RADAR | Search for sensor designs | Human genes | Mouse genes | Code

Pregenerated sensors for FBXO16 (Mus musculus)

Ensembl gene IDs: ENSMUSG00000034532

Ensembl transcript IDs: ENSMUST00000169656.3, ENSMUST00000224629.2, ENSMUST00000226005.2

Found 189 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).

Type Sensor Details
3UTR GCA 90 bp TACTTCCCTCCCCACATTCCTCTGCCACCTCCAACACACCATGTCTaGCAGCCTCTCTCTGAAGGCCGCCGCAGAAGCTGGACCCAAGAC +
Preference number: 1 (lower is better)
Translates to: YFPPHIPLPPPTHHV*QPLSEGRRRSWTQD
Trigger: GTCTTGGGTCCAGCTTCTGCGGCGGCCTTCAGAGAGAGGCTGGCAGACATGGTGTGTTGGAGGTGGCAGAGGAATGTGGGGAGGGAAGTA
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000224629.2
ENSMUST00000226005.2
3UTR CCA 90 bp ACACACCATGTCTGCCAGCCTCTCTCTGAAGGCCGCCGCAGAAGCTaGACCCAAGACCTCCACTCTCCCTGCTCCCTTCATCTCTTTGGC +
Preference number: 1 (lower is better)
Translates to: THHVCQPLSEGRRRS*TQDLHSPCSLHLFG
Trigger: GCCAAAGAGATGAAGGGAGCAGGGAGAGTGGAGGTCTTGGGTCCAGCTTCTGCGGCGGCCTTCAGAGAGAGGCTGGCAGACATGGTGTGT
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000224629.2
ENSMUST00000226005.2
3UTR GCA 90 bp AGTGCTTCCGTTGCTGCTTCACGGTCTGAGGGTGCCACTGGCAGATaGAGAGGCCAGGCGAGACGAACTGGAACTTTTGGAGGGGAACTC +
Preference number: 1 (lower is better)
Translates to: SASVAASRSEGATGR*RGQARRTGTFGGEL
Trigger: GAGTTCCCCTCCAAAAGTTCCAGTTCGTCTCGCCTGGCCTCTGCATCTGCCAGTGGCACCCTCAGACCGTGAAGCAGCAACGGAAGCACT
59% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000226005.2
3UTR GCA 90 bp AGAGAAGAAGAGTTGGGTATCACTACTTCCCTCCCCACATTCCTCTaGCACCTCCAACACACCATGTCTGCCAGCCTCTCTCTGAAGGCC +
Preference number: 1 (lower is better)
Translates to: REEELGITTSLPTFL*HLQHTMSASLSLKA
Trigger: GGCCTTCAGAGAGAGGCTGGCAGACATGGTGTGTTGGAGGTGGCAGAGGAATGTGGGGAGGGAAGTAGTGATACCCAACTCTTCTTCTCT
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000224629.2
ENSMUST00000226005.2
3UTR CCA 90 bp TGGGTGACGCCAGGAGTGTGGGAGAGTGTAAGAGAGAAGAAGAGTTaGGTATCACTACTTCCCTCCCCACATTCCTCTGCCACCTCCAAC +
Preference number: 1 (lower is better)
Translates to: WVTPGVWESVREKKS*VSLLPSPHSSATSN
Trigger: GTTGGAGGTGGCAGAGGAATGTGGGGAGGGAAGTAGTGATACCCAACTCTTCTTCTCTCTTACACTCTCCCACACTCCTGGCGTCACCCA
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000224629.2
ENSMUST00000226005.2
3UTR GCA 90 bp TTTTCCATGGTTCTGCCTAGACTTACTGCTCAGCCTTGCCAGTTCTaGTCTCTTGCCTCAGGAGGCTGGCAGCTAAGGACAGAATCACTA +
Preference number: 1 (lower is better)
Translates to: FSMVLPRLTAQPCQF*SLASGGWQLRTESL
Trigger: TAGTGATTCTGTCCTTAGCTGCCAGCCTCCTGAGGCAAGAGAGCAGAACTGGCAAGGCTGAGCAGTAAGTCTAGGCAGAACCATGGAAAA
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000224629.2
ENSMUST00000226005.2
3UTR GCA 90 bp TGCTTACATGCCCATTGTCACTCCTTTAGACATGTGCTCTATTATTaGTGGAGTGGGAAGTTGGTGCATGCGGCGGCCAGAGGTCACCTT +
Preference number: 1 (lower is better)
Translates to: CLHAHCHSFRHVLYY*WSGKLVHAAARGHL
Trigger: AAGGTGACCTCTGGCCGCCGCATGCACCAACTTCCCACTCCAGCAATAATAGAGCACATGTCTAAAGGAGTGACAATGGGCATGTAAGCA
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000224629.2
ENSMUST00000226005.2
3UTR CCA 90 bp CAACATGTAAGAGTCATGGATCATGGCCCAGGAGAGCTGCAGGCCTaGATCCAGGGTGGCCAGGATGGAATACAGGTTTTGGTAAGTAAT +
Preference number: 1 (lower is better)
Translates to: QHVRVMDHGPGELQA*IQGGQDGIQVLVSN
Trigger: ATTACTTACCAAAACCTGTATTCCATCCTGGCCACCCTGGATCCAGGCCTGCAGCTCTCCTGGGCCATGATCCATGACTCTTACATGTTG
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000224629.2
ENSMUST00000226005.2
3UTR GCA 90 bp CCCTGTACTCTTTCCCTCCATGATGCTGGTTATTTTCCATGGTTCTaGCTAGACTTACTGCTCAGCCTTGCCAGTTCTGCTCTCTTGCCT +
Preference number: 1 (lower is better)
Translates to: PCTLSLHDAGYFPWF*LDLLLSLASSALLP
Trigger: AGGCAAGAGAGCAGAACTGGCAAGGCTGAGCAGTAAGTCTAGGCAGAACCATGGAAAATAACCAGCATCATGGAGGGAAAGAGTACAGGG
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000224629.2
ENSMUST00000226005.2
3UTR CCA 90 bp TACCAGCCCTGTACTCTTTCCCTCCATGATGCTGGTTATTTTCCATaGTTCTGCCTAGACTTACTGCTCAGCCTTGCCAGTTCTGCTCTC +
Preference number: 1 (lower is better)
Translates to: YQPCTLSLHDAGYFP*FCLDLLLSLASSAL
Trigger: GAGAGCAGAACTGGCAAGGCTGAGCAGTAAGTCTAGGCAGAACCATGGAAAATAACCAGCATCATGGAGGGAAAGAGTACAGGGCTGGTA
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000224629.2
ENSMUST00000226005.2
3UTR CCA 90 bp TTACATGCCCATTGTCACTCCTTTAGACATGTGCTCTATTATTGCTaGAGTGGGAAGTTGGTGCATGCGGCGGCCAGAGGTCACCTTTCA +
Preference number: 1 (lower is better)
Translates to: LHAHCHSFRHVLYYC*SGKLVHAAARGHLS
Trigger: TGAAAGGTGACCTCTGGCCGCCGCATGCACCAACTTCCCACTCCAGCAATAATAGAGCACATGTCTAAAGGAGTGACAATGGGCATGTAA
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000224629.2
ENSMUST00000226005.2
3UTR CCA 90 bp CCTGCATTTGACTTAGAAGAGGAGACTCATGTAAAGACAGGAAGATaGCCAATGGAGAGAGACCTCGAGACCTTGGTGTCACTTGCTGAC +
Preference number: 1 (lower is better)
Translates to: PAFDLEEETHVKTGR*PMERDLETLVSLAD
Trigger: GTCAGCAAGTGACACCAAGGTCTCGAGGTCTCTCTCCATTGGCCATCTTCCTGTCTTTACATGAGTCTCCTCTTCTAAGTCAAATGCAGG
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000224629.2
ENSMUST00000226005.2
3UTR GCA 90 bp AGGAAGGATTTATTTGGCCACAGAAGAAACCAGAGCTCACTTTGTTaGAAACGGGGTGGAGCGTTAGATAGGAAGGGGCCAAGAATAAGA +
Preference number: 1 (lower is better)
Translates to: RKDLFGHRRNQSSLC*KRGGALDRKGPRIR
Trigger: TCTTATTCTTGGCCCCTTCCTATCTAACGCTCCACCCCGTTTGCAACAAAGTGAGCTCTGGTTTCTTCTGTGGCCAAATAAATCCTTCCT
47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000224629.2
ENSMUST00000226005.2
3UTR CCA 90 bp ACTAGTATCTTTTCTTCTAGTTCCAGATGGGTGACGCCAGGAGTGTaGGAGAGTGTAAGAGAGAAGAAGAGTTGGGTATCACTACTTCCC +
Preference number: 1 (lower is better)
Translates to: TSIFSSSSRWVTPGV*ESVREKKSWVSLLP
Trigger: GGGAAGTAGTGATACCCAACTCTTCTTCTCTCTTACACTCTCCCACACTCCTGGCGTCACCCATCTGGAACTAGAAGAAAAGATACTAGT
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000224629.2
ENSMUST00000226005.2
3UTR GCA 90 bp ACCTCAGACTTCCAGTATTCAGACTGTGAGCTAATGCACTTCTATTaGAGAAACCACTCGATCTGTGCTATAGCTAACGCCCTAAGCATC +
Preference number: 1 (lower is better)
Translates to: TSDFQYSDCELMHFY*RNHSICAIANALSI
Trigger: GATGCTTAGGGCGTTAGCTATAGCACAGATCGAGTGGTTTCTGCAATAGAAGTGCATTAGCTCACAGTCTGAATACTGGAAGTCTGAGGT
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000224629.2
ENSMUST00000226005.2
3UTR GCA 90 bp ATGTCTATTGCCATATTTCCAAGAGTCTGCGTTTGTCACCATTTCTaGTGTTCATTCTCTTTTCCTGAGATACACAAACTCGCAGGACCT +
Preference number: 1 (lower is better)
Translates to: MSIAIFPRVCVCHHF*CSFSFPEIHKLAGP
Trigger: AGGTCCTGCGAGTTTGTGTATCTCAGGAAAAGAGAATGAACAGCAGAAATGGTGACAAACGCAGACTCTTGGAAATATGGCAATAGACAT
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000224629.2
ENSMUST00000226005.2
3UTR TCA 90 bp AAGAGTCTGCGTTTGTCACCATTTCTGCTGTTCATTCTCTTTTCCTaGGATACACAAACTCGCAGGACCTTTCACAGTAAGATACTTAAG +
Preference number: 1 (lower is better)
Translates to: KSLRLSPFLLFILFS*DTQTRRTFHSKILK
Trigger: CTTAAGTATCTTACTGTGAAAGGTCCTGCGAGTTTGTGTATCTCAGGAAAAGAGAATGAACAGCAGAAATGGTGACAAACGCAGACTCTT
41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000224629.2
ENSMUST00000226005.2
3UTR TCA 90 bp CTTTACTTAGGTAACTACATCGCAGAACAGCAGTTTCTGGGGAACTaGGATGGGTATATGGGTAGATGGTTGATTGTAGAAAGAAATGTT +
Preference number: 1 (lower is better)
Translates to: LYLGNYIAEQQFLGN*DGYMGRWLIVERNV
Trigger: AACATTTCTTTCTACAATCAACCATCTACCCATATACCCATCTCAGTTCCCCAGAAACTGCTGTTCTGCGATGTAGTTACCTAAGTAAAG
40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000224629.2
ENSMUST00000226005.2
3UTR GCA 90 bp ATGAACATTCACGTCTGTACTGAGTTGTTGTGGATTTGGTTTTCATaGTTGCATTATGTTATTTGGGTTTCCAGAATCACAGAACCCGCA +
Preference number: 1 (lower is better)
Translates to: MNIHVCTELLWIWFS*LHYVIWVSRITEPA
Trigger: TGCGGGTTCTGTGATTCTGGAAACCCAAATAACATAATGCAAGCATGAAAACCAAATCCACAACAACTCAGTACAGACGTGAATGTTCAT
40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000224629.2
ENSMUST00000226005.2
3UTR GCA 90 bp AGCCTCTCGTGGGTTCCTTCATATTCAGACAATAACAGCAAACACTaGTTTTCCATTATTCTACTTTACTTAGGTAACTACATCGCAGAA +
Preference number: 1 (lower is better)
Translates to: SLSWVPSYSDNNSKH*FSIILLYLGNYIAE
Trigger: TTCTGCGATGTAGTTACCTAAGTAAAGTAGAATAATGGAAAAGCAGTGTTTGCTGTTATTGTCTGAATATGAAGGAACCCACGAGAGGCT
39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000224629.2
ENSMUST00000226005.2
3UTR CCA 90 bp GCCTGTTACATGAACATTCACGTCTGTACTGAGTTGTTGTGGATTTaGTTTTCATGCTTGCATTATGTTATTTGGGTTTCCAGAATCACA +
Preference number: 1 (lower is better)
Translates to: ACYMNIHVCTELLWI*FSCLHYVIWVSRIT
Trigger: TGTGATTCTGGAAACCCAAATAACATAATGCAAGCATGAAAACCAAATCCACAACAACTCAGTACAGACGTGAATGTTCATGTAACAGGC
39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000224629.2
ENSMUST00000226005.2
3UTR-3UTR CCA 90 bp GTTCTGCTCTCTTGCCTCAGGAGGCTGGCAGCTAAGGACAGAATCACTAGTATCGGCCGCCGCAGAAGCTaGACCCAAGACCTCCACTCT +
Preference number: 2 (lower is better)
Translates to: VLLSCLRRLAAKDRITSIGRRRS*TQDLHS
Trigger: AGAGTGGAGGTCTTGGGTCCAGCTTCTGCGGCGGCC...GATACTAGTGATTCTGTCCTTAGCTGCCAGCCTCCTGAGGCAAGAGAGCAGAAC
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000224629.2
ENSMUST00000226005.2
3UTR-3UTR GCA 90 bp ATCAGGAGAATGGGAGGGAAGAGTGTGTTAGCGACATGGAGGACTGATGTGGCCCCAGTTCTGCTCTCTTaGCTCAGGAGGCTGGCAGCT +
Preference number: 2 (lower is better)
Translates to: IRRMGGKSVLATWRTDVAPVLLS*LRRLAA
Trigger: AGCTGCCAGCCTCCTGAGGCAAGAGAGCAGAACTGG...GGCCACATCAGTCCTCCATGTCGCTAACACACTCTTCCCTCCCATTCTCCTGAT
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000224629.2
ENSMUST00000226005.2
3UTR-3UTR GCA 90 bp ATGCTTTCTTTGGCTGAGGCATCTCCCTGGTACCAGCCCTGTACTCTTTCCCTCCCAGTTCTGCTCTCTTaGCTCAGGAGGCTGGCAGCT +
Preference number: 2 (lower is better)
Translates to: MLSLAEASPWYQPCTLSLPVLLS*LRRLAA
Trigger: AGCTGCCAGCCTCCTGAGGCAAGAGAGCAGAACTGG...GAGGGAAAGAGTACAGGGCTGGTACCAGGGAGATGCCTCAGCCAAAGAAAGCAT
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000224629.2
ENSMUST00000226005.2
3UTR-3UTR CCA 90 bp GTGTGGGAGAGTGTAAGAGAGAAGAAGAGTTGGGTATCACTACTTCCCTCCCCAGGCCGCCGCAGAAGCTaGACCCAAGACCTCCACTCT +
Preference number: 2 (lower is better)
Translates to: VWESVREKKSWVSLLPSPGRRRS*TQDLHS
Trigger: AGAGTGGAGGTCTTGGGTCCAGCTTCTGCGGCGGCC...TGGGGAGGGAAGTAGTGATACCCAACTCTTCTTCTCTCTTACACTCTCCCACAC
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000224629.2
ENSMUST00000226005.2
3UTR-3UTR GCA 90 bp AGCATTGGGGTGGGTAGCAAGGAGCATGTGTTCCACCACAGGGGAGATAAGAGTCTCCCCACATTCCTCTaGCACCTCCAACACACCATG +
Preference number: 2 (lower is better)
Translates to: SIGVGSKEHVFHHRGDKSLPTFL*HLQHTM
Trigger: CATGGTGTGTTGGAGGTGGCAGAGGAATGTGGGGAG...ACTCTTATCTCCCCTGTGGTGGAACACATGCTCCTTGCTACCCACCCCAATGCT
54% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 2 transcripts:
ENSMUST00000224629.2
ENSMUST00000226005.2
3UTR-3UTR CCA 90 bp AGCATTGGGGTGGGTAGCAAGGAGCATGTGTTCCACCACAGGGGAGATAAGAGTACTTCTGAAGGAGCCTaGGGGTGTCATTCCCTTCCC +
Preference number: 2 (lower is better)
Translates to: SIGVGSKEHVFHHRGDKSTSEGA*GCHSLP
Trigger: GGGAAGGGAATGACACCCCCAGGCTCCTTCAGAAGT...ACTCTTATCTCCCCTGTGGTGGAACACATGCTCCTTGCTACCCACCCCAATGCT
54% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 2 transcripts:
ENSMUST00000224629.2
ENSMUST00000226005.2
3UTR-3UTR CCA 90 bp GATAGGAAGGGGCCAAGAATAAGACAGACTCTTCAGAGGACGAACTCTGGGACCCCAGTGGCCAATGGTTaGGCAGGGAGACAGAGACAG +
Preference number: 2 (lower is better)
Translates to: DRKGPRIRQTLQRTNSGTPVANG*AGRQRQ
Trigger: CTGTCTCTGTCTCCCTGCCCAACCATTGGCCACTGG...GGTCCCAGAGTTCGTCCTCTGAAGAGTCTGTCTTATTCTTGGCCCCTTCCTATC
54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000224629.2
ENSMUST00000226005.2
3UTR-3UTR CCA 90 bp GATAGGAAGGGGCCAAGAATAAGACAGACTCTTCAGAGGACGAACTCTGGGACCGATGCCAGTGGCCAATaGTTGGGCAGGGAGACAGAG +
Preference number: 2 (lower is better)
Translates to: DRKGPRIRQTLQRTNSGTDASGQ*LGRETE
Trigger: CTCTGTCTCCCTGCCCAACCATTGGCCACTGGCATC...GGTCCCAGAGTTCGTCCTCTGAAGAGTCTGTCTTATTCTTGGCCCCTTCCTATC
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000224629.2
ENSMUST00000226005.2
3UTR CAA 90 bp ATGGGTGACGCCAGGAGTGTGGGAGAGTGTAAGAGAGAAGAAGAGTaGGGTATCACTACTTCCCTCCCCACATTCCTCTGCCACCTCCAA +
Preference number: 2 (lower is better)
Translates to: MGDARSVGECKREEE*GITTSLPTFLCHLQ
Trigger: TTGGAGGTGGCAGAGGAATGTGGGGAGGGAAGTAGTGATACCCAACTCTTCTTCTCTCTTACACTCTCCCACACTCCTGGCGTCACCCAT
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000224629.2
ENSMUST00000226005.2
3UTR-3UTR TCA 90 bp TGGCCAGTGCCTGCACAGGGAACTTGCCATAACCATGCGACCCCAAGTTATGTAGATGCTTTCTTTGGCTaGGGCATCTCCCTGGTACCA +
Preference number: 2 (lower is better)
Translates to: WPVPAQGTCHNHATPSYVDAFFG*GISLVP
Trigger: TGGTACCAGGGAGATGCCTCAGCCAAAGAAAGCATC...TACATAACTTGGGGTCGCATGGTTATGGCAAGTTCCCTGTGCAGGCACTGGCCA
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000224629.2
ENSMUST00000226005.2
3UTR-3UTR GCA 90 bp ATGCTTTCTTTGGCTGAGGCATCTCCCTGGTACCAGCCCTGTACTCTTTCCCTCAAAGTTTCTCACTGCTaGCAGGTCCAGGGGCTTCAG +
Preference number: 2 (lower is better)
Translates to: MLSLAEASPWYQPCTLSLKVSHC*QVQGLQ
Trigger: CTGAAGCCCCTGGACCTGGCAGCAGTGAGAAACTTT...GAGGGAAAGAGTACAGGGCTGGTACCAGGGAGATGCCTCAGCCAAAGAAAGCAT
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000224629.2
ENSMUST00000226005.2
3UTR-3UTR GCA 90 bp GTTCTGCTCTCTTGCCTCAGGAGGCTGGCAGCTAAGGACAGAATCACTAGTATCCTCCCCACATTCCTCTaGCACCTCCAACACACCATG +
Preference number: 2 (lower is better)
Translates to: VLLSCLRRLAAKDRITSILPTFL*HLQHTM
Trigger: CATGGTGTGTTGGAGGTGGCAGAGGAATGTGGGGAG...GATACTAGTGATTCTGTCCTTAGCTGCCAGCCTCCTGAGGCAAGAGAGCAGAAC
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000224629.2
ENSMUST00000226005.2
3UTR-3UTR GCA 90 bp GGGGCCAAGAATAAGACAGACTCTTCAGAGGACGAACTCTGGGACCTACTCCCTCTTACTGCTCAGCCTTaGCAGTTCTGCTCTCTTGCC +
Preference number: 2 (lower is better)
Translates to: GAKNKTDSSEDELWDLLPLTAQP*QFCSLA
Trigger: GGCAAGAGAGCAGAACTGGCAAGGCTGAGCAGTAAG...AGGGAGTAGGTCCCAGAGTTCGTCCTCTGAAGAGTCTGTCTTATTCTTGGCCCC
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000224629.2
ENSMUST00000226005.2
3UTR-3UTR CCA 90 bp ATCAGGAGAATGGGAGGGAAGAGTGTGTTAGCGACATGGAGGACTGATGTGGCCCAGGAAGATGGCCAATaGAGAGAGACCTCGAGACCT +
Preference number: 2 (lower is better)
Translates to: IRRMGGKSVLATWRTDVAQEDGQ*RETSRP
Trigger: AGGTCTCGAGGTCTCTCTCCATTGGCCATCTTCCTG...GGCCACATCAGTCCTCCATGTCGCTAACACACTCTTCCCTCCCATTCTCCTGAT
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000224629.2
ENSMUST00000226005.2
3UTR-3UTR CCA 90 bp AGCATTGGGGTGGGTAGCAAGGAGCATGTGTTCCACCACAGGGGAGATAAGAGTCAGGAAGATGGCCAATaGAGAGAGACCTCGAGACCT +
Preference number: 2 (lower is better)
Translates to: SIGVGSKEHVFHHRGDKSQEDGQ*RETSRP
Trigger: AGGTCTCGAGGTCTCTCTCCATTGGCCATCTTCCTG...ACTCTTATCTCCCCTGTGGTGGAACACATGCTCCTTGCTACCCACCCCAATGCT
53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000224629.2
ENSMUST00000226005.2
3UTR-3UTR CCA 90 bp GATAGGAAGGGGCCAAGAATAAGACAGACTCTTCAGAGGACGAACTCTGGGACCAAGAGTCATGGATCATaGCCCAGGAGAGCTGCAGGC +
Preference number: 2 (lower is better)
Translates to: DRKGPRIRQTLQRTNSGTKSHGS*PRRAAG
Trigger: GCCTGCAGCTCTCCTGGGCCATGATCCATGACTCTT...GGTCCCAGAGTTCGTCCTCTGAAGAGTCTGTCTTATTCTTGGCCCCTTCCTATC
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000224629.2
ENSMUST00000226005.2
3UTR-3UTR CCA 90 bp GGACCCAAGACCTCCACTCTCCCTGCTCCCTTCATCTCTTTGGCACAAAGGATGGTAAAGACAGGAAGATaGCCAATGGAGAGAGACCTC +
Preference number: 2 (lower is better)
Translates to: GPKTSTLPAPFISLAQRMVKTGR*PMERDL
Trigger: GAGGTCTCTCTCCATTGGCCATCTTCCTGTCTTTAC...CATCCTTTGTGCCAAAGAGATGAAGGGAGCAGGGAGAGTGGAGGTCTTGGGTCC
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000224629.2
ENSMUST00000226005.2
3UTR-3UTR CCA 90 bp GATAGGAAGGGGCCAAGAATAAGACAGACTCTTCAGAGGACGAACTCTGGGACCCTTGCCTCAGGAGGCTaGCAGCTAAGGACAGAATCA +
Preference number: 2 (lower is better)
Translates to: DRKGPRIRQTLQRTNSGTLASGG*QLRTES
Trigger: TGATTCTGTCCTTAGCTGCCAGCCTCCTGAGGCAAG...GGTCCCAGAGTTCGTCCTCTGAAGAGTCTGTCTTATTCTTGGCCCCTTCCTATC
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000224629.2
ENSMUST00000226005.2
3UTR-3UTR CCA 90 bp TCTGAGAACGGAACTCATCAGGCCTACACAGGATGCTTTCTTTGGCTGAGGCATGCTGAGGCATCTCCCTaGTACCAGCCCTGTACTCTT +
Preference number: 2 (lower is better)
Translates to: SENGTHQAYTGCFLWLRHAEASP*YQPCTL
Trigger: AAGAGTACAGGGCTGGTACCAGGGAGATGCCTCAGC...ATGCCTCAGCCAAAGAAAGCATCCTGTGTAGGCCTGATGAGTTCCGTTCTCAGA
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000224629.2
ENSMUST00000226005.2
3UTR-3UTR CCA 90 bp GATAGGAAGGGGCCAAGAATAAGACAGACTCTTCAGAGGACGAACTCTGGGACCAGTGTGTTAGCGACATaGAGGACTGATGTGGCCCAG +
Preference number: 2 (lower is better)
Translates to: DRKGPRIRQTLQRTNSGTSVLAT*RTDVAQ
Trigger: CTGGGCCACATCAGTCCTCCATGTCGCTAACACACT...GGTCCCAGAGTTCGTCCTCTGAAGAGTCTGTCTTATTCTTGGCCCCTTCCTATC
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000224629.2
ENSMUST00000226005.2
3UTR-3UTR TCA 90 bp GTTCTGCTCTCTTGCCTCAGGAGGCTGGCAGCTAAGGACAGAATCACTAGTATCTCCAACTCTCAGCTGTaGAGAACACCTTGTCGTTTC +
Preference number: 2 (lower is better)
Translates to: VLLSCLRRLAAKDRITSISNSQL*RTPCRF
Trigger: GAAACGACAAGGTGTTCTTCACAGCTGAGAGTTGGA...GATACTAGTGATTCTGTCCTTAGCTGCCAGCCTCCTGAGGCAAGAGAGCAGAAC
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000224629.2
ENSMUST00000226005.2
3UTR-3UTR TCA 90 bp GTGTGGGAGAGTGTAAGAGAGAAGAAGAGTTGGGTATCACTACTTCCCTCCCCATCCTTTAATCAGCTTTaGCTCTGGAGCCTCGGTGAG +
Preference number: 2 (lower is better)
Translates to: VWESVREKKSWVSLLPSPSFNQL*LWSLGE
Trigger: CTCACCGAGGCTCCAGAGTCAAAGCTGATTAAAGGA...TGGGGAGGGAAGTAGTGATACCCAACTCTTCTTCTCTCTTACACTCTCCCACAC
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000226005.2
3UTR-3UTR CCA 90 bp GGGGCCAAGAATAAGACAGACTCTTCAGAGGACGAACTCTGGGACCTACTCCCTAGAGAGAAGAAGAGTTaGGTATCACTACTTCCCTCC +
Preference number: 2 (lower is better)
Translates to: GAKNKTDSSEDELWDLLPREKKS*VSLLPS
Trigger: GGAGGGAAGTAGTGATACCCAACTCTTCTTCTCTCT...AGGGAGTAGGTCCCAGAGTTCGTCCTCTGAAGAGTCTGTCTTATTCTTGGCCCC
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000224629.2
ENSMUST00000226005.2
3UTR-3UTR CCA 90 bp TCATCCCACAGTGATTGGATTTGTCACCTAGAGACCAAGCTTTCAATGCATCAGGGCCTGGATCCAGGGTaGCCAGGATGGAATACAGGT +
Preference number: 2 (lower is better)
Translates to: SSHSDWICHLETKLSMHQGLDPG*PGWNTG
Trigger: ACCTGTATTCCATCCTGGCCACCCTGGATCCAGGCC...CTGATGCATTGAAAGCTTGGTCTCTAGGTGACAAATCCAATCACTGTGGGATGA
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000224629.2
ENSMUST00000226005.2
3UTR-3UTR CCA 90 bp TCATCCCACAGTGATTGGATTTGTCACCTAGAGACCAAGCTTTCAATGCATCAGGATGCCAGTGGCCAATaGTTGGGCAGGGAGACAGAG +
Preference number: 2 (lower is better)
Translates to: SSHSDWICHLETKLSMHQDASGQ*LGRETE
Trigger: CTCTGTCTCCCTGCCCAACCATTGGCCACTGGCATC...CTGATGCATTGAAAGCTTGGTCTCTAGGTGACAAATCCAATCACTGTGGGATGA
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000224629.2
ENSMUST00000226005.2
3UTR CAA 90 bp CATGTAAAGACAGGAAGATGGCCAATGGAGAGAGACCTCGAGACCTaGGTGTCACTTGCTGACACATCACCTCAGACTTCCAGTATTCAG +
Preference number: 2 (lower is better)
Translates to: HVKTGRWPMERDLET*VSLADTSPQTSSIQ
Trigger: CTGAATACTGGAAGTCTGAGGTGATGTGTCAGCAAGTGACACCAAGGTCTCGAGGTCTCTCTCCATTGGCCATCTTCCTGTCTTTACATG
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000224629.2
ENSMUST00000226005.2
3UTR-3UTR TCA 90 bp ATCCTGCCCCATAGCATGTGTTTCTGGCTGAACCATGTCTCTTGTAAAGCTACATCCTTTACCAACTTCTaGAGGAGCCTGGGGGTGTCA +
Preference number: 2 (lower is better)
Translates to: ILPHSMCFWLNHVSCKATSFTNF*RSLGVS
Trigger: TGACACCCCCAGGCTCCTTCAGAAGTTGGTAAAGGA...TGTAGCTTTACAAGAGACATGGTTCAGCCAGAAACACATGCTATGGGGCAGGAT
49% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000224629.2
ENSMUST00000226005.2
3UTR-3UTR TCA 90 bp CGGCGGCCAGAGGTCACCTTTCAGGAGTTAAGTTCTCTCCTTCCACCATGGTTTTACTCTTTCCCTCCATaGTGCTGGTTATTTTCCATG +
Preference number: 2 (lower is better)
Translates to: RRPEVTFQELSSLLPPWFYSFPP*CWLFSM
Trigger: CATGGAAAATAACCAGCATCATGGAGGGAAAGAGTA...AAACCATGGTGGAAGGAGAGAACTTAACTCCTGAAAGGTGACCTCTGGCCGCCG
49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000224629.2
ENSMUST00000226005.2
3UTR-3UTR TCA 90 bp TGGCCAGTGCCTGCACAGGGAACTTGCCATAACCATGCGACCCCAAGTTATGTATCCCGCTACACTAAGTaGTTTTGTTCTGTTTTCCAG +
Preference number: 2 (lower is better)
Translates to: WPVPAQGTCHNHATPSYVSRYTK*FCSVFQ
Trigger: CTGGAAAACAGAACAAAATCACTTAGTGTAGCGGGA...TACATAACTTGGGGTCGCATGGTTATGGCAAGTTCCCTGTGCAGGCACTGGCCA
49% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 2 transcripts:
ENSMUST00000224629.2
ENSMUST00000226005.2
3UTR-3UTR GCA 90 bp GGACCCAAGACCTCCACTCTCCCTGCTCCCTTCATCTCTTTGGCACAAAGGATGATATTTCCAAGAGTCTaGGTTTGTCACCATTTCTGC +
Preference number: 2 (lower is better)
Translates to: GPKTSTLPAPFISLAQRMIFPRV*VCHHFC
Trigger: GCAGAAATGGTGACAAACGCAGACTCTTGGAAATAT...CATCCTTTGTGCCAAAGAGATGAAGGGAGCAGGGAGAGTGGAGGTCTTGGGTCC
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000224629.2
ENSMUST00000226005.2
3UTR-3UTR GCA 90 bp AGCATTGGGGTGGGTAGCAAGGAGCATGTGTTCCACCACAGGGGAGATAAGAGTTATTTTCCATGGTTCTaGCTAGACTTACTGCTCAGC +
Preference number: 2 (lower is better)
Translates to: SIGVGSKEHVFHHRGDKSYFPWF*LDLLLS
Trigger: GCTGAGCAGTAAGTCTAGGCAGAACCATGGAAAATA...ACTCTTATCTCCCCTGTGGTGGAACACATGCTCCTTGCTACCCACCCCAATGCT
49% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 2 transcripts:
ENSMUST00000224629.2
ENSMUST00000226005.2
3UTR-3UTR GCA 90 bp GATAGGAAGGGGCCAAGAATAAGACAGACTCTTCAGAGGACGAACTCTGGGACCCATGTGCTCTATTATTaGTGGAGTGGGAAGTTGGTG +
Preference number: 2 (lower is better)
Translates to: DRKGPRIRQTLQRTNSGTHVLYY*WSGKLV
Trigger: CACCAACTTCCCACTCCAGCAATAATAGAGCACATG...GGTCCCAGAGTTCGTCCTCTGAAGAGTCTGTCTTATTCTTGGCCCCTTCCTATC
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000224629.2
ENSMUST00000226005.2
3UTR-3UTR GCA 90 bp AAAGCTCTTTTAAATTGCTTACATGCCCATTGTCACTCCTTTAGACATGTGCTCGGTGCCACTGGCAGATaGAGAGGCCAGGCGAGACGA +
Preference number: 2 (lower is better)
Translates to: KALLNCLHAHCHSFRHVLGATGR*RGQARR
Trigger: TCGTCTCGCCTGGCCTCTGCATCTGCCAGTGGCACC...GAGCACATGTCTAAAGGAGTGACAATGGGCATGTAAGCAATTTAAAAGAGCTTT
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000226005.2
3UTR-3UTR CCA 90 bp GATAGGAAGGGGCCAAGAATAAGACAGACTCTTCAGAGGACGAACTCTGGGACCAGAGAGAAGAAGAGTTaGGTATCACTACTTCCCTCC +
Preference number: 2 (lower is better)
Translates to: DRKGPRIRQTLQRTNSGTREKKS*VSLLPS
Trigger: GGAGGGAAGTAGTGATACCCAACTCTTCTTCTCTCT...GGTCCCAGAGTTCGTCCTCTGAAGAGTCTGTCTTATTCTTGGCCCCTTCCTATC
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000224629.2
ENSMUST00000226005.2
3UTR-3UTR CCA 90 bp CCCATTGTCACTCCTTTAGACATGTGCTCTATTATTGCTGGAGTGGGAAGTTGGGTGACGCCAGGAGTGTaGGAGAGTGTAAGAGAGAAG +
Preference number: 2 (lower is better)
Translates to: PIVTPLDMCSIIAGVGSWVTPGV*ESVREK
Trigger: CTTCTCTCTTACACTCTCCCACACTCCTGGCGTCAC...CCAACTTCCCACTCCAGCAATAATAGAGCACATGTCTAAAGGAGTGACAATGGG
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000224629.2
ENSMUST00000226005.2
3UTR-3UTR GCA 90 bp AGCATTGGGGTGGGTAGCAAGGAGCATGTGTTCCACCACAGGGGAGATAAGAGTACCCAAGATGTCTATTaGCATATTTCCAAGAGTCTG +
Preference number: 2 (lower is better)
Translates to: SIGVGSKEHVFHHRGDKSTQDVY*HISKSL
Trigger: CAGACTCTTGGAAATATGGCAATAGACATCTTGGGT...ACTCTTATCTCCCCTGTGGTGGAACACATGCTCCTTGCTACCCACCCCAATGCT
48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000224629.2
ENSMUST00000226005.2
3UTR-3UTR GCA 90 bp CGGCGGCCAGAGGTCACCTTTCAGGAGTTAAGTTCTCTCCTTCCACCATGGTTTACTCCTTTAGACATGTaGTCTATTATTGCTGGAGTG +
Preference number: 2 (lower is better)
Translates to: RRPEVTFQELSSLLPPWFTPLDM*SIIAGV
Trigger: CACTCCAGCAATAATAGAGCACATGTCTAAAGGAGT...AAACCATGGTGGAAGGAGAGAACTTAACTCCTGAAAGGTGACCTCTGGCCGCCG
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000224629.2
ENSMUST00000226005.2
3UTR-3UTR CCA 90 bp CCCATTGTCACTCCTTTAGACATGTGCTCTATTATTGCTGGAGTGGGAAGTTGGGAGACCTCGAGACCTTaGTGTCACTTGCTGACACAT +
Preference number: 2 (lower is better)
Translates to: PIVTPLDMCSIIAGVGSWETSRP*CHLLTH
Trigger: ATGTGTCAGCAAGTGACACCAAGGTCTCGAGGTCTC...CCAACTTCCCACTCCAGCAATAATAGAGCACATGTCTAAAGGAGTGACAATGGG
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000224629.2
ENSMUST00000226005.2
3UTR-3UTR CCA 90 bp CCCATTGTCACTCCTTTAGACATGTGCTCTATTATTGCTGGAGTGGGAAGTTGGCTATTATTGCTGGAGTaGGAAGTTGGTGCATGCGGC +
Preference number: 2 (lower is better)
Translates to: PIVTPLDMCSIIAGVGSWLLLLE*EVGACG
Trigger: GCCGCATGCACCAACTTCCCACTCCAGCAATAATAG...CCAACTTCCCACTCCAGCAATAATAGAGCACATGTCTAAAGGAGTGACAATGGG
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000224629.2
ENSMUST00000226005.2
3UTR-3UTR GCA 90 bp ATCAGGAGAATGGGAGGGAAGAGTGTGTTAGCGACATGGAGGACTGATGTGGCCGTTTGTCACCATTTCTaGTGTTCATTCTCTTTTCCT +
Preference number: 2 (lower is better)
Translates to: IRRMGGKSVLATWRTDVAVCHHF*CSFSFP
Trigger: AGGAAAAGAGAATGAACAGCAGAAATGGTGACAAAC...GGCCACATCAGTCCTCCATGTCGCTAACACACTCTTCCCTCCCATTCTCCTGAT
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000224629.2
ENSMUST00000226005.2
3UTR-3UTR GCA 90 bp ATGCTTTCTTTGGCTGAGGCATCTCCCTGGTACCAGCCCTGTACTCTTTCCCTCGTTTGTCACCATTTCTaGTGTTCATTCTCTTTTCCT +
Preference number: 2 (lower is better)
Translates to: MLSLAEASPWYQPCTLSLVCHHF*CSFSFP
Trigger: AGGAAAAGAGAATGAACAGCAGAAATGGTGACAAAC...GAGGGAAAGAGTACAGGGCTGGTACCAGGGAGATGCCTCAGCCAAAGAAAGCAT
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000224629.2
ENSMUST00000226005.2
3UTR-3UTR CCA 90 bp CCCATTGTCACTCCTTTAGACATGTGCTCTATTATTGCTGGAGTGGGAAGTTGGGTAAAGACAGGAAGATaGCCAATGGAGAGAGACCTC +
Preference number: 2 (lower is better)
Translates to: PIVTPLDMCSIIAGVGSWVKTGR*PMERDL
Trigger: GAGGTCTCTCTCCATTGGCCATCTTCCTGTCTTTAC...CCAACTTCCCACTCCAGCAATAATAGAGCACATGTCTAAAGGAGTGACAATGGG
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000224629.2
ENSMUST00000226005.2
3UTR-3UTR CCA 90 bp TCATCCCACAGTGATTGGATTTGTCACCTAGAGACCAAGCTTTCAATGCATCAGCCAGGGTGGCCAGGATaGAATACAGGTTTTGGTAAG +
Preference number: 2 (lower is better)
Translates to: SSHSDWICHLETKLSMHQPGWPG*NTGFGK
Trigger: CTTACCAAAACCTGTATTCCATCCTGGCCACCCTGG...CTGATGCATTGAAAGCTTGGTCTCTAGGTGACAAATCCAATCACTGTGGGATGA
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000224629.2
ENSMUST00000226005.2
3UTR-3UTR TCA 90 bp CCCATTGTCACTCCTTTAGACATGTGCTCTATTATTGCTGGAGTGGGAAGTTGGGCATGTGTTTCTGGCTaGACCATGTCTCTTGTAAAG +
Preference number: 2 (lower is better)
Translates to: PIVTPLDMCSIIAGVGSWACVSG*TMSLVK
Trigger: CTTTACAAGAGACATGGTTCAGCCAGAAACACATGC...CCAACTTCCCACTCCAGCAATAATAGAGCACATGTCTAAAGGAGTGACAATGGG
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000224629.2
ENSMUST00000226005.2
3UTR-3UTR GCA 90 bp ATCAGGAGAATGGGAGGGAAGAGTGTGTTAGCGACATGGAGGACTGATGTGGCCAAAGCTCTTTTAAATTaGTTACATGCCCATTGTCAC +
Preference number: 2 (lower is better)
Translates to: IRRMGGKSVLATWRTDVAKALLN*LHAHCH
Trigger: GTGACAATGGGCATGTAAGCAATTTAAAAGAGCTTT...GGCCACATCAGTCCTCCATGTCGCTAACACACTCTTCCCTCCCATTCTCCTGAT
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000224629.2
ENSMUST00000226005.2
3UTR-3UTR TCA 90 bp GAGTCTGCGTTTGTCACCATTTCTGCTGTTCATTCTCTTTTCCTGAGATACACATCCAACTCTCAGCTGTaGAGAACACCTTGTCGTTTC +
Preference number: 2 (lower is better)
Translates to: ESAFVTISAVHSLFLRYTSNSQL*RTPCRF
Trigger: GAAACGACAAGGTGTTCTTCACAGCTGAGAGTTGGA...TGTGTATCTCAGGAAAAGAGAATGAACAGCAGAAATGGTGACAAACGCAGACTC
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000224629.2
ENSMUST00000226005.2
3UTR-3UTR TCA 90 bp CCCATTGTCACTCCTTTAGACATGTGCTCTATTATTGCTGGAGTGGGAAGTTGGTACTCTTTCCCTCCATaGTGCTGGTTATTTTCCATG +
Preference number: 2 (lower is better)
Translates to: PIVTPLDMCSIIAGVGSWYSFPP*CWLFSM
Trigger: CATGGAAAATAACCAGCATCATGGAGGGAAAGAGTA...CCAACTTCCCACTCCAGCAATAATAGAGCACATGTCTAAAGGAGTGACAATGGG
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000224629.2
ENSMUST00000226005.2
3UTR-3UTR GCA 90 bp AAAGCTCTTTTAAATTGCTTACATGCCCATTGTCACTCCTTTAGACATGTGCTCCTTACTGCTCAGCCTTaGCAGTTCTGCTCTCTTGCC +
Preference number: 2 (lower is better)
Translates to: KALLNCLHAHCHSFRHVLLTAQP*QFCSLA
Trigger: GGCAAGAGAGCAGAACTGGCAAGGCTGAGCAGTAAG...GAGCACATGTCTAAAGGAGTGACAATGGGCATGTAAGCAATTTAAAAGAGCTTT
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000224629.2
ENSMUST00000226005.2
3UTR-3UTR CCA 90 bp GCTCTTTTAAATTGCTTACATGCCCATTGTCACTCCTTTAGACATGTGCTCTATCTTGCCTCAGGAGGCTaGCAGCTAAGGACAGAATCA +
Preference number: 2 (lower is better)
Translates to: ALLNCLHAHCHSFRHVLYLASGG*QLRTES
Trigger: TGATTCTGTCCTTAGCTGCCAGCCTCCTGAGGCAAG...ATAGAGCACATGTCTAAAGGAGTGACAATGGGCATGTAAGCAATTTAAAAGAGC
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000224629.2
ENSMUST00000226005.2
3UTR-3UTR CCA 90 bp TCATCCCACAGTGATTGGATTTGTCACCTAGAGACCAAGCTTTCAATGCATCAGGTGCTCTATTATTGCTaGAGTGGGAAGTTGGTGCAT +
Preference number: 2 (lower is better)
Translates to: SSHSDWICHLETKLSMHQVLYYC*SGKLVH
Trigger: ATGCACCAACTTCCCACTCCAGCAATAATAGAGCAC...CTGATGCATTGAAAGCTTGGTCTCTAGGTGACAAATCCAATCACTGTGGGATGA
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000224629.2
ENSMUST00000226005.2
3UTR-3UTR TCA 90 bp TCATCCCACAGTGATTGGATTTGTCACCTAGAGACCAAGCTTTCAATGCATCAGCATTCACGTCTGTACTaGGTTGTTGTGGATTTGGTT +
Preference number: 2 (lower is better)
Translates to: SSHSDWICHLETKLSMHQHSRLY*VVVDLV
Trigger: AACCAAATCCACAACAACTCAGTACAGACGTGAATG...CTGATGCATTGAAAGCTTGGTCTCTAGGTGACAAATCCAATCACTGTGGGATGA
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000224629.2
ENSMUST00000226005.2
3UTR-3UTR CCA 90 bp AAAGCTCTTTTAAATTGCTTACATGCCCATTGTCACTCCTTTAGACATGTGCTCGAGACCTCGAGACCTTaGTGTCACTTGCTGACACAT +
Preference number: 2 (lower is better)
Translates to: KALLNCLHAHCHSFRHVLETSRP*CHLLTH
Trigger: ATGTGTCAGCAAGTGACACCAAGGTCTCGAGGTCTC...GAGCACATGTCTAAAGGAGTGACAATGGGCATGTAAGCAATTTAAAAGAGCTTT
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000224629.2
ENSMUST00000226005.2
3UTR-3UTR CCA 90 bp TCATCCCACAGTGATTGGATTTGTCACCTAGAGACCAAGCTTTCAATGCATCAGCATAGCATGTGTTTCTaGCTGAACCATGTCTCTTGT +
Preference number: 2 (lower is better)
Translates to: SSHSDWICHLETKLSMHQHSMCF*LNHVSC
Trigger: ACAAGAGACATGGTTCAGCCAGAAACACATGCTATG...CTGATGCATTGAAAGCTTGGTCTCTAGGTGACAAATCCAATCACTGTGGGATGA
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000224629.2
ENSMUST00000226005.2
3UTR-3UTR TCA 90 bp GTACTGAGTTGTTGTGGATTTGGTTTTCATGCTTGCATTATGTTATTTGGGTTTTCCTTTACCAACTTCTaGAGGAGCCTGGGGGTGTCA +
Preference number: 2 (lower is better)
Translates to: VLSCCGFGFHACIMLFGFSFTNF*RSLGVS
Trigger: TGACACCCCCAGGCTCCTTCAGAAGTTGGTAAAGGA...AAACCCAAATAACATAATGCAAGCATGAAAACCAAATCCACAACAACTCAGTAC
42% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 2 transcripts:
ENSMUST00000224629.2
ENSMUST00000226005.2
3UTR-3UTR GCA 90 bp AGGACTGATGTGGCCCAGCCACTGAGCAGATTAAGGCATATTAAATATAAGGCTATATTTCCAAGAGTCTaGGTTTGTCACCATTTCTGC +
Preference number: 2 (lower is better)
Translates to: RTDVAQPLSRLRHIKYKAIFPRV*VCHHFC
Trigger: GCAGAAATGGTGACAAACGCAGACTCTTGGAAATAT...AGCCTTATATTTAATATGCCTTAATCTGCTCAGTGGCTGGGCCACATCAGTCCT
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000224629.2
ENSMUST00000226005.2
3UTR-3UTR GCA 90 bp AGGACTGATGTGGCCCAGCCACTGAGCAGATTAAGGCATATTAAATATAAGGCTACTCCTTTAGACATGTaGTCTATTATTGCTGGAGTG +
Preference number: 2 (lower is better)
Translates to: RTDVAQPLSRLRHIKYKATPLDM*SIIAGV
Trigger: CACTCCAGCAATAATAGAGCACATGTCTAAAGGAGT...AGCCTTATATTTAATATGCCTTAATCTGCTCAGTGGCTGGGCCACATCAGTCCT
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000224629.2
ENSMUST00000226005.2
3UTR-3UTR CCA 90 bp GTACTGAGTTGTTGTGGATTTGGTTTTCATGCTTGCATTATGTTATTTGGGTTTCATGTTGGCAGGTACTaGGGCCTGTGTGTTGGGTTT +
Preference number: 2 (lower is better)
Translates to: VLSCCGFGFHACIMLFGFHVGRY*GLCVGF
Trigger: AAACCCAACACACAGGCCCCAGTACCTGCCAACATG...AAACCCAAATAACATAATGCAAGCATGAAAACCAAATCCACAACAACTCAGTAC
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000224629.2
ENSMUST00000226005.2
3UTR CAA 90 bp ATGGAGGGACTAGCTAGAATCCAACTCTCAGCTGTGAAGAACACCTaGTCGTTTCTAGAAAAAGTCCTTTTCCAATCCTTTAATCAGCTT +
Preference number: 2 (lower is better)
Translates to: MEGLARIQLSAVKNT*SFLEKVLFQSFNQL
Trigger: AAGCTGATTAAAGGATTGGAAAAGGACTTTTTCTAGAAACGACAAGGTGTTCTTCACAGCTGAGAGTTGGATTCTAGCTAGTCCCTCCAT
41% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000226005.2
3UTR-3UTR CCA 90 bp GCTCTTTTAAATTGCTTACATGCCCATTGTCACTCCTTTAGACATGTGCTCTATCATAGCATGTGTTTCTaGCTGAACCATGTCTCTTGT +
Preference number: 2 (lower is better)
Translates to: ALLNCLHAHCHSFRHVLYHSMCF*LNHVSC
Trigger: ACAAGAGACATGGTTCAGCCAGAAACACATGCTATG...ATAGAGCACATGTCTAAAGGAGTGACAATGGGCATGTAAGCAATTTAAAAGAGC
40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000224629.2
ENSMUST00000226005.2
3UTR-3UTR TCA 90 bp GTACTGAGTTGTTGTGGATTTGGTTTTCATGCTTGCATTATGTTATTTGGGTTTCATTCACGTCTGTACTaGGTTGTTGTGGATTTGGTT +
Preference number: 2 (lower is better)
Translates to: VLSCCGFGFHACIMLFGFHSRLY*VVVDLV
Trigger: AACCAAATCCACAACAACTCAGTACAGACGTGAATG...AAACCCAAATAACATAATGCAAGCATGAAAACCAAATCCACAACAACTCAGTAC
38% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000224629.2
ENSMUST00000226005.2
3UTR-3UTR CCA 90 bp GTACTGAGTTGTTGTGGATTTGGTTTTCATGCTTGCATTATGTTATTTGGGTTTGCTGGTTATTTTCCATaGTTCTGCCTAGACTTACTG +
Preference number: 2 (lower is better)
Translates to: VLSCCGFGFHACIMLFGFAGYFP*FCLDLL
Trigger: CAGTAAGTCTAGGCAGAACCATGGAAAATAACCAGC...AAACCCAAATAACATAATGCAAGCATGAAAACCAAATCCACAACAACTCAGTAC
38% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000224629.2
ENSMUST00000226005.2
3UTR-3UTR CCA 90 bp GTACTGAGTTGTTGTGGATTTGGTTTTCATGCTTGCATTATGTTATTTGGGTTTTGTACTGAGTTGTTGTaGATTTGGTTTTCATGCTTG +
Preference number: 2 (lower is better)
Translates to: VLSCCGFGFHACIMLFGFCTELL*IWFSCL
Trigger: CAAGCATGAAAACCAAATCCACAACAACTCAGTACA...AAACCCAAATAACATAATGCAAGCATGAAAACCAAATCCACAACAACTCAGTAC
36% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 2 transcripts:
ENSMUST00000224629.2
ENSMUST00000226005.2
3UTR TCA 72 bp GCCACCTCCAACACACCATGTCTGCCAGCCTCTCTCTaGAGGCCGCCGCAGAAGCTGGACCCAAGACCTCCA +
Preference number: 3 (lower is better)
Translates to: ATSNTPCLPASL*RPPQKLDPRPP
Trigger: TGGAGGTCTTGGGTCCAGCTTCTGCGGCGGCCTTCAGAGAGAGGCTGGCAGACATGGTGTGTTGGAGGTGGC
62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000224629.2
ENSMUST00000226005.2
3UTR CCA 72 bp GTCTGCCAGCCTCTCTCTGAAGGCCGCCGCAGAAGCTaGACCCAAGACCTCCACTCTCCCTGCTCCCTTCAT +
Preference number: 3 (lower is better)
Translates to: VCQPLSEGRRRS*TQDLHSPCSLH
Trigger: ATGAAGGGAGCAGGGAGAGTGGAGGTCTTGGGTCCAGCTTCTGCGGCGGCCTTCAGAGAGAGGCTGGCAGAC
62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000224629.2
ENSMUST00000226005.2
3UTR GCA 72 bp GTTGCTGCTTCACGGTCTGAGGGTGCCACTGGCAGATaGAGAGGCCAGGCGAGACGAACTGGAACTTTTGGA +
Preference number: 3 (lower is better)
Translates to: VAASRSEGATGR*RGQARRTGTFG
Trigger: TCCAAAAGTTCCAGTTCGTCTCGCCTGGCCTCTGCATCTGCCAGTGGCACCCTCAGACCGTGAAGCAGCAAC
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000226005.2
3UTR-3UTR CAA 90 bp GGGGCCAAGAATAAGACAGACTCTTCAGAGGACGAACTCTGGGACCTACTCCCTGCCAGTGGCCAATGGTaGGGCAGGGAGACAGAGACA +
Preference number: 3 (lower is better)
Translates to: GAKNKTDSSEDELWDLLPASGQW*GRETET
Trigger: TGTCTCTGTCTCCCTGCCCAACCATTGGCCACTGGC...AGGGAGTAGGTCCCAGAGTTCGTCCTCTGAAGAGTCTGTCTTATTCTTGGCCCC
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000224629.2
ENSMUST00000226005.2
3UTR CCA 72 bp AGAGTCATGGATCATGGCCCAGGAGAGCTGCAGGCCTaGATCCAGGGTGGCCAGGATGGAATACAGGTTTTG +
Preference number: 3 (lower is better)
Translates to: RVMDHGPGELQA*IQGGQDGIQVL
Trigger: CAAAACCTGTATTCCATCCTGGCCACCCTGGATCCAGGCCTGCAGCTCTCCTGGGCCATGATCCATGACTCT
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000224629.2
ENSMUST00000226005.2
3UTR CCA 72 bp TGCCACTGGCAGATGCAGAGGCCAGGCGAGACGAACTaGAACTTTTGGAGGGGAACTCAGGGAGATCTCAAC +
Preference number: 3 (lower is better)
Translates to: CHWQMQRPGETN*NFWRGTQGDLN
Trigger: GTTGAGATCTCCCTGAGTTCCCCTCCAAAAGTTCCAGTTCGTCTCGCCTGGCCTCTGCATCTGCCAGTGGCA
57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000226005.2
3UTR-3UTR CAA 90 bp TCTGAGAACGGAACTCATCAGGCCTACACAGGATGCTTTCTTTGGCTGAGGCATTGCTGGAGTGGGAAGTaGGTGCATGCGGCGGCCAGA +
Preference number: 3 (lower is better)
Translates to: SENGTHQAYTGCFLWLRHCWSGK*VHAAAR
Trigger: TCTGGCCGCCGCATGCACCAACTTCCCACTCCAGCA...ATGCCTCAGCCAAAGAAAGCATCCTGTGTAGGCCTGATGAGTTCCGTTCTCAGA
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000224629.2
ENSMUST00000226005.2
3UTR GCA 72 bp GTTCTGCCTAGACTTACTGCTCAGCCTTGCCAGTTCTaGTCTCTTGCCTCAGGAGGCTGGCAGCTAAGGACA +
Preference number: 3 (lower is better)
Translates to: VLPRLTAQPCQF*SLASGGWQLRT
Trigger: TGTCCTTAGCTGCCAGCCTCCTGAGGCAAGAGAGCAGAACTGGCAAGGCTGAGCAGTAAGTCTAGGCAGAAC
56% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000224629.2
ENSMUST00000226005.2
3UTR CCA 72 bp ACAGGTAGACTACCAACATGTAAGAGTCATGGATCATaGCCCAGGAGAGCTGCAGGCCTGGATCCAGGGTGG +
Preference number: 3 (lower is better)
Translates to: TGRLPTCKSHGS*PRRAAGLDPGW
Trigger: CCACCCTGGATCCAGGCCTGCAGCTCTCCTGGGCCATGATCCATGACTCTTACATGTTGGTAGTCTACCTGT
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000224629.2
ENSMUST00000226005.2
3UTR TCA 72 bp ATAGCTAACGCCCTAAGCATCTCCTTTACCAACTTCTaGAGGAGCCTGGGGGTGTCATTCCCTTCCCAGGCC +
Preference number: 3 (lower is better)
Translates to: IANALSISFTNF*RSLGVSFPSQA
Trigger: GGCCTGGGAAGGGAATGACACCCCCAGGCTCCTTCAGAAGTTGGTAAAGGAGATGCTTAGGGCGTTAGCTAT
54% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000224629.2
ENSMUST00000226005.2
3UTR CCA 72 bp AACGGAACTCATCAGGCCTACACAGGATGCTTTCTTTaGCTGAGGCATCTCCCTGGTACCAGCCCTGTACTC +
Preference number: 3 (lower is better)
Translates to: NGTHQAYTGCFL*LRHLPGTSPVL
Trigger: GAGTACAGGGCTGGTACCAGGGAGATGCCTCAGCCAAAGAAAGCATCCTGTGTAGGCCTGATGAGTTCCGTT
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000224629.2
ENSMUST00000226005.2
3UTR-3UTR CAA 90 bp ATCAGGAGAATGGGAGGGAAGAGTGTGTTAGCGACATGGAGGACTGATGTGGCCACTTACTGCTCAGCCTaGCCAGTTCTGCTCTCTTGC +
Preference number: 3 (lower is better)
Translates to: IRRMGGKSVLATWRTDVATYCSA*PVLLSC
Trigger: GCAAGAGAGCAGAACTGGCAAGGCTGAGCAGTAAGT...GGCCACATCAGTCCTCCATGTCGCTAACACACTCTTCCCTCCCATTCTCCTGAT
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000224629.2
ENSMUST00000226005.2
3UTR TCA 72 bp GAACTCATCAGGCCTACACAGGATGCTTTCTTTGGCTaGGGCATCTCCCTGGTACCAGCCCTGTACTCTTTC +
Preference number: 3 (lower is better)
Translates to: ELIRPTQDAFFG*GISLVPALYSF
Trigger: GAAAGAGTACAGGGCTGGTACCAGGGAGATGCCTCAGCCAAAGAAAGCATCCTGTGTAGGCCTGATGAGTTC
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000224629.2
ENSMUST00000226005.2
3UTR TCA 72 bp AGCAAGGAGCAGAAAGACAGAAGCCGAAAAGCAAGGTaGGTACGTGCACGGACTTTCCTGGAACTGCGCCTA +
Preference number: 3 (lower is better)
Translates to: SKEQKDRSRKAR*VRARTFLELRL
Trigger: TAGGCGCAGTTCCAGGAAAGTCCGTGCACGTACTCACCTTGCTTTTCGGCTTCTGTCTTTCTGCTCCTTGCT
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000224629.2
ENSMUST00000226005.2
3UTR GCA 72 bp GCCCATTGTCACTCCTTTAGACATGTGCTCTATTATTaGTGGAGTGGGAAGTTGGTGCATGCGGCGGCCAGA +
Preference number: 3 (lower is better)
Translates to: AHCHSFRHVLYY*WSGKLVHAAAR
Trigger: TCTGGCCGCCGCATGCACCAACTTCCCACTCCAGCAATAATAGAGCACATGTCTAAAGGAGTGACAATGGGC
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000224629.2
ENSMUST00000226005.2
3UTR CCA 72 bp CAGGAAGATGGCCAATGGAGAGAGACCTCGAGACCTTaGTGTCACTTGCTGACACATCACCTCAGACTTCCA +
Preference number: 3 (lower is better)
Translates to: QEDGQWRETSRP*CHLLTHHLRLP
Trigger: TGGAAGTCTGAGGTGATGTGTCAGCAAGTGACACCAAGGTCTCGAGGTCTCTCTCCATTGGCCATCTTCCTG
53% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000224629.2
ENSMUST00000226005.2
3UTR CCA 72 bp CTACACAGGATGCTTTCTTTGGCTGAGGCATCTCCCTaGTACCAGCCCTGTACTCTTTCCCTCCATGATGCT +
Preference number: 3 (lower is better)
Translates to: LHRMLSLAEASP*YQPCTLSLHDA
Trigger: AGCATCATGGAGGGAAAGAGTACAGGGCTGGTACCAGGGAGATGCCTCAGCCAAAGAAAGCATCCTGTGTAG
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000224629.2
ENSMUST00000226005.2
3UTR CCA 72 bp TTAGACATGTGCTCTATTATTGCTGGAGTGGGAAGTTaGTGCATGCGGCGGCCAGAGGTCACCTTTCAGGAG +
Preference number: 3 (lower is better)
Translates to: LDMCSIIAGVGS*CMRRPEVTFQE
Trigger: CTCCTGAAAGGTGACCTCTGGCCGCCGCATGCACCAACTTCCCACTCCAGCAATAATAGAGCACATGTCTAA
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000224629.2
ENSMUST00000226005.2
3UTR CCA 72 bp ATCAGGAGAATGGGAGGGAAGAGTGTGTTAGCGACATaGAGGACTGATGTGGCCCAGCCACTGAGCAGATTA +
Preference number: 3 (lower is better)
Translates to: IRRMGGKSVLAT*RTDVAQPLSRL
Trigger: TAATCTGCTCAGTGGCTGGGCCACATCAGTCCTCCATGTCGCTAACACACTCTTCCCTCCCATTCTCCTGAT
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000224629.2
ENSMUST00000226005.2
3UTR-3UTR CAA 90 bp GTGTGGGAGAGTGTAAGAGAGAAGAAGAGTTGGGTATCACTACTTCCCTCCCCAGACGAACTGGAACTTTaGGAGGGGAACTCAGGGAGA +
Preference number: 3 (lower is better)
Translates to: VWESVREKKSWVSLLPSPDELEL*EGNSGR
Trigger: TCTCCCTGAGTTCCCCTCCAAAAGTTCCAGTTCGTC...TGGGGAGGGAAGTAGTGATACCCAACTCTTCTTCTCTCTTACACTCTCCCACAC
51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000226005.2
3UTR TCA 72 bp AATGGGAGGGAAGAGTGTGTTAGCGACATGGAGGACTaGTGTGGCCCAGCCACTGAGCAGATTAAGGCATAT +
Preference number: 3 (lower is better)
Translates to: NGREECVSDMED*CGPATEQIKAY
Trigger: ATATGCCTTAATCTGCTCAGTGGCTGGGCCACATCAGTCCTCCATGTCGCTAACACACTCTTCCCTCCCATT
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000224629.2
ENSMUST00000226005.2
3UTR GCA 72 bp AGGTATTATGGCTGGCCAGTGCCTGCACAGGGAACTTaGCATAACCATGCGACCCCAAGTTATGTACCAAAA +
Preference number: 3 (lower is better)
Translates to: RYYGWPVPAQGT*HNHATPSYVPK
Trigger: TTTTGGTACATAACTTGGGGTCGCATGGTTATGGCAAGTTCCCTGTGCAGGCACTGGCCAGCCATAATACCT
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000224629.2
ENSMUST00000226005.2
3UTR GCA 72 bp TTATTTGGCCACAGAAGAAACCAGAGCTCACTTTGTTaGAAACGGGGTGGAGCGTTAGATAGGAAGGGGCCA +
Preference number: 3 (lower is better)
Translates to: LFGHRRNQSSLC*KRGGALDRKGP
Trigger: TGGCCCCTTCCTATCTAACGCTCCACCCCGTTTGCAACAAAGTGAGCTCTGGTTTCTTCTGTGGCCAAATAA
50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000224629.2
ENSMUST00000226005.2
3UTR-3UTR CAA 90 bp GCTTGCATTATGTTATTTGGGTTTCCAGAATCACAGAACCCGCATGTCTGCATGCACAGGATGCTTTCTTaGGCTGAGGCATCTCCCTGG +
Preference number: 3 (lower is better)
Translates to: ACIMLFGFPESQNPHVCMHRMLS*AEASPW
Trigger: CCAGGGAGATGCCTCAGCCAAAGAAAGCATCCTGTG...CATGCAGACATGCGGGTTCTGTGATTCTGGAAACCCAAATAACATAATGCAAGC
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000224629.2
ENSMUST00000226005.2
3UTR GCA 72 bp CATCTCTTTGGCACAAAGGATGATAAAGTTTCTCACTaGTGCCAGGTCCAGGGGCTTCAGCATCCTATCTTG +
Preference number: 3 (lower is better)
Translates to: HLFGTKDDKVSH*CQVQGLQHPIL
Trigger: CAAGATAGGATGCTGAAGCCCCTGGACCTGGCAGCAGTGAGAAACTTTATCATCCTTTGTGCCAAAGAGATG
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000224629.2
ENSMUST00000226005.2
3UTR GCA 72 bp CTTTCCCTCCATGATGCTGGTTATTTTCCATGGTTCTaGCTAGACTTACTGCTCAGCCTTGCCAGTTCTGCT +
Preference number: 3 (lower is better)
Translates to: LSLHDAGYFPWF*LDLLLSLASSA
Trigger: AGCAGAACTGGCAAGGCTGAGCAGTAAGTCTAGGCAGAACCATGGAAAATAACCAGCATCATGGAGGGAAAG
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000224629.2
ENSMUST00000226005.2
3UTR CCA 72 bp GTCACCTTTCAGGAGTTAAGTTCTCTCCTTCCACCATaGTTTCTGAGAACGGAACTCATCAGGCCTACACAG +
Preference number: 3 (lower is better)
Translates to: VTFQELSSLLPP*FLRTELIRPTQ
Trigger: CTGTGTAGGCCTGATGAGTTCCGTTCTCAGAAACCATGGTGGAAGGAGAGAACTTAACTCCTGAAAGGTGAC
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000224629.2
ENSMUST00000226005.2
3UTR CCA 72 bp CTAGGTGCTGGATGTGTTAGGTCTTTGTTTCCATGTTaGCAGGTACTGGGGCCTGTGTGTTGGGTTTTAAGA +
Preference number: 3 (lower is better)
Translates to: LGAGCVRSLFPC*QVLGPVCWVLR
Trigger: TCTTAAAACCCAACACACAGGCCCCAGTACCTGCCAACATGGAAACAAAGACCTAACACATCCAGCACCTAG
49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000224629.2
ENSMUST00000226005.2
3UTR-3UTR CAA 90 bp TGGCCAGTGCCTGCACAGGGAACTTGCCATAACCATGCGACCCCAAGTTATGTAAACCCAAGATGTCTATaGCCATATTTCCAAGAGTCT +
Preference number: 3 (lower is better)
Translates to: WPVPAQGTCHNHATPSYVNPRCL*PYFQES
Trigger: AGACTCTTGGAAATATGGCAATAGACATCTTGGGTT...TACATAACTTGGGGTCGCATGGTTATGGCAAGTTCCCTGTGCAGGCACTGGCCA
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000224629.2
ENSMUST00000226005.2
3UTR-3UTR CAA 90 bp GATAGGAAGGGGCCAAGAATAAGACAGACTCTTCAGAGGACGAACTCTGGGACCGTCTGTACTGAGTTGTaGTGGATTTGGTTTTCATGC +
Preference number: 3 (lower is better)
Translates to: DRKGPRIRQTLQRTNSGTVCTEL*WIWFSC
Trigger: GCATGAAAACCAAATCCACAACAACTCAGTACAGAC...GGTCCCAGAGTTCGTCCTCTGAAGAGTCTGTCTTATTCTTGGCCCCTTCCTATC
48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000224629.2
ENSMUST00000226005.2
3UTR CCA 72 bp TTTTCTTCTAGTTCCAGATGGGTGACGCCAGGAGTGTaGGAGAGTGTAAGAGAGAAGAAGAGTTGGGTATCA +
Preference number: 3 (lower is better)
Translates to: FSSSSRWVTPGV*ESVREKKSWVS
Trigger: TGATACCCAACTCTTCTTCTCTCTTACACTCTCCCACACTCCTGGCGTCACCCATCTGGAACTAGAAGAAAA
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000224629.2
ENSMUST00000226005.2
3UTR CCA 72 bp GACAGAATCACTAGTATCTTTTCTTCTAGTTCCAGATaGGTGACGCCAGGAGTGTGGGAGAGTGTAAGAGAG +
Preference number: 3 (lower is better)
Translates to: DRITSIFSSSSR*VTPGVWESVRE
Trigger: CTCTCTTACACTCTCCCACACTCCTGGCGTCACCCATCTGGAACTAGAAGAAAAGATACTAGTGATTCTGTC
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000224629.2
ENSMUST00000226005.2
3UTR-3UTR CAA 90 bp ATCCTGCCCCATAGCATGTGTTTCTGGCTGAACCATGTCTCTTGTAAAGCTACAGCTAATGCACTTCTATaGCAGAAACCACTCGATCTG +
Preference number: 3 (lower is better)
Translates to: ILPHSMCFWLNHVSCKATANALL*QKPLDL
Trigger: CAGATCGAGTGGTTTCTGCAATAGAAGTGCATTAGC...TGTAGCTTTACAAGAGACATGGTTCAGCCAGAAACACATGCTATGGGGCAGGAT
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000224629.2
ENSMUST00000226005.2
3UTR TCA 72 bp GGTAACTACATCGCAGAACAGCAGTTTCTGGGGAACTaGGATGGGTATATGGGTAGATGGTTGATTGTAGAA +
Preference number: 3 (lower is better)
Translates to: GNYIAEQQFLGN*DGYMGRWLIVE
Trigger: TTCTACAATCAACCATCTACCCATATACCCATCTCAGTTCCCCAGAAACTGCTGTTCTGCGATGTAGTTACC
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000224629.2
ENSMUST00000226005.2
3UTR GCA 72 bp TTCCAGTATTCAGACTGTGAGCTAATGCACTTCTATTaGAGAAACCACTCGATCTGTGCTATAGCTAACGCC +
Preference number: 3 (lower is better)
Translates to: FQYSDCELMHFY*RNHSICAIANA
Trigger: GGCGTTAGCTATAGCACAGATCGAGTGGTTTCTGCAATAGAAGTGCATTAGCTCACAGTCTGAATACTGGAA
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000224629.2
ENSMUST00000226005.2
3UTR GCA 72 bp ATTGCTTACATGCCCATTGTCACTCCTTTAGACATGTaGTCTATTATTGCTGGAGTGGGAAGTTGGTGCATG +
Preference number: 3 (lower is better)
Translates to: IAYMPIVTPLDM*SIIAGVGSWCM
Trigger: CATGCACCAACTTCCCACTCCAGCAATAATAGAGCACATGTCTAAAGGAGTGACAATGGGCATGTAAGCAAT
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000224629.2
ENSMUST00000226005.2
3UTR-3UTR CAA 90 bp ATCCTGCCCCATAGCATGTGTTTCTGGCTGAACCATGTCTCTTGTAAAGCTACAAACCCAAGATGTCTATaGCCATATTTCCAAGAGTCT +
Preference number: 3 (lower is better)
Translates to: ILPHSMCFWLNHVSCKATNPRCL*PYFQES
Trigger: AGACTCTTGGAAATATGGCAATAGACATCTTGGGTT...TGTAGCTTTACAAGAGACATGGTTCAGCCAGAAACACATGCTATGGGGCAGGAT
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000224629.2
ENSMUST00000226005.2
3UTR TCA 72 bp TCTGGGAGCCTGTTACATGAACATTCACGTCTGTACTaGGTTGTTGTGGATTTGGTTTTCATGCTTGCATTA +
Preference number: 3 (lower is better)
Translates to: SGSLLHEHSRLY*VVVDLVFMLAL
Trigger: TAATGCAAGCATGAAAACCAAATCCACAACAACTCAGTACAGACGTGAATGTTCATGTAACAGGCTCCCAGA
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000224629.2
ENSMUST00000226005.2
3UTR-3UTR CAA 90 bp GTACTGAGTTGTTGTGGATTTGGTTTTCATGCTTGCATTATGTTATTTGGGTTTGCTAATGCACTTCTATaGCAGAAACCACTCGATCTG +
Preference number: 3 (lower is better)
Translates to: VLSCCGFGFHACIMLFGFANALL*QKPLDL
Trigger: CAGATCGAGTGGTTTCTGCAATAGAAGTGCATTAGC...AAACCCAAATAACATAATGCAAGCATGAAAACCAAATCCACAACAACTCAGTAC
39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000224629.2
ENSMUST00000226005.2
3UTR GCA 72 bp CACGTCTGTACTGAGTTGTTGTGGATTTGGTTTTCATaGTTGCATTATGTTATTTGGGTTTCCAGAATCACA +
Preference number: 3 (lower is better)
Translates to: HVCTELLWIWFS*LHYVIWVSRIT
Trigger: TGTGATTCTGGAAACCCAAATAACATAATGCAAGCATGAAAACCAAATCCACAACAACTCAGTACAGACGTG
39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000224629.2
ENSMUST00000226005.2
3UTR GCA 72 bp TCTGTACTGAGTTGTTGTGGATTTGGTTTTCATGCTTaGATTATGTTATTTGGGTTTCCAGAATCACAGAAC +
Preference number: 3 (lower is better)
Translates to: SVLSCCGFGFHA*IMLFGFPESQN
Trigger: GTTCTGTGATTCTGGAAACCCAAATAACATAATGCAAGCATGAAAACCAAATCCACAACAACTCAGTACAGA
38% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000224629.2
ENSMUST00000226005.2
3UTR-3UTR CAA 90 bp GTACTGAGTTGTTGTGGATTTGGTTTTCATGCTTGCATTATGTTATTTGGGTTTCTTGCATTATGTTATTaGGGTTTCCAGAATCACAGA +
Preference number: 3 (lower is better)
Translates to: VLSCCGFGFHACIMLFGFLALCY*GFQNHR
Trigger: TCTGTGATTCTGGAAACCCAAATAACATAATGCAAG...AAACCCAAATAACATAATGCAAGCATGAAAACCAAATCCACAACAACTCAGTAC
36% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000224629.2
ENSMUST00000226005.2
CDS-3UTR GCA 90 bp CACACCATGTCTGCCAGCCTCTCTCTGAAGGCCGCCGCAGAAGCTGGACCCAAGGGTGCCACTGGCAGATaGAGAGGCCAGGCGAGACGA +
Preference number: 4 (lower is better)
Translates to: HTMSASLSLKAAAEAGPKGATGR*RGQARR
Trigger: TCGTCTCGCCTGGCCTCTGCATCTGCCAGTGGCACC...CTTGGGTCCAGCTTCTGCGGCGGCCTTCAGAGAGAGGCTGGCAGACATGGTGTG
63% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000224629.2
CDS-3UTR CCA 90 bp CACACCATGTCTGCCAGCCTCTCTCTGAAGGCCGCCGCAGAAGCTGGACCCAAGTTGAGCATCCAGAGCTaGTCCAACTCAGCCAAGCTC +
Preference number: 4 (lower is better)
Translates to: HTMSASLSLKAAAEAGPKLSIQS*SNSAKL
Trigger: GAGCTTGGCTGAGTTGGACCAGCTCTGGATGCTCAA...CTTGGGTCCAGCTTCTGCGGCGGCCTTCAGAGAGAGGCTGGCAGACATGGTGTG
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000224629.2
ENSMUST00000226005.2
CDS-3UTR TCA 90 bp GTGTGGGAGAGTGTAAGAGAGAAGAAGAGTTGGGTATCACTACTTCCCTCCCCACTCGCAGCTGGCGCTTaGAGTCTGGGGTCACTTCGC +
Preference number: 4 (lower is better)
Translates to: VWESVREKKSWVSLLPSPLAAGA*SLGSLR
Trigger: GCGAAGTGACCCCAGACTTCAAGCGCCAGCTGCGAG...TGGGGAGGGAAGTAGTGATACCCAACTCTTCTTCTCTCTTACACTCTCCCACAC
56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000224629.2
ENSMUST00000226005.2
CDS-3UTR GCA 90 bp CACACCATGTCTGCCAGCCTCTCTCTGAAGGCCGCCGCAGAAGCTGGACCCAAGGTACTCATCTTTGTCTaGATTTTGGGGCCATCGATG +
Preference number: 4 (lower is better)
Translates to: HTMSASLSLKAAAEAGPKVLIFV*ILGPSM
Trigger: CATCGATGGCCCCAAAATGCAGACAAAGATGAGTAC...CTTGGGTCCAGCTTCTGCGGCGGCCTTCAGAGAGAGGCTGGCAGACATGGTGTG
56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000224629.2
ENSMUST00000226005.2
3UTR CAA 72 bp GAACGGAACTCATCAGGCCTACACAGGATGCTTTCTTaGGCTGAGGCATCTCCCTGGTACCAGCCCTGTACT +
Preference number: 4 (lower is better)
Translates to: ERNSSGLHRMLS*AEASPWYQPCT
Trigger: AGTACAGGGCTGGTACCAGGGAGATGCCTCAGCCAAAGAAAGCATCCTGTGTAGGCCTGATGAGTTCCGTTC
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000224629.2
ENSMUST00000226005.2
CDS-3UTR TCA 90 bp CCCATTGTCACTCCTTTAGACATGTGCTCTATTATTGCTGGAGTGGGAAGTTGGCTCGCAGCTGGCGCTTaGAGTCTGGGGTCACTTCGC +
Preference number: 4 (lower is better)
Translates to: PIVTPLDMCSIIAGVGSWLAAGA*SLGSLR
Trigger: GCGAAGTGACCCCAGACTTCAAGCGCCAGCTGCGAG...CCAACTTCCCACTCCAGCAATAATAGAGCACATGTCTAAAGGAGTGACAATGGG
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000224629.2
ENSMUST00000226005.2
CDS-3UTR TCA 90 bp GGACCCAAGACCTCCACTCTCCCTGCTCCCTTCATCTCTTTGGCACAAAGGATGATGACTGTGCTTTCCTaGGCCTGGCTCTGTCTTGAA +
Preference number: 4 (lower is better)
Translates to: GPKTSTLPAPFISLAQRMMTVLS*AWLCLE
Trigger: TTCAAGACAGAGCCAGGCTCAGGAAAGCACAGTCAT...CATCCTTTGTGCCAAAGAGATGAAGGGAGCAGGGAGAGTGGAGGTCTTGGGTCC
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000224629.2
ENSMUST00000226005.2
CDS-3UTR TCA 90 bp GGACCCAAGACCTCCACTCTCCCTGCTCCCTTCATCTCTTTGGCACAAAGGATGACTCAGGGAGATCAATaGCTGTGCTTTCCTGAGCCT +
Preference number: 4 (lower is better)
Translates to: GPKTSTLPAPFISLAQRMTQGDQ*LCFPEP
Trigger: AGGCTCAGGAAAGCACAGTCATTGATCTCCCTGAGT...CATCCTTTGTGCCAAAGAGATGAAGGGAGCAGGGAGAGTGGAGGTCTTGGGTCC
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000224629.2
3UTR CAA 72 bp ACAGGAAGATGGCCAATGGAGAGAGACCTCGAGACCTaGGTGTCACTTGCTGACACATCACCTCAGACTTCC +
Preference number: 4 (lower is better)
Translates to: TGRWPMERDLET*VSLADTSPQTS
Trigger: GGAAGTCTGAGGTGATGTGTCAGCAAGTGACACCAAGGTCTCGAGGTCTCTCTCCATTGGCCATCTTCCTGT
53% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000224629.2
ENSMUST00000226005.2
CDS-3UTR TCA 90 bp GGACCCAAGACCTCCACTCTCCCTGCTCCCTTCATCTCTTTGGCACAAAGGATGTTGCCAGGAATTGGCTaGACATCGGCAGTTGTGAAT +
Preference number: 4 (lower is better)
Translates to: GPKTSTLPAPFISLAQRMLPGIG*TSAVVN
Trigger: ATTCACAACTGCCGATGTTCAGCCAATTCCTGGCAA...CATCCTTTGTGCCAAAGAGATGAAGGGAGCAGGGAGAGTGGAGGTCTTGGGTCC
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000224629.2
ENSMUST00000226005.2
CDS-3UTR TCA 90 bp AGCATTGGGGTGGGTAGCAAGGAGCATGTGTTCCACCACAGGGGAGATAAGAGTATGACTGTGCTTTCCTaGGCCTGGCTCTGTCTTGAA +
Preference number: 4 (lower is better)
Translates to: SIGVGSKEHVFHHRGDKSMTVLS*AWLCLE
Trigger: TTCAAGACAGAGCCAGGCTCAGGAAAGCACAGTCAT...ACTCTTATCTCCCCTGTGGTGGAACACATGCTCCTTGCTACCCACCCCAATGCT
52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000224629.2
ENSMUST00000226005.2
CDS-3UTR CCA 90 bp TGCTTTCTTTGGCTGAGGCATCTCCCTGGTACCAGCCCTGTACTCTTTCCCTCCGCCATCGATGCTTTTTaGAGGTGCAAAGGCCATCAT +
Preference number: 4 (lower is better)
Translates to: CFLWLRHLPGTSPVLFPSAIDAF*RCKGHH
Trigger: ATGATGGCCTTTGCACCTCCAAAAAGCATCGATGGC...GGAGGGAAAGAGTACAGGGCTGGTACCAGGGAGATGCCTCAGCCAAAGAAAGCA
52% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000224629.2
ENSMUST00000226005.2
CDS-3UTR CCA 90 bp ATGCTTTCTTTGGCTGAGGCATCTCCCTGGTACCAGCCCTGTACTCTTTCCCTCGCCATCGATGCTTTTTaGAGGTGCAAAGGCCATCAT +
Preference number: 4 (lower is better)
Translates to: MLSLAEASPWYQPCTLSLAIDAF*RCKGHH
Trigger: ATGATGGCCTTTGCACCTCCAAAAAGCATCGATGGC...GAGGGAAAGAGTACAGGGCTGGTACCAGGGAGATGCCTCAGCCAAAGAAAGCAT
51% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000224629.2
ENSMUST00000226005.2
CDS-3UTR CCA 90 bp ATCAGGAGAATGGGAGGGAAGAGTGTGTTAGCGACATGGAGGACTGATGTGGCCAGAATTGCCAGGAATTaGCTGAACATCGGCAGTTGT +
Preference number: 4 (lower is better)
Translates to: IRRMGGKSVLATWRTDVARIARN*LNIGSC
Trigger: ACAACTGCCGATGTTCAGCCAATTCCTGGCAATTCT...GGCCACATCAGTCCTCCATGTCGCTAACACACTCTTCCCTCCCATTCTCCTGAT
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000224629.2
ENSMUST00000226005.2
CDS-3UTR TCA 90 bp GTGTGGGAGAGTGTAAGAGAGAAGAAGAGTTGGGTATCACTACTTCCCTCCCCAGAACATCGGCAGTTGTaGATTCATCCTTTGGAGGTG +
Preference number: 4 (lower is better)
Translates to: VWESVREKKSWVSLLPSPEHRQL*IHPLEV
Trigger: CACCTCCAAAGGATGAATTCACAACTGCCGATGTTC...TGGGGAGGGAAGTAGTGATACCCAACTCTTCTTCTCTCTTACACTCTCCCACAC
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000224629.2
ENSMUST00000226005.2
CDS-3UTR GCA 90 bp GTTCTGCTCTCTTGCCTCAGGAGGCTGGCAGCTAAGGACAGAATCACTAGTATCGTACTCATCTTTGTCTaGATTTTGGGGCCATCGATG +
Preference number: 4 (lower is better)
Translates to: VLLSCLRRLAAKDRITSIVLIFV*ILGPSM
Trigger: CATCGATGGCCCCAAAATGCAGACAAAGATGAGTAC...GATACTAGTGATTCTGTCCTTAGCTGCCAGCCTCCTGAGGCAAGAGAGCAGAAC
49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000224629.2
ENSMUST00000226005.2
CDS-3UTR GCA 90 bp GTTCTGCTCTCTTGCCTCAGGAGGCTGGCAGCTAAGGACAGAATCACTAGTATCTCTCATCTGGAGAATTaGCAGGAATTGGCTGAACAT +
Preference number: 4 (lower is better)
Translates to: VLLSCLRRLAAKDRITSISHLEN*QELAEH
Trigger: ATGTTCAGCCAATTCCTGGCAATTCTCCAGATGAGA...GATACTAGTGATTCTGTCCTTAGCTGCCAGCCTCCTGAGGCAAGAGAGCAGAAC
48% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000224629.2
ENSMUST00000226005.2
CDS-3UTR CCA 90 bp GTGTGGGAGAGTGTAAGAGAGAAGAAGAGTTGGGTATCACTACTTCCCTCCCCAAGAATTGCCAGGAATTaGCTGAACATCGGCAGTTGT +
Preference number: 4 (lower is better)
Translates to: VWESVREKKSWVSLLPSPRIARN*LNIGSC
Trigger: ACAACTGCCGATGTTCAGCCAATTCCTGGCAATTCT...TGGGGAGGGAAGTAGTGATACCCAACTCTTCTTCTCTCTTACACTCTCCCACAC
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000224629.2
ENSMUST00000226005.2
CDS-3UTR TCA 90 bp GATAGGAAGGGGCCAAGAATAAGACAGACTCTTCAGAGGACGAACTCTGGGACCAGCCTGGCTCTGTCTTaGAGCTTATTTTTCTTATCT +
Preference number: 4 (lower is better)
Translates to: DRKGPRIRQTLQRTNSGTSLALS*SLFFLS
Trigger: AGATAAGAAAAATAAGCTTCAAGACAGAGCCAGGCT...GGTCCCAGAGTTCGTCCTCTGAAGAGTCTGTCTTATTCTTGGCCCCTTCCTATC
47% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000224629.2
ENSMUST00000226005.2
CDS-3UTR GCA 90 bp GTGTGGGAGAGTGTAAGAGAGAAGAAGAGTTGGGTATCACTACTTCCCTCCCCATCTCATCTGGAGAATTaGCAGGAATTGGCTGAACAT +
Preference number: 4 (lower is better)
Translates to: VWESVREKKSWVSLLPSPSHLEN*QELAEH
Trigger: ATGTTCAGCCAATTCCTGGCAATTCTCCAGATGAGA...TGGGGAGGGAAGTAGTGATACCCAACTCTTCTTCTCTCTTACACTCTCCCACAC
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000224629.2
ENSMUST00000226005.2
CDS-3UTR TCA 90 bp TCGAGACCTTGGTGTCACTTGCTGACACATCACCTCAGACTTCCAGTATTCAGAAGAATTCTTCTCCTTTaGGAGTCTGTCCATTTGTCA +
Preference number: 4 (lower is better)
Translates to: SRPWCHLLTHHLRLPVFRRILLL*ESVHLS
Trigger: TGACAAATGGACAGACTCTCAAAGGAGAAGAATTCT...TCTGAATACTGGAAGTCTGAGGTGATGTGTCAGCAAGTGACACCAAGGTCTCGA
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000224629.2
ENSMUST00000226005.2
CDS-3UTR CCA 90 bp ATCCTGCCCCATAGCATGTGTTTCTGGCTGAACCATGTCTCTTGTAAAGCTACATCTTTGTCTGCATTTTaGGGCCATCGATGCTTTTTG +
Preference number: 4 (lower is better)
Translates to: ILPHSMCFWLNHVSCKATSLSAF*GHRCFL
Trigger: CAAAAAGCATCGATGGCCCCAAAATGCAGACAAAGA...TGTAGCTTTACAAGAGACATGGTTCAGCCAGAAACACATGCTATGGGGCAGGAT
44% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 2 transcripts:
ENSMUST00000224629.2
ENSMUST00000226005.2
CDS-3UTR CCA 90 bp TCATCCCACAGTGATTGGATTTGTCACCTAGAGACCAAGCTTTCAATGCATCAGTGTGAATTCATCCTTTaGAGGTGTCTTGGGCTTGGT +
Preference number: 4 (lower is better)
Translates to: SSHSDWICHLETKLSMHQCEFIL*RCLGLG
Trigger: ACCAAGCCCAAGACACCTCCAAAGGATGAATTCACA...CTGATGCATTGAAAGCTTGGTCTCTAGGTGACAAATCCAATCACTGTGGGATGA
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000224629.2
ENSMUST00000226005.2
CDS-3UTR CCA 90 bp AGGACTGATGTGGCCCAGCCACTGAGCAGATTAAGGCATATTAAATATAAGGCTTGTGAATTCATCCTTTaGAGGTGTCTTGGGCTTGGT +
Preference number: 4 (lower is better)
Translates to: RTDVAQPLSRLRHIKYKACEFIL*RCLGLG
Trigger: ACCAAGCCCAAGACACCTCCAAAGGATGAATTCACA...AGCCTTATATTTAATATGCCTTAATCTGCTCAGTGGCTGGGCCACATCAGTCCT
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000224629.2
ENSMUST00000226005.2
CDS-3UTR CCA 90 bp AGGACTGATGTGGCCCAGCCACTGAGCAGATTAAGGCATATTAAATATAAGGCTTCTTTGTCTGCATTTTaGGGCCATCGATGCTTTTTG +
Preference number: 4 (lower is better)
Translates to: RTDVAQPLSRLRHIKYKASLSAF*GHRCFL
Trigger: CAAAAAGCATCGATGGCCCCAAAATGCAGACAAAGA...AGCCTTATATTTAATATGCCTTAATCTGCTCAGTGGCTGGGCCACATCAGTCCT
43% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000224629.2
ENSMUST00000226005.2
CDS-3UTR TCA 90 bp GCTTGCATTATGTTATTTGGGTTTCCAGAATCACAGAACCCGCATGTCTGCATGAGAATTCTTCTCCTTTaGGAGTCTGTCCATTTGTCA +
Preference number: 4 (lower is better)
Translates to: ACIMLFGFPESQNPHVCMRILLL*ESVHLS
Trigger: TGACAAATGGACAGACTCTCAAAGGAGAAGAATTCT...CATGCAGACATGCGGGTTCTGTGATTCTGGAAACCCAAATAACATAATGCAAGC
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000224629.2
ENSMUST00000226005.2
CDS-3UTR GCA 90 bp GCTCTTTTAAATTGCTTACATGCCCATTGTCACTCCTTTAGACATGTGCTCTATGCTAAGGAAGGGGACTaGTTCTCATCTGGAGAATTG +
Preference number: 4 (lower is better)
Translates to: ALLNCLHAHCHSFRHVLYAKEGD*FSSGEL
Trigger: CAATTCTCCAGATGAGAAGCAGTCCCCTTCCTTAGC...ATAGAGCACATGTCTAAAGGAGTGACAATGGGCATGTAAGCAATTTAAAAGAGC
42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000224629.2
ENSMUST00000226005.2
3UTR CAA 72 bp GTTGTGGATTTGGTTTTCATGCTTGCATTATGTTATTaGGGTTTCCAGAATCACAGAACCCGCATGTCTGCA +
Preference number: 4 (lower is better)
Translates to: VVDLVFMLALCY*GFQNHRTRMSA
Trigger: TGCAGACATGCGGGTTCTGTGATTCTGGAAACCCAAATAACATAATGCAAGCATGAAAACCAAATCCACAAC
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000224629.2
ENSMUST00000226005.2
CDS-3UTR TCA 90 bp CTTTTAAATTGCTTACATGCCCATTGTCACTCCTTTAGACATGTGCTCTATTATGAACATCGGCAGTTGTaGATTCATCCTTTGGAGGTG +
Preference number: 4 (lower is better)
Translates to: LLNCLHAHCHSFRHVLYYEHRQL*IHPLEV
Trigger: CACCTCCAAAGGATGAATTCACAACTGCCGATGTTC...ATAATAGAGCACATGTCTAAAGGAGTGACAATGGGCATGTAAGCAATTTAAAAG
40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000224629.2
ENSMUST00000226005.2
3UTR CAA 72 bp CTAGCTAGAATCCAACTCTCAGCTGTGAAGAACACCTaGTCGTTTCTAGAAAAAGTCCTTTTCCAATCCTTT +
Preference number: 4 (lower is better)
Translates to: LARIQLSAVKNT*SFLEKVLFQSF
Trigger: AAAGGATTGGAAAAGGACTTTTTCTAGAAACGACAAGGTGTTCTTCACAGCTGAGAGTTGGATTCTAGCTAG
40% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000224629.2
ENSMUST00000226005.2
3UTR CAA 72 bp GGAGCCTGTTACATGAACATTCACGTCTGTACTGAGTaGTTGTGGATTTGGTTTTCATGCTTGCATTATGTT +
Preference number: 4 (lower is better)
Translates to: GACYMNIHVCTE*LWIWFSCLHYV
Trigger: AACATAATGCAAGCATGAAAACCAAATCCACAACAACTCAGTACAGACGTGAATGTTCATGTAACAGGCTCC
40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000224629.2
ENSMUST00000226005.2
3UTR CAA 72 bp GTCTGTACTGAGTTGTTGTGGATTTGGTTTTCATGCTaGCATTATGTTATTTGGGTTTCCAGAATCACAGAA +
Preference number: 4 (lower is better)
Translates to: VCTELLWIWFSC*HYVIWVSRITE
Trigger: TTCTGTGATTCTGGAAACCCAAATAACATAATGCAAGCATGAAAACCAAATCCACAACAACTCAGTACAGAC
38% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000224629.2
ENSMUST00000226005.2
3UTR CAA 72 bp GCCTGTTACATGAACATTCACGTCTGTACTGAGTTGTaGTGGATTTGGTTTTCATGCTTGCATTATGTTATT +
Preference number: 4 (lower is better)
Translates to: ACYMNIHVCTEL*WIWFSCLHYVI
Trigger: AATAACATAATGCAAGCATGAAAACCAAATCCACAACAACTCAGTACAGACGTGAATGTTCATGTAACAGGC
38% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000224629.2
ENSMUST00000226005.2
CDS-3UTR TCA 90 bp CTTTTAAATTGCTTACATGCCCATTGTCACTCCTTTAGACATGTGCTCTATTATAGCCTGGCTCTGTCTTaGAGCTTATTTTTCTTATCT +
Preference number: 4 (lower is better)
Translates to: LLNCLHAHCHSFRHVLYYSLALS*SLFFLS
Trigger: AGATAAGAAAAATAAGCTTCAAGACAGAGCCAGGCT...ATAATAGAGCACATGTCTAAAGGAGTGACAATGGGCATGTAAGCAATTTAAAAG
37% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000224629.2
ENSMUST00000226005.2
CDS-3UTR CAA 90 bp ATGCTTTCTTTGGCTGAGGCATCTCCCTGGTACCAGCCCTGTACTCTTTCCCTCGGCCATCGATGCTTTTaGGAGGTGCAAAGGCCATCA +
Preference number: 5 (lower is better)
Translates to: MLSLAEASPWYQPCTLSLGHRCF*EVQRPS
Trigger: TGATGGCCTTTGCACCTCCAAAAAGCATCGATGGCC...GAGGGAAAGAGTACAGGGCTGGTACCAGGGAGATGCCTCAGCCAAAGAAAGCAT
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000224629.2
ENSMUST00000226005.2
CDS-3UTR CAA 90 bp ATGCTTTCTTTGGCTGAGGCATCTCCCTGGTACCAGCCCTGTACTCTTTCCCTCGACGAACTGGAACTTTaGGAGGGGAACTCAGGGAGA +
Preference number: 5 (lower is better)
Translates to: MLSLAEASPWYQPCTLSLDELEL*EGNSGR
Trigger: TCTCCCTGAGTTCCCCTCCAAAAGTTCCAGTTCGTC...GAGGGAAAGAGTACAGGGCTGGTACCAGGGAGATGCCTCAGCCAAAGAAAGCAT
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000224629.2
CDS CCA 90 bp CATCTGGATGTAGTGCTTTTTCCAGACGCCCTGTTCAAAGGGCGTTaGGGAGAAGCTGATGTACCAGTTGAAGCGCAGGCACTTGAGCAT +
Preference number: 5 (lower is better)
Translates to: HLDVVLFPDALFKGR*GEADVPVEAQALEH
Trigger: ATGCTCAAGTGCCTGCGCTTCAACTGGTACATCAGCTTCTCCCCAACGCCCTTTGAACAGGGCGTCTGGAAAAAGCACTACATCCAGATG
52% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000169656.3
ENSMUST00000224629.2
ENSMUST00000226005.2
CDS TCA 90 bp AAGGAAGGGGACTGCTTCTCATCTGGAGAATTGCCAGGAATTGGCTaGACATCGGCAGTTGTGAATTCATCCTTTGGAGGTGTCTTGGGC +
Preference number: 5 (lower is better)
Translates to: KEGDCFSSGELPGIG*TSAVVNSSFGGVLG
Trigger: GCCCAAGACACCTCCAAAGGATGAATTCACAACTGCCGATGTTCAGCCAATTCCTGGCAATTCTCCAGATGAGAAGCAGTCCCCTTCCTT
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000169656.3
ENSMUST00000224629.2
ENSMUST00000226005.2
CDS-3UTR CAA 90 bp TGCCTAGACTTACTGCTCAGCCTTGCCAGTTCTGCTCTCTTGCCTCAGGAGGCTATCTTTGTCTGCATTTaGGGGCCATCGATGCTTTTT +
Preference number: 5 (lower is better)
Translates to: CLDLLLSLASSALLPQEAIFVCI*GPSMLF
Trigger: AAAAAGCATCGATGGCCCCAAAATGCAGACAAAGAT...AGCCTCCTGAGGCAAGAGAGCAGAACTGGCAAGGCTGAGCAGTAAGTCTAGGCA
50% GC, longest homopolymer 5 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000224629.2
ENSMUST00000226005.2
CDS-3UTR CAA 90 bp GTGTGGGAGAGTGTAAGAGAGAAGAAGAGTTGGGTATCACTACTTCCCTCCCCAACCACAGGTCTCTCCTaGATGGCAATGACTGTGCTT +
Preference number: 5 (lower is better)
Translates to: VWESVREKKSWVSLLPSPTTGLS*MAMTVL
Trigger: AAGCACAGTCATTGCCATCAAGGAGAGACCTGTGGT...TGGGGAGGGAAGTAGTGATACCCAACTCTTCTTCTCTCTTACACTCTCCCACAC
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000226005.2
CDS TCA 90 bp GGCGAGACGAACTGGAACTTTTGGAGGGGAACTCAGGGAGATCAATaGCTGTGCTTTCCTGAGCCTGGCTCTGTCTTGAAGCTTATTTTT +
Preference number: 5 (lower is better)
Translates to: GETNWNFWRGTQGDQ*LCFPEPGSVLKLIF
Trigger: AAAAATAAGCTTCAAGACAGAGCCAGGCTCAGGAAAGCACAGTCATTGATCTCCCTGAGTTCCCCTCCAAAAGTTCCAGTTCGTCTCGCC
49% GC, longest homopolymer 5 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000224629.2
CDS-3UTR CAA 90 bp ATGCTTTCTTTGGCTGAGGCATCTCCCTGGTACCAGCCCTGTACTCTTTCCCTCATCTTTGTCTGCATTTaGGGGCCATCGATGCTTTTT +
Preference number: 5 (lower is better)
Translates to: MLSLAEASPWYQPCTLSLIFVCI*GPSMLF
Trigger: AAAAAGCATCGATGGCCCCAAAATGCAGACAAAGAT...GAGGGAAAGAGTACAGGGCTGGTACCAGGGAGATGCCTCAGCCAAAGAAAGCAT
49% GC, longest homopolymer 5 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000224629.2
ENSMUST00000226005.2
CDS-3UTR CAA 90 bp GCTTGCATTATGTTATTTGGGTTTCCAGAATCACAGAACCCGCATGTCTGCATGGGCCATCGATGCTTTTaGGAGGTGCAAAGGCCATCA +
Preference number: 5 (lower is better)
Translates to: ACIMLFGFPESQNPHVCMGHRCF*EVQRPS
Trigger: TGATGGCCTTTGCACCTCCAAAAAGCATCGATGGCC...CATGCAGACATGCGGGTTCTGTGATTCTGGAAACCCAAATAACATAATGCAAGC
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000224629.2
ENSMUST00000226005.2
CDS TCA 90 bp GAGCTCTTCGTTCTTCAAATACCTGGTCATTCAGAAGCTGATGGTTaGGAGGTGTCCAGGTACTCATCTTTGTCTGCATTTTGGGGCCAT +
Preference number: 5 (lower is better)
Translates to: ELFVLQIPGHSEADG*EVSRYSSLSAFWGH
Trigger: ATGGCCCCAAAATGCAGACAAAGATGAGTACCTGGACACCTCTCAACCATCAGCTTCTGAATGACCAGGTATTTGAAGAACGAAGAGCTC
47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000169656.3
ENSMUST00000224629.2
ENSMUST00000226005.2
CDS TCA 90 bp GACAGGGAACAGCGCTCTAGTAGGCCTGTAAGAATTCTTCTCCTTTaGGAGTCTGTCCATTTGTCAAACCATTTTCCCAGCAGAGCTCTT +
Preference number: 5 (lower is better)
Translates to: DREQRSSRPVRILLL*ESVHLSNHFPSRAL
Trigger: AAGAGCTCTGCTGGGAAAATGGTTTGACAAATGGACAGACTCTCAAAGGAGAAGAATTCTTACAGGCCTACTAGAGCGCTGTTCCCTGTC
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000169656.3
ENSMUST00000224629.2
ENSMUST00000226005.2
CDS-3UTR CAA 90 bp GTGTGGGAGAGTGTAAGAGAGAAGAAGAGTTGGGTATCACTACTTCCCTCCCCAGAGCCTGGCTCTGTCTaGAAGCTTATTTTTCTTATC +
Preference number: 5 (lower is better)
Translates to: VWESVREKKSWVSLLPSPEPGSV*KLIFLI
Trigger: GATAAGAAAAATAAGCTTCAAGACAGAGCCAGGCTC...TGGGGAGGGAAGTAGTGATACCCAACTCTTCTTCTCTCTTACACTCTCCCACAC
47% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000224629.2
ENSMUST00000226005.2
CDS TCA 90 bp AATTTCCTGATTGCGGGAGGAGTGTTCTGTAAGCAGACTCACCAATaGCTGTGCTTTCCTGAGCCTGGCTCTGTCTTGAAGCTTATTTTT +
Preference number: 5 (lower is better)
Translates to: NFLIAGGVFCKQTHQ*LCFPEPGSVLKLIF
Trigger: AAAAATAAGCTTCAAGACAGAGCCAGGCTCAGGAAAGCACAGTCATTGGTGAGTCTGCTTACAGAACACTCCTCCCGCAATCAGGAAATT
46% GC, longest homopolymer 5 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000169656.3
CDS TCA 90 bp ACAAATTCAATTTCACAAATAGGATTAAGGATCAGGGTAATTTCCTaGTTGCGGGAGGAGTGTTCTGTAAGCAGACTCACCAATGACTGT +
Preference number: 5 (lower is better)
Translates to: TNSISQIGLRIRVIS*LREECSVSRLTNDC
Trigger: ACAGTCATTGGTGAGTCTGCTTACAGAACACTCCTCCCGCAATCAGGAAATTACCCTGATCCTTAATCCTATTTGTGAAATTGAATTTGT
40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000169656.3
CDS CAA 90 bp CAGACGCCCTGTTCAAAGGGCGTTGGGGAGAAGCTGATGTACCAGTaGAAGCGCAGGCACTTGAGCATCCAGAGCTGGTCCAACTCAGCC +
Preference number: 6 (lower is better)
Translates to: QTPCSKGVGEKLMYQ*KRRHLSIQSWSNSA
Trigger: GGCTGAGTTGGACCAGCTCTGGATGCTCAAGTGCCTGCGCTTCAACTGGTACATCAGCTTCTCCCCAACGCCCTTTGAACAGGGCGTCTG
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000169656.3
ENSMUST00000224629.2
ENSMUST00000226005.2
CDS GCA 72 bp CAACTCAGCCAAGCTCTTCCAGTACCAGCTCACCTGTaGACAACGGCAAAGACTCCGGGGATCCAGGAAGGA +
Preference number: 6 (lower is better)
Translates to: QLSQALPVPAHL*TTAKTPGIQEG
Trigger: TCCTTCCTGGATCCCCGGAGTCTTTGCCGTTGTGCACAGGTGAGCTGGTACTGGAAGAGCTTGGCTGAGTTG
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000169656.3
ENSMUST00000224629.2
ENSMUST00000226005.2
CDS CAA 72 bp GGGGAGAAGCTGATGTACCAGTTGAAGCGCAGGCACTaGAGCATCCAGAGCTGGTCCAACTCAGCCAAGCTC +
Preference number: 6 (lower is better)
Translates to: GEKLMYQLKRRH*SIQSWSNSAKL
Trigger: GAGCTTGGCTGAGTTGGACCAGCTCTGGATGCTCAAGTGCCTGCGCTTCAACTGGTACATCAGCTTCTCCCC
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000169656.3
ENSMUST00000224629.2
ENSMUST00000226005.2
CDS CAA 90 bp AAGGGCGTTGGGGAGAAGCTGATGTACCAGTTGAAGCGCAGGCACTaGAGCATCCAGAGCTGGTCCAACTCAGCCAAGCTCTTCCAGTAC +
Preference number: 6 (lower is better)
Translates to: KGVGEKLMYQLKRRH*SIQSWSNSAKLFQY
Trigger: GTACTGGAAGAGCTTGGCTGAGTTGGACCAGCTCTGGATGCTCAAGTGCCTGCGCTTCAACTGGTACATCAGCTTCTCCCCAACGCCCTT
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000169656.3
ENSMUST00000224629.2
ENSMUST00000226005.2
CDS CAA 72 bp TGTTCAAAGGGCGTTGGGGAGAAGCTGATGTACCAGTaGAAGCGCAGGCACTTGAGCATCCAGAGCTGGTCC +
Preference number: 6 (lower is better)
Translates to: CSKGVGEKLMYQ*KRRHLSIQSWS
Trigger: GGACCAGCTCTGGATGCTCAAGTGCCTGCGCTTCAACTGGTACATCAGCTTCTCCCCAACGCCCTTTGAACA
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000169656.3
ENSMUST00000224629.2
ENSMUST00000226005.2
CDS CCA 72 bp GTAGTGCTTTTTCCAGACGCCCTGTTCAAAGGGCGTTaGGGAGAAGCTGATGTACCAGTTGAAGCGCAGGCA +
Preference number: 6 (lower is better)
Translates to: VVLFPDALFKGR*GEADVPVEAQA
Trigger: TGCCTGCGCTTCAACTGGTACATCAGCTTCTCCCCAACGCCCTTTGAACAGGGCGTCTGGAAAAAGCACTAC
54% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000169656.3
ENSMUST00000224629.2
ENSMUST00000226005.2
CDS CAA 72 bp GCAGATGCAGAGGCCAGGCGAGACGAACTGGAACTTTaGGAGGGGAACTCAGGGAGATCAATGACTGTGCTT +
Preference number: 6 (lower is better)
Translates to: ADAEARRDELEL*EGNSGRSMTVL
Trigger: AAGCACAGTCATTGATCTCCCTGAGTTCCCCTCCAAAAGTTCCAGTTCGTCTCGCCTGGCCTCTGCATCTGC
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000224629.2
CDS TCA 72 bp ATTGCGGGAGGAGTGTTCTGTAAGCAGACTCACCAATaGCTGTGCTTTCCTGAGCCTGGCTCTGTCTTGAAG +
Preference number: 6 (lower is better)
Translates to: IAGGVFCKQTHQ*LCFPEPGSVLK
Trigger: CTTCAAGACAGAGCCAGGCTCAGGAAAGCACAGTCATTGGTGAGTCTGCTTACAGAACACTCCTCCCGCAAT
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000169656.3
CDS TCA 72 bp ATAATTAAAGCGGATGATGTCAGTGGGATGCTTATCTaGCGATCGCCAAGGTGGAAGCTCTTTCTCCCCGGG +
Preference number: 6 (lower is better)
Translates to: IIKADDVSGMLI*RSPRWKLFLPG
Trigger: CCCGGGGAGAAAGAGCTTCCACCTTGGCGATCGTCAGATAAGCATCCCACTGACATCATCCGCTTTAATTAT
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000169656.3
ENSMUST00000224629.2
ENSMUST00000226005.2
CDS TCA 72 bp AACTGGAACTTTTGGAGGGGAACTCAGGGAGATCAATaGCTGTGCTTTCCTGAGCCTGGCTCTGTCTTGAAG +
Preference number: 6 (lower is better)
Translates to: NWNFWRGTQGDQ*LCFPEPGSVLK
Trigger: CTTCAAGACAGAGCCAGGCTCAGGAAAGCACAGTCATTGATCTCCCTGAGTTCCCCTCCAAAAGTTCCAGTT
50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000224629.2
CDS CAA 72 bp TTGAGAGGTGTCCAGGTACTCATCTTTGTCTGCATTTaGGGGCCATCGATGCTTTTTGGAGGTGCAAAGGCC +
Preference number: 6 (lower is better)
Translates to: LRGVQVLIFVCI*GPSMLFGGAKA
Trigger: GGCCTTTGCACCTCCAAAAAGCATCGATGGCCCCAAAATGCAGACAAAGATGAGTACCTGGACACCTCTCAA
50% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000169656.3
ENSMUST00000224629.2
ENSMUST00000226005.2
CDS CCA 72 bp AGGGGACTGCTTCTCATCTGGAGAATTGCCAGGAATTaGCTGAACATCGGCAGTTGTGAATTCATCCTTTGG +
Preference number: 6 (lower is better)
Translates to: RGLLLIWRIARN*LNIGSCEFILW
Trigger: CCAAAGGATGAATTCACAACTGCCGATGTTCAGCCAATTCCTGGCAATTCTCCAGATGAGAAGCAGTCCCCT
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000169656.3
ENSMUST00000224629.2
ENSMUST00000226005.2
CDS TCA 72 bp GACTGCTTCTCATCTGGAGAATTGCCAGGAATTGGCTaGACATCGGCAGTTGTGAATTCATCCTTTGGAGGT +
Preference number: 6 (lower is better)
Translates to: DCFSSGELPGIG*TSAVVNSSFGG
Trigger: ACCTCCAAAGGATGAATTCACAACTGCCGATGTTCAGCCAATTCCTGGCAATTCTCCAGATGAGAAGCAGTC
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000169656.3
ENSMUST00000224629.2
ENSMUST00000226005.2
CDS TCA 72 bp GCTCTTCGTTCTTCAAATACCTGGTCATTCAGAAGCTaGTGGTTGAGAGGTGTCCAGGTACTCATCTTTGTC +
Preference number: 6 (lower is better)
Translates to: ALRSSNTWSFRS*WLRGVQVLIFV
Trigger: GACAAAGATGAGTACCTGGACACCTCTCAACCATCAGCTTCTGAATGACCAGGTATTTGAAGAACGAAGAGC
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000169656.3
ENSMUST00000224629.2
ENSMUST00000226005.2
CDS TCA 72 bp CAGCGCTCTAGTAGGCCTGTAAGAATTCTTCTCCTTTaGGAGTCTGTCCATTTGTCAAACCATTTTCCCAGC +
Preference number: 6 (lower is better)
Translates to: QRSSRPVRILLL*ESVHLSNHFPS
Trigger: GCTGGGAAAATGGTTTGACAAATGGACAGACTCTCAAAGGAGAAGAATTCTTACAGGCCTACTAGAGCGCTG
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000169656.3
ENSMUST00000224629.2
ENSMUST00000226005.2
CDS TCA 72 bp ATTTCACAAATAGGATTAAGGATCAGGGTAATTTCCTaGTTGCGGGAGGAGTGTTCTGTAAGCAGACTCACC +
Preference number: 6 (lower is better)
Translates to: ISQIGLRIRVIS*LREECSVSRLT
Trigger: GGTGAGTCTGCTTACAGAACACTCCTCCCGCAATCAGGAAATTACCCTGATCCTTAATCCTATTTGTGAAAT
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000169656.3