RADAR | Search for sensor designs | Human genes | Mouse genes | Code

Pregenerated sensors for FBXL2 (Mus musculus)

Ensembl gene IDs: ENSMUSG00000032507

Ensembl transcript IDs: ENSMUST00000035090.14, ENSMUST00000117537.8, ENSMUST00000143180.8

Found 222 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).

Type Sensor Details
3UTR GCA 90 bp CCCGAGAGGCACAGAGCCTGTAGCCGGTGGCAGCCCCTGCAGATCTaGACCACGCCATCATCAGTGATGCGTGAGCAGGACTGCAGGTTG +
Preference number: 1 (lower is better)
Translates to: PERHRACSRWQPLQI*TTPSSVMREQDCRL
Trigger: CAACCTGCAGTCCTGCTCACGCATCACTGATGATGGCGTGGTGCAGATCTGCAGGGGCTGCCACCGGCTACAGGCTCTGTGCCTCTCGGG
63% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000143180.8
3UTR GCA 90 bp GTGACAAGAAGGCAGTTGTCCAGCTCCAGCACCCGGAGTCTCTCGTaGCCACAGGTGCTGCTGCTCAGGTGCAGGATCCCCTCATCTGTG +
Preference number: 1 (lower is better)
Translates to: VTRRQLSSSSTRSLS*PQVLLLRCRIPSSV
Trigger: CACAGATGAGGGGATCCTGCACCTGAGCAGCAGCACCTGTGGGCACGAGAGACTCCGGGTGCTGGAGCTGGACAACTGCCTTCTTGTCAC
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000143180.8
3UTR CCA 90 bp TCCGTAAGGTTGCTACAACCCGAGAGGCACAGAGCCTGTAGCCGGTaGCAGCCCCTGCAGATCTGCACCACGCCATCATCAGTGATGCGT +
Preference number: 1 (lower is better)
Translates to: SVRLLQPERHRACSR*QPLQICTTPSSVMR
Trigger: ACGCATCACTGATGATGGCGTGGTGCAGATCTGCAGGGGCTGCCACCGGCTACAGGCTCTGTGCCTCTCGGGTTGTAGCAACCTTACGGA
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000143180.8
3UTR CCA 90 bp GCACAGTCGATGTCCACTTCCTGCCACTGCTGGTGGAGGGGTGACTaGAGCAAAGTAGGCATGGACTTTGACATGAGGAAGCTGAGCCCG +
Preference number: 1 (lower is better)
Translates to: AQSMSTSCHCWWRGD*SKVGMDFDMRKLSP
Trigger: CGGGCTCAGCTTCCTCATGTCAAAGTCCATGCCTACTTTGCTCCAGTCACCCCTCCACCAGCAGTGGCAGGAAGTGGACATCGACTGTGC
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000143180.8
3UTR GCA 90 bp GGAGACTGGTCTAACCTGGAGGATGGGGCCCGTGGCCTAAGCAGCTaGTGTCAGAGTATGACACAGCATCTGCACAGTCGATGTCCACTT +
Preference number: 1 (lower is better)
Translates to: GDWSNLEDGARGLSS*CQSMTQHLHSRCPL
Trigger: AAGTGGACATCGACTGTGCAGATGCTGTGTCATACTCTGACAGCAGCTGCTTAGGCCACGGGCCCCATCCTCCAGGTTAGACCAGTCTCC
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000143180.8
3UTR CCA 90 bp TCATGGCAATTCCGAGCTAGCAGTGTAAAGCCTGCGTCGGTCAGATaGGAGCACCGGGCAGCCTCCAAAACTTGTAGTCTGGGGCAGTTC +
Preference number: 1 (lower is better)
Translates to: SWQFRASSVKPASVR*EHRAASKTCSLGQF
Trigger: GAACTGCCCCAGACTACAAGTTTTGGAGGCTGCCCGGTGCTCCCATCTGACCGACGCAGGCTTTACACTGCTAGCTCGGAATTGCCATGA
57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000143180.8
3UTR CCA 90 bp TGGGACAAGCTCAGGGCTTGCAGCTTGGGACAGTGGATGGAGAGCTaGACGAGGGTGCTGTCGGTAATCAGGACACATTCTTCAAGGTCC +
Preference number: 1 (lower is better)
Translates to: WDKLRACSLGQWMES*TRVLSVIRTHSSRS
Trigger: GGACCTTGAAGAATGTGTCCTGATTACCGACAGCACCCTCGTCCAGCTCTCCATCCACTGTCCCAAGCTGCAAGCCCTGAGCTTGTCCCA
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000143180.8
3UTR CCA 90 bp ATGAGCTCACAGTGGGACAAGCTCAGGGCTTGCAGCTTGGGACAGTaGATGGAGAGCTGGACGAGGGTGCTGTCGGTAATCAGGACACAT +
Preference number: 1 (lower is better)
Translates to: MSSQWDKLRACSLGQ*MESWTRVLSVIRTH
Trigger: ATGTGTCCTGATTACCGACAGCACCCTCGTCCAGCTCTCCATCCACTGTCCCAAGCTGCAAGCCCTGAGCTTGTCCCACTGTGAGCTCAT
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000143180.8
3UTR TCA 90 bp GAGCAGGACTGCAGGTTGAGGCTCACCAGCTCGTGGCAGTGGTTCTaGATGTGTTTCAGAGCTTCGTCCTCTAACTGTGTACAACCCCTC +
Preference number: 1 (lower is better)
Translates to: EQDCRLRLTSSWQWF*MCFRASSSNCVQPL
Trigger: GAGGGGTTGTACACAGTTAGAGGACGAAGCTCTGAAACACATTCAGAACCACTGCCACGAGCTGGTGAGCCTCAACCTGCAGTCCTGCTC
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000143180.8
3UTR GCA 90 bp ACAAGGAGCCGTTCGCCTGATGAGTCTCTGGAATGTGTGTGTATCTaGTTTCCCTCCCAGAGTGCATCGGAGACACTGCATCTATGCAGA +
Preference number: 1 (lower is better)
Translates to: TRSRSPDESLECVCI*FPSQSASETLHLCR
Trigger: TCTGCATAGATGCAGTGTCTCCGATGCACTCTGGGAGGGAAAGCAGATACACACACATTCCAGAGACTCATCAGGCGAACGGCTCCTTGT
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000035090.14
3UTR GCA 90 bp GCAGATGCTTCAGTGCTGTCCACCGAGGCAGAAAAAGCTCTTTCTTaGAGTTGTGGTTGGGGTGGTTGCTGGAAGGTTCAGCTACCATTA +
Preference number: 1 (lower is better)
Translates to: ADASVLSTEAEKALS*SCGWGGCWKVQLPL
Trigger: TAATGGTAGCTGAACCTTCCAGCAACCACCCCAACCACAACTGCAAGAAAGAGCTTTTTCTGCCTCGGTGGACAGCACTGAAGCATCTGC
51% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000035090.14
3UTR GCA 90 bp TGTATCTGCTTTCCCTCCCAGAGTGCATCGGAGACACTGCATCTATaGAGATGCTTCAGTGCTGTCCACCGAGGCAGAAAAAGCTCTTTC +
Preference number: 1 (lower is better)
Translates to: CICFPSQSASETLHL*RCFSAVHRGRKSSF
Trigger: GAAAGAGCTTTTTCTGCCTCGGTGGACAGCACTGAAGCATCTGCATAGATGCAGTGTCTCCGATGCACTCTGGGAGGGAAAGCAGATACA
51% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000035090.14
3UTR CCA 90 bp GTATCACAGTACTCCTTACAAGGAGCCGTTCGCCTGATGAGTCTCTaGAATGTGTGTGTATCTGCTTTCCCTCCCAGAGTGCATCGGAGA +
Preference number: 1 (lower is better)
Translates to: VSQYSLQGAVRLMSL*NVCVSAFPPRVHRR
Trigger: TCTCCGATGCACTCTGGGAGGGAAAGCAGATACACACACATTCCAGAGACTCATCAGGCGAACGGCTCCTTGTAAGGAGTACTGTGATAC
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000035090.14
3UTR TCA 90 bp TTGGTCCCTAGAGTTGGGTATGACGAGTTGACACAAACAGAAAGGTaGAGATCCTGCCCCACCCAGCTTAGAGGCCTTGTTTCTTTGGTG +
Preference number: 1 (lower is better)
Translates to: LVPRVGYDELTQTER*RSCPTQLRGLVSLV
Trigger: CACCAAAGAAACAAGGCCTCTAAGCTGGGTGGGGCAGGATCTTCACCTTTCTGTTTGTGTCAACTCGTCATACCCAACTCTAGGGACCAA
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000035090.14
ENSMUST00000143180.8
3UTR TCA 90 bp CCTTTAGGAGGGAGCGCTCCCATCCGTCCTTCCCTTTGCTTTGTGTaGCCACATGCTTTCTGTACCATTCACTTACTTGGGAAAGAAGTG +
Preference number: 1 (lower is better)
Translates to: PLGGSAPIRPSLCFV*PHAFCTIHLLGKEV
Trigger: CACTTCTTTCCCAAGTAAGTGAATGGTACAGAAAGCATGTGGTCACACAAAGCAAAGGGAAGGACGGATGGGAGCGCTCCCTCCTAAAGG
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000035090.14
3UTR GCA 90 bp AATGTGTGTGTATCTGCTTTCCCTCCCAGAGTGCATCGGAGACACTaGATCTATGCAGATGCTTCAGTGCTGTCCACCGAGGCAGAAAAA +
Preference number: 1 (lower is better)
Translates to: NVCVSAFPPRVHRRH*IYADASVLSTEAEK
Trigger: TTTTTCTGCCTCGGTGGACAGCACTGAAGCATCTGCATAGATGCAGTGTCTCCGATGCACTCTGGGAGGGAAAGCAGATACACACACATT
50% GC, longest homopolymer 5 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000035090.14
3UTR GCA 90 bp GGTTGCACCACACCACTCTTGCTGTGGATGACACAGACCTGGATTTaGTTGCATCCTAGCAGTGTTAAGGTGAATAGCATTACCAGGTAC +
Preference number: 1 (lower is better)
Translates to: GCTTPLLLWMTQTWI*LHPSSVKVNSITRY
Trigger: GTACCTGGTAATGCTATTCACCTTAACACTGCTAGGATGCAAGCAAATCCAGGTCTGTGTCATCCACAGCAAGAGTGGTGTGGTGCAACC
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000035090.14
ENSMUST00000143180.8
3UTR GCA 90 bp AGGGAGCGCTCCCATCCGTCCTTCCCTTTGCTTTGTGTGACCACATaGTTTCTGTACCATTCACTTACTTGGGAAAGAAGTGGACTTATC +
Preference number: 1 (lower is better)
Translates to: RERSHPSFPLLCVTT*FLYHSLTWERSGLI
Trigger: GATAAGTCCACTTCTTTCCCAAGTAAGTGAATGGTACAGAAAGCATGTGGTCACACAAAGCAAAGGGAAGGACGGATGGGAGCGCTCCCT
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000035090.14
3UTR CCA 90 bp GCTCTAGGTTGCACCACACCACTCTTGCTGTGGATGACACAGACCTaGATTTGCTTGCATCCTAGCAGTGTTAAGGTGAATAGCATTACC +
Preference number: 1 (lower is better)
Translates to: ALGCTTPLLLWMTQT*ICLHPSSVKVNSIT
Trigger: GGTAATGCTATTCACCTTAACACTGCTAGGATGCAAGCAAATCCAGGTCTGTGTCATCCACAGCAAGAGTGGTGTGGTGCAACCTAGAGC
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000035090.14
ENSMUST00000143180.8
3UTR GCA 90 bp ACCGAGGCAGAAAAAGCTCTTTCTTGCAGTTGTGGTTGGGGTGGTTaGTGGAAGGTTCAGCTACCATTATTAATATTGAAGGTGGGAGGT +
Preference number: 1 (lower is better)
Translates to: TEAEKALSCSCGWGG*WKVQLPLLILKVGG
Trigger: ACCTCCCACCTTCAATATTAATAATGGTAGCTGAACCTTCCAGCAACCACCCCAACCACAACTGCAAGAAAGAGCTTTTTCTGCCTCGGT
47% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000035090.14
3UTR CCA 90 bp GAGGCAGAAAAAGCTCTTTCTTGCAGTTGTGGTTGGGGTGGTTGCTaGAAGGTTCAGCTACCATTATTAATATTGAAGGTGGGAGGTCTC +
Preference number: 1 (lower is better)
Translates to: EAEKALSCSCGWGGC*KVQLPLLILKVGGL
Trigger: GAGACCTCCCACCTTCAATATTAATAATGGTAGCTGAACCTTCCAGCAACCACCCCAACCACAACTGCAAGAAAGAGCTTTTTCTGCCTC
47% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000035090.14
3UTR TCA 90 bp GTAAACGTGTCACTCATTTCAAATCTAAGCTGCACTGTTGTCATCTaGAGTCACATGGACTCAAGGGTTGGCCTCGATGTGCATGGTGTA +
Preference number: 1 (lower is better)
Translates to: VNVSLISNLSCTVVI*SHMDSRVGLDVHGV
Trigger: TACACCATGCACATCGAGGCCAACCCTTGAGTCCATGTGACTTCAGATGACAACAGTGCAGCTTAGATTTGAAATGAGTGACACGTTTAC
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000035090.14
3UTR TCA 90 bp AGCAGTGTTAAGGTGAATAGCATTACCAGGTACTGTAATCTGTGCTaGAGTCTTTTACCTGTAATGTTTTCACCATGGAGAGTCGAGATA +
Preference number: 1 (lower is better)
Translates to: SSVKVNSITRYCNLC*SLLPVMFSPWRVEI
Trigger: TATCTCGACTCTCCATGGTGAAAACATTACAGGTAAAAGACTTCAGCACAGATTACAGTACCTGGTAATGCTATTCACCTTAACACTGCT
40% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000035090.14
ENSMUST00000143180.8
3UTR GCA 90 bp CTTAGAGGCCTTGTTTCTTTGGTGTCTTATGGAAGTATGTTAACATaGCTTTCACACACACTTCTACATATGAAACTACCAGCCATTCTG +
Preference number: 1 (lower is better)
Translates to: LRGLVSLVSYGSMLT*LSHTLLHMKLPAIL
Trigger: CAGAATGGCTGGTAGTTTCATATGTAGAAGTGTGTGTGAAAGGCATGTTAACATACTTCCATAAGACACCAAAGAAACAAGGCCTCTAAG
40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000035090.14
ENSMUST00000143180.8
3UTR-3UTR CCA 90 bp TCGGCAGTTCTCCAGGTGCTCCAGCGAGGCGTCCGTGACAAGAAGGCAGTTGTCCCTGCGTCGGTCAGATaGGAGCACCGGGCAGCCTCC +
Preference number: 2 (lower is better)
Translates to: SAVLQVLQRGVRDKKAVVPASVR*EHRAAS
Trigger: GGAGGCTGCCCGGTGCTCCCATCTGACCGACGCAGG...GACAACTGCCTTCTTGTCACGGACGCCTCGCTGGAGCACCTGGAGAACTGCCGA
64% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000143180.8
3UTR CAA 90 bp CAGTTCTCCAGGTGCTCCAGCGAGGCGTCCGTGACAAGAAGGCAGTaGTCCAGCTCCAGCACCCGGAGTCTCTCGTGCCCACAGGTGCTG +
Preference number: 2 (lower is better)
Translates to: QFSRCSSEASVTRRQ*SSSSTRSLSCPQVL
Trigger: CAGCACCTGTGGGCACGAGAGACTCCGGGTGCTGGAGCTGGACAACTGCCTTCTTGTCACGGACGCCTCGCTGGAGCACCTGGAGAACTG
63% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000143180.8
3UTR CAA 90 bp CTGGGGCAGTTCAGGCCCAAGGCTGTGAGAGATGCATCCGTAAGGTaGCTACAACCCGAGAGGCACAGAGCCTGTAGCCGGTGGCAGCCC +
Preference number: 2 (lower is better)
Translates to: LGQFRPKAVRDASVR*LQPERHRACSRWQP
Trigger: GGGCTGCCACCGGCTACAGGCTCTGTGCCTCTCGGGTTGTAGCAACCTTACGGATGCATCTCTCACAGCCTTGGGCCTGAACTGCCCCAG
62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000143180.8
3UTR-3UTR GCA 90 bp GGCAGTTGTCCAGCTCCAGCACCCGGAGTCTCTCGTGCCCACAGGTGCTGCTGCCCCGTTGCCAGTTGCTaGCATCCAGGGCTAAGATGT +
Preference number: 2 (lower is better)
Translates to: GSCPAPAPGVSRAHRCCCPVASC*HPGLRC
Trigger: ACATCTTAGCCCTGGATGGCAGCAACTGGCAACGGG...GCAGCAGCACCTGTGGGCACGAGAGACTCCGGGTGCTGGAGCTGGACAACTGCC
62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000143180.8
3UTR-3UTR GCA 90 bp TCAGATGGGAGCACCGGGCAGCCTCCAAAACTTGTAGTCTGGGGCAGTTCAGGCGCCGGTGGCAGCCCCTaGAGATCTGCACCACGCCAT +
Preference number: 2 (lower is better)
Translates to: SDGSTGQPPKLVVWGSSGAGGSP*RSAPRH
Trigger: ATGGCGTGGTGCAGATCTGCAGGGGCTGCCACCGGC...GCCTGAACTGCCCCAGACTACAAGTTTTGGAGGCTGCCCGGTGCTCCCATCTGA
62% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 1 transcripts:
ENSMUST00000143180.8
3UTR-3UTR CCA 90 bp TGCACGGGTGACCTGCTGGCAGTCGTAAAGCTCCAGTCGCTCCAGGCCTCGGCATGCAGCTTGGGACAGTaGATGGAGAGCTGGACGAGG +
Preference number: 2 (lower is better)
Translates to: CTGDLLAVVKLQSLQASACSLGQ*MESWTR
Trigger: CCTCGTCCAGCTCTCCATCCACTGTCCCAAGCTGCA...TGCCGAGGCCTGGAGCGACTGGAGCTTTACGACTGCCAGCAGGTCACCCGTGCA
62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000143180.8
3UTR-3UTR GCA 90 bp TCGGCAGTTCTCCAGGTGCTCCAGCGAGGCGTCCGTGACAAGAAGGCAGTTGTCGTGCTGCTGCTCAGGTaGAGGATCCCCTCATCTGTG +
Preference number: 2 (lower is better)
Translates to: SAVLQVLQRGVRDKKAVVVLLLR*RIPSSV
Trigger: CACAGATGAGGGGATCCTGCACCTGAGCAGCAGCAC...GACAACTGCCTTCTTGTCACGGACGCCTCGCTGGAGCACCTGGAGAACTGCCGA
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000143180.8
3UTR-3UTR GCA 90 bp AACCTGGAGGATGGGGCCCGTGGCCTAAGCAGCTGCTGTCAGAGTATGACACAGCATGCGCTTGATGCCTaGACGGGTGACCTGCTGGCA +
Preference number: 2 (lower is better)
Translates to: NLEDGARGLSSCCQSMTQHALDA*TGDLLA
Trigger: TGCCAGCAGGTCACCCGTGCAGGCATCAAGCGCATG...CTGTGTCATACTCTGACAGCAGCTGCTTAGGCCACGGGCCCCATCCTCCAGGTT
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000143180.8
3UTR-3UTR CCA 90 bp AGGAGCCGTTCGCCTGATGAGTCTCTGGAATGTGTGTGTATCTGCTTTCCCTCCGGTGGGAGGTCTCAGTaGCACAGAGCAGCAGCACCG +
Preference number: 2 (lower is better)
Translates to: RSRSPDESLECVCICFPSGGRSQ*HRAAAP
Trigger: CGGTGCTGCTGCTCTGTGCCACTGAGACCTCCCACC...GGAGGGAAAGCAGATACACACACATTCCAGAGACTCATCAGGCGAACGGCTCCT
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000035090.14
3UTR-3UTR TCA 90 bp TGCACGGGTGACCTGCTGGCAGTCGTAAAGCTCCAGTCGCTCCAGGCCTCGGCAGGACAGAAATTGCTGTaGATTACATTAGGCCACTGG +
Preference number: 2 (lower is better)
Translates to: CTGDLLAVVKLQSLQASAGQKLL*ITLGHW
Trigger: CCAGTGGCCTAATGTAATTCACAGCAATTTCTGTCC...TGCCGAGGCCTGGAGCGACTGGAGCTTTACGACTGCCAGCAGGTCACCCGTGCA
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000143180.8
3UTR-3UTR GCA 90 bp TGCACGGGTGACCTGCTGGCAGTCGTAAAGCTCCAGTCGCTCCAGGCCTCGGCACAGGCTCTTTTACTCTaGTCAGGTTGTGCTAACACT +
Preference number: 2 (lower is better)
Translates to: CTGDLLAVVKLQSLQASAQALLL*SGCANT
Trigger: AGTGTTAGCACAACCTGAGCAGAGTAAAAGAGCCTG...TGCCGAGGCCTGGAGCGACTGGAGCTTTACGACTGCCAGCAGGTCACCCGTGCA
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000143180.8
3UTR-3UTR GCA 90 bp TCAGATGGGAGCACCGGGCAGCCTCCAAAACTTGTAGTCTGGGGCAGTTCAGGCCAGAAATGCACTGTGTaGTGTGGCATCTGGCAGAGC +
Preference number: 2 (lower is better)
Translates to: SDGSTGQPPKLVVWGSSGQKCTV*CGIWQS
Trigger: GCTCTGCCAGATGCCACAGCACACAGTGCATTTCTG...GCCTGAACTGCCCCAGACTACAAGTTTTGGAGGCTGCCCGGTGCTCCCATCTGA
57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000143180.8
3UTR-3UTR CCA 90 bp GGCAGTTGTCCAGCTCCAGCACCCGGAGTCTCTCGTGCCCACAGGTGCTGCTGCGACAAGTCCTGCAGATaGACAGAAATTGCTGTGAAT +
Preference number: 2 (lower is better)
Translates to: GSCPAPAPGVSRAHRCCCDKSCR*TEIAVN
Trigger: ATTCACAGCAATTTCTGTCCATCTGCAGGACTTGTC...GCAGCAGCACCTGTGGGCACGAGAGACTCCGGGTGCTGGAGCTGGACAACTGCC
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000143180.8
3UTR-3UTR CCA 90 bp TCAGATGGGAGCACCGGGCAGCCTCCAAAACTTGTAGTCTGGGGCAGTTCAGGCAGCCACCGCACCTCTTaGAGATGTTTTCCACCACTC +
Preference number: 2 (lower is better)
Translates to: SDGSTGQPPKLVVWGSSGSHRTS*RCFPPL
Trigger: GAGTGGTGGAAAACATCTCCAAGAGGTGCGGTGGCT...GCCTGAACTGCCCCAGACTACAAGTTTTGGAGGCTGCCCGGTGCTCCCATCTGA
57% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 1 transcripts:
ENSMUST00000143180.8
3UTR CAA 90 bp ATGCAGCCACGCAGGCTGAGCTTTCTAAGGAAGCCACCGCACCTCTaGGAGATGTTTTCCACCACTCGGCCCTCTACATCTGTCTGGAAG +
Preference number: 2 (lower is better)
Translates to: MQPRRLSFLRKPPHL*EMFSTTRPSTSVWK
Trigger: CTTCCAGACAGATGTAGAGGGCCGAGTGGTGGAAAACATCTCCAAGAGGTGCGGTGGCTTCCTTAGAAAGCTCAGCCTGCGTGGCTGCAT
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000143180.8
3UTR-3UTR GCA 90 bp AAAGTAGGCATGGACTTTGACATGAGGAAGCTGAGCCCGCATGCGCTTGATGCCCAGCCCCTGCAGATCTaGACCACGCCATCATCAGTG +
Preference number: 2 (lower is better)
Translates to: KVGMDFDMRKLSPHALDAQPLQI*TTPSSV
Trigger: CACTGATGATGGCGTGGTGCAGATCTGCAGGGGCTG...GGCATCAAGCGCATGCGGGCTCAGCTTCCTCATGTCAAAGTCCATGCCTACTTT
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000143180.8
3UTR-3UTR CCA 90 bp CACTGCATCTATGCAGATGCTTCAGTGCTGTCCACCGAGGCAGAAAAAGCTCTTGAGACTGGTCTAACCTaGAGGATGGGGCCCGTGGCC +
Preference number: 2 (lower is better)
Translates to: HCIYADASVLSTEAEKALETGLT*RMGPVA
Trigger: GGCCACGGGCCCCATCCTCCAGGTTAGACCAGTCTC...AAGAGCTTTTTCTGCCTCGGTGGACAGCACTGAAGCATCTGCATAGATGCAGTG
56% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000035090.14
3UTR CAA 90 bp CCTTGCAGGCCCTTTAGGAGGGAGCGCTCCCATCCGTCCTTCCCTTaGCTTTGTGTGACCACATGCTTTCTGTACCATTCACTTACTTGG +
Preference number: 2 (lower is better)
Translates to: PCRPFRRERSHPSFP*LCVTTCFLYHSLTW
Trigger: CCAAGTAAGTGAATGGTACAGAAAGCATGTGGTCACACAAAGCAAAGGGAAGGACGGATGGGAGCGCTCCCTCCTAAAGGGCCTGCAAGG
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000035090.14
3UTR CAA 90 bp TATTCCAGGTTCCGGCAGCCCTCGCTGATGCCCTTTAAAGAGCTGTaGGTAACAGACACGCAGGACGTGAGATCCAGGTGTTTCAGCTTG +
Preference number: 2 (lower is better)
Translates to: YSRFRQPSLMPFKEL*VTDTQDVRSRCFSL
Trigger: CAAGCTGAAACACCTGGATCTCACGTCCTGCGTGTCTGTTACCAACAGCTCTTTAAAGGGCATCAGCGAGGGCTGCCGGAACCTGGAATA
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000143180.8
3UTR-3UTR TCA 90 bp ACAGAGCCTGTAGCCGGTGGCAGCCCCTGCAGATCTGCACCACGCCATCATCAGAAGAAGGAGAATATTTaGGTCCTGGTGACATCTGTA +
Preference number: 2 (lower is better)
Translates to: TEPVAGGSPCRSAPRHHQKKENI*VLVTSV
Trigger: TACAGATGTCACCAGGACTCAAATATTCTCCTTCTT...CTGATGATGGCGTGGTGCAGATCTGCAGGGGCTGCCACCGGCTACAGGCTCTGT
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000143180.8
3UTR-3UTR GCA 90 bp CTCTGGAATGTGTGTGTATCTGCTTTCCCTCCCAGAGTGCATCGGAGACACTGCCAGAAATGCACTGTGTaGTGTGGCATCTGGCAGAGC +
Preference number: 2 (lower is better)
Translates to: LWNVCVSAFPPRVHRRHCQKCTV*CGIWQS
Trigger: GCTCTGCCAGATGCCACAGCACACAGTGCATTTCTG...GCAGTGTCTCCGATGCACTCTGGGAGGGAAAGCAGATACACACACATTCCAGAG
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000035090.14
3UTR CAA 90 bp GGTGGGACTTGTATACATAGGTACCCACCTCTGATGGGCTCTAGGTaGCACCACACCACTCTTGCTGTGGATGACACAGACCTGGATTTG +
Preference number: 2 (lower is better)
Translates to: GGTCIHRYPPLMGSR*HHTTLAVDDTDLDL
Trigger: CAAATCCAGGTCTGTGTCATCCACAGCAAGAGTGGTGTGGTGCAACCTAGAGCCCATCAGAGGTGGGTACCTATGTATACAAGTCCCACC
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000035090.14
ENSMUST00000143180.8
3UTR-3UTR TCA 90 bp AAAGTAGGCATGGACTTTGACATGAGGAAGCTGAGCCCGCATGCGCTTGATGCCCACTCTTGCTGTGGATaGCACAGACCTGGATTTGCT +
Preference number: 2 (lower is better)
Translates to: KVGMDFDMRKLSPHALDAHSCCG*HRPGFA
Trigger: AGCAAATCCAGGTCTGTGTCATCCACAGCAAGAGTG...GGCATCAAGCGCATGCGGGCTCAGCTTCCTCATGTCAAAGTCCATGCCTACTTT
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000143180.8
3UTR-3UTR GCA 90 bp GGTTCTGAATGTGTTTCAGAGCTTCGTCCTCTAACTGTGTACAACCCCTCAGGACCACCCGTTGCCAGTTaGTGCCATCCAGGGCTAAGA +
Preference number: 2 (lower is better)
Translates to: GSECVSELRPLTVYNPSGPPVAS*CHPGLR
Trigger: TCTTAGCCCTGGATGGCAGCAACTGGCAACGGGTGG...TCCTGAGGGGTTGTACACAGTTAGAGGACGAAGCTCTGAAACACATTCAGAACC
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000143180.8
3UTR-3UTR CCA 90 bp AAACAGATAAAACTGGCATTTGCTTGGCAGAGTCTTGAAACCCCAGTGCTAGGTGAGACTGGTCTAACCTaGAGGATGGGGCCCGTGGCC +
Preference number: 2 (lower is better)
Translates to: KQIKLAFAWQSLETPVLGETGLT*RMGPVA
Trigger: GGCCACGGGCCCCATCCTCCAGGTTAGACCAGTCTC...ACCTAGCACTGGGGTTTCAAGACTCTGCCAAGCAAATGCCAGTTTTATCTGTTT
52% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 1 transcripts:
ENSMUST00000117537.8
3UTR-3UTR CCA 90 bp TCTGGAATGTGTGTGTATCTGCTTTCCCTCCCAGAGTGCATCGGAGACACTGCACAGTTGTGGTTGGGGTaGTTGCTGGAAGGTTCAGCT +
Preference number: 2 (lower is better)
Translates to: SGMCVYLLSLPECIGDTAQLWLG*LLEGSA
Trigger: AGCTGAACCTTCCAGCAACCACCCCAACCACAACTG...TGCAGTGTCTCCGATGCACTCTGGGAGGGAAAGCAGATACACACACATTCCAGA
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000035090.14
3UTR-3UTR TCA 90 bp GTTCAGCTACCATTATTAATATTGAAGGTGGGAGGTCTCAGTGGCACAGAGCAGATAGGTACCCACCTCTaGTGGGCTCTAGGTTGCACC +
Preference number: 2 (lower is better)
Translates to: VQLPLLILKVGGLSGTEQIGTHL*WALGCT
Trigger: GGTGCAACCTAGAGCCCATCAGAGGTGGGTACCTAT...CTGCTCTGTGCCACTGAGACCTCCCACCTTCAATATTAATAATGGTAGCTGAAC
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000035090.14
3UTR-3UTR CCA 90 bp CAGACCTGGATTTGCTTGCATCCTAGCAGTGTTAAGGTGAATAGCATTACCAGGGAACAGCCAGGAGACTaGTCTAACCTGGAGGATGGG +
Preference number: 2 (lower is better)
Translates to: QTWICLHPSSVKVNSITREQPGD*SNLEDG
Trigger: CCCATCCTCCAGGTTAGACCAGTCTCCTGGCTGTTC...CCTGGTAATGCTATTCACCTTAACACTGCTAGGATGCAAGCAAATCCAGGTCTG
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000035090.14
ENSMUST00000143180.8
3UTR-3UTR CCA 90 bp TGGCTTTTTCCTTTTAACAGAAATGCACTGTGTGCTGTGGCATCTGGCAGAGCTGAACAGCCAGGAGACTaGTCTAACCTGGAGGATGGG +
Preference number: 2 (lower is better)
Translates to: WLFPFNRNALCAVASGRAEQPGD*SNLEDG
Trigger: CCCATCCTCCAGGTTAGACCAGTCTCCTGGCTGTTC...AGCTCTGCCAGATGCCACAGCACACAGTGCATTTCTGTTAAAAGGAAAAAGCCA
50% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000035090.14
ENSMUST00000143180.8
3UTR-3UTR TCA 90 bp TCTAACCTGGAGGATGGGGCCCGTGGCCTAAGCAGCTGCTGTCAGAGTATGACATTTTCGTGCAGCCATTaGGGTTTAAATGTTCAATGT +
Preference number: 2 (lower is better)
Translates to: SNLEDGARGLSSCCQSMTFSCSH*GLNVQC
Trigger: ACATTGAACATTTAAACCTCAATGGCTGCACGAAAA...TGTCATACTCTGACAGCAGCTGCTTAGGCCACGGGCCCCATCCTCCAGGTTAGA
49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000143180.8
3UTR-3UTR CCA 90 bp AAACAGATAAAACTGGCATTTGCTTGGCAGAGTCTTGAAACCCCAGTGCTAGGTGAACAGCCAGGAGACTaGTCTAACCTGGAGGATGGG +
Preference number: 2 (lower is better)
Translates to: KQIKLAFAWQSLETPVLGEQPGD*SNLEDG
Trigger: CCCATCCTCCAGGTTAGACCAGTCTCCTGGCTGTTC...ACCTAGCACTGGGGTTTCAAGACTCTGCCAAGCAAATGCCAGTTTTATCTGTTT
49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000117537.8
3UTR-3UTR CCA 90 bp AACCTGGAGGATGGGGCCCGTGGCCTAAGCAGCTGCTGTCAGAGTATGACACAGTTCTTTGGTGTCTTATaGAAGTATGTTAACATGCCT +
Preference number: 2 (lower is better)
Translates to: NLEDGARGLSSCCQSMTQFFGVL*KYVNMP
Trigger: AGGCATGTTAACATACTTCCATAAGACACCAAAGAA...CTGTGTCATACTCTGACAGCAGCTGCTTAGGCCACGGGCCCCATCCTCCAGGTT
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000143180.8
3UTR-3UTR CCA 90 bp GGTTCTGAATGTGTTTCAGAGCTTCGTCCTCTAACTGTGTACAACCCCTCAGGACCTTCCTTTGTGATCTaGTCACACCAGGAGAGGTTC +
Preference number: 2 (lower is better)
Translates to: GSECVSELRPLTVYNPSGPSFVI*SHQERF
Trigger: GAACCTCTCCTGGTGTGACCAGATCACAAAGGAAGG...TCCTGAGGGGTTGTACACAGTTAGAGGACGAAGCTCTGAAACACATTCAGAACC
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000143180.8
3UTR-3UTR CCA 90 bp CTTTCACACACACTTCTACATATGAAACTACCAGCCATTCTGAGTTTGCAGTACACTTCCTGCCACTGCTaGTGGAGGGGTGACTGGAGC +
Preference number: 2 (lower is better)
Translates to: LSHTLLHMKLPAILSLQYTSCHC*WRGDWS
Trigger: GCTCCAGTCACCCCTCCACCAGCAGTGGCAGGAAGT...GTACTGCAAACTCAGAATGGCTGGTAGTTTCATATGTAGAAGTGTGTGTGAAAG
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000143180.8
3UTR CAA 90 bp TGCACCACACCACTCTTGCTGTGGATGACACAGACCTGGATTTGCTaGCATCCTAGCAGTGTTAAGGTGAATAGCATTACCAGGTACTGT +
Preference number: 2 (lower is better)
Translates to: CTTPLLLWMTQTWIC*HPSSVKVNSITRYC
Trigger: ACAGTACCTGGTAATGCTATTCACCTTAACACTGCTAGGATGCAAGCAAATCCAGGTCTGTGTCATCCACAGCAAGAGTGGTGTGGTGCA
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000035090.14
ENSMUST00000143180.8
3UTR CAA 90 bp TGCTTCAGTGCTGTCCACCGAGGCAGAAAAAGCTCTTTCTTGCAGTaGTGGTTGGGGTGGTTGCTGGAAGGTTCAGCTACCATTATTAAT +
Preference number: 2 (lower is better)
Translates to: CFSAVHRGRKSSFLQ*WLGWLLEGSATIIN
Trigger: ATTAATAATGGTAGCTGAACCTTCCAGCAACCACCCCAACCACAACTGCAAGAAAGAGCTTTTTCTGCCTCGGTGGACAGCACTGAAGCA
48% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000035090.14
3UTR-3UTR TCA 90 bp AAAAGCTCTTTCTTGCAGTTGTGGTTGGGGTGGTTGCTGGAAGGTTCAGCTACCGGACAGAAATTGCTGTaGATTACATTAGGCCACTGG +
Preference number: 2 (lower is better)
Translates to: KSSFLQLWLGWLLEGSATGQKLL*ITLGHW
Trigger: CCAGTGGCCTAATGTAATTCACAGCAATTTCTGTCC...GGTAGCTGAACCTTCCAGCAACCACCCCAACCACAACTGCAAGAAAGAGCTTTT
48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000035090.14
3UTR-3UTR TCA 90 bp TGGCTTTTTCCTTTTAACAGAAATGCACTGTGTGCTGTGGCATCTGGCAGAGCTGACTTGAACTTGTGCTaGGCAGCACAAAGTGCTAGG +
Preference number: 2 (lower is better)
Translates to: WLFPFNRNALCAVASGRADLNLC*AAQSAR
Trigger: CCTAGCACTTTGTGCTGCTCAGCACAAGTTCAAGTC...AGCTCTGCCAGATGCCACAGCACACAGTGCATTTCTGTTAAAAGGAAAAAGCCA
48% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000035090.14
3UTR-3UTR CCA 90 bp TCTGGAATGTGTGTGTATCTGCTTTCCCTCCCAGAGTGCATCGGAGACACTGCAGACAAGTCCTGCAGATaGACAGAAATTGCTGTGAAT +
Preference number: 2 (lower is better)
Translates to: SGMCVYLLSLPECIGDTADKSCR*TEIAVN
Trigger: ATTCACAGCAATTTCTGTCCATCTGCAGGACTTGTC...TGCAGTGTCTCCGATGCACTCTGGGAGGGAAAGCAGATACACACACATTCCAGA
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000035090.14
3UTR-3UTR CCA 90 bp TGGCTTTTTCCTTTTAACAGAAATGCACTGTGTGCTGTGGCATCTGGCAGAGCTATGCACTGTGTGCTGTaGCATCTGGCAGAGCTTGTA +
Preference number: 2 (lower is better)
Translates to: WLFPFNRNALCAVASGRAMHCVL*HLAELV
Trigger: TACAAGCTCTGCCAGATGCCACAGCACACAGTGCAT...AGCTCTGCCAGATGCCACAGCACACAGTGCATTTCTGTTAAAAGGAAAAAGCCA
48% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000035090.14
ENSMUST00000143180.8
3UTR-3UTR CCA 90 bp CACAAAACAAACTGTCTCGATAATTTTCCTCTTGGGTTTGGCAGTGCTGTAGCCACTATACCTGGCCCATaGCACCAGCAGTCTGCTACT +
Preference number: 2 (lower is better)
Translates to: HKTNCLDNFPLGFGSAVATIPGP*HQQSAT
Trigger: AGTAGCAGACTGCTGGTGCCATGGGCCAGGTATAGT...GGCTACAGCACTGCCAAACCCAAGAGGAAAATTATCGAGACAGTTTGTTTTGTG
48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000035090.14
3UTR-3UTR GCA 90 bp CACTGCATCTATGCAGATGCTTCAGTGCTGTCCACCGAGGCAGAAAAAGCTCTTAAAGTGGACAAGTCCTaGAGATGGACAGAAATTGCT +
Preference number: 2 (lower is better)
Translates to: HCIYADASVLSTEAEKALKVDKS*RWTEIA
Trigger: AGCAATTTCTGTCCATCTGCAGGACTTGTCCACTTT...AAGAGCTTTTTCTGCCTCGGTGGACAGCACTGAAGCATCTGCATAGATGCAGTG
47% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000035090.14
3UTR-3UTR CCA 90 bp CACAAAACAAACTGTCTCGATAATTTTCCTCTTGGGTTTGGCAGTGCTGTAGCCTCAGGCTCGAAGTCATaGTCACTGAGCATCAAGTCC +
Preference number: 2 (lower is better)
Translates to: HKTNCLDNFPLGFGSAVASGSKS*SLSIKS
Trigger: GGACTTGATGCTCAGTGACCATGACTTCGAGCCTGA...GGCTACAGCACTGCCAAACCCAAGAGGAAAATTATCGAGACAGTTTGTTTTGTG
47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000035090.14
3UTR-3UTR TCA 90 bp ATCTATGCAGATGCTTCAGTGCTGTCCACCGAGGCAGAAAAAGCTCTTTCTTGCCTAGCAGTGTTAAGGTaGATAGCATTACCAGGTACT +
Preference number: 2 (lower is better)
Translates to: IYADASVLSTEAEKALSCLAVLR*IALPGT
Trigger: AGTACCTGGTAATGCTATTCACCTTAACACTGCTAG...GCAAGAAAGAGCTTTTTCTGCCTCGGTGGACAGCACTGAAGCATCTGCATAGAT
46% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000035090.14
3UTR-3UTR TCA 90 bp TTGTGGTTGGGGTGGTTGCTGGAAGGTTCAGCTACCATTATTAATATTGAAGGTCACTCTTGCTGTGGATaGCACAGACCTGGATTTGCT +
Preference number: 2 (lower is better)
Translates to: LWLGWLLEGSATIINIEGHSCCG*HRPGFA
Trigger: AGCAAATCCAGGTCTGTGTCATCCACAGCAAGAGTG...ACCTTCAATATTAATAATGGTAGCTGAACCTTCCAGCAACCACCCCAACCACAA
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000035090.14
3UTR-3UTR TCA 90 bp CTTTCACACACACTTCTACATATGAAACTACCAGCCATTCTGAGTTTGCAGTACAGTAGGCATGGACTTTaGCATGAGGAAGCTGAGCCC +
Preference number: 2 (lower is better)
Translates to: LSHTLLHMKLPAILSLQYSRHGL*HEEAEP
Trigger: GGGCTCAGCTTCCTCATGTCAAAGTCCATGCCTACT...GTACTGCAAACTCAGAATGGCTGGTAGTTTCATATGTAGAAGTGTGTGTGAAAG
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000143180.8
3UTR CAA 90 bp TGGGAGCAGGCTGATTATAAAGGGGAACCCTTGAAACTACCATTCTaGGCAAGAACACCTGTAATGTTTTCACCATGGAGAGTCGAGATA +
Preference number: 2 (lower is better)
Translates to: WEQADYKGEPLKLPF*ARTPVMFSPWRVEI
Trigger: TATCTCGACTCTCCATGGTGAAAACATTACAGGTGTTCTTGCCAAGAATGGTAGTTTCAAGGGTTCCCCTTTATAATCAGCCTGCTCCCA
44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000117537.8
3UTR-3UTR TCA 90 bp GTTCAGCTACCATTATTAATATTGAAGGTGGGAGGTCTCAGTGGCACAGAGCAGTTGGGTATGACGAGTTaGCACAAACAGAAAGGTGAA +
Preference number: 2 (lower is better)
Translates to: VQLPLLILKVGGLSGTEQLGMTS*HKQKGE
Trigger: TTCACCTTTCTGTTTGTGTCAACTCGTCATACCCAA...CTGCTCTGTGCCACTGAGACCTCCCACCTTCAATATTAATAATGGTAGCTGAAC
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000035090.14
3UTR-3UTR GCA 90 bp TCTTGCAGTTGTGGTTGGGGTGGTTGCTGGAAGGTTCAGCTACCATTATTAATACAGGCTCTTTTACTCTaGTCAGGTTGTGCTAACACT +
Preference number: 2 (lower is better)
Translates to: SCSCGWGGCWKVQLPLLIQALLL*SGCANT
Trigger: AGTGTTAGCACAACCTGAGCAGAGTAAAAGAGCCTG...TATTAATAATGGTAGCTGAACCTTCCAGCAACCACCCCAACCACAACTGCAAGA
44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000035090.14
3UTR-3UTR CCA 90 bp TGTAAGATGTTCATCCCAATTTCCACAGAGGTGATGCAACTCAAGACAAGTAGTCGCCTGATGAGTCTCTaGAATGTGTGTGTATCTGCT +
Preference number: 2 (lower is better)
Translates to: CKMFIPISTEVMQLKTSSRLMSL*NVCVSA
Trigger: AGCAGATACACACACATTCCAGAGACTCATCAGGCG...ACTACTTGTCTTGAGTTGCATCACCTCTGTGGAAATTGGGATGAACATCTTACA
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000035090.14
3UTR-3UTR GCA 90 bp TGGCTTTTTCCTTTTAACAGAAATGCACTGTGTGCTGTGGCATCTGGCAGAGCTGGAAGTATGTTAACATaGCTTTCACACACACTTCTA +
Preference number: 2 (lower is better)
Translates to: WLFPFNRNALCAVASGRAGSMLT*LSHTLL
Trigger: TAGAAGTGTGTGTGAAAGGCATGTTAACATACTTCC...AGCTCTGCCAGATGCCACAGCACACAGTGCATTTCTGTTAAAAGGAAAAAGCCA
42% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000035090.14
ENSMUST00000143180.8
3UTR-3UTR GCA 90 bp TCTTGCAGTTGTGGTTGGGGTGGTTGCTGGAAGGTTCAGCTACCATTATTAATAGGAAGTATGTTAACATaGCTTTCACACACACTTCTA +
Preference number: 2 (lower is better)
Translates to: SCSCGWGGCWKVQLPLLIGSMLT*LSHTLL
Trigger: TAGAAGTGTGTGTGAAAGGCATGTTAACATACTTCC...TATTAATAATGGTAGCTGAACCTTCCAGCAACCACCCCAACCACAACTGCAAGA
41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000035090.14
3UTR-3UTR TCA 90 bp TTGTGGTTGGGGTGGTTGCTGGAAGGTTCAGCTACCATTATTAATATTGAAGGTTACTGTAATCTGTGCTaGAGTCTTTTACCTGTAATG +
Preference number: 2 (lower is better)
Translates to: LWLGWLLEGSATIINIEGYCNLC*SLLPVM
Trigger: CATTACAGGTAAAAGACTTCAGCACAGATTACAGTA...ACCTTCAATATTAATAATGGTAGCTGAACCTTCCAGCAACCACCCCAACCACAA
40% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000035090.14
3UTR-3UTR GCA 90 bp AAACGTGTCACTCATTTCAAATCTAAGCTGCACTGTTGTCATCTGAAGTCACATATCAAGTCCACCATCTaGAATGAGCCACATCATTCT +
Preference number: 2 (lower is better)
Translates to: KRVTHFKSKLHCCHLKSHIKSTI*NEPHHS
Trigger: AGAATGATGTGGCTCATTGCAGATGGTGGACTTGAT...ATGTGACTTCAGATGACAACAGTGCAGCTTAGATTTGAAATGAGTGACACGTTT
40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000035090.14
3UTR-3UTR GCA 90 bp AAACGTGTCACTCATTTCAAATCTAAGCTGCACTGTTGTCATCTGAAGTCACATGTTACAGTAAGTGCCTaGTGCATACTTAGAAGAGAC +
Preference number: 2 (lower is better)
Translates to: KRVTHFKSKLHCCHLKSHVTVSA*CILRRD
Trigger: GTCTCTTCTAAGTATGCAGCAGGCACTTACTGTAAC...ATGTGACTTCAGATGACAACAGTGCAGCTTAGATTTGAAATGAGTGACACGTTT
40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000035090.14
3UTR-3UTR CCA 90 bp ACTCATTTCAAATCTAAGCTGCACTGTTGTCATCTGAAGTCACATGGACTCAAGGAGGCCTTGTTTCTTTaGTGTCTTATGGAAGTATGT +
Preference number: 2 (lower is better)
Translates to: THFKSKLHCCHLKSHGLKEALFL*CLMEVC
Trigger: ACATACTTCCATAAGACACCAAAGAAACAAGGCCTC...CTTGAGTCCATGTGACTTCAGATGACAACAGTGCAGCTTAGATTTGAAATGAGT
40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000035090.14
3UTR GCA 72 bp AGCTCCAGTCGCTCCAGGCCTCGGCAGTTCTCCAGGTaGTCCAGCGAGGCGTCCGTGACAAGAAGGCAGTTG +
Preference number: 3 (lower is better)
Translates to: SSSRSRPRQFSR*SSEASVTRRQL
Trigger: CAACTGCCTTCTTGTCACGGACGCCTCGCTGGAGCACCTGGAGAACTGCCGAGGCCTGGAGCGACTGGAGCT
64% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000143180.8
3UTR-3UTR CAA 90 bp ACAGAGCCTGTAGCCGGTGGCAGCCCCTGCAGATCTGCACCACGCCATCATCAGGAGCAGGACTGCAGGTaGAGGCTCACCAGCTCGTGG +
Preference number: 3 (lower is better)
Translates to: TEPVAGGSPCRSAPRHHQEQDCR*RLTSSW
Trigger: CCACGAGCTGGTGAGCCTCAACCTGCAGTCCTGCTC...CTGATGATGGCGTGGTGCAGATCTGCAGGGGCTGCCACCGGCTACAGGCTCTGT
63% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000143180.8
3UTR GCA 72 bp CACAGAGCCTGTAGCCGGTGGCAGCCCCTGCAGATCTaGACCACGCCATCATCAGTGATGCGTGAGCAGGAC +
Preference number: 3 (lower is better)
Translates to: HRACSRWQPLQI*TTPSSVMREQD
Trigger: GTCCTGCTCACGCATCACTGATGATGGCGTGGTGCAGATCTGCAGGGGCTGCCACCGGCTACAGGCTCTGTG
62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000143180.8
3UTR GCA 72 bp GACATGAGGAAGCTGAGCCCGCATGCGCTTGATGCCTaGACGGGTGACCTGCTGGCAGTCGTAAAGCTCCAG +
Preference number: 3 (lower is better)
Translates to: DMRKLSPHALDA*TGDLLAVVKLQ
Trigger: CTGGAGCTTTACGACTGCCAGCAGGTCACCCGTGCAGGCATCAAGCGCATGCGGGCTCAGCTTCCTCATGTC
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000143180.8
3UTR CCA 72 bp TTGCTACAACCCGAGAGGCACAGAGCCTGTAGCCGGTaGCAGCCCCTGCAGATCTGCACCACGCCATCATCA +
Preference number: 3 (lower is better)
Translates to: LLQPERHRACSR*QPLQICTTPSS
Trigger: TGATGATGGCGTGGTGCAGATCTGCAGGGGCTGCCACCGGCTACAGGCTCTGTGCCTCTCGGGTTGTAGCAA
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000143180.8
3UTR GCA 72 bp TGCACCACGCCATCATCAGTGATGCGTGAGCAGGACTaGAGGTTGAGGCTCACCAGCTCGTGGCAGTGGTTC +
Preference number: 3 (lower is better)
Translates to: CTTPSSVMREQD*RLRLTSSWQWF
Trigger: GAACCACTGCCACGAGCTGGTGAGCCTCAACCTGCAGTCCTGCTCACGCATCACTGATGATGGCGTGGTGCA
60% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000143180.8
3UTR CCA 72 bp CAGTGGGACAAGCTCAGGGCTTGCAGCTTGGGACAGTaGATGGAGAGCTGGACGAGGGTGCTGTCGGTAATC +
Preference number: 3 (lower is better)
Translates to: QWDKLRACSLGQ*MESWTRVLSVI
Trigger: GATTACCGACAGCACCCTCGTCCAGCTCTCCATCCACTGTCCCAAGCTGCAAGCCCTGAGCTTGTCCCACTG
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000143180.8
3UTR CCA 72 bp GCATCTGCACAGTCGATGTCCACTTCCTGCCACTGCTaGTGGAGGGGTGACTGGAGCAAAGTAGGCATGGAC +
Preference number: 3 (lower is better)
Translates to: ASAQSMSTSCHC*WRGDWSKVGMD
Trigger: GTCCATGCCTACTTTGCTCCAGTCACCCCTCCACCAGCAGTGGCAGGAAGTGGACATCGACTGTGCAGATGC
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000143180.8
3UTR GCA 72 bp TCTAACCTGGAGGATGGGGCCCGTGGCCTAAGCAGCTaGTGTCAGAGTATGACACAGCATCTGCACAGTCGA +
Preference number: 3 (lower is better)
Translates to: SNLEDGARGLSS*CQSMTQHLHSR
Trigger: TCGACTGTGCAGATGCTGTGTCATACTCTGACAGCAGCTGCTTAGGCCACGGGCCCCATCCTCCAGGTTAGA
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000143180.8
3UTR CCA 72 bp TTCCGAGCTAGCAGTGTAAAGCCTGCGTCGGTCAGATaGGAGCACCGGGCAGCCTCCAAAACTTGTAGTCTG +
Preference number: 3 (lower is better)
Translates to: FRASSVKPASVR*EHRAASKTCSL
Trigger: CAGACTACAAGTTTTGGAGGCTGCCCGGTGCTCCCATCTGACCGACGCAGGCTTTACACTGCTAGCTCGGAA
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000143180.8
3UTR CCA 72 bp CTCAGGGCTTGCAGCTTGGGACAGTGGATGGAGAGCTaGACGAGGGTGCTGTCGGTAATCAGGACACATTCT +
Preference number: 3 (lower is better)
Translates to: LRACSLGQWMES*TRVLSVIRTHS
Trigger: AGAATGTGTCCTGATTACCGACAGCACCCTCGTCCAGCTCTCCATCCACTGTCCCAAGCTGCAAGCCCTGAG
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000143180.8
3UTR-3UTR CAA 90 bp TCTAACCTGGAGGATGGGGCCCGTGGCCTAAGCAGCTGCTGTCAGAGTATGACAAAGATGTTCCAGGCCTaGGAGATCTGTGCACATCGG +
Preference number: 3 (lower is better)
Translates to: SNLEDGARGLSSCCQSMTKMFQA*EICAHR
Trigger: CCGATGTGCACAGATCTCCAAGGCCTGGAACATCTT...TGTCATACTCTGACAGCAGCTGCTTAGGCCACGGGCCCCATCCTCCAGGTTAGA
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000143180.8
3UTR-3UTR CAA 90 bp AACCTGGAGGATGGGGCCCGTGGCCTAAGCAGCTGCTGTCAGAGTATGACACAGCAGACCTGGATTTGCTaGCATCCTAGCAGTGTTAAG +
Preference number: 3 (lower is better)
Translates to: NLEDGARGLSSCCQSMTQQTWIC*HPSSVK
Trigger: CTTAACACTGCTAGGATGCAAGCAAATCCAGGTCTG...CTGTGTCATACTCTGACAGCAGCTGCTTAGGCCACGGGCCCCATCCTCCAGGTT
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000143180.8
3UTR GCA 72 bp GTATCTGCTTTCCCTCCCAGAGTGCATCGGAGACACTaGATCTATGCAGATGCTTCAGTGCTGTCCACCGAG +
Preference number: 3 (lower is better)
Translates to: VSAFPPRVHRRH*IYADASVLSTE
Trigger: CTCGGTGGACAGCACTGAAGCATCTGCATAGATGCAGTGTCTCCGATGCACTCTGGGAGGGAAAGCAGATAC
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000035090.14
3UTR CCA 72 bp ATGTCCACTTCCTGCCACTGCTGGTGGAGGGGTGACTaGAGCAAAGTAGGCATGGACTTTGACATGAGGAAG +
Preference number: 3 (lower is better)
Translates to: MSTSCHCWWRGD*SKVGMDFDMRK
Trigger: CTTCCTCATGTCAAAGTCCATGCCTACTTTGCTCCAGTCACCCCTCCACCAGCAGTGGCAGGAAGTGGACAT
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000143180.8
3UTR-3UTR CAA 90 bp GGTTCTGAATGTGTTTCAGAGCTTCGTCCTCTAACTGTGTACAACCCCTCAGGATCCACCCGTTGCCAGTaGCTGCCATCCAGGGCTAAG +
Preference number: 3 (lower is better)
Translates to: GSECVSELRPLTVYNPSGSTRCQ*LPSRAK
Trigger: CTTAGCCCTGGATGGCAGCAACTGGCAACGGGTGGA...TCCTGAGGGGTTGTACACAGTTAGAGGACGAAGCTCTGAAACACATTCAGAACC
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000143180.8
3UTR TCA 72 bp GGGTGGTTTTGGTCCCTAGAGTTGGGTATGACGAGTTaGCACAAACAGAAAGGTGAAGATCCTGCCCCACCC +
Preference number: 3 (lower is better)
Translates to: GWFWSLELGMTS*HKQKGEDPAPP
Trigger: GGGTGGGGCAGGATCTTCACCTTTCTGTTTGTGTCAACTCGTCATACCCAACTCTAGGGACCAAAACCACCC
53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000035090.14
ENSMUST00000143180.8
3UTR GCA 72 bp ACAGCATCCTGGGACAGGGACAGGAGTGCCTGCATTTaGAAAAATCTGACTCCAGTGAGCAAGGTGAGGTGT +
Preference number: 3 (lower is better)
Translates to: TASWDRDRSACI*KNLTPVSKVRC
Trigger: ACACCTCACCTTGCTCACTGGAGTCAGATTTTTGCAAATGCAGGCACTCCTGTCCCTGTCCCAGGATGCTGT
53% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000035090.14
3UTR GCA 72 bp TCAGTGCTGTCCACCGAGGCAGAAAAAGCTCTTTCTTaGAGTTGTGGTTGGGGTGGTTGCTGGAAGGTTCAG +
Preference number: 3 (lower is better)
Translates to: SVLSTEAEKALS*SCGWGGCWKVQ
Trigger: CTGAACCTTCCAGCAACCACCCCAACCACAACTGCAAGAAAGAGCTTTTTCTGCCTCGGTGGACAGCACTGA
53% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000035090.14
3UTR GCA 72 bp TTTCCCTCCCAGAGTGCATCGGAGACACTGCATCTATaGAGATGCTTCAGTGCTGTCCACCGAGGCAGAAAA +
Preference number: 3 (lower is better)
Translates to: FPSQSASETLHL*RCFSAVHRGRK
Trigger: TTTTCTGCCTCGGTGGACAGCACTGAAGCATCTGCATAGATGCAGTGTCTCCGATGCACTCTGGGAGGGAAA
53% GC, longest homopolymer 4 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000035090.14
3UTR GCA 72 bp CGTTCGCCTGATGAGTCTCTGGAATGTGTGTGTATCTaGTTTCCCTCCCAGAGTGCATCGGAGACACTGCAT +
Preference number: 3 (lower is better)
Translates to: RSPDESLECVCI*FPSQSASETLH
Trigger: ATGCAGTGTCTCCGATGCACTCTGGGAGGGAAAGCAGATACACACACATTCCAGAGACTCATCAGGCGAACG
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000035090.14
3UTR TCA 72 bp TGCAGGTTGAGGCTCACCAGCTCGTGGCAGTGGTTCTaGATGTGTTTCAGAGCTTCGTCCTCTAACTGTGTA +
Preference number: 3 (lower is better)
Translates to: CRLRLTSSWQWF*MCFRASSSNCV
Trigger: TACACAGTTAGAGGACGAAGCTCTGAAACACATTCAGAACCACTGCCACGAGCTGGTGAGCCTCAACCTGCA
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000143180.8
3UTR CCA 72 bp TACTCCTTACAAGGAGCCGTTCGCCTGATGAGTCTCTaGAATGTGTGTGTATCTGCTTTCCCTCCCAGAGTG +
Preference number: 3 (lower is better)
Translates to: YSLQGAVRLMSL*NVCVSAFPPRV
Trigger: CACTCTGGGAGGGAAAGCAGATACACACACATTCCAGAGACTCATCAGGCGAACGGCTCCTTGTAAGGAGTA
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000035090.14
3UTR TCA 72 bp AGAGTTGGGTATGACGAGTTGACACAAACAGAAAGGTaGAGATCCTGCCCCACCCAGCTTAGAGGCCTTGTT +
Preference number: 3 (lower is better)
Translates to: RVGYDELTQTER*RSCPTQLRGLV
Trigger: AACAAGGCCTCTAAGCTGGGTGGGGCAGGATCTTCACCTTTCTGTTTGTGTCAACTCGTCATACCCAACTCT
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000035090.14
ENSMUST00000143180.8
3UTR TCA 72 bp TGGCAGAGTCTTGAAACCCCAGTGCTAGGTTGGATGTaGTGTCTTTCTTCTCTCAGATGGGAGCAGGCTGAT +
Preference number: 3 (lower is better)
Translates to: WQSLETPVLGWM*CLSSLRWEQAD
Trigger: ATCAGCCTGCTCCCATCTGAGAGAAGAAAGACATCACATCCAACCTAGCACTGGGGTTTCAAGACTCTGCCA
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000117537.8
3UTR GCA 72 bp TGCATCGGAGACACTGCATCTATGCAGATGCTTCAGTaGTGTCCACCGAGGCAGAAAAAGCTCTTTCTTGCA +
Preference number: 3 (lower is better)
Translates to: CIGDTASMQMLQ*CPPRQKKLFLA
Trigger: TGCAAGAAAGAGCTTTTTCTGCCTCGGTGGACAGCACTGAAGCATCTGCATAGATGCAGTGTCTCCGATGCA
50% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000035090.14
3UTR GCA 72 bp TCTGGAATGTGTGTGTATCTGCTTTCCCTCCCAGAGTaGATCGGAGACACTGCATCTATGCAGATGCTTCAG +
Preference number: 3 (lower is better)
Translates to: SGMCVYLLSLPE*IGDTASMQMLQ
Trigger: CTGAAGCATCTGCATAGATGCAGTGTCTCCGATGCACTCTGGGAGGGAAAGCAGATACACACACATTCCAGA
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000035090.14
3UTR GCA 72 bp TCTACATCTGTCTGGAAGTTAAAAAGATCCACCCGTTaGCAGTTGCTGCCATCCAGGGCTAAGATGTTCCAG +
Preference number: 3 (lower is better)
Translates to: STSVWKLKRSTR*QLLPSRAKMFQ
Trigger: CTGGAACATCTTAGCCCTGGATGGCAGCAACTGGCAACGGGTGGATCTTTTTAACTTCCAGACAGATGTAGA
49% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000143180.8
3UTR-3UTR CAA 90 bp CACAAAACAAACTGTCTCGATAATTTTCCTCTTGGGTTTGGCAGTGCTGTAGCCTTCTTGCAGTTGTGGTaGGGGTGGTTGCTGGAAGGT +
Preference number: 3 (lower is better)
Translates to: HKTNCLDNFPLGFGSAVAFLQLW*GWLLEG
Trigger: ACCTTCCAGCAACCACCCCAACCACAACTGCAAGAA...GGCTACAGCACTGCCAAACCCAAGAGGAAAATTATCGAGACAGTTTGTTTTGTG
48% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 1 transcripts:
ENSMUST00000035090.14
3UTR-3UTR CAA 90 bp GGTTCTGAATGTGTTTCAGAGCTTCGTCCTCTAACTGTGTACAACCCCTCAGGATCCAGGTGTTTCAGCTaGGAACAGAATCTGCTAAGG +
Preference number: 3 (lower is better)
Translates to: GSECVSELRPLTVYNPSGSRCFS*EQNLLR
Trigger: CCTTAGCAGATTCTGTTCCAAGCTGAAACACCTGGA...TCCTGAGGGGTTGTACACAGTTAGAGGACGAAGCTCTGAAACACATTCAGAACC
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000143180.8
3UTR-3UTR CAA 90 bp ACTCATTTCAAATCTAAGCTGCACTGTTGTCATCTGAAGTCACATGGACTCAAGTTGTGGTTGGGGTGGTaGCTGGAAGGTTCAGCTACC +
Preference number: 3 (lower is better)
Translates to: THFKSKLHCCHLKSHGLKLWLGW*LEGSAT
Trigger: GGTAGCTGAACCTTCCAGCAACCACCCCAACCACAA...CTTGAGTCCATGTGACTTCAGATGACAACAGTGCAGCTTAGATTTGAAATGAGT
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000035090.14
3UTR CCA 72 bp ACCGAGGCAGAAAAAGCTCTTTCTTGCAGTTGTGGTTaGGGTGGTTGCTGGAAGGTTCAGCTACCATTATTA +
Preference number: 3 (lower is better)
Translates to: TEAEKALSCSCG*GGCWKVQLPLL
Trigger: TAATAATGGTAGCTGAACCTTCCAGCAACCACCCCAACCACAACTGCAAGAAAGAGCTTTTTCTGCCTCGGT
47% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000035090.14
3UTR CCA 72 bp TGCATACTTAGAAGAGACAGATCAGGCTCGAAGTCATaGTCACTGAGCATCAAGTCCACCATCTGCAATGAG +
Preference number: 3 (lower is better)
Translates to: CILRRDRSGSKS*SLSIKSTICNE
Trigger: CTCATTGCAGATGGTGGACTTGATGCTCAGTGACCATGACTTCGAGCCTGATCTGTCTCTTCTAAGTATGCA
47% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000035090.14
3UTR-3UTR CAA 90 bp CACAAAACAAACTGTCTCGATAATTTTCCTCTTGGGTTTGGCAGTGCTGTAGCCCAGACCTGGATTTGCTaGCATCCTAGCAGTGTTAAG +
Preference number: 3 (lower is better)
Translates to: HKTNCLDNFPLGFGSAVAQTWIC*HPSSVK
Trigger: CTTAACACTGCTAGGATGCAAGCAAATCCAGGTCTG...GGCTACAGCACTGCCAAACCCAAGAGGAAAATTATCGAGACAGTTTGTTTTGTG
46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000035090.14
3UTR-3UTR CAA 90 bp CACAAAACAAACTGTCTCGATAATTTTCCTCTTGGGTTTGGCAGTGCTGTAGCCCAGGAGTGCCTGCATTaGCAAAAATCTGACTCCAGT +
Preference number: 3 (lower is better)
Translates to: HKTNCLDNFPLGFGSAVAQECLH*QKSDSS
Trigger: ACTGGAGTCAGATTTTTGCAAATGCAGGCACTCCTG...GGCTACAGCACTGCCAAACCCAAGAGGAAAATTATCGAGACAGTTTGTTTTGTG
46% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 1 transcripts:
ENSMUST00000035090.14
3UTR TCA 72 bp TCACTCATTTCAAATCTAAGCTGCACTGTTGTCATCTaGAGTCACATGGACTCAAGGGTTGGCCTCGATGTG +
Preference number: 3 (lower is better)
Translates to: SLISNLSCTVVI*SHMDSRVGLDV
Trigger: CACATCGAGGCCAACCCTTGAGTCCATGTGACTTCAGATGACAACAGTGCAGCTTAGATTTGAAATGAGTGA
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000035090.14
3UTR TCA 72 bp AAGTGGACAAGTCCTGCAGATGGACAGAAATTGCTGTaGATTACATTAGGCCACTGGCTTAAGGATCAGGTA +
Preference number: 3 (lower is better)
Translates to: KWTSPADGQKLL*ITLGHWLKDQV
Trigger: TACCTGATCCTTAAGCCAGTGGCCTAATGTAATTCACAGCAATTTCTGTCCATCTGCAGGACTTGTCCACTT
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000035090.14
ENSMUST00000143180.8
3UTR-3UTR CAA 90 bp TGTAAGATGTTCATCCCAATTTCCACAGAGGTGATGCAACTCAAGACAAGTAGTCCCAGCTTAGAGGCCTaGTTTCTTTGGTGTCTTATG +
Preference number: 3 (lower is better)
Translates to: CKMFIPISTEVMQLKTSSPSLEA*FLWCLM
Trigger: CATAAGACACCAAAGAAACAAGGCCTCTAAGCTGGG...ACTACTTGTCTTGAGTTGCATCACCTCTGTGGAAATTGGGATGAACATCTTACA
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000035090.14
3UTR-3UTR CAA 90 bp CTTTCACACACACTTCTACATATGAAACTACCAGCCATTCTGAGTTTGCAGTACCCCAGCTTAGAGGCCTaGTTTCTTTGGTGTCTTATG +
Preference number: 3 (lower is better)
Translates to: LSHTLLHMKLPAILSLQYPSLEA*FLWCLM
Trigger: CATAAGACACCAAAGAAACAAGGCCTCTAAGCTGGG...GTACTGCAAACTCAGAATGGCTGGTAGTTTCATATGTAGAAGTGTGTGTGAAAG
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000035090.14
ENSMUST00000143180.8
3UTR TCA 72 bp AGACCTGGATTTGCTTGCATCCTAGCAGTGTTAAGGTaGATAGCATTACCAGGTACTGTAATCTGTGCTGAA +
Preference number: 3 (lower is better)
Translates to: RPGFACILAVLR*IALPGTVICAE
Trigger: TTCAGCACAGATTACAGTACCTGGTAATGCTATTCACCTTAACACTGCTAGGATGCAAGCAAATCCAGGTCT
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000035090.14
ENSMUST00000143180.8
3UTR TCA 72 bp GGTTGTGCTAACACTGAAGGTGTATATATAGAATGCTaGCAAAGCCAGGTGGGACTTGTATACATAGGTACC +
Preference number: 3 (lower is better)
Translates to: GCANTEGVYIEC*QSQVGLVYIGT
Trigger: GGTACCTATGTATACAAGTCCCACCTGGCTTTGTCAGCATTCTATATATACACCTTCAGTGTTAGCACAACC
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000035090.14
ENSMUST00000143180.8
3UTR CCA 72 bp AAAGCTCTTTCTTGCAGTTGTGGTTGGGGTGGTTGCTaGAAGGTTCAGCTACCATTATTAATATTGAAGGTG +
Preference number: 3 (lower is better)
Translates to: KALSCSCGWGGC*KVQLPLLILKV
Trigger: CACCTTCAATATTAATAATGGTAGCTGAACCTTCCAGCAACCACCCCAACCACAACTGCAAGAAAGAGCTTT
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000035090.14
3UTR GCA 72 bp GAAAAAGCTCTTTCTTGCAGTTGTGGTTGGGGTGGTTaGTGGAAGGTTCAGCTACCATTATTAATATTGAAG +
Preference number: 3 (lower is better)
Translates to: EKALSCSCGWGG*WKVQLPLLILK
Trigger: CTTCAATATTAATAATGGTAGCTGAACCTTCCAGCAACCACCCCAACCACAACTGCAAGAAAGAGCTTTTTC
42% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000035090.14
3UTR-3UTR CAA 90 bp CTTTCACACACACTTCTACATATGAAACTACCAGCCATTCTGAGTTTGCAGTACGCCTTAATTCTGGATTaGCTTAAGGTTCCCGCAAAT +
Preference number: 3 (lower is better)
Translates to: LSHTLLHMKLPAILSLQYALILD*LKVPAN
Trigger: ATTTGCGGGAACCTTAAGCAAATCCAGAATTAAGGC...GTACTGCAAACTCAGAATGGCTGGTAGTTTCATATGTAGAAGTGTGTGTGAAAG
41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000035090.14
ENSMUST00000143180.8
3UTR TCA 72 bp AAGGTGAATAGCATTACCAGGTACTGTAATCTGTGCTaGAGTCTTTTACCTGTAATGTTTTCACCATGGAGA +
Preference number: 3 (lower is better)
Translates to: KVNSITRYCNLC*SLLPVMFSPWR
Trigger: TCTCCATGGTGAAAACATTACAGGTAAAAGACTTCAGCACAGATTACAGTACCTGGTAATGCTATTCACCTT
39% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000035090.14
ENSMUST00000143180.8
3UTR CCA 72 bp ATGCTTTCTGTACCATTCACTTACTTGGGAAAGAAGTaGACTTATCTCCTAATTGTTTTAGAATTTTGCTTG +
Preference number: 3 (lower is better)
Translates to: MLSVPFTYLGKK*TYLLIVLEFCL
Trigger: CAAGCAAAATTCTAAAACAATTAGGAGATAAGTCCACTTCTTTCCCAAGTAAGTGAATGGTACAGAAAGCAT
35% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000035090.14
CDS-3UTR CCA 90 bp GTGACGATGGAACAGCCAGGAGACTGGTCTAACCTGGAGGATGGGGCCCGTGGCCCTGCGTCGGTCAGATaGGAGCACCGGGCAGCCTCC +
Preference number: 4 (lower is better)
Translates to: VTMEQPGDWSNLEDGARGPASVR*EHRAAS
Trigger: GGAGGCTGCCCGGTGCTCCCATCTGACCGACGCAGG...GCCACGGGCCCCATCCTCCAGGTTAGACCAGTCTCCTGGCTGTTCCATCGTCAC
66% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000035090.14
ENSMUST00000117537.8
3UTR CAA 72 bp AGGTGCTCCAGCGAGGCGTCCGTGACAAGAAGGCAGTaGTCCAGCTCCAGCACCCGGAGTCTCTCGTGCCCA +
Preference number: 4 (lower is better)
Translates to: RCSSEASVTRRQ*SSSSTRSLSCP
Trigger: TGGGCACGAGAGACTCCGGGTGCTGGAGCTGGACAACTGCCTTCTTGTCACGGACGCCTCGCTGGAGCACCT
64% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000143180.8
CDS-3UTR TCA 90 bp GTGACGATGGAACAGCCAGGAGACTGGTCTAACCTGGAGGATGGGGCCCGTGGCAGCAGGACTGCAGGTTaGGGCTCACCAGCTCGTGGC +
Preference number: 4 (lower is better)
Translates to: VTMEQPGDWSNLEDGARGSRTAG*GSPARG
Trigger: GCCACGAGCTGGTGAGCCTCAACCTGCAGTCCTGCT...GCCACGGGCCCCATCCTCCAGGTTAGACCAGTCTCCTGGCTGTTCCATCGTCAC
63% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000035090.14
ENSMUST00000117537.8
CDS-3UTR GCA 90 bp GTGACGATGGAACAGCCAGGAGACTGGTCTAACCTGGAGGATGGGGCCCGTGGCGCCCACAGGTGCTGCTaGTCAGGTGCAGGATCCCCT +
Preference number: 4 (lower is better)
Translates to: VTMEQPGDWSNLEDGARGAHRCC*SGAGSP
Trigger: AGGGGATCCTGCACCTGAGCAGCAGCACCTGTGGGC...GCCACGGGCCCCATCCTCCAGGTTAGACCAGTCTCCTGGCTGTTCCATCGTCAC
63% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000035090.14
ENSMUST00000117537.8
CDS-3UTR GCA 90 bp ATGGAACAGCCAGGAGACTGGTCTAACCTGGAGGATGGGGCCCGTGGCCTAAGCGCCCACAGGTGCTGCTaGTCAGGTGCAGGATCCCCT +
Preference number: 4 (lower is better)
Translates to: MEQPGDWSNLEDGARGLSAHRCC*SGAGSP
Trigger: AGGGGATCCTGCACCTGAGCAGCAGCACCTGTGGGC...GCTTAGGCCACGGGCCCCATCCTCCAGGTTAGACCAGTCTCCTGGCTGTTCCAT
62% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000035090.14
ENSMUST00000117537.8
CDS-3UTR GCA 90 bp ATGGAACAGCCAGGAGACTGGTCTAACCTGGAGGATGGGGCCCGTGGCCTAAGCCGTGCCCACAGGTGCTaGTGCTCAGGTGCAGGATCC +
Preference number: 4 (lower is better)
Translates to: MEQPGDWSNLEDGARGLSRAHRC*CSGAGS
Trigger: GGATCCTGCACCTGAGCAGCAGCACCTGTGGGCACG...GCTTAGGCCACGGGCCCCATCCTCCAGGTTAGACCAGTCTCCTGGCTGTTCCAT
62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000035090.14
ENSMUST00000117537.8
CDS-3UTR GCA 90 bp GTGACGATGGAACAGCCAGGAGACTGGTCTAACCTGGAGGATGGGGCCCGTGGCCATGCGCTTGATGCCTaGACGGGTGACCTGCTGGCA +
Preference number: 4 (lower is better)
Translates to: VTMEQPGDWSNLEDGARGHALDA*TGDLLA
Trigger: TGCCAGCAGGTCACCCGTGCAGGCATCAAGCGCATG...GCCACGGGCCCCATCCTCCAGGTTAGACCAGTCTCCTGGCTGTTCCATCGTCAC
62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000035090.14
ENSMUST00000117537.8
CDS-3UTR GCA 90 bp GTGACGATGGAACAGCCAGGAGACTGGTCTAACCTGGAGGATGGGGCCCGTGGCTCGATGTCCACTTCCTaGCACTGCTGGTGGAGGGGT +
Preference number: 4 (lower is better)
Translates to: VTMEQPGDWSNLEDGARGSMSTS*HCWWRG
Trigger: ACCCCTCCACCAGCAGTGGCAGGAAGTGGACATCGA...GCCACGGGCCCCATCCTCCAGGTTAGACCAGTCTCCTGGCTGTTCCATCGTCAC
61% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000035090.14
ENSMUST00000117537.8
CDS-3UTR TCA 90 bp TCGGCAGTTCTCCAGGTGCTCCAGCGAGGCGTCCGTGACAAGAAGGCAGTTGTCAGAGGACTGGATGTGTaGGGGCTGGCGCAATGCTCA +
Preference number: 4 (lower is better)
Translates to: SAVLQVLQRGVRDKKAVVRGLDV*GLAQCS
Trigger: TGAGCATTGCGCCAGCCCTCACACATCCAGTCCTCT...GACAACTGCCTTCTTGTCACGGACGCCTCGCTGGAGCACCTGGAGAACTGCCGA
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000143180.8
CDS-3UTR GCA 90 bp ATGGAACAGCCAGGAGACTGGTCTAACCTGGAGGATGGGGCCCGTGGCCTAAGCCAGCCCCTGCAGATCTaGACCACGCCATCATCAGTG +
Preference number: 4 (lower is better)
Translates to: MEQPGDWSNLEDGARGLSQPLQI*TTPSSV
Trigger: CACTGATGATGGCGTGGTGCAGATCTGCAGGGGCTG...GCTTAGGCCACGGGCCCCATCCTCCAGGTTAGACCAGTCTCCTGGCTGTTCCAT
60% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000035090.14
ENSMUST00000117537.8
3UTR CAA 72 bp ATGAGCTCACAGTGGGACAAGCTCAGGGCTTGCAGCTaGGGACAGTGGATGGAGAGCTGGACGAGGGTGCTG +
Preference number: 4 (lower is better)
Translates to: MSSQWDKLRACS*GQWMESWTRVL
Trigger: CAGCACCCTCGTCCAGCTCTCCATCCACTGTCCCAAGCTGCAAGCCCTGAGCTTGTCCCACTGTGAGCTCAT
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000143180.8
CDS-3UTR CCA 90 bp ATGGAACAGCCAGGAGACTGGTCTAACCTGGAGGATGGGGCCCGTGGCCTAAGCTCAGGGCTTGCAGCTTaGGACAGTGGATGGAGAGCT +
Preference number: 4 (lower is better)
Translates to: MEQPGDWSNLEDGARGLSSGLAA*DSGWRA
Trigger: AGCTCTCCATCCACTGTCCCAAGCTGCAAGCCCTGA...GCTTAGGCCACGGGCCCCATCCTCCAGGTTAGACCAGTCTCCTGGCTGTTCCAT
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000035090.14
ENSMUST00000117537.8
CDS-3UTR CCA 90 bp ATGGAACAGCCAGGAGACTGGTCTAACCTGGAGGATGGGGCCCGTGGCCTAAGCGTGATGAGCTCACAGTaGGACAAGCTCAGGGCTTGC +
Preference number: 4 (lower is better)
Translates to: MEQPGDWSNLEDGARGLSVMSSQ*DKLRAC
Trigger: GCAAGCCCTGAGCTTGTCCCACTGTGAGCTCATCAC...GCTTAGGCCACGGGCCCCATCCTCCAGGTTAGACCAGTCTCCTGGCTGTTCCAT
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000035090.14
ENSMUST00000117537.8
CDS-3UTR TCA 90 bp ATGGAACAGCCAGGAGACTGGTCTAACCTGGAGGATGGGGCCCGTGGCCTAAGCAGTAGGCATGGACTTTaGCATGAGGAAGCTGAGCCC +
Preference number: 4 (lower is better)
Translates to: MEQPGDWSNLEDGARGLSSRHGL*HEEAEP
Trigger: GGGCTCAGCTTCCTCATGTCAAAGTCCATGCCTACT...GCTTAGGCCACGGGCCCCATCCTCCAGGTTAGACCAGTCTCCTGGCTGTTCCAT
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000035090.14
ENSMUST00000117537.8
CDS-3UTR GCA 90 bp GATAGGGTGACGATGGAACAGCCAGGAGACTGGTCTAACCTGGAGGATGGGGCCCCCGTTGCCAGTTGCTaGCATCCAGGGCTAAGATGT +
Preference number: 4 (lower is better)
Translates to: DRVTMEQPGDWSNLEDGAPVASC*HPGLRC
Trigger: ACATCTTAGCCCTGGATGGCAGCAACTGGCAACGGG...GGCCCCATCCTCCAGGTTAGACCAGTCTCCTGGCTGTTCCATCGTCACCCTATC
58% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000035090.14
ENSMUST00000117537.8
CDS-3UTR CCA 90 bp ATGGAACAGCCAGGAGACTGGTCTAACCTGGAGGATGGGGCCCGTGGCCTAAGCCCAAAACTTGTAGTCTaGGGCAGTTCAGGCCCAAGG +
Preference number: 4 (lower is better)
Translates to: MEQPGDWSNLEDGARGLSPKLVV*GSSGPR
Trigger: CCTTGGGCCTGAACTGCCCCAGACTACAAGTTTTGG...GCTTAGGCCACGGGCCCCATCCTCCAGGTTAGACCAGTCTCCTGGCTGTTCCAT
58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000035090.14
ENSMUST00000117537.8
3UTR CAA 72 bp TTCAGGCCCAAGGCTGTGAGAGATGCATCCGTAAGGTaGCTACAACCCGAGAGGCACAGAGCCTGTAGCCGG +
Preference number: 4 (lower is better)
Translates to: FRPKAVRDASVR*LQPERHRACSR
Trigger: CCGGCTACAGGCTCTGTGCCTCTCGGGTTGTAGCAACCTTACGGATGCATCTCTCACAGCCTTGGGCCTGAA
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000143180.8
CDS-3UTR TCA 90 bp ATGGAACAGCCAGGAGACTGGTCTAACCTGGAGGATGGGGCCCGTGGCCTAAGCTCGTGGCAGTGGTTCTaGATGTGTTTCAGAGCTTCG +
Preference number: 4 (lower is better)
Translates to: MEQPGDWSNLEDGARGLSSWQWF*MCFRAS
Trigger: CGAAGCTCTGAAACACATTCAGAACCACTGCCACGA...GCTTAGGCCACGGGCCCCATCCTCCAGGTTAGACCAGTCTCCTGGCTGTTCCAT
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000035090.14
ENSMUST00000117537.8
CDS-3UTR GCA 90 bp AGGAGCCGTTCGCCTGATGAGTCTCTGGAATGTGTGTGTATCTGCTTTCCCTCCTCTCGTGCCCACAGGTaGTGCTGCTCAGGTGCAGGA +
Preference number: 4 (lower is better)
Translates to: RSRSPDESLECVCICFPSSRAHR*CCSGAG
Trigger: TCCTGCACCTGAGCAGCAGCACCTGTGGGCACGAGA...GGAGGGAAAGCAGATACACACACATTCCAGAGACTCATCAGGCGAACGGCTCCT
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000035090.14
CDS-3UTR CCA 90 bp GATAGGGTGACGATGGAACAGCCAGGAGACTGGTCTAACCTGGAGGATGGGGCCAGCCACCGCACCTCTTaGAGATGTTTTCCACCACTC +
Preference number: 4 (lower is better)
Translates to: DRVTMEQPGDWSNLEDGASHRTS*RCFPPL
Trigger: GAGTGGTGGAAAACATCTCCAAGAGGTGCGGTGGCT...GGCCCCATCCTCCAGGTTAGACCAGTCTCCTGGCTGTTCCATCGTCACCCTATC
57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000035090.14
ENSMUST00000117537.8
CDS-3UTR GCA 90 bp AACCCCAGTGCTAGGTTGGATGTGATGTCTTTCTTCTCTCAGATGGGAGCAGGCTCTCGTGCCCACAGGTaGTGCTGCTCAGGTGCAGGA +
Preference number: 4 (lower is better)
Translates to: NPSARLDVMSFFSQMGAGSRAHR*CCSGAG
Trigger: TCCTGCACCTGAGCAGCAGCACCTGTGGGCACGAGA...GCCTGCTCCCATCTGAGAGAAGAAAGACATCACATCCAACCTAGCACTGGGGTT
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000117537.8
CDS-3UTR CCA 90 bp AGGAGCCGTTCGCCTGATGAGTCTCTGGAATGTGTGTGTATCTGCTTTCCCTCCTGCAGCTTGGGACAGTaGATGGAGAGCTGGACGAGG +
Preference number: 4 (lower is better)
Translates to: RSRSPDESLECVCICFPSCSLGQ*MESWTR
Trigger: CCTCGTCCAGCTCTCCATCCACTGTCCCAAGCTGCA...GGAGGGAAAGCAGATACACACACATTCCAGAGACTCATCAGGCGAACGGCTCCT
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000035090.14
3UTR CAA 72 bp TTCCGGCAGCCCTCGCTGATGCCCTTTAAAGAGCTGTaGGTAACAGACACGCAGGACGTGAGATCCAGGTGT +
Preference number: 4 (lower is better)
Translates to: FRQPSLMPFKEL*VTDTQDVRSRC
Trigger: ACACCTGGATCTCACGTCCTGCGTGTCTGTTACCAACAGCTCTTTAAAGGGCATCAGCGAGGGCTGCCGGAA
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000143180.8
CDS-3UTR TCA 90 bp AGGAGCCGTTCGCCTGATGAGTCTCTGGAATGTGTGTGTATCTGCTTTCCCTCCCAGACACGCAGGACGTaGGATCCAGGTGTTTCAGCT +
Preference number: 4 (lower is better)
Translates to: RSRSPDESLECVCICFPSQTRRT*DPGVSA
Trigger: AGCTGAAACACCTGGATCTCACGTCCTGCGTGTCTG...GGAGGGAAAGCAGATACACACACATTCCAGAGACTCATCAGGCGAACGGCTCCT
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000035090.14
CDS-3UTR GCA 90 bp TGGCTTTTTCCTTTTAACAGAAATGCACTGTGTGCTGTGGCATCTGGCAGAGCTGCCGGTGGCAGCCCCTaGAGATCTGCACCACGCCAT +
Preference number: 4 (lower is better)
Translates to: WLFPFNRNALCAVASGRAAGGSP*RSAPRH
Trigger: ATGGCGTGGTGCAGATCTGCAGGGGCTGCCACCGGC...AGCTCTGCCAGATGCCACAGCACACAGTGCATTTCTGTTAAAAGGAAAAAGCCA
54% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 1 transcripts:
ENSMUST00000035090.14
CDS-3UTR GCA 90 bp AACCCCAGTGCTAGGTTGGATGTGATGTCTTTCTTCTCTCAGATGGGAGCAGGCGTGCTGCTGCTCAGGTaGAGGATCCCCTCATCTGTG +
Preference number: 4 (lower is better)
Translates to: NPSARLDVMSFFSQMGAGVLLLR*RIPSSV
Trigger: CACAGATGAGGGGATCCTGCACCTGAGCAGCAGCAC...GCCTGCTCCCATCTGAGAGAAGAAAGACATCACATCCAACCTAGCACTGGGGTT
54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000117537.8
3UTR CAA 72 bp GACAGCATCCTGGGACAGGGACAGGAGTGCCTGCATTaGCAAAAATCTGACTCCAGTGAGCAAGGTGAGGTG +
Preference number: 4 (lower is better)
Translates to: DSILGQGQECLH*QKSDSSEQGEV
Trigger: CACCTCACCTTGCTCACTGGAGTCAGATTTTTGCAAATGCAGGCACTCCTGTCCCTGTCCCAGGATGCTGTC
54% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000035090.14
3UTR CAA 72 bp GCTGTCCACCGAGGCAGAAAAAGCTCTTTCTTGCAGTaGTGGTTGGGGTGGTTGCTGGAAGGTTCAGCTACC +
Preference number: 4 (lower is better)
Translates to: AVHRGRKSSFLQ*WLGWLLEGSAT
Trigger: GGTAGCTGAACCTTCCAGCAACCACCCCAACCACAACTGCAAGAAAGAGCTTTTTCTGCCTCGGTGGACAGC
54% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000035090.14
CDS-3UTR CCA 90 bp AACCCCAGTGCTAGGTTGGATGTGATGTCTTTCTTCTCTCAGATGGGAGCAGGCTGGTGGAGGGGTGACTaGAGCAAAGTAGGCATGGAC +
Preference number: 4 (lower is better)
Translates to: NPSARLDVMSFFSQMGAGWWRGD*SKVGMD
Trigger: GTCCATGCCTACTTTGCTCCAGTCACCCCTCCACCA...GCCTGCTCCCATCTGAGAGAAGAAAGACATCACATCCAACCTAGCACTGGGGTT
53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000117537.8
3UTR CAA 72 bp CCCTTTAGGAGGGAGCGCTCCCATCCGTCCTTCCCTTaGCTTTGTGTGACCACATGCTTTCTGTACCATTCA +
Preference number: 4 (lower is better)
Translates to: PFRRERSHPSFP*LCVTTCFLYHS
Trigger: TGAATGGTACAGAAAGCATGTGGTCACACAAAGCAAAGGGAAGGACGGATGGGAGCGCTCCCTCCTAAAGGG
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000035090.14
CDS-3UTR TCA 90 bp AAACAGATAAAACTGGCATTTGCTTGGCAGAGTCTTGAAACCCCAGTGCTAGGTAGCAGGACTGCAGGTTaGGGCTCACCAGCTCGTGGC +
Preference number: 4 (lower is better)
Translates to: KQIKLAFAWQSLETPVLGSRTAG*GSPARG
Trigger: GCCACGAGCTGGTGAGCCTCAACCTGCAGTCCTGCT...ACCTAGCACTGGGGTTTCAAGACTCTGCCAAGCAAATGCCAGTTTTATCTGTTT
52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000117537.8
CDS-3UTR GCA 90 bp ATCTATGCAGATGCTTCAGTGCTGTCCACCGAGGCAGAAAAAGCTCTTTCTTGCCCACCCGTTGCCAGTTaGTGCCATCCAGGGCTAAGA +
Preference number: 4 (lower is better)
Translates to: IYADASVLSTEAEKALSCPPVAS*CHPGLR
Trigger: TCTTAGCCCTGGATGGCAGCAACTGGCAACGGGTGG...GCAAGAAAGAGCTTTTTCTGCCTCGGTGGACAGCACTGAAGCATCTGCATAGAT
52% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000035090.14
CDS-3UTR GCA 90 bp CCAGTGAGCAAGGTGAGGTGTTGTGAGTCTGAAGCTGCAAATACGTCATTCATTCATGCGCTTGATGCCTaGACGGGTGACCTGCTGGCA +
Preference number: 4 (lower is better)
Translates to: PVSKVRCCESEAANTSFIHALDA*TGDLLA
Trigger: TGCCAGCAGGTCACCCGTGCAGGCATCAAGCGCATG...AATGAATGACGTATTTGCAGCTTCAGACTCACAACACCTCACCTTGCTCACTGG
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000035090.14
CDS-3UTR CCA 90 bp ATCTATGCAGATGCTTCAGTGCTGTCCACCGAGGCAGAAAAAGCTCTTTCTTGCCAGTGGATGGAGAGCTaGACGAGGGTGCTGTCGGTA +
Preference number: 4 (lower is better)
Translates to: IYADASVLSTEAEKALSCQWMES*TRVLSV
Trigger: TACCGACAGCACCCTCGTCCAGCTCTCCATCCACTG...GCAAGAAAGAGCTTTTTCTGCCTCGGTGGACAGCACTGAAGCATCTGCATAGAT
52% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000035090.14
CDS-3UTR CCA 90 bp CAGACCTGGATTTGCTTGCATCCTAGCAGTGTTAAGGTGAATAGCATTACCAGGGCTTGGGACAGTGGATaGAGAGCTGGACGAGGGTGC +
Preference number: 4 (lower is better)
Translates to: QTWICLHPSSVKVNSITRAWDSG*RAGRGC
Trigger: GCACCCTCGTCCAGCTCTCCATCCACTGTCCCAAGC...CCTGGTAATGCTATTCACCTTAACACTGCTAGGATGCAAGCAAATCCAGGTCTG
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000035090.14
CDS-3UTR CCA 90 bp GTTCAGCTACCATTATTAATATTGAAGGTGGGAGGTCTCAGTGGCACAGAGCAGACTTCCTGCCACTGCTaGTGGAGGGGTGACTGGAGC +
Preference number: 4 (lower is better)
Translates to: VQLPLLILKVGGLSGTEQTSCHC*WRGDWS
Trigger: GCTCCAGTCACCCCTCCACCAGCAGTGGCAGGAAGT...CTGCTCTGTGCCACTGAGACCTCCCACCTTCAATATTAATAATGGTAGCTGAAC
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000035090.14
CDS-3UTR CCA 90 bp GTTGGATGTGATGTCTTTCTTCTCTCAGATGGGAGCAGGCTGATTATAAAGGGGACTTCCTGCCACTGCTaGTGGAGGGGTGACTGGAGC +
Preference number: 4 (lower is better)
Translates to: VGCDVFLLSDGSRLIIKGTSCHC*WRGDWS
Trigger: GCTCCAGTCACCCCTCCACCAGCAGTGGCAGGAAGT...CCCCTTTATAATCAGCCTGCTCCCATCTGAGAGAAGAAAGACATCACATCCAAC
52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000117537.8
CDS-3UTR GCA 90 bp TGGGAGCAGGCTGATTATAAAGGGGAACCCTTGAAACTACCATTCTTGGCAAGACCACCCGTTGCCAGTTaGTGCCATCCAGGGCTAAGA +
Preference number: 4 (lower is better)
Translates to: WEQADYKGEPLKLPFLARPPVAS*CHPGLR
Trigger: TCTTAGCCCTGGATGGCAGCAACTGGCAACGGGTGG...TCTTGCCAAGAATGGTAGTTTCAAGGGTTCCCCTTTATAATCAGCCTGCTCCCA
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000117537.8
CDS-3UTR GCA 90 bp CAGACCTGGATTTGCTTGCATCCTAGCAGTGTTAAGGTGAATAGCATTACCAGGGTGCTGCTGCTCAGGTaGAGGATCCCCTCATCTGTG +
Preference number: 4 (lower is better)
Translates to: QTWICLHPSSVKVNSITRVLLLR*RIPSSV
Trigger: CACAGATGAGGGGATCCTGCACCTGAGCAGCAGCAC...CCTGGTAATGCTATTCACCTTAACACTGCTAGGATGCAAGCAAATCCAGGTCTG
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000035090.14
CDS-3UTR CCA 90 bp AAACGTGTCACTCATTTCAAATCTAAGCTGCACTGTTGTCATCTGAAGTCACATCCTGCGTCGGTCAGATaGGAGCACCGGGCAGCCTCC +
Preference number: 4 (lower is better)
Translates to: KRVTHFKSKLHCCHLKSHPASVR*EHRAAS
Trigger: GGAGGCTGCCCGGTGCTCCCATCTGACCGACGCAGG...ATGTGACTTCAGATGACAACAGTGCAGCTTAGATTTGAAATGAGTGACACGTTT
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000035090.14
CDS-3UTR CCA 90 bp TGGCTTTTTCCTTTTAACAGAAATGCACTGTGTGCTGTGGCATCTGGCAGAGCTGACACTGTAGAGGACTaGATGTGTGAGGGCTGGCGC +
Preference number: 4 (lower is better)
Translates to: WLFPFNRNALCAVASGRADTVED*MCEGWR
Trigger: GCGCCAGCCCTCACACATCCAGTCCTCTACAGTGTC...AGCTCTGCCAGATGCCACAGCACACAGTGCATTTCTGTTAAAAGGAAAAAGCCA
51% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000143180.8
3UTR CAA 72 bp TTCAGTGCTGTCCACCGAGGCAGAAAAAGCTCTTTCTaGCAGTTGTGGTTGGGGTGGTTGCTGGAAGGTTCA +
Preference number: 4 (lower is better)
Translates to: FSAVHRGRKSSF*QLWLGWLLEGS
Trigger: TGAACCTTCCAGCAACCACCCCAACCACAACTGCAAGAAAGAGCTTTTTCTGCCTCGGTGGACAGCACTGAA
51% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000035090.14
CDS-3UTR TCA 90 bp TGGGAGCAGGCTGATTATAAAGGGGAACCCTTGAAACTACCATTCTTGGCAAGACAGACACGCAGGACGTaGGATCCAGGTGTTTCAGCT +
Preference number: 4 (lower is better)
Translates to: WEQADYKGEPLKLPFLARQTRRT*DPGVSA
Trigger: AGCTGAAACACCTGGATCTCACGTCCTGCGTGTCTG...TCTTGCCAAGAATGGTAGTTTCAAGGGTTCCCCTTTATAATCAGCCTGCTCCCA
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000117537.8
CDS-3UTR GCA 90 bp GTTGGATGTGATGTCTTTCTTCTCTCAGATGGGAGCAGGCTGATTATAAAGGGGCCCGTTGCCAGTTGCTaGCATCCAGGGCTAAGATGT +
Preference number: 4 (lower is better)
Translates to: VGCDVFLLSDGSRLIIKGPVASC*HPGLRC
Trigger: ACATCTTAGCCCTGGATGGCAGCAACTGGCAACGGG...CCCCTTTATAATCAGCCTGCTCCCATCTGAGAGAAGAAAGACATCACATCCAAC
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000117537.8
CDS-3UTR GCA 90 bp TATAAAGGGGAACCCTTGAAACTACCATTCTTGGCAAGAACACCTGTAATGTTTGCCGGTGGCAGCCCCTaGAGATCTGCACCACGCCAT +
Preference number: 4 (lower is better)
Translates to: YKGEPLKLPFLARTPVMFAGGSP*RSAPRH
Trigger: ATGGCGTGGTGCAGATCTGCAGGGGCTGCCACCGGC...AAACATTACAGGTGTTCTTGCCAAGAATGGTAGTTTCAAGGGTTCCCCTTTATA
50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000117537.8
CDS-3UTR GCA 90 bp TGGGAGCAGGCTGATTATAAAGGGGAACCCTTGAAACTACCATTCTTGGCAAGAGACAAGCTCAGGGCTTaGAGCTTGGGACAGTGGATG +
Preference number: 4 (lower is better)
Translates to: WEQADYKGEPLKLPFLARDKLRA*SLGQWM
Trigger: CATCCACTGTCCCAAGCTGCAAGCCCTGAGCTTGTC...TCTTGCCAAGAATGGTAGTTTCAAGGGTTCCCCTTTATAATCAGCCTGCTCCCA
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000117537.8
CDS-3UTR GCA 90 bp ACTCATTTCAAATCTAAGCTGCACTGTTGTCATCTGAAGTCACATGGACTCAAGCGTGCCCACAGGTGCTaGTGCTCAGGTGCAGGATCC +
Preference number: 4 (lower is better)
Translates to: THFKSKLHCCHLKSHGLKRAHRC*CSGAGS
Trigger: GGATCCTGCACCTGAGCAGCAGCACCTGTGGGCACG...CTTGAGTCCATGTGACTTCAGATGACAACAGTGCAGCTTAGATTTGAAATGAGT
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000035090.14
CDS-3UTR CCA 90 bp ATCTATGCAGATGCTTCAGTGCTGTCCACCGAGGCAGAAAAAGCTCTTTCTTGCAGCCACCGCACCTCTTaGAGATGTTTTCCACCACTC +
Preference number: 4 (lower is better)
Translates to: IYADASVLSTEAEKALSCSHRTS*RCFPPL
Trigger: GAGTGGTGGAAAACATCTCCAAGAGGTGCGGTGGCT...GCAAGAAAGAGCTTTTTCTGCCTCGGTGGACAGCACTGAAGCATCTGCATAGAT
50% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000035090.14
CDS-3UTR CCA 90 bp CACTGCATCTATGCAGATGCTTCAGTGCTGTCCACCGAGGCAGAAAAAGCTCTTCCTTCCTTTGTGATCTaGTCACACCAGGAGAGGTTC +
Preference number: 4 (lower is better)
Translates to: HCIYADASVLSTEAEKALPSFVI*SHQERF
Trigger: GAACCTCTCCTGGTGTGACCAGATCACAAAGGAAGG...AAGAGCTTTTTCTGCCTCGGTGGACAGCACTGAAGCATCTGCATAGATGCAGTG
50% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000035090.14
CDS-3UTR CCA 90 bp AAACAGATAAAACTGGCATTTGCTTGGCAGAGTCTTGAAACCCCAGTGCTAGGTCAGTGGATGGAGAGCTaGACGAGGGTGCTGTCGGTA +
Preference number: 4 (lower is better)
Translates to: KQIKLAFAWQSLETPVLGQWMES*TRVLSV
Trigger: TACCGACAGCACCCTCGTCCAGCTCTCCATCCACTG...ACCTAGCACTGGGGTTTCAAGACTCTGCCAAGCAAATGCCAGTTTTATCTGTTT
50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000117537.8
CDS-3UTR CCA 90 bp GTTCAGCTACCATTATTAATATTGAAGGTGGGAGGTCTCAGTGGCACAGAGCAGTCAGGGCTTGCAGCTTaGGACAGTGGATGGAGAGCT +
Preference number: 4 (lower is better)
Translates to: VQLPLLILKVGGLSGTEQSGLAA*DSGWRA
Trigger: AGCTCTCCATCCACTGTCCCAAGCTGCAAGCCCTGA...CTGCTCTGTGCCACTGAGACCTCCCACCTTCAATATTAATAATGGTAGCTGAAC
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000035090.14
3UTR CAA 72 bp GGTGGTTGCTGGAAGGTTCAGCTACCATTATTAATATaGAAGGTGGGAGGTCTCAGTGGCACAGAGCAGCAG +
Preference number: 4 (lower is better)
Translates to: GGCWKVQLPLLI*KVGGLSGTEQQ
Trigger: CTGCTGCTCTGTGCCACTGAGACCTCCCACCTTCAATATTAATAATGGTAGCTGAACCTTCCAGCAACCACC
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000035090.14
CDS-3UTR CCA 90 bp AAAGGGGAACCCTTGAAACTACCATTCTTGGCAAGAACACCTGTAATGTTTTCAGCTTGGGACAGTGGATaGAGAGCTGGACGAGGGTGC +
Preference number: 4 (lower is better)
Translates to: KGEPLKLPFLARTPVMFSAWDSG*RAGRGC
Trigger: GCACCCTCGTCCAGCTCTCCATCCACTGTCCCAAGC...TGAAAACATTACAGGTGTTCTTGCCAAGAATGGTAGTTTCAAGGGTTCCCCTTT
49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000117537.8
3UTR CAA 72 bp CACCGAGGCAGAAAAAGCTCTTTCTTGCAGTTGTGGTaGGGGTGGTTGCTGGAAGGTTCAGCTACCATTATT +
Preference number: 4 (lower is better)
Translates to: HRGRKSSFLQLW*GWLLEGSATII
Trigger: AATAATGGTAGCTGAACCTTCCAGCAACCACCCCAACCACAACTGCAAGAAAGAGCTTTTTCTGCCTCGGTG
49% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000035090.14
CDS-3UTR TCA 90 bp TGTAAGATGTTCATCCCAATTTCCACAGAGGTGATGCAACTCAAGACAAGTAGTTCCGGCAGCCCTCGCTaGTGCCCTTTAAAGAGCTGT +
Preference number: 4 (lower is better)
Translates to: CKMFIPISTEVMQLKTSSSGSPR*CPLKSC
Trigger: ACAGCTCTTTAAAGGGCATCAGCGAGGGCTGCCGGA...ACTACTTGTCTTGAGTTGCATCACCTCTGTGGAAATTGGGATGAACATCTTACA
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000035090.14
CDS-3UTR TCA 90 bp GGTTGGGGTGGTTGCTGGAAGGTTCAGCTACCATTATTAATATTGAAGGTGGGATCGTGGCAGTGGTTCTaGATGTGTTTCAGAGCTTCG +
Preference number: 4 (lower is better)
Translates to: GWGGCWKVQLPLLILKVGSWQWF*MCFRAS
Trigger: CGAAGCTCTGAAACACATTCAGAACCACTGCCACGA...TCCCACCTTCAATATTAATAATGGTAGCTGAACCTTCCAGCAACCACCCCAACC
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000035090.14
CDS-3UTR GCA 90 bp AAAGGGGAACCCTTGAAACTACCATTCTTGGCAAGAACACCTGTAATGTTTTCACAGCCCCTGCAGATCTaGACCACGCCATCATCAGTG +
Preference number: 4 (lower is better)
Translates to: KGEPLKLPFLARTPVMFSQPLQI*TTPSSV
Trigger: CACTGATGATGGCGTGGTGCAGATCTGCAGGGGCTG...TGAAAACATTACAGGTGTTCTTGCCAAGAATGGTAGTTTCAAGGGTTCCCCTTT
48% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 1 transcripts:
ENSMUST00000117537.8
CDS-3UTR GCA 90 bp AAAGGGGAACCCTTGAAACTACCATTCTTGGCAAGAACACCTGTAATGTTTTCATCGATGTCCACTTCCTaGCACTGCTGGTGGAGGGGT +
Preference number: 4 (lower is better)
Translates to: KGEPLKLPFLARTPVMFSSMSTS*HCWWRG
Trigger: ACCCCTCCACCAGCAGTGGCAGGAAGTGGACATCGA...TGAAAACATTACAGGTGTTCTTGCCAAGAATGGTAGTTTCAAGGGTTCCCCTTT
48% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 1 transcripts:
ENSMUST00000117537.8
CDS-3UTR CCA 90 bp TCTTGCAGTTGTGGTTGGGGTGGTTGCTGGAAGGTTCAGCTACCATTATTAATACCAAAACTTGTAGTCTaGGGCAGTTCAGGCCCAAGG +
Preference number: 4 (lower is better)
Translates to: SCSCGWGGCWKVQLPLLIPKLVV*GSSGPR
Trigger: CCTTGGGCCTGAACTGCCCCAGACTACAAGTTTTGG...TATTAATAATGGTAGCTGAACCTTCCAGCAACCACCCCAACCACAACTGCAAGA
48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000035090.14
CDS-3UTR CCA 90 bp AAAGGGGAACCCTTGAAACTACCATTCTTGGCAAGAACACCTGTAATGTTTTCATGCAGCTTGGGACAGTaGATGGAGAGCTGGACGAGG +
Preference number: 4 (lower is better)
Translates to: KGEPLKLPFLARTPVMFSCSLGQ*MESWTR
Trigger: CCTCGTCCAGCTCTCCATCCACTGTCCCAAGCTGCA...TGAAAACATTACAGGTGTTCTTGCCAAGAATGGTAGTTTCAAGGGTTCCCCTTT
48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000117537.8
CDS-3UTR GCA 90 bp AAACGTGTCACTCATTTCAAATCTAAGCTGCACTGTTGTCATCTGAAGTCACATATGCGTGAGCAGGACTaGAGGTTGAGGCTCACCAGC +
Preference number: 4 (lower is better)
Translates to: KRVTHFKSKLHCCHLKSHMREQD*RLRLTS
Trigger: GCTGGTGAGCCTCAACCTGCAGTCCTGCTCACGCAT...ATGTGACTTCAGATGACAACAGTGCAGCTTAGATTTGAAATGAGTGACACGTTT
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000035090.14
CDS-3UTR GCA 90 bp TGTAAGATGTTCATCCCAATTTCCACAGAGGTGATGCAACTCAAGACAAGTAGTGACAAGCTCAGGGCTTaGAGCTTGGGACAGTGGATG +
Preference number: 4 (lower is better)
Translates to: CKMFIPISTEVMQLKTSSDKLRA*SLGQWM
Trigger: CATCCACTGTCCCAAGCTGCAAGCCCTGAGCTTGTC...ACTACTTGTCTTGAGTTGCATCACCTCTGTGGAAATTGGGATGAACATCTTACA
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000035090.14
CDS-3UTR CCA 90 bp ACTCATTTCAAATCTAAGCTGCACTGTTGTCATCTGAAGTCACATGGACTCAAGGTGATGAGCTCACAGTaGGACAAGCTCAGGGCTTGC +
Preference number: 4 (lower is better)
Translates to: THFKSKLHCCHLKSHGLKVMSSQ*DKLRAC
Trigger: GCAAGCCCTGAGCTTGTCCCACTGTGAGCTCATCAC...CTTGAGTCCATGTGACTTCAGATGACAACAGTGCAGCTTAGATTTGAAATGAGT
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000035090.14
CDS-3UTR CCA 90 bp TGTAAGATGTTCATCCCAATTTCCACAGAGGTGATGCAACTCAAGACAAGTAGTTGGTGGAGGGGTGACTaGAGCAAAGTAGGCATGGAC +
Preference number: 4 (lower is better)
Translates to: CKMFIPISTEVMQLKTSSWWRGD*SKVGMD
Trigger: GTCCATGCCTACTTTGCTCCAGTCACCCCTCCACCA...ACTACTTGTCTTGAGTTGCATCACCTCTGTGGAAATTGGGATGAACATCTTACA
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000035090.14
CDS-3UTR TCA 90 bp TGTAAGATGTTCATCCCAATTTCCACAGAGGTGATGCAACTCAAGACAAGTAGTAGTAGGCATGGACTTTaGCATGAGGAAGCTGAGCCC +
Preference number: 4 (lower is better)
Translates to: CKMFIPISTEVMQLKTSSSRHGL*HEEAEP
Trigger: GGGCTCAGCTTCCTCATGTCAAAGTCCATGCCTACT...ACTACTTGTCTTGAGTTGCATCACCTCTGTGGAAATTGGGATGAACATCTTACA
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000035090.14
3UTR CAA 72 bp AGATCCTGCCCCACCCAGCTTAGAGGCCTTGTTTCTTaGGTGTCTTATGGAAGTATGTTAACATGCCTTTCA +
Preference number: 4 (lower is better)
Translates to: RSCPTQLRGLVS*VSYGSMLTCLS
Trigger: TGAAAGGCATGTTAACATACTTCCATAAGACACCAAAGAAACAAGGCCTCTAAGCTGGGTGGGGCAGGATCT
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000035090.14
ENSMUST00000143180.8
3UTR CAA 72 bp ACTATACCTGGCCCATGGCACCAGCAGTCTGCTACTTaGGTTATAGGATGTACAGTTCAGTGTAATAAATGT +
Preference number: 4 (lower is better)
Translates to: TIPGPWHQQSAT*VIGCTVQCNKC
Trigger: ACATTTATTACACTGAACTGTACATCCTATAACCAAAGTAGCAGACTGCTGGTGCCATGGGCCAGGTATAGT
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000035090.14
CDS-3UTR TCA 90 bp GTTCAGCTACCATTATTAATATTGAAGGTGGGAGGTCTCAGTGGCACAGAGCAGTTTTCGTGCAGCCATTaGGGTTTAAATGTTCAATGT +
Preference number: 4 (lower is better)
Translates to: VQLPLLILKVGGLSGTEQFSCSH*GLNVQC
Trigger: ACATTGAACATTTAAACCTCAATGGCTGCACGAAAA...CTGCTCTGTGCCACTGAGACCTCCCACCTTCAATATTAATAATGGTAGCTGAAC
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000035090.14
CDS-3UTR CCA 90 bp TTGTGGTTGGGGTGGTTGCTGGAAGGTTCAGCTACCATTATTAATATTGAAGGTCCCTCTACATCTGTCTaGAAGTTAAAAAGATCCACC +
Preference number: 4 (lower is better)
Translates to: LWLGWLLEGSATIINIEGPSTSV*KLKRST
Trigger: GGTGGATCTTTTTAACTTCCAGACAGATGTAGAGGG...ACCTTCAATATTAATAATGGTAGCTGAACCTTCCAGCAACCACCCCAACCACAA
42% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000035090.14
3UTR CAA 72 bp GCTGATTATAAAGGGGAACCCTTGAAACTACCATTCTaGGCAAGAACACCTGTAATGTTTTCACCATGGAGA +
Preference number: 4 (lower is better)
Translates to: ADYKGEPLKLPF*ARTPVMFSPWR
Trigger: TCTCCATGGTGAAAACATTACAGGTGTTCTTGCCAAGAATGGTAGTTTCAAGGGTTCCCCTTTATAATCAGC
42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000117537.8
CDS-3UTR CCA 90 bp AAAGGGGAACCCTTGAAACTACCATTCTTGGCAAGAACACCTGTAATGTTTTCACCCTCTACATCTGTCTaGAAGTTAAAAAGATCCACC +
Preference number: 4 (lower is better)
Translates to: KGEPLKLPFLARTPVMFSPSTSV*KLKRST
Trigger: GGTGGATCTTTTTAACTTCCAGACAGATGTAGAGGG...TGAAAACATTACAGGTGTTCTTGCCAAGAATGGTAGTTTCAAGGGTTCCCCTTT
41% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 1 transcripts:
ENSMUST00000117537.8
CDS-3UTR TCA 90 bp TATAAAGGGGAACCCTTGAAACTACCATTCTTGGCAAGAACACCTGTAATGTTTTTTTCGTGCAGCCATTaGGGTTTAAATGTTCAATGT +
Preference number: 4 (lower is better)
Translates to: YKGEPLKLPFLARTPVMFFSCSH*GLNVQC
Trigger: ACATTGAACATTTAAACCTCAATGGCTGCACGAAAA...AAACATTACAGGTGTTCTTGCCAAGAATGGTAGTTTCAAGGGTTCCCCTTTATA
38% GC, longest homopolymer 7 nt, total homopolymer stretches 11 nt.
Matches the following 1 transcripts:
ENSMUST00000117537.8
3UTR CAA 72 bp TTAATTCTGGATTTGCTTAAGGTTCCCGCAAATTTTTaGAGAAGTGTGGATGGACATAATTGGCTTTTTCCT +
Preference number: 4 (lower is better)
Translates to: LILDLLKVPANF*RSVDGHNWLFP
Trigger: AGGAAAAAGCCAATTATGTCCATCCACACTTCTCAAAAAATTTGCGGGAACCTTAAGCAAATCCAGAATTAA
36% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 2 transcripts:
ENSMUST00000035090.14
ENSMUST00000143180.8
CDS-3UTR CAA 90 bp GATAGGGTGACGATGGAACAGCCAGGAGACTGGTCTAACCTGGAGGATGGGGCCAAGCCACCGCACCTCTaGGAGATGTTTTCCACCACT +
Preference number: 5 (lower is better)
Translates to: DRVTMEQPGDWSNLEDGAKPPHL*EMFSTT
Trigger: AGTGGTGGAAAACATCTCCAAGAGGTGCGGTGGCTT...GGCCCCATCCTCCAGGTTAGACCAGTCTCCTGGCTGTTCCATCGTCACCCTATC
57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000035090.14
ENSMUST00000117537.8
CDS-3UTR CAA 90 bp ATGGAACAGCCAGGAGACTGGTCTAACCTGGAGGATGGGGCCCGTGGCCTAAGCTCCAGGTGTTTCAGCTaGGAACAGAATCTGCTAAGG +
Preference number: 5 (lower is better)
Translates to: MEQPGDWSNLEDGARGLSSRCFS*EQNLLR
Trigger: CCTTAGCAGATTCTGTTCCAAGCTGAAACACCTGGA...GCTTAGGCCACGGGCCCCATCCTCCAGGTTAGACCAGTCTCCTGGCTGTTCCAT
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000035090.14
ENSMUST00000117537.8
CDS-3UTR CAA 90 bp AACCCCAGTGCTAGGTTGGATGTGATGTCTTTCTTCTCTCAGATGGGAGCAGGCGTGACAAGAAGGCAGTaGTCCAGCTCCAGCACCCGG +
Preference number: 5 (lower is better)
Translates to: NPSARLDVMSFFSQMGAGVTRRQ*SSSSTR
Trigger: CCGGGTGCTGGAGCTGGACAACTGCCTTCTTGTCAC...GCCTGCTCCCATCTGAGAGAAGAAAGACATCACATCCAACCTAGCACTGGGGTT
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000117537.8
CDS-3UTR CAA 90 bp ATCTATGCAGATGCTTCAGTGCTGTCCACCGAGGCAGAAAAAGCTCTTTCTTGCGAGCAGGACTGCAGGTaGAGGCTCACCAGCTCGTGG +
Preference number: 5 (lower is better)
Translates to: IYADASVLSTEAEKALSCEQDCR*RLTSSW
Trigger: CCACGAGCTGGTGAGCCTCAACCTGCAGTCCTGCTC...GCAAGAAAGAGCTTTTTCTGCCTCGGTGGACAGCACTGAAGCATCTGCATAGAT
54% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000035090.14
CDS-3UTR CAA 90 bp AACCCCAGTGCTAGGTTGGATGTGATGTCTTTCTTCTCTCAGATGGGAGCAGGCAAGATGTTCCAGGCCTaGGAGATCTGTGCACATCGG +
Preference number: 5 (lower is better)
Translates to: NPSARLDVMSFFSQMGAGKMFQA*EICAHR
Trigger: CCGATGTGCACAGATCTCCAAGGCCTGGAACATCTT...GCCTGCTCCCATCTGAGAGAAGAAAGACATCACATCCAACCTAGCACTGGGGTT
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000117537.8
CDS-3UTR CAA 90 bp GTTGGATGTGATGTCTTTCTTCTCTCAGATGGGAGCAGGCTGATTATAAAGGGGTCCACCCGTTGCCAGTaGCTGCCATCCAGGGCTAAG +
Preference number: 5 (lower is better)
Translates to: VGCDVFLLSDGSRLIIKGSTRCQ*LPSRAK
Trigger: CTTAGCCCTGGATGGCAGCAACTGGCAACGGGTGGA...CCCCTTTATAATCAGCCTGCTCCCATCTGAGAGAAGAAAGACATCACATCCAAC
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000117537.8
CDS-3UTR CAA 90 bp CTTTCTTCTCTCAGATGGGAGCAGGCTGATTATAAAGGGGAACCCTTGAAACTAGAGCAGGACTGCAGGTaGAGGCTCACCAGCTCGTGG +
Preference number: 5 (lower is better)
Translates to: LSSLRWEQADYKGEPLKLEQDCR*RLTSSW
Trigger: CCACGAGCTGGTGAGCCTCAACCTGCAGTCCTGCTC...TAGTTTCAAGGGTTCCCCTTTATAATCAGCCTGCTCCCATCTGAGAGAAGAAAG
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000117537.8
CDS-3UTR CAA 90 bp AAAAGCTCTTTCTTGCAGTTGTGGTTGGGGTGGTTGCTGGAAGGTTCAGCTACCAAGCCACCGCACCTCTaGGAGATGTTTTCCACCACT +
Preference number: 5 (lower is better)
Translates to: KSSFLQLWLGWLLEGSATKPPHL*EMFSTT
Trigger: AGTGGTGGAAAACATCTCCAAGAGGTGCGGTGGCTT...GGTAGCTGAACCTTCCAGCAACCACCCCAACCACAACTGCAAGAAAGAGCTTTT
51% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 1 transcripts:
ENSMUST00000035090.14
CDS-3UTR CAA 90 bp AGGAGCCGTTCGCCTGATGAGTCTCTGGAATGTGTGTGTATCTGCTTTCCCTCCTCCAGGTGTTTCAGCTaGGAACAGAATCTGCTAAGG +
Preference number: 5 (lower is better)
Translates to: RSRSPDESLECVCICFPSSRCFS*EQNLLR
Trigger: CCTTAGCAGATTCTGTTCCAAGCTGAAACACCTGGA...GGAGGGAAAGCAGATACACACACATTCCAGAGACTCATCAGGCGAACGGCTCCT
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000035090.14
CDS-3UTR CAA 90 bp TCTGGAATGTGTGTGTATCTGCTTTCCCTCCCAGAGTGCATCGGAGACACTGCACCCTTTAAAGAGCTGTaGGTAACAGACACGCAGGAC +
Preference number: 5 (lower is better)
Translates to: SGMCVYLLSLPECIGDTAPFKEL*VTDTQD
Trigger: GTCCTGCGTGTCTGTTACCAACAGCTCTTTAAAGGG...TGCAGTGTCTCCGATGCACTCTGGGAGGGAAAGCAGATACACACACATTCCAGA
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000035090.14
CDS-3UTR CAA 90 bp CTTTCACACACACTTCTACATATGAAACTACCAGCCATTCTGAGTTTGCAGTACTCCACCCGTTGCCAGTaGCTGCCATCCAGGGCTAAG +
Preference number: 5 (lower is better)
Translates to: LSHTLLHMKLPAILSLQYSTRCQ*LPSRAK
Trigger: CTTAGCCCTGGATGGCAGCAACTGGCAACGGGTGGA...GTACTGCAAACTCAGAATGGCTGGTAGTTTCATATGTAGAAGTGTGTGTGAAAG
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000035090.14
CDS-3UTR CAA 90 bp TGTAAGATGTTCATCCCAATTTCCACAGAGGTGATGCAACTCAAGACAAGTAGTGTGACAAGAAGGCAGTaGTCCAGCTCCAGCACCCGG +
Preference number: 5 (lower is better)
Translates to: CKMFIPISTEVMQLKTSSVTRRQ*SSSSTR
Trigger: CCGGGTGCTGGAGCTGGACAACTGCCTTCTTGTCAC...ACTACTTGTCTTGAGTTGCATCACCTCTGTGGAAATTGGGATGAACATCTTACA
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000035090.14
CDS-3UTR CAA 90 bp AAAAGCTCTTTCTTGCAGTTGTGGTTGGGGTGGTTGCTGGAAGGTTCAGCTACCTCCTTGGGTAGCTTCTaGTTGATAAGGCCATCATCA +
Preference number: 5 (lower is better)
Translates to: KSSFLQLWLGWLLEGSATSLGSF*LIRPSS
Trigger: TGATGATGGCCTTATCAACAAGAAGCTACCCAAGGA...GGTAGCTGAACCTTCCAGCAACCACCCCAACCACAACTGCAAGAAAGAGCTTTT
48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000035090.14
CDS-3UTR CAA 90 bp GGTTCTGAATGTGTTTCAGAGCTTCGTCCTCTAACTGTGTACAACCCCTCAGGATCCTTGGGTAGCTTCTaGTTGATAAGGCCATCATCA +
Preference number: 5 (lower is better)
Translates to: GSECVSELRPLTVYNPSGSLGSF*LIRPSS
Trigger: TGATGATGGCCTTATCAACAAGAAGCTACCCAAGGA...TCCTGAGGGGTTGTACACAGTTAGAGGACGAAGCTCTGAAACACATTCAGAACC
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000143180.8
CDS-3UTR CAA 90 bp CTTTCTTCTCTCAGATGGGAGCAGGCTGATTATAAAGGGGAACCCTTGAAACTACCCTTTAAAGAGCTGTaGGTAACAGACACGCAGGAC +
Preference number: 5 (lower is better)
Translates to: LSSLRWEQADYKGEPLKLPFKEL*VTDTQD
Trigger: GTCCTGCGTGTCTGTTACCAACAGCTCTTTAAAGGG...TAGTTTCAAGGGTTCCCCTTTATAATCAGCCTGCTCCCATCTGAGAGAAGAAAG
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000117537.8
CDS-3UTR CAA 90 bp CTTTCACACACACTTCTACATATGAAACTACCAGCCATTCTGAGTTTGCAGTACAAGATGTTCCAGGCCTaGGAGATCTGTGCACATCGG +
Preference number: 5 (lower is better)
Translates to: LSHTLLHMKLPAILSLQYKMFQA*EICAHR
Trigger: CCGATGTGCACAGATCTCCAAGGCCTGGAACATCTT...GTACTGCAAACTCAGAATGGCTGGTAGTTTCATATGTAGAAGTGTGTGTGAAAG
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000035090.14
CDS-3UTR CAA 90 bp AAAGGGGAACCCTTGAAACTACCATTCTTGGCAAGAACACCTGTAATGTTTTCATCCTTGGGTAGCTTCTaGTTGATAAGGCCATCATCA +
Preference number: 5 (lower is better)
Translates to: KGEPLKLPFLARTPVMFSSLGSF*LIRPSS
Trigger: TGATGATGGCCTTATCAACAAGAAGCTACCCAAGGA...TGAAAACATTACAGGTGTTCTTGCCAAGAATGGTAGTTTCAAGGGTTCCCCTTT
42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000117537.8
CDS-3UTR CAA 90 bp CCAGTGAGCAAGGTGAGGTGTTGTGAGTCTGAAGCTGCAAATACGTCATTCATTATTTTCGTGCAGCCATaGAGGTTTAAATGTTCAATG +
Preference number: 5 (lower is better)
Translates to: PVSKVRCCESEAANTSFIIFVQP*RFKCSM
Trigger: CATTGAACATTTAAACCTCAATGGCTGCACGAAAAT...AATGAATGACGTATTTGCAGCTTCAGACTCACAACACCTCACCTTGCTCACTGG
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000035090.14
CDS-3UTR CAA 90 bp TGGGAGCAGGCTGATTATAAAGGGGAACCCTTGAAACTACCATTCTTGGCAAGAATTTTCGTGCAGCCATaGAGGTTTAAATGTTCAATG +
Preference number: 5 (lower is better)
Translates to: WEQADYKGEPLKLPFLARIFVQP*RFKCSM
Trigger: CATTGAACATTTAAACCTCAATGGCTGCACGAAAAT...TCTTGCCAAGAATGGTAGTTTCAAGGGTTCCCCTTTATAATCAGCCTGCTCCCA
42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000117537.8
CDS CAA 90 bp AGGACTGGATGTGTGAGGGCTGGCGCAATGCTCAAGAGGAGCTCCTaGGGTAGCTTCTTGTTGATAAGGCCATCATCACTGTTTGAGAAA +
Preference number: 6 (lower is better)
Translates to: RTGCVRAGAMLKRSS*GSFLLIRPSSLFEK
Trigger: TTTCTCAAACAGTGATGATGGCCTTATCAACAAGAAGCTACCCAAGGAGCTCCTCTTGAGCATTGCGCCAGCCCTCACACATCCAGTCCT
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000143180.8
CDS CAA 72 bp GGCGCAATGCTCAAGAGGAGCTCCTTGGGTAGCTTCTaGTTGATAAGGCCATCATCACTGTTTGAGAAAACC +
Preference number: 6 (lower is better)
Translates to: GAMLKRSSLGSF*LIRPSSLFEKT
Trigger: GGTTTTCTCAAACAGTGATGATGGCCTTATCAACAAGAAGCTACCCAAGGAGCTCCTCTTGAGCATTGCGCC
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000143180.8
CDS CAA 72 bp ATGTCCAAGAAGGAGAATATTCTCAAGAGGAGCTCCTaGGGTAGCTTCTTGTTGATAAGGCCATCATCACTG +
Preference number: 6 (lower is better)
Translates to: MSKKENILKRSS*GSFLLIRPSSL
Trigger: CAGTGATGATGGCCTTATCAACAAGAAGCTACCCAAGGAGCTCCTCTTGAGAATATTCTCCTTCTTGGACAT
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000035090.14
ENSMUST00000117537.8
CDS CAA 72 bp GAGAATATTCTCAAGAGGAGCTCCTTGGGTAGCTTCTaGTTGATAAGGCCATCATCACTGTTTGAGAAAACC +
Preference number: 6 (lower is better)
Translates to: ENILKRSSLGSF*LIRPSSLFEKT
Trigger: GGTTTTCTCAAACAGTGATGATGGCCTTATCAACAAGAAGCTACCCAAGGAGCTCCTCTTGAGAATATTCTC
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000035090.14
ENSMUST00000117537.8