTCTG
54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000035579.10
ENSMUST00000201611.2
ENSMUST00000202447.4
CDS-3UTR TCA 90 bp AATGTCACACACTGTCACCACGGGACAAGCACACGAGCCATGCCACGGGACACGGGTTTTCAATGTCACTaGAGCCATTACAGGGGACGT +
Preference number: 4 (lower is better)
Translates to: NVTHCHHGTSTRAMPRDTGFQCH*SHYRGR
Trigger: ACGTCCCCTGTAATGGCTTCAGTGACATTGAAAACC...CGTGTCCCGTGGCATGGCTCGTGTGCTTGTCCCGTGGTGACAGTGTGTGACATT
54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000035579.10
ENSMUST00000201611.2
ENSMUST00000202447.4
CDS-3UTR TCA 90 bp AAGAACAGACCCGTTCTCTTGGTTTGGGGACCAGGAGGTACAAGTTTTAAGAGCTGGGGTGGCGGCTGTTaGTGCCACGGAGGGTTTTGC +
Preference number: 4 (lower is better)
Translates to: KNRPVLLVWGPGGTSFKSWGGGC*CHGGFC
Trigger: GCAAAACCCTCCGTGGCATCAACAGCCGCCACCCCA...GCTCTTAAAACTTGTACCTCCTGGTCCCCAAACCAAGAGAACGGGTCTGTTCTT
54% GC, longest homopolymer 4 nt, total homopolymer stretches 16 nt.
Matches the following 2 transcripts:
ENSMUST00000035579.10
ENSMUST00000202447.4
CDS-3UTR GCA 90 bp AAGAACAGACCCGTTCTCTTGGTTTGGGGACCAGGAGGTACAAGTTTTAAGAGCCACCTCACCCGGAACTaGTCCTTCCACACCTGCCCG +
Preference number: 4 (lower is better)
Translates to: KNRPVLLVWGPGGTSFKSHLTRN*SFHTCP
Trigger: CGGGCAGGTGTGGAAGGAGCAGTTCCGGGTGAGGTG...GCTCTTAAAACTTGTACCTCCTGGTCCCCAAACCAAGAGAACGGGTCTGTTCTT
54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000035579.10
ENSMUST00000202447.4
CDS-3UTR CCA 90 bp CAAGCACACGAGCCATGCCACGGGACACGGTGCCTTTCAACTGATTCACTAGTGCTGTGGATCTGGGCCTaGATGTCTCTGAAGCTGATG +
Preference number: 4 (lower is better)
Translates to: QAHEPCHGTRCLSTDSLVLWIWA*MSLKLM
Trigger: CATCAGCTTCAGAGACATCCAGGCCCAGATCCACAG...CACTAGTGAATCAGTTGAAAGGCACCGTGTCCCGTGGCATGGCTCGTGTGCTTG
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000035579.10
ENSMUST00000201611.2
ENSMUST00000202447.4
CDS-3UTR CCA 90 bp AGAGATGAGGAAATATGGCCCCGACTGACTGTCCAGCGGGAGAGACTGACACAAGGTGGAAGTAGAGTCTaGCTTGGAGGAGCAGGAGCT +
Preference number: 4 (lower is better)
Translates to: RDEEIWPRLTVQRERLTQGGSRV*LGGAGA
Trigger: AGCTCCTGCTCCTCCAAGCCAGACTCTACTTCCACC...TTGTGTCAGTCTCTCCCGCTGGACAGTCAGTCGGGGCCATATTTCCTCATCTCT
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000035579.10
ENSMUST00000201611.2
ENSMUST00000202447.4
CDS-3UTR CCA 90 bp AGGGATGGGAAGGGGGTGAGAGGACAGAATGTCACACACTGTCACCACGGGACACTCCAGCTCTGCATTTaGGATGTAGTGTGTGCCTGT +
Preference number: 4 (lower is better)
Translates to: RDGKGVRGQNVTHCHHGTLQLCI*DVVCAC
Trigger: ACAGGCACACACTACATCCCAAATGCAGAGCTGGAG...TGTCCCGTGGTGACAGTGTGTGACATTCTGTCCTCTCACCCCCTTCCCATCCCT
54% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000035579.10
ENSMUST00000201611.2
ENSMUST00000202447.4
CDS-3UTR CCA 90 bp TGGGAAGGGGGTGAGAGGACAGAATGTCACACACTGTCACCACGGGACAAGCACCTCCAGCTCTGCATTTaGGATGTAGTGTGTGCCTGT +
Preference number: 4 (lower is better)
Translates to: WEGGERTECHTLSPRDKHLQLCI*DVVCAC
Trigger: ACAGGCACACACTACATCCCAAATGCAGAGCTGGAG...GTGCTTGTCCCGTGGTGACAGTGTGTGACATTCTGTCCTCTCACCCCCTTCCCA
54% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000035579.10
ENSMUST00000201611.2
ENSMUST00000202447.4
CDS-3UTR GCA 90 bp GCTGTCTGTGGCTGGAGGAGCGCACACCATCTAAAGTGGGGAGGCAGCCAGGCTTCTAACCCAGCTTTCTaGCGAACTTTATATTCCTCT +
Preference number: 4 (lower is better)
Translates to: AVCGWRSAHHLKWGGSQASNPAF*RTLYSS
Trigger: AGAGGAATATAAAGTTCGGCAGAAAGCTGGGTTAGA...AGCCTGGCTGCCTCCCCACTTTAGATGGTGTGCGCTCCTCCAGCCACAGACAGC
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000035579.10
ENSMUST00000201611.2
ENSMUST00000202447.4
CDS-3UTR GCA 90 bp CACAGGACAGATGTGCCATTGGCCCAGTGGGTAGTTTTACTTATGGGACTGCTTGGTAGGACTGGTCAATaGCTTCCCTCTTGCCCAGGC +
Preference number: 4 (lower is better)
Translates to: HRTDVPLAQWVVLLMGLLGRTGQ*LPSCPG
Trigger: GCCTGGGCAAGAGGGAAGGCATTGACCAGTCCTACC...AAGCAGTCCCATAAGTAAAACTACCCACTGGGCCAATGGCACATCTGTCCTGTG
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000035579.10
ENSMUST00000202447.4
CDS-3UTR GCA 90 bp CCCACCTCCATGCCCTTCTCCAAGTACAATCTAACGGAAGGCAGAGGGCGGCAGGGCTGTGTCCTCCTTTaGACTGTAAATATTCTGCAC +
Preference number: 4 (lower is better)
Translates to: PTSMPFSKYNLTEGRGRQGCVLL*TVNILH
Trigger: GTGCAGAATATTTACAGTGCAAAGGAGGACACAGCC...CTGCCGCCCTCTGCCTTCCGTTAGATTGTACTTGGAGAAGGGCATGGAGGTGGG
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000035579.10
ENSMUST00000202447.4
CDS-3UTR CCA 90 bp AGAGATGAGGAAATATGGCCCCGACTGACTGTCCAGCGGGAGAGACTGACACAAGCTGATGTCGGAGAGTaGGTTGCAGTACTGGTCGAT +
Preference number: 4 (lower is better)
Translates to: RDEEIWPRLTVQRERLTQADVGE*VAVLVD
Trigger: ATCGACCAGTACTGCAACCCACTCTCCGACATCAGC...TTGTGTCAGTCTCTCCCGCTGGACAGTCAGTCGGGGCCATATTTCCTCATCTCT
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000035579.10
ENSMUST00000201611.2
ENSMUST00000202447.4
CDS-3UTR CCA 90 bp AGAGATGAGGAAATATGGCCCCGACTGACTGTCCAGCGGGAGAGACTGACACAAAGCTCCACAATGCTGTaGATCTGGGCCTGGATGTCT +
Preference number: 4 (lower is better)
Translates to: RDEEIWPRLTVQRERLTQSSTML*IWAWMS
Trigger: AGACATCCAGGCCCAGATCCACAGCATTGTGGAGCT...TTGTGTCAGTCTCTCCCGCTGGACAGTCAGTCGGGGCCATATTTCCTCATCTCT
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000035579.10
ENSMUST00000201611.2
ENSMUST00000202447.4
CDS-3UTR TCA 90 bp AGGGATGGGAAGGGGGTGAGAGGACAGAATGTCACACACTGTCACCACGGGACATCCAGCACTTGGCTCTaGAGTTCTATCTCCATTATC +
Preference number: 4 (lower is better)
Translates to: RDGKGVRGQNVTHCHHGTSSTWL*SSISII
Trigger: GATAATGGAGATAGAACTTCAGAGCCAAGTGCTGGA...TGTCCCGTGGTGACAGTGTGTGACATTCTGTCCTCTCACCCCCTTCCCATCCCT
52% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000035579.10
ENSMUST00000201611.2
ENSMUST00000202447.4
CDS-3UTR GCA 90 bp AGAATGTCACACACTGTCACCACGGGACAAGCACACGAGCCATGCCACGGGACAGGCTGTGTCCTCCTTTaGACTGTAAATATTCTGCAC +
Preference number: 4 (lower is better)
Translates to: RMSHTVTTGQAHEPCHGTGCVLL*TVNILH
Trigger: GTGCAGAATATTTACAGTGCAAAGGAGGACACAGCC...TGTCCCGTGGCATGGCTCGTGTGCTTGTCCCGTGGTGACAGTGTGTGACATTCT
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000035579.10
ENSMUST00000201611.2
ENSMUST00000202447.4
CDS-3UTR CCA 90 bp AATGTCACACACTGTCACCACGGGACAAGCACACGAGCCATGCCACGGGACACGCTGAAAAGAACCGCTTaGAGAAGGAAGCTACAATCT +
Preference number: 4 (lower is better)
Translates to: NVTHCHHGTSTRAMPRDTLKRTA*RRKLQS
Trigger: AGATTGTAGCTTCCTTCTCCAAGCGGTTCTTTTCAG...CGTGTCCCGTGGCATGGCTCGTGTGCTTGTCCCGTGGTGACAGTGTGTGACATT
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000035579.10
ENSMUST00000201611.2
ENSMUST00000202447.4
CDS-3UTR CCA 90 bp CAAATACCAACTTACACGAGTGATATAGGCTCCCTCAGCCAAACGAAGCCTTCGCACCGCAGCAGGAAGTaGCTTGGGAAGTTGACAGGC +
Preference number: 4 (lower is better)
Translates to: QIPTYTSDIGSLSQTKPSHRSRK*LGKLTG
Trigger: GCCTGTCAACTTCCCAAGCCACTTCCTGCTGCGGTG...CGAAGGCTTCGTTTGGCTGAGGGAGCCTATATCACTCGTGTAAGTTGGTATTTG
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000035579.10
ENSMUST00000202447.4
CDS-3UTR TCA 90 bp AGGGTCTGGATGTGTGACTCAGGAGTGACAGGGAACATGACACCTGTCTCCCCTTCCAGCACTTGGCTCTaGAGTTCTATCTCCATTATC +
Preference number: 4 (lower is better)
Translates to: RVWMCDSGVTGNMTPVSPSSTWL*SSISII
Trigger: GATAATGGAGATAGAACTTCAGAGCCAAGTGCTGGA...AGGGGAGACAGGTGTCATGTTCCCTGTCACTCCTGAGTCACACATCCAGACCCT
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000035579.10
ENSMUST00000202447.4
CDS-3UTR TCA 90 bp ACACTCTCAAAATGGAGGGTCTGGATGTGTGACTCAGGAGTGACAGGGAACATGAGAGCAGAGACATGCTaGTGGGGATTCCTGTTCTGC +
Preference number: 4 (lower is better)
Translates to: TLSKWRVWMCDSGVTGNMRAETC*WGFLFC
Trigger: GCAGAACAGGAATCCCCATCAGCATGTCTCTGCTCT...CATGTTCCCTGTCACTCCTGAGTCACACATCCAGACCCTCCATTTTGAGAGTGT
51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000035579.10
ENSMUST00000202447.4
CDS-3UTR GCA 90 bp CAGAATGTCACACACTGTCACCACGGGACAAGCACACGAGCCATGCCACGGGACTCTAACCCAGCTTTCTaGCGAACTTTATATTCCTCT +
Preference number: 4 (lower is better)
Translates to: QNVTHCHHGTSTRAMPRDSNPAF*RTLYSS
Trigger: AGAGGAATATAAAGTTCGGCAGAAAGCTGGGTTAGA...GTCCCGTGGCATGGCTCGTGTGCTTGTCCCGTGGTGACAGTGTGTGACATTCTG
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000035579.10
ENSMUST00000201611.2
ENSMUST00000202447.4
CDS-3UTR GCA 90 bp GCTGTCTGTGGCTGGAGGAGCGCACACCATCTAAAGTGGGGAGGCAGCCAGGCTGTAGAGAATTTTCTTTaGGTAGTATTTCCAGGTCAA +
Preference number: 4 (lower is better)
Translates to: AVCGWRSAHHLKWGGSQAVENFL*VVFPGQ
Trigger: TTGACCTGGAAATACTACGCAAAGAAAATTCTCTAC...AGCCTGGCTGCCTCCCCACTTTAGATGGTGTGCGCTCCTCCAGCCACAGACAGC
51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000035579.10
ENSMUST00000201611.2
ENSMUST00000202447.4
CDS-3UTR GCA 90 bp CACTGTCACCACGGGACAAGCACACGAGCCATGCCACGGGACACGGTGCCTTTCGTAGAGAATTTTCTTTaGGTAGTATTTCCAGGTCAA +
Preference number: 4 (lower is better)
Translates to: HCHHGTSTRAMPRDTVPFVENFL*VVFPGQ
Trigger: TTGACCTGGAAATACTACGCAAAGAAAATTCTCTAC...GAAAGGCACCGTGTCCCGTGGCATGGCTCGTGTGCTTGTCCCGTGGTGACAGTG
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000035579.10
ENSMUST00000201611.2
ENSMUST00000202447.4
CDS-3UTR GCA 90 bp GGTCAGGGAGGGAAGCCATCTTTCTCAGCTTTGACGTTTCTCTACAGGAAAAAGTGGGGATTCCTGTTCTaGGGGTCAACACCTGGTGCA +
Preference number: 4 (lower is better)
Translates to: GQGGKPSFSALTFLYRKKWGFLF*GSTPGA
Trigger: TGCACCAGGTGTTGACCCGCAGAACAGGAATCCCCA...CTTTTTCCTGTAGAGAAACGTCAAAGCTGAGAAAGATGGCTTCCCTCCCTGACC
51% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 2 transcripts:
ENSMUST00000035579.10
ENSMUST00000202447.4
CDS-3UTR GCA 90 bp AAGAACAGACCCGTTCTCTTGGTTTGGGGACCAGGAGGTACAAGTTTTAAGAGCTGGGGATTCCTGTTCTaGGGGTCAACACCTGGTGCA +
Preference number: 4 (lower is better)
Translates to: KNRPVLLVWGPGGTSFKSWGFLF*GSTPGA
Trigger: TGCACCAGGTGTTGACCCGCAGAACAGGAATCCCCA...GCTCTTAAAACTTGTACCTCCTGGTCCCCAAACCAAGAGAACGGGTCTGTTCTT
51% GC, longest homopolymer 4 nt, total homopolymer stretches 16 nt.
Matches the following 2 transcripts:
ENSMUST00000035579.10
ENSMUST00000202447.4
CDS-3UTR GCA 90 bp GGTCAGGGAGGGAAGCCATCTTTCTCAGCTTTGACGTTTCTCTACAGGAAAAAGCAATGCCTTCCCTCTTaGCCAGGCTCAGCAAGTTGC +
Preference number: 4 (lower is better)
Translates to: GQGGKPSFSALTFLYRKKQCLPS*PGSASC
Trigger: GCAACTTGCTGAGCCTGGGCAAGAGGGAAGGCATTG...CTTTTTCCTGTAGAGAAACGTCAAAGCTGAGAAAGATGGCTTCCCTCCCTGACC
51% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000035579.10
ENSMUST00000202447.4
CDS-3UTR GCA 90 bp AGGGTCTGGATGTGTGACTCAGGAGTGACAGGGAACATGACACCTGTCTCCCCTGGCTGTGTCCTCCTTTaGACTGTAAATATTCTGCAC +
Preference number: 4 (lower is better)
Translates to: RVWMCDSGVTGNMTPVSPGCVLL*TVNILH
Trigger: GTGCAGAATATTTACAGTGCAAAGGAGGACACAGCC...AGGGGAGACAGGTGTCATGTTCCCTGTCACTCCTGAGTCACACATCCAGACCCT
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000035579.10
ENSMUST00000202447.4
CDS-3UTR CCA 90 bp ACACTCTCAAAATGGAGGGTCTGGATGTGTGACTCAGGAGTGACAGGGAACATGCTGTGGATCTGGGCCTaGATGTCTCTGAAGCTGATG +
Preference number: 4 (lower is better)
Translates to: TLSKWRVWMCDSGVTGNMLWIWA*MSLKLM
Trigger: CATCAGCTTCAGAGACATCCAGGCCCAGATCCACAG...CATGTTCCCTGTCACTCCTGAGTCACACATCCAGACCCTCCATTTTGAGAGTGT
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000035579.10
ENSMUST00000202447.4
3UTR CAA 72 bp CTCCGCTCACTACAGCAACACAGGACAGATGTGCCATaGGCCCAGTGGGTAGTTTTACTTATGGGACTGCTT +
Preference number: 4 (lower is better)
Translates to: LRSLQQHRTDVP*AQWVVLLMGLL
Trigger: AAGCAGTCCCATAAGTAAAACTACCCACTGGGCCAATGGCACATCTGTCCTGTGTTGCTGTAGTGAGCGGAG
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000035579.10
ENSMUST00000202447.4
CDS-3UTR CCA 90 bp CAAGCACACGAGCCATGCCACGGGACACGGTGCCTTTCAACTGATTCACTAGTGCTGAAAAGAACCGCTTaGAGAAGGAAGCTACAATCT +
Preference number: 4 (lower is better)
Translates to: QAHEPCHGTRCLSTDSLVLKRTA*RRKLQS
Trigger: AGATTGTAGCTTCCTTCTCCAAGCGGTTCTTTTCAG...CACTAGTGAATCAGTTGAAAGGCACCGTGTCCCGTGGCATGGCTCGTGTGCTTG
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000035579.10
ENSMUST00000201611.2
ENSMUST00000202447.4
CDS-3UTR CCA 90 bp AAGAACAGACCCGTTCTCTTGGTTTGGGGACCAGGAGGTACAAGTTTTAAGAGCCTGTGGATCTGGGCCTaGATGTCTCTGAAGCTGATG +
Preference number: 4 (lower is better)
Translates to: KNRPVLLVWGPGGTSFKSLWIWA*MSLKLM
Trigger: CATCAGCTTCAGAGACATCCAGGCCCAGATCCACAG...GCTCTTAAAACTTGTACCTCCTGGTCCCCAAACCAAGAGAACGGGTCTGTTCTT
50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000035579.10
ENSMUST00000202447.4
CDS-3UTR CCA 90 bp GATCAGAAGAACAGACCCGTTCTCTTGGTTTGGGGACCAGGAGGTACAAGTTTTAGCTCCACAATGCTGTaGATCTGGGCCTGGATGTCT +
Preference number: 4 (lower is better)
Translates to: DQKNRPVLLVWGPGGTSFSSTML*IWAWMS
Trigger: AGACATCCAGGCCCAGATCCACAGCATTGTGGAGCT...AAAACTTGTACCTCCTGGTCCCCAAACCAAGAGAACGGGTCTGTTCTTCTGATC
50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000035579.10
ENSMUST00000202447.4
CDS-3UTR CCA 90 bp CAAATACCAACTTACACGAGTGATATAGGCTCCCTCAGCCAAACGAAGCCTTCGAGCTCCACAATGCTGTaGATCTGGGCCTGGATGTCT +
Preference number: 4 (lower is better)
Translates to: QIPTYTSDIGSLSQTKPSSSTML*IWAWMS
Trigger: AGACATCCAGGCCCAGATCCACAGCATTGTGGAGCT...CGAAGGCTTCGTTTGGCTGAGGGAGCCTATATCACTCGTGTAAGTTGGTATTTG
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000035579.10
ENSMUST00000202447.4
CDS-3UTR GCA 90 bp GGTCAGGGAGGGAAGCCATCTTTCTCAGCTTTGACGTTTCTCTACAGGAAAAAGCCATTACAGGGGACGTaGTCTGAAAAGAACCGCTTG +
Preference number: 4 (lower is better)
Translates to: GQGGKPSFSALTFLYRKKPLQGT*SEKNRL
Trigger: CAAGCGGTTCTTTTCAGAGCACGTCCCCTGTAATGG...CTTTTTCCTGTAGAGAAACGTCAAAGCTGAGAAAGATGGCTTCCCTCCCTGACC
49% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 2 transcripts:
ENSMUST00000035579.10
ENSMUST00000202447.4
CDS-3UTR CCA 90 bp TCTGGTAAAGGCTTGCTCCTCACTCACAGACAGCATCAGGCAGAAGCCAAGGGTCTGAAAAGAACCGCTTaGAGAAGGAAGCTACAATCT +
Preference number: 4 (lower is better)
Translates to: SGKGLLLTHRQHQAEAKGLKRTA*RRKLQS
Trigger: AGATTGTAGCTTCCTTCTCCAAGCGGTTCTTTTCAG...ACCCTTGGCTTCTGCCTGATGCTGTCTGTGAGTGAGGAGCAAGCCTTTACCAGA
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000035579.10
ENSMUST00000202447.4
CDS-3UTR CCA 90 bp GATCAGAAGAACAGACCCGTTCTCTTGGTTTGGGGACCAGGAGGTACAAGTTTTTCATCACAAGCCCGATaGAGTAGCAGACATCCCTGT +
Preference number: 4 (lower is better)
Translates to: DQKNRPVLLVWGPGGTSFSSQAR*SSRHPC
Trigger: ACAGGGATGTCTGCTACTCCATCGGGCTTGTGATGA...AAAACTTGTACCTCCTGGTCCCCAAACCAAGAGAACGGGTCTGTTCTTCTGATC
49% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000035579.10
ENSMUST00000202447.4
CDS-3UTR CCA 90 bp AAGAACAGACCCGTTCTCTTGGTTTGGGGACCAGGAGGTACAAGTTTTAAGAGCTCATCACAAGCCCGATaGAGTAGCAGACATCCCTGT +
Preference number: 4 (lower is better)
Translates to: KNRPVLLVWGPGGTSFKSSSQAR*SSRHPC
Trigger: ACAGGGATGTCTGCTACTCCATCGGGCTTGTGATGA...GCTCTTAAAACTTGTACCTCCTGGTCCCCAAACCAAGAGAACGGGTCTGTTCTT
49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000035579.10
ENSMUST00000202447.4
CDS-3UTR GCA 90 bp ACTGGAGTAGATCTTAAAGTTAACCAAGGAGTAGTCATCTTAAAGGAGCAGCTCCATAGAGGACTCACCTaGCCTGAAGGTCAGGCTGGG +
Preference number: 4 (lower is better)
Translates to: TGVDLKVNQGVVILKEQLHRGLT*PEGQAG
Trigger: CCCAGCCTGACCTTCAGGGCAGGTGAGTCCTCTATG...GAGCTGCTCCTTTAAGATGACTACTCCTTGGTTAACTTTAAGATCTACTCCAGT
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000035579.10
ENSMUST00000202447.4
CDS-3UTR TCA 90 bp CAAATACCAACTTACACGAGTGATATAGGCTCCCTCAGCCAAACGAAGCCTTCGTCCAGCACTTGGCTCTaGAGTTCTATCTCCATTATC +
Preference number: 4 (lower is better)
Translates to: QIPTYTSDIGSLSQTKPSSSTWL*SSISII
Trigger: GATAATGGAGATAGAACTTCAGAGCCAAGTGCTGGA...CGAAGGCTTCGTTTGGCTGAGGGAGCCTATATCACTCGTGTAAGTTGGTATTTG
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000035579.10
ENSMUST00000202447.4
CDS-3UTR TCA 90 bp ACTGGAGTAGATCTTAAAGTTAACCAAGGAGTAGTCATCTTAAAGGAGCAGCTCGGGTGCGAGATTTCCTaGGGCTCCACGTTGTATTCC +
Preference number: 4 (lower is better)
Translates to: TGVDLKVNQGVVILKEQLGCEIS*GSTLYS
Trigger: GGAATACAACGTGGAGCCTCAGGAAATCTCGCACCC...GAGCTGCTCCTTTAAGATGACTACTCCTTGGTTAACTTTAAGATCTACTCCAGT
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000035579.10
ENSMUST00000202447.4
CDS-3UTR TCA 90 bp ACTGGAGTAGATCTTAAAGTTAACCAAGGAGTAGTCATCTTAAAGGAGCAGCTCAGAGCAGAGACATGCTaGTGGGGATTCCTGTTCTGC +
Preference number: 4 (lower is better)
Translates to: TGVDLKVNQGVVILKEQLRAETC*WGFLFC
Trigger: GCAGAACAGGAATCCCCATCAGCATGTCTCTGCTCT...GAGCTGCTCCTTTAAGATGACTACTCCTTGGTTAACTTTAAGATCTACTCCAGT
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000035579.10
ENSMUST00000202447.4
CDS-3UTR GCA 90 bp ACTGGAGTAGATCTTAAAGTTAACCAAGGAGTAGTCATCTTAAAGGAGCAGCTCTGCCACGGAGGGTTTTaGACACAAGCTCCACAATGC +
Preference number: 4 (lower is better)
Translates to: TGVDLKVNQGVVILKEQLCHGGF*TQAPQC
Trigger: GCATTGTGGAGCTTGTGTGCAAAACCCTCCGTGGCA...GAGCTGCTCCTTTAAGATGACTACTCCTTGGTTAACTTTAAGATCTACTCCAGT
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000035579.10
ENSMUST00000202447.4
CDS-3UTR GCA 90 bp CACAGGACAGATGTGCCATTGGCCCAGTGGGTAGTTTTACTTATGGGACTGCTTGTAGAGAATTTTCTTTaGGTAGTATTTCCAGGTCAA +
Preference number: 4 (lower is better)
Translates to: HRTDVPLAQWVVLLMGLLVENFL*VVFPGQ
Trigger: TTGACCTGGAAATACTACGCAAAGAAAATTCTCTAC...AAGCAGTCCCATAAGTAAAACTACCCACTGGGCCAATGGCACATCTGTCCTGTG
43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000035579.10
ENSMUST00000202447.4
CDS-3UTR GCA 90 bp ACTGGAGTAGATCTTAAAGTTAACCAAGGAGTAGTCATCTTAAAGGAGCAGCTCTCTAACCCAGCTTTCTaGCGAACTTTATATTCCTCT +
Preference number: 4 (lower is better)
Translates to: TGVDLKVNQGVVILKEQLSNPAF*RTLYSS
Trigger: AGAGGAATATAAAGTTCGGCAGAAAGCTGGGTTAGA...GAGCTGCTCCTTTAAGATGACTACTCCTTGGTTAACTTTAAGATCTACTCCAGT
40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000035579.10
ENSMUST00000202447.4
CDS GCA 90 bp AGCGAGCCGCTGCACAGGATGTACTCCAGCACCTCGCCCGGCAGCTaGACCAGGCAGCTGGGGCCCGTCGCCTCAGCCGCGGCCTCCTCG +
Preference number: 5 (lower is better)
Translates to: SEPLHRMYSSTSPGS*TRQLGPVASAAASS
Trigger: CGAGGAGGCCGCGGCTGAGGCGACGGGCCCCAGCTGCCTGGTGCAGCTGCCGGGCGAGGTGCTGGAGTACATCCTGTGCAGCGGCTCGCT
73% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000035579.10
ENSMUST00000202447.4
CDS CCA 90 bp GGCCACCTCACCCGGAACTGCTCCTTCCACACCTGCCCGCTGCTCTaGCACACCTCGCGCAGGCGGCGGCAGGTGCTGGACACGCGGCCG +
Preference number: 5 (lower is better)
Translates to: GHLTRNCSFHTCPLL*HTSRRRRQVLDTRP
Trigger: CGGCCGCGTGTCCAGCACCTGCCGCCGCCTGCGCGAGGTGTGCCAGAGCAGCGGGCAGGTGTGGAAGGAGCAGTTCCGGGTGAGGTGGCC
73% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000035579.10
ENSMUST00000202447.4
CDS TCA 90 bp GCAGGCGGCGGCAGGTGCTGGACACGCGGCCGATGTCCAGCGCCGTaGGCGAGCCGCTGCACAGGATGTACTCCAGCACCTCGCCCGGCA +
Preference number: 5 (lower is better)
Translates to: AGGGRCWTRGRCPAP*ASRCTGCTPAPRPA
Trigger: TGCCGGGCGAGGTGCTGGAGTACATCCTGTGCAGCGGCTCGCTCACGGCGCTGGACATCGGCCGCGTGTCCAGCACCTGCCGCCGCCTGC
72% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000035579.10
ENSMUST00000202447.4
CDS GCA 90 bp GGGAGGGCCACCTCACCCGGAACTGCTCCTTCCACACCTGCCCGCTaGTCTGGCACACCTCGCGCAGGCGGCGGCAGGTGCTGGACACGC +
Preference number: 5 (lower is better)
Translates to: GRATSPGTAPSTPAR*SGTPRAGGGRCWTR
Trigger: GCGTGTCCAGCACCTGCCGCCGCCTGCGCGAGGTGTGCCAGAGCAGCGGGCAGGTGTGGAAGGAGCAGTTCCGGGTGAGGTGGCCCTCCC
72% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000035579.10
ENSMUST00000202447.4
CDS GCA 90 bp TTCATCAGGGAGGGCCACCTCACCCGGAACTGCTCCTTCCACACCTaGCCGCTGCTCTGGCACACCTCGCGCAGGCGGCGGCAGGTGCTG +
Preference number: 5 (lower is better)
Translates to: FIREGHLTRNCSFHT*PLLWHTSRRRRQVL
Trigger: CAGCACCTGCCGCCGCCTGCGCGAGGTGTGCCAGAGCAGCGGGCAGGTGTGGAAGGAGCAGTTCCGGGTGAGGTGGCCCTCCCTGATGAA
69% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000035579.10
ENSMUST00000202447.4
CDS TCA 90 bp CTTCTGCACCTTGGCACCACCGCAGCAGGAAGTGGCTTGGGAAGTTaGCAGGCTCCAGGGGAACCCCCAGCTGCCGGGCGACGGTCAGGT +
Preference number: 5 (lower is better)
Translates to: LLHLGTTAAGSGLGS*QAPGEPPAAGRRSG
Trigger: ACCTGACCGTCGCCCGGCAGCTGGGGGTTCCCCTGGAGCCTGTCAACTTCCCAAGCCACTTCCTGCTGCGGTGGTGCCAAGGTGCAGAAG
66% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000035579.10
ENSMUST00000201611.2
ENSMUST00000202447.4
CDS-3UTR CAA 90 bp CTGTCCTGTGCTGACTCCAGGGGCAGCACACGTCCTTCAGGAATCCTGGTCCCCCTGGGGTGGCGGCTGTaGATGCCACGGAGGGTTTTG +
Preference number: 5 (lower is better)
Translates to: LSCADSRGSTRPSGILVPLGWRL*MPRRVL
Trigger: CAAAACCCTCCGTGGCATCAACAGCCGCCACCCCAG...GGGGACCAGGATTCCTGAAGGACGTGTGCTGCCCCTGGAGTCAGCACAGGACAG
63% GC, longest homopolymer 5 nt, total homopolymer stretches 17 nt.
Matches the following 3 transcripts:
ENSMUST00000035579.10
ENSMUST00000201611.2
ENSMUST00000202447.4
CDS-3UTR CAA 90 bp CTGTCCTGTGCTGACTCCAGGGGCAGCACACGTCCTTCAGGAATCCTGGTCCCCCCCAGGCTCAGCAAGTaGCCCACCATCCGCTGTAGC +
Preference number: 5 (lower is better)
Translates to: LSCADSRGSTRPSGILVPPRLSK*PTIRCS
Trigger: GCTACAGCGGATGGTGGGCAACTTGCTGAGCCTGGG...GGGGACCAGGATTCCTGAAGGACGTGTGCTGCCCCTGGAGTCAGCACAGGACAG
63% GC, longest homopolymer 7 nt, total homopolymer stretches 11 nt.
Matches the following 2 transcripts:
ENSMUST00000035579.10
ENSMUST00000202447.4
CDS-3UTR CAA 90 bp CTCCAGGGGCAGCACACGTCCTTCAGGAATCCTGGTCCCCTAGAAGGTAGCAGCCTGGGGTGGCGGCTGTaGATGCCACGGAGGGTTTTG +
Preference number: 5 (lower is better)
Translates to: LQGQHTSFRNPGPLEGSSLGWRL*MPRRVL
Trigger: CAAAACCCTCCGTGGCATCAACAGCCGCCACCCCAG...GCTGCTACCTTCTAGGGGACCAGGATTCCTGAAGGACGTGTGCTGCCCCTGGAG
62% GC, longest homopolymer 4 nt, total homopolymer stretches 16 nt.
Matches the following 3 transcripts:
ENSMUST00000035579.10
ENSMUST00000201611.2
ENSMUST00000202447.4
CDS TCA 90 bp GCACCTGGTCCGGGTACATCGCCAGGTACAGGTCCAAGGAGTCTCTaGGGAGCTGGTAGGACTGGTCAATGCCTTCCCTCTTGCCCAGGC +
Preference number: 5 (lower is better)
Translates to: APGPGTSPGTGPRSL*GAGRTGQCLPSCPG
Trigger: GCCTGGGCAAGAGGGAAGGCATTGACCAGTCCTACCAGCTCCTCAGAGACTCCTTGGACCTGTACCTGGCGATGTACCCGGACCAGGTGC
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000035579.10
ENSMUST00000202447.4
CDS-3UTR CAA 90 bp CACTGTCACCACGGGACAAGCACACGAGCCATGCCACGGGACACGGTGCCTTTCCAAAGATGTCCAGGGTaGCCCCTTCTGCACCTTGGC +
Preference number: 5 (lower is better)
Translates to: HCHHGTSTRAMPRDTVPFQRCPG*PLLHLG
Trigger: GCCAAGGTGCAGAAGGGGCAACCCTGGACATCTTTG...GAAAGGCACCGTGTCCCGTGGCATGGCTCGTGTGCTTGTCCCGTGGTGACAGTG
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000035579.10
ENSMUST00000202447.4
CDS-3UTR CAA 90 bp GCTGTCTGTGGCTGGAGGAGCGCACACCATCTAAAGTGGGGAGGCAGCCAGGCTGAAGTAGAGTCTGGCTaGGAGGAGCAGGAGCTGCAC +
Preference number: 5 (lower is better)
Translates to: AVCGWRSAHHLKWGGSQAEVESG*EEQELH
Trigger: GTGCAGCTCCTGCTCCTCCAAGCCAGACTCTACTTC...AGCCTGGCTGCCTCCCCACTTTAGATGGTGTGCGCTCCTCCAGCCACAGACAGC
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000035579.10
ENSMUST00000201611.2
ENSMUST00000202447.4
CDS TCA 90 bp GAACCCCCAGCTGCCGGGCGACGGTCAGGTAGAGCAGAGACATGCTaGTGGGGATTCCTGTTCTGCGGGTCAACACCTGGTGCATGTAGA +
Preference number: 5 (lower is better)
Translates to: EPPAAGRRSGRAETC*WGFLFCGSTPGACR
Trigger: TCTACATGCACCAGGTGTTGACCCGCAGAACAGGAATCCCCATCAGCATGTCTCTGCTCTACCTGACCGTCGCCCGGCAGCTGGGGGTTC
60% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000035579.10
ENSMUST00000201611.2
ENSMUST00000202447.4
CDS-3UTR CAA 90 bp AGGGATGGGAAGGGGGTGAGAGGACAGAATGTCACACACTGTCACCACGGGACACTGGGGTGGCGGCTGTaGATGCCACGGAGGGTTTTG +
Preference number: 5 (lower is better)
Translates to: RDGKGVRGQNVTHCHHGTLGWRL*MPRRVL
Trigger: CAAAACCCTCCGTGGCATCAACAGCCGCCACCCCAG...TGTCCCGTGGTGACAGTGTGTGACATTCTGTCCTCTCACCCCCTTCCCATCCCT
60% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 3 transcripts:
ENSMUST00000035579.10
ENSMUST00000201611.2
ENSMUST00000202447.4
CDS-3UTR CAA 90 bp TGGGAAGGGGGTGAGAGGACAGAATGTCACACACTGTCACCACGGGACAAGCACCCCAGGCTCAGCAAGTaGCCCACCATCCGCTGTAGC +
Preference number: 5 (lower is better)
Translates to: WEGGERTECHTLSPRDKHPRLSK*PTIRCS
Trigger: GCTACAGCGGATGGTGGGCAACTTGCTGAGCCTGGG...GTGCTTGTCCCGTGGTGACAGTGTGTGACATTCTGTCCTCTCACCCCCTTCCCA
60% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000035579.10
ENSMUST00000202447.4
CDS-3UTR CAA 90 bp GTCACCACGGGACAAGCACACGAGCCATGCCACGGGACACGGTGCCTTTCAACTGAAGTAGAGTCTGGCTaGGAGGAGCAGGAGCTGCAC +
Preference number: 5 (lower is better)
Translates to: VTTGQAHEPCHGTRCLSTEVESG*EEQELH
Trigger: GTGCAGCTCCTGCTCCTCCAAGCCAGACTCTACTTC...AGTTGAAAGGCACCGTGTCCCGTGGCATGGCTCGTGTGCTTGTCCCGTGGTGAC
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000035579.10
ENSMUST00000201611.2
ENSMUST00000202447.4
CDS TCA 90 bp GCACCTGGTCCGGGTACATCGCCAGGTACAGGTCCAAGGAGTCTCTaGGGAGCTGGTAGGACTGGTCAATGCCTTCCCCTTCTGCACCTT +
Preference number: 5 (lower is better)
Translates to: APGPGTSPGTGPRSL*GAGRTGQCLPLLHL
Trigger: AAGGTGCAGAAGGGGAAGGCATTGACCAGTCCTACCAGCTCCTCAGAGACTCCTTGGACCTGTACCTGGCGATGTACCCGGACCAGGTGC
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000201611.2
CDS-3UTR CAA 90 bp CACTGTCACCACGGGACAAGCACACGAGCCATGCCACGGGACACGGTGCCTTTCATGCCACGGAGGGTTTaGCACACAAGCTCCACAATG +
Preference number: 5 (lower is better)
Translates to: HCHHGTSTRAMPRDTVPFMPRRV*HTSSTM
Trigger: CATTGTGGAGCTTGTGTGCAAAACCCTCCGTGGCAT...GAAAGGCACCGTGTCCCGTGGCATGGCTCGTGTGCTTGTCCCGTGGTGACAGTG
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000035579.10
ENSMUST00000201611.2
ENSMUST00000202447.4
CDS-3UTR CAA 90 bp CAGAATGTCACACACTGTCACCACGGGACAAGCACACGAGCCATGCCACGGGACCAAAGATGTCCAGGGTaGCCCCTTCTGCACCTTGGC +
Preference number: 5 (lower is better)
Translates to: QNVTHCHHGTSTRAMPRDQRCPG*PLLHLG
Trigger: GCCAAGGTGCAGAAGGGGCAACCCTGGACATCTTTG...GTCCCGTGGCATGGCTCGTGTGCTTGTCCCGTGGTGACAGTGTGTGACATTCTG
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000035579.10
ENSMUST00000202447.4
CDS GCA 90 bp GGTAGGACTGGTCAATGCCTTCCCTCTTGCCCAGGCTCAGCAAGTTaGCCACCATCCGCTGTAGCACCTTCTTCACATTCACCACGCCGT +
Preference number: 5 (lower is better)
Translates to: GRTGQCLPSCPGSAS*PPSAVAPSSHSPRR
Trigger: ACGGCGTGGTGAATGTGAAGAAGGTGCTACAGCGGATGGTGGGCAACTTGCTGAGCCTGGGCAAGAGGGAAGGCATTGACCAGTCCTACC
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000035579.10
ENSMUST00000202447.4
CDS CCA 90 bp CACAAACTCCAGGTCCTCGGGGTACCGGATCTCCAGCTCTGCATTTaGGATGTAGTGTGTGCCTGTGAACTCCGAGAAGTAGCGCCCCAC +
Preference number: 5 (lower is better)
Translates to: HKLQVLGVPDLQLCI*DVVCACELREVAPH
Trigger: GTGGGGCGCTACTTCTCGGAGTTCACAGGCACACACTACATCCCAAATGCAGAGCTGGAGATCCGGTACCCCGAGGACCTGGAGTTTGTG
58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000035579.10
ENSMUST00000201611.2
ENSMUST00000202447.4
CDS-3UTR CAA 90 bp TGTCACACACTGTCACCACGGGACAAGCACACGAGCCATGCCACGGGACACGGTATGCCACGGAGGGTTTaGCACACAAGCTCCACAATG +
Preference number: 5 (lower is better)
Translates to: CHTLSPRDKHTSHATGHGMPRRV*HTSSTM
Trigger: CATTGTGGAGCTTGTGTGCAAAACCCTCCGTGGCAT...ACCGTGTCCCGTGGCATGGCTCGTGTGCTTGTCCCGTGGTGACAGTGTGTGACA
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000035579.10
ENSMUST00000201611.2
ENSMUST00000202447.4
CDS-3UTR CAA 90 bp TGGGAAGGGGGTGAGAGGACAGAATGTCACACACTGTCACCACGGGACAAGCACAAGTGGCTTGGGAAGTaGACAGGCTCCAGGGGAACC +
Preference number: 5 (lower is better)
Translates to: WEGGERTECHTLSPRDKHKWLGK*TGSRGT
Trigger: GGTTCCCCTGGAGCCTGTCAACTTCCCAAGCCACTT...GTGCTTGTCCCGTGGTGACAGTGTGTGACATTCTGTCCTCTCACCCCCTTCCCA
58% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000035579.10
ENSMUST00000201611.2
ENSMUST00000202447.4
CDS-3UTR CAA 90 bp TGGGAAGGGGGTGAGAGGACAGAATGTCACACACTGTCACCACGGGACAAGCACGAAGTAGAGTCTGGCTaGGAGGAGCAGGAGCTGCAC +
Preference number: 5 (lower is better)
Translates to: WEGGERTECHTLSPRDKHEVESG*EEQELH
Trigger: GTGCAGCTCCTGCTCCTCCAAGCCAGACTCTACTTC...GTGCTTGTCCCGTGGTGACAGTGTGTGACATTCTGTCCTCTCACCCCCTTCCCA
58% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000035579.10
ENSMUST00000201611.2
ENSMUST00000202447.4
CDS CCA 90 bp TCCATTATCATAGAGGACTCACCTGCCCTGAAGGTCAGGCTGGGGTaGCGGCTGTTGATGCCACGGAGGGTTTTGCACACAAGCTCCACA +
Preference number: 5 (lower is better)
Translates to: SIIIEDSPALKVRLG*RLLMPRRVLHTSST
Trigger: TGTGGAGCTTGTGTGCAAAACCCTCCGTGGCATCAACAGCCGCCACCCCAGCCTGACCTTCAGGGCAGGTGAGTCCTCTATGATAATGGA
57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000035579.10
ENSMUST00000201611.2
ENSMUST00000202447.4
CDS-3UTR CAA 90 bp GGGCAGCACACGTCCTTCAGGAATCCTGGTCCCCTAGAAGGTAGCAGCAGCAGCTTCACTGTCAGCTGCTaGCCCTTCCCAAAAGCATCT +
Preference number: 5 (lower is better)
Translates to: GQHTSFRNPGPLEGSSSSFTVSC*PFPKAS
Trigger: AGATGCTTTTGGGAAGGGCAAGCAGCTGACAGTGAA...GCTGCTGCTGCTACCTTCTAGGGGACCAGGATTCCTGAAGGACGTGTGCTGCCC
57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000035579.10
ENSMUST00000202447.4
CDS TCA 90 bp GGTACCGGATCTCCAGCTCTGCATTTGGGATGTAGTGTGTGCCTGTaGACTCCGAGAAGTAGCGCCCCACATCTGGGTGCGAGATTTCCT +
Preference number: 5 (lower is better)
Translates to: GTGSPALHLGCSVCL*TPRSSAPHLGARFP
Trigger: AGGAAATCTCGCACCCAGATGTGGGGCGCTACTTCTCGGAGTTCACAGGCACACACTACATCCCAAATGCAGAGCTGGAGATCCGGTACC
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000035579.10
ENSMUST00000201611.2
ENSMUST00000202447.4
CDS GCA 90 bp CTCGTACACAAACTCCAGGTCCTCGGGGTACCGGATCTCCAGCTCTaGATTTGGGATGTAGTGTGTGCCTGTGAACTCCGAGAAGTAGCG +
Preference number: 5 (lower is better)
Translates to: LVHKLQVLGVPDLQL*IWDVVCACELREVA
Trigger: CGCTACTTCTCGGAGTTCACAGGCACACACTACATCCCAAATGCAGAGCTGGAGATCCGGTACCCCGAGGACCTGGAGTTTGTGTACGAG
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000035579.10
ENSMUST00000201611.2
ENSMUST00000202447.4
CDS CCA 90 bp CGGAGGGTTTTGCACACAAGCTCCACAATGCTGTGGATCTGGGCCTaGATGTCTCTGAAGCTGATGTCGGAGAGTGGGTTGCAGTACTGG +
Preference number: 5 (lower is better)
Translates to: RRVLHTSSTMLWIWA*MSLKLMSESGLQYW
Trigger: CCAGTACTGCAACCCACTCTCCGACATCAGCTTCAGAGACATCCAGGCCCAGATCCACAGCATTGTGGAGCTTGTGTGCAAAACCCTCCG
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000035579.10
ENSMUST00000201611.2
ENSMUST00000202447.4
CDS CCA 90 bp ATGCCACGGAGGGTTTTGCACACAAGCTCCACAATGCTGTGGATCTaGGCCTGGATGTCTCTGAAGCTGATGTCGGAGAGTGGGTTGCAG +
Preference number: 5 (lower is better)
Translates to: MPRRVLHTSSTMLWI*AWMSLKLMSESGLQ
Trigger: CTGCAACCCACTCTCCGACATCAGCTTCAGAGACATCCAGGCCCAGATCCACAGCATTGTGGAGCTTGTGTGCAAAACCCTCCGTGGCAT
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000035579.10
ENSMUST00000201611.2
ENSMUST00000202447.4
CDS-3UTR CAA 90 bp CCCACCTCCATGCCCTTCTCCAAGTACAATCTAACGGAAGGCAGAGGGCGGCAGTTCACTGTCAGCTGCTaGCCCTTCCCAAAAGCATCT +
Preference number: 5 (lower is better)
Translates to: PTSMPFSKYNLTEGRGRQFTVSC*PFPKAS
Trigger: AGATGCTTTTGGGAAGGGCAAGCAGCTGACAGTGAA...CTGCCGCCCTCTGCCTTCCGTTAGATTGTACTTGGAGAAGGGCATGGAGGTGGG
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000035579.10
ENSMUST00000202447.4
CDS-3UTR CAA 90 bp GTCACCACGGGACAAGCACACGAGCCATGCCACGGGACACGGTGCCTTTCAACTGTATTCCAGGTTTTCTaGGGCTGCATATCTGCAGGA +
Preference number: 5 (lower is better)
Translates to: VTTGQAHEPCHGTRCLSTVFQVF*GCISAG
Trigger: TCCTGCAGATATGCAGCCCAAGAAAACCTGGAATAC...AGTTGAAAGGCACCGTGTCCCGTGGCATGGCTCGTGTGCTTGTCCCGTGGTGAC
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000035579.10
ENSMUST00000201611.2
ENSMUST00000202447.4
CDS-3UTR CAA 90 bp GTCACCACGGGACAAGCACACGAGCCATGCCACGGGACACGGTGCCTTTCAACTCGGCTGTGTCCTCCTTaGCACTGTAAATATTCTGCA +
Preference number: 5 (lower is better)
Translates to: VTTGQAHEPCHGTRCLSTRLCPP*HCKYSA
Trigger: TGCAGAATATTTACAGTGCAAAGGAGGACACAGCCG...AGTTGAAAGGCACCGTGTCCCGTGGCATGGCTCGTGTGCTTGTCCCGTGGTGAC
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000035579.10
ENSMUST00000201611.2
ENSMUST00000202447.4
CDS-3UTR CAA 90 bp TGTCACACACTGTCACCACGGGACAAGCACACGAGCCATGCCACGGGACACGGTCGGCTGTGTCCTCCTTaGCACTGTAAATATTCTGCA +
Preference number: 5 (lower is better)
Translates to: CHTLSPRDKHTSHATGHGRLCPP*HCKYSA
Trigger: TGCAGAATATTTACAGTGCAAAGGAGGACACAGCCG...ACCGTGTCCCGTGGCATGGCTCGTGTGCTTGTCCCGTGGTGACAGTGTGTGACA
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000035579.10
ENSMUST00000201611.2
ENSMUST00000202447.4
CDS-3UTR CAA 90 bp TCTGGTAAAGGCTTGCTCCTCACTCACAGACAGCATCAGGCAGAAGCCAAGGGTTCAATGCCTTCCCTCTaGCCCAGGCTCAGCAAGTTG +
Preference number: 5 (lower is better)
Translates to: SGKGLLLTHRQHQAEAKGSMPSL*PRLSKL
Trigger: CAACTTGCTGAGCCTGGGCAAGAGGGAAGGCATTGA...ACCCTTGGCTTCTGCCTGATGCTGTCTGTGAGTGAGGAGCAAGCCTTTACCAGA
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000035579.10
ENSMUST00000202447.4
CDS CCA 90 bp TCACACAGTTGTAGCCGTACCTCTTATGCTTCATCACAAGCCCGATaGAGTAGCAGACATCCCTGTGCTTCTCCTCGGAGCGCAGCTTCA +
Preference number: 5 (lower is better)
Translates to: SHSCSRTSYASSQAR*SSRHPCASPRSAAS
Trigger: TGAAGCTGCGCTCCGAGGAGAAGCACAGGGATGTCTGCTACTCCATCGGGCTTGTGATGAAGCATAAGAGGTACGGCTACAACTGTGTGA
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000035579.10
ENSMUST00000201611.2
ENSMUST00000202447.4
CDS CCA 90 bp GATGTAGTGTGTGCCTGTGAACTCCGAGAAGTAGCGCCCCACATCTaGGTGCGAGATTTCCTGAGGCTCCACGTTGTATTCCAGGTTTTC +
Preference number: 5 (lower is better)
Translates to: DVVCACELREVAPHI*VRDFLRLHVVFQVF
Trigger: GAAAACCTGGAATACAACGTGGAGCCTCAGGAAATCTCGCACCCAGATGTGGGGCGCTACTTCTCGGAGTTCACAGGCACACACTACATC
53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000035579.10
ENSMUST00000201611.2
ENSMUST00000202447.4
CDS-3UTR CAA 90 bp CACTGTCACCACGGGACAAGCACACGAGCCATGCCACGGGACACGGTGCCTTTCAGTAGAGAATTTTCTTaGCGTAGTATTTCCAGGTCA +
Preference number: 5 (lower is better)
Translates to: HCHHGTSTRAMPRDTVPFSREFS*RSISRS
Trigger: TGACCTGGAAATACTACGCAAAGAAAATTCTCTACT...GAAAGGCACCGTGTCCCGTGGCATGGCTCGTGTGCTTGTCCCGTGGTGACAGTG
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000035579.10
ENSMUST00000201611.2
ENSMUST00000202447.4
CDS-3UTR CAA 90 bp CACACTGTCACCACGGGACAAGCACACGAGCCATGCCACGGGACACGGTGCCTTAGTAGAGAATTTTCTTaGCGTAGTATTTCCAGGTCA +
Preference number: 5 (lower is better)
Translates to: HTVTTGQAHEPCHGTRCLSREFS*RSISRS
Trigger: TGACCTGGAAATACTACGCAAAGAAAATTCTCTACT...AAGGCACCGTGTCCCGTGGCATGGCTCGTGTGCTTGTCCCGTGGTGACAGTGTG
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000035579.10
ENSMUST00000201611.2
ENSMUST00000202447.4
CDS-3UTR CAA 90 bp GGTCAGGGAGGGAAGCCATCTTTCTCAGCTTTGACGTTTCTCTACAGGAAAAAGAAGTGGCTTGGGAAGTaGACAGGCTCCAGGGGAACC +
Preference number: 5 (lower is better)
Translates to: GQGGKPSFSALTFLYRKKKWLGK*TGSRGT
Trigger: GGTTCCCCTGGAGCCTGTCAACTTCCCAAGCCACTT...CTTTTTCCTGTAGAGAAACGTCAAAGCTGAGAAAGATGGCTTCCCTCCCTGACC
52% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000035579.10
ENSMUST00000202447.4
CDS-3UTR CAA 90 bp CAAGCACACGAGCCATGCCACGGGACACGGTGCCTTTCAACTGATTCACTAGTGCGGCTGTGTCCTCCTTaGCACTGTAAATATTCTGCA +
Preference number: 5 (lower is better)
Translates to: QAHEPCHGTRCLSTDSLVRLCPP*HCKYSA
Trigger: TGCAGAATATTTACAGTGCAAAGGAGGACACAGCCG...CACTAGTGAATCAGTTGAAAGGCACCGTGTCCCGTGGCATGGCTCGTGTGCTTG
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000035579.10
ENSMUST00000201611.2
ENSMUST00000202447.4
CDS-3UTR CAA 90 bp GATCAGAAGAACAGACCCGTTCTCTTGGTTTGGGGACCAGGAGGTACAAGTTTTTCAATGCCTTCCCTCTaGCCCAGGCTCAGCAAGTTG +
Preference number: 5 (lower is better)
Translates to: DQKNRPVLLVWGPGGTSFSMPSL*PRLSKL
Trigger: CAACTTGCTGAGCCTGGGCAAGAGGGAAGGCATTGA...AAAACTTGTACCTCCTGGTCCCCAAACCAAGAGAACGGGTCTGTTCTTCTGATC
51% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000035579.10
ENSMUST00000202447.4
CDS-3UTR CAA 90 bp TCTGGTAAAGGCTTGCTCCTCACTCACAGACAGCATCAGGCAGAAGCCAAGGGTGTATTCCAGGTTTTCTaGGGCTGCATATCTGCAGGA +
Preference number: 5 (lower is better)
Translates to: SGKGLLLTHRQHQAEAKGVFQVF*GCISAG
Trigger: TCCTGCAGATATGCAGCCCAAGAAAACCTGGAATAC...ACCCTTGGCTTCTGCCTGATGCTGTCTGTGAGTGAGGAGCAAGCCTTTACCAGA
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000035579.10
ENSMUST00000202447.4
CDS-3UTR CAA 90 bp AATGTCACACACTGTCACCACGGGACAAGCACACGAGCCATGCCACGGGACACGAGTAGAGAATTTTCTTaGCGTAGTATTTCCAGGTCA +
Preference number: 5 (lower is better)
Translates to: NVTHCHHGTSTRAMPRDTSREFS*RSISRS
Trigger: TGACCTGGAAATACTACGCAAAGAAAATTCTCTACT...CGTGTCCCGTGGCATGGCTCGTGTGCTTGTCCCGTGGTGACAGTGTGTGACATT
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000035579.10
ENSMUST00000201611.2
ENSMUST00000202447.4
CDS GCA 90 bp CGTGCTGGCCAATCAGGTACTCACACTCTTTCACTGTCAGCTGCTTaGCCTTCCCAAAAGCATCTATGTAGATGTAGTCAAAGATGTCCA +
Preference number: 5 (lower is better)
Translates to: RAGQSGTHTLSLSAA*PSQKHLCRCSQRCP
Trigger: TGGACATCTTTGACTACATCTACATAGATGCTTTTGGGAAGGGCAAGCAGCTGACAGTGAAAGAGTGTGAGTACCTGATTGGCCAGCACG
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000035579.10
ENSMUST00000202447.4
CDS-3UTR CAA 90 bp ACTGGAGTAGATCTTAAAGTTAACCAAGGAGTAGTCATCTTAAAGGAGCAGCTCAAGTGGCTTGGGAAGTaGACAGGCTCCAGGGGAACC +
Preference number: 5 (lower is better)
Translates to: TGVDLKVNQGVVILKEQLKWLGK*TGSRGT
Trigger: GGTTCCCCTGGAGCCTGTCAACTTCCCAAGCCACTT...GAGCTGCTCCTTTAAGATGACTACTCCTTGGTTAACTTTAAGATCTACTCCAGT
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000035579.10
ENSMUST00000202447.4
CDS-3UTR CAA 90 bp GGTCAGGGAGGGAAGCCATCTTTCTCAGCTTTGACGTTTCTCTACAGGAAAAAGGTATTCCAGGTTTTCTaGGGCTGCATATCTGCAGGA +
Preference number: 5 (lower is better)
Translates to: GQGGKPSFSALTFLYRKKVFQVF*GCISAG
Trigger: TCCTGCAGATATGCAGCCCAAGAAAACCTGGAATAC...CTTTTTCCTGTAGAGAAACGTCAAAGCTGAGAAAGATGGCTTCCCTCCCTGACC
48% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000035579.10
ENSMUST00000202447.4
CDS GCA 72 bp CTGCACAGGATGTACTCCAGCACCTCGCCCGGCAGCTaGACCAGGCAGCTGGGGCCCGTCGCCTCAGCCGCG +
Preference number: 6 (lower is better)
Translates to: LHRMYSSTSPGS*TRQLGPVASAA
Trigger: CGCGGCTGAGGCGACGGGCCCCAGCTGCCTGGTGCAGCTGCCGGGCGAGGTGCTGGAGTACATCCTGTGCAG
72% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000035579.10
ENSMUST00000202447.4
CDS GCA 72 bp ACCTCACCCGGAACTGCTCCTTCCACACCTGCCCGCTaGTCTGGCACACCTCGCGCAGGCGGCGGCAGGTGC +
Preference number: 6 (lower is better)
Translates to: TSPGTAPSTPAR*SGTPRAGGGRC
Trigger: GCACCTGCCGCCGCCTGCGCGAGGTGTGCCAGAGCAGCGGGCAGGTGTGGAAGGAGCAGTTCCGGGTGAGGT
71% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000035579.10
ENSMUST00000202447.4
CDS GCA 72 bp ACCTCACCCGGAACTGCTCCTTCCACACCTGCCCGCTaGTCTGGCACACCTCGCGCAGGCGGCGGCAGGTGN +
Preference number: 6 (lower is better)
Translates to: TSPGTAPSTPAR*SGTPRAGGGRX
Trigger: NCACCTGCCGCCGCCTGCGCGAGGTGTGCCAGAGCAGCGGGCAGGTGTGGAAGGAGCAGTTCCGGGTGAGGT
69% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000201611.2
CDS TCA 72 bp GGCAGGTGCTGGACACGCGGCCGATGTCCAGCGCCGTaGGCGAGCCGCTGCACAGGATGTACTCCAGCACCT +
Preference number: 6 (lower is better)
Translates to: GRCWTRGRCPAP*ASRCTGCTPAP
Trigger: AGGTGCTGGAGTACATCCTGTGCAGCGGCTCGCTCACGGCGCTGGACATCGGCCGCGTGTCCAGCACCTGCC
68% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000035579.10
ENSMUST00000202447.4
CDS CAA 90 bp CCTTCTGCACCTTGGCACCACCGCAGCAGGAAGTGGCTTGGGAAGTaGACAGGCTCCAGGGGAACCCCCAGCTGCCGGGCGACGGTCAGG +
Preference number: 6 (lower is better)
Translates to: PSAPWHHRSRKWLGK*TGSRGTPSCRATVR
Trigger: CCTGACCGTCGCCCGGCAGCTGGGGGTTCCCCTGGAGCCTGTCAACTTCCCAAGCCACTTCCTGCTGCGGTGGTGCCAAGGTGCAGAAGG
67% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000035579.10
ENSMUST00000201611.2
ENSMUST00000202447.4
CDS GCA 72 bp ACCGCCCCGTGCTGCCCGGGGTCCAGGGTCTGGATGTaGTGGAGGATGTCAAGCACCTTCTCTGGCCAGATG +
Preference number: 6 (lower is better)
Translates to: TAPCCPGSRVWM*WRMSSTFSGQM
Trigger: CATCTGGCCAGAGAAGGTGCTTGACATCCTCCAGCACATCCAGACCCTGGACCCCGGGCAGCACGGGGCGGT
65% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000035579.10
ENSMUST00000201611.2
CDS CCA 72 bp GCCCCTTCTGCACCTTGGCACCACCGCAGCAGGAAGTaGCTTGGGAAGTTGACAGGCTCCAGGGGAACCCCC +
Preference number: 6 (lower is better)
Translates to: APSAPWHHRSRK*LGKLTGSRGTP
Trigger: GGGGGTTCCCCTGGAGCCTGTCAACTTCCCAAGCCACTTCCTGCTGCGGTGGTGCCAAGGTGCAGAAGGGGC
65% GC, longest homopolymer 5 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000035579.10
ENSMUST00000202447.4
CDS CCA 72 bp TCCCCTTCTGCACCTTGGCACCACCGCAGCAGGAAGTaGCTTGGGAAGTTGACAGGCTCCAGGGGAACCCCC +
Preference number: 6 (lower is better)
Translates to: SPSAPWHHRSRK*LGKLTGSRGTP
Trigger: GGGGGTTCCCCTGGAGCCTGTCAACTTCCCAAGCCACTTCCTGCTGCGGTGGTGCCAAGGTGCAGAAGGGGA
64% GC, longest homopolymer 5 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000201611.2
CDS GCA 72 bp ACCGCCCCGTGCTGCCCGGGGTCCAGGGTCTGGATGTaGTGGAGGATGTCAAGCACCTTCAAGACAAGACAG +
Preference number: 6 (lower is better)
Translates to: TAPCCPGSRVWM*WRMSSTFKTRQ
Trigger: CTGTCTTGTCTTGAAGGTGCTTGACATCCTCCAGCACATCCAGACCCTGGACCCCGGGCAGCACGGGGCGGT
62% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000202447.4
CDS TCA 72 bp GCTGCCGGGCGACGGTCAGGTAGAGCAGAGACATGCTaGTGGGGATTCCTGTTCTGCGGGTCAACACCTGGT +
Preference number: 6 (lower is better)
Translates to: AAGRRSGRAETC*WGFLFCGSTPG
Trigger: ACCAGGTGTTGACCCGCAGAACAGGAATCCCCATCAGCATGTCTCTGCTCTACCTGACCGTCGCCCGGCAGC
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000035579.10
ENSMUST00000201611.2
ENSMUST00000202447.4
CDS GCA 72 bp GAGGAGCTGGTAGGACTGGTCAATGCCTTCCCCTTCTaGACCTTGGCACCACCGCAGCAGGAAGTGGCTTGG +
Preference number: 6 (lower is better)
Translates to: EELVGLVNAFPF*TLAPPQQEVAW
Trigger: CCAAGCCACTTCCTGCTGCGGTGGTGCCAAGGTGCAGAAGGGGAAGGCATTGACCAGTCCTACCAGCTCCTC
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000201611.2
CDS CAA 72 bp AGGCTGGGGTGGCGGCTGTTGATGCCACGGAGGGTTTaGCACACAAGCTCCACAATGCTGTGGATCTGGGCC +
Preference number: 6 (lower is better)
Translates to: RLGWRLLMPRRV*HTSSTMLWIWA
Trigger: GGCCCAGATCCACAGCATTGTGGAGCTTGTGTGCAAAACCCTCCGTGGCATCAACAGCCGCCACCCCAGCCT
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000035579.10
ENSMUST00000201611.2
ENSMUST00000202447.4
CDS CAA 72 bp TCACCTGCCCTGAAGGTCAGGCTGGGGTGGCGGCTGTaGATGCCACGGAGGGTTTTGCACACAAGCTCCACA +
Preference number: 6 (lower is better)
Translates to: SPALKVRLGWRL*MPRRVLHTSST
Trigger: TGTGGAGCTTGTGTGCAAAACCCTCCGTGGCATCAACAGCCGCCACCCCAGCCTGACCTTCAGGGCAGGTGA
61% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000035579.10
ENSMUST00000201611.2
ENSMUST00000202447.4
CDS CCA 72 bp ATAGAGGACTCACCTGCCCTGAAGGTCAGGCTGGGGTaGCGGCTGTTGATGCCACGGAGGGTTTTGCACACA +
Preference number: 6 (lower is better)
Translates to: IEDSPALKVRLG*RLLMPRRVLHT
Trigger: TGTGTGCAAAACCCTCCGTGGCATCAACAGCCGCCACCCCAGCCTGACCTTCAGGGCAGGTGAGTCCTCTAT
60% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000035579.10
ENSMUST00000201611.2
ENSMUST00000202447.4
CDS CAA 90 bp CTGAAGGTCAGGCTGGGGTGGCGGCTGTTGATGCCACGGAGGGTTTaGCACACAAGCTCCACAATGCTGTGGATCTGGGCCTGGATGTCT +
Preference number: 6 (lower is better)
Translates to: LKVRLGWRLLMPRRV*HTSSTMLWIWAWMS
Trigger: AGACATCCAGGCCCAGATCCACAGCATTGTGGAGCTTGTGTGCAAAACCCTCCGTGGCATCAACAGCCGCCACCCCAGCCTGACCTTCAG
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000035579.10
ENSMUST00000201611.2
ENSMUST00000202447.4
CDS CAA 90 bp ATAGAGGACTCACCTGCCCTGAAGGTCAGGCTGGGGTGGCGGCTGTaGATGCCACGGAGGGTTTTGCACACAAGCTCCACAATGCTGTGG +
Preference number: 6 (lower is better)
Translates to: IEDSPALKVRLGWRL*MPRRVLHTSSTMLW
Trigger: CCACAGCATTGTGGAGCTTGTGTGCAAAACCCTCCGTGGCATCAACAGCCGCCACCCCAGCCTGACCTTCAGGGCAGGTGAGTCCTCTAT
59% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000035579.10
ENSMUST00000201611.2
ENSMUST00000202447.4
CDS TCA 72 bp CCGGGTACATCGCCAGGTACAGGTCCAAGGAGTCTCTaGGGAGCTGGTAGGACTGGTCAATGCCTTCCCTCT +
Preference number: 6 (lower is better)
Translates to: PGTSPGTGPRSL*GAGRTGQCLPS
Trigger: AGAGGGAAGGCATTGACCAGTCCTACCAGCTCCTCAGAGACTCCTTGGACCTGTACCTGGCGATGTACCCGG
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000035579.10
ENSMUST00000202447.4
CDS CAA 72 bp CTGGTAGGACTGGTCAATGCCTTCCCCTTCTGCACCTaGGCACCACCGCAGCAGGAAGTGGCTTGGGAAGTT +
Preference number: 6 (lower is better)
Translates to: LVGLVNAFPFCT*APPQQEVAWEV
Trigger: AACTTCCCAAGCCACTTCCTGCTGCGGTGGTGCCAAGGTGCAGAAGGGGAAGGCATTGACCAGTCCTACCAG
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000201611.2
CDS TCA 72 bp TCTCCAGCTCTGCATTTGGGATGTAGTGTGTGCCTGTaGACTCCGAGAAGTAGCGCCCCACATCTGGGTGCG +
Preference number: 6 (lower is better)
Translates to: SPALHLGCSVCL*TPRSSAPHLGA
Trigger: CGCACCCAGATGTGGGGCGCTACTTCTCGGAGTTCACAGGCACACACTACATCCCAAATGCAGAGCTGGAGA
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000035579.10
ENSMUST00000201611.2
ENSMUST00000202447.4
CDS GCA 72 bp GTAGATGTAGTCAAAGATGTCCAGGGTTGCCCCTTCTaGACCTTGGCACCACCGCAGCAGGAAGTGGCTTGG +
Preference number: 6 (lower is better)
Translates to: VDVVKDVQGCPF*TLAPPQQEVAW
Trigger: CCAAGCCACTTCCTGCTGCGGTGGTGCCAAGGTGCAGAAGGGGCAACCCTGGACATCTTTGACTACATCTAC
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000035579.10
ENSMUST00000202447.4
CDS GCA 72 bp GGTCAATGCCTTCCCTCTTGCCCAGGCTCAGCAAGTTaGCCACCATCCGCTGTAGCACCTTCTTCACATTCA +
Preference number: 6 (lower is better)
Translates to: GQCLPSCPGSAS*PPSAVAPSSHS
Trigger: TGAATGTGAAGAAGGTGCTACAGCGGATGGTGGGCAACTTGCTGAGCCTGGGCAAGAGGGAAGGCATTGACC
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000035579.10
ENSMUST00000202447.4
CDS CAA 72 bp TGGTCAATGCCTTCCCTCTTGCCCAGGCTCAGCAAGTaGCCCACCATCCGCTGTAGCACCTTCTTCACATTC +
Preference number: 6 (lower is better)
Translates to: WSMPSLLPRLSK*PTIRCSTFFTF
Trigger: GAATGTGAAGAAGGTGCTACAGCGGATGGTGGGCAACTTGCTGAGCCTGGGCAAGAGGGAAGGCATTGACCA
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000035579.10
ENSMUST00000202447.4
CDS CCA 72 bp TTGCACACAAGCTCCACAATGCTGTGGATCTGGGCCTaGATGTCTCTGAAGCTGATGTCGGAGAGTGGGTTG +
Preference number: 6 (lower is better)
Translates to: LHTSSTMLWIWA*MSLKLMSESGL
Trigger: CAACCCACTCTCCGACATCAGCTTCAGAGACATCCAGGCCCAGATCCACAGCATTGTGGAGCTTGTGTGCAA
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000035579.10
ENSMUST00000201611.2
ENSMUST00000202447.4
CDS CCA 72 bp TGTAGCCGTACCTCTTATGCTTCATCACAAGCCCGATaGAGTAGCAGACATCCCTGTGCTTCTCCTCGGAGC +
Preference number: 6 (lower is better)
Translates to: CSRTSYASSQAR*SSRHPCASPRS
Trigger: GCTCCGAGGAGAAGCACAGGGATGTCTGCTACTCCATCGGGCTTGTGATGAAGCATAAGAGGTACGGCTACA
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000035579.10
ENSMUST00000201611.2
ENSMUST00000202447.4
CDS GCA 72 bp CCACGTTGTATTCCAGGTTTTCTTGGGCTGCATATCTaGAGGAGCCATCCTCCACCAGGACGTTGTAGAAGG +
Preference number: 6 (lower is better)
Translates to: PRCIPGFLGLHI*RSHPPPGRCRR
Trigger: CCTTCTACAACGTCCTGGTGGAGGATGGCTCCTGCAGATATGCAGCCCAAGAAAACCTGGAATACAACGTGG
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000035579.10
ENSMUST00000201611.2
ENSMUST00000202447.4
CDS CCA 72 bp AGCCATTACAGGGGACGTGCTCTGAAAAGAACCGCTTaGAGAAGGAAGCTACAATCTTCCGGGCTTCTAACC +
Preference number: 6 (lower is better)
Translates to: SHYRGRALKRTA*RRKLQSSGLLT
Trigger: GGTTAGAAGCCCGGAAGATTGTAGCTTCCTTCTCCAAGCGGTTCTTTTCAGAGCACGTCCCCTGTAATGGCT
51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000035579.10
ENSMUST00000201611.2
ENSMUST00000202447.4
CDS TCA 72 bp CAGCTTTCTGCCGAACTTTATATTCCTCTAACCAATTaGCGTAGTCGGTGGGGCTGTAGTGCTTCATCAGGG +
Preference number: 6 (lower is better)
Translates to: QLSAELYIPLTN*RSRWGCSASSG
Trigger: CCCTGATGAAGCACTACAGCCCCACCGACTACGTCAATTGGTTAGAGGAATATAAAGTTCGGCAGAAAGCTG
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000035579.10
ENSMUST00000201611.2
ENSMUST00000202447.4
CDS CAA 90 bp GAACTTCAGCTGGTCATACAGGACATAGTTGATAGCGTCCAGCACTaGGCTCTGAAGTTCTATCTCCATTATCATAGAGGACTCACCTGC +
Preference number: 6 (lower is better)
Translates to: ELQLVIQDIVDSVQH*ALKFYLHYHRGLTC
Trigger: GCAGGTGAGTCCTCTATGATAATGGAGATAGAACTTCAGAGCCAAGTGCTGGACGCTATCAACTATGTCCTGTATGACCAGCTGAAGTTC
47% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000035579.10
ENSMUST00000201611.2
ENSMUST00000202447.4
CDS GCA 72 bp CAATCAGGTACTCACACTCTTTCACTGTCAGCTGCTTaGCCTTCCCAAAAGCATCTATGTAGATGTAGTCAA +
Preference number: 6 (lower is better)
Translates to: QSGTHTLSLSAA*PSQKHLCRCSQ
Trigger: TTGACTACATCTACATAGATGCTTTTGGGAAGGGCAAGCAGCTGACAGTGAAAGAGTGTGAGTACCTGATTG
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000035579.10
ENSMUST00000202447.4
CDS CAA 72 bp CTGGTCATACAGGACATAGTTGATAGCGTCCAGCACTaGGCTCTGAAGTTCTATCTCCATTATCATAGAGGA +
Preference number: 6 (lower is better)
Translates to: LVIQDIVDSVQH*ALKFYLHYHRG
Trigger: TCCTCTATGATAATGGAGATAGAACTTCAGAGCCAAGTGCTGGACGCTATCAACTATGTCCTGTATGACCAG
44% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000035579.10
ENSMUST00000201611.2
ENSMUST00000202447.4
CDS GCA 72 bp GATTTTCTGCTGCCGCAGGTAGTAGAGAATTTTCTTTaGGTAGTATTTCCAGGTCAAAGCTTTCCTTCCTTC +
Preference number: 6 (lower is better)
Translates to: DFLLPQVVENFL*VVFPGQSFPSF
Trigger: GAAGGAAGGAAAGCTTTGACCTGGAAATACTACGCAAAGAAAATTCTCTACTACCTGCGGCAGCAGAAAATC
43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000035579.10
ENSMUST00000201611.2
ENSMUST00000202447.4
CDS CAA 72 bp GGATTTTCTGCTGCCGCAGGTAGTAGAGAATTTTCTTaGCGTAGTATTTCCAGGTCAAAGCTTTCCTTCCTT +
Preference number: 6 (lower is better)
Translates to: GFSAAAGSREFS*RSISRSKLSFL
Trigger: AAGGAAGGAAAGCTTTGACCTGGAAATACTACGCAAAGAAAATTCTCTACTACCTGCGGCAGCAGAAAATCC
43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000035579.10
ENSMUST00000201611.2
ENSMUST00000202447.4