RADAR | Search for sensor designs | Human genes | Mouse genes | Code

Pregenerated sensors for FBH1 (Mus musculus)

Ensembl gene IDs: ENSMUSG00000058594

Ensembl transcript IDs: ENSMUST00000071564.14, ENSMUST00000131893.2

Found 196 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).

Type Sensor Details
3UTR CCA 90 bp CCAGTTCCCTGGCCTGAGGCATTTGGAGGACAGGCAAGTGGGAACTaGCTCTCTGTAAGGAACGGGGAAATGGCAGGTCCAACTCTGGTT +
Preference number: 1 (lower is better)
Translates to: PVPWPEAFGGQASGN*LSVRNGEMAGPTLV
Trigger: AACCAGAGTTGGACCTGCCATTTCCCCGTTCCTTACAGAGAGCCAGTTCCCACTTGCCTGTCCTCCAAATGCCTCAGGCCAGGGAACTGG
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000071564.14
3UTR TCA 90 bp TGGCAGGTCCAACTCTGGTTGCTATCTTCCTCCTCAGAGATGCTGTaGTTGAACTCAGAGTCTCCTGTGAGCAGAAATGCAGCCCAGAAT +
Preference number: 1 (lower is better)
Translates to: WQVQLWLLSSSSEML*LNSESPVSRNAAQN
Trigger: ATTCTGGGCTGCATTTCTGCTCACAGGAGACTCTGAGTTCAATCACAGCATCTCTGAGGAGGAAGATAGCAACCAGAGTTGGACCTGCCA
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000071564.14
3UTR-3UTR TCA 90 bp TCAAAAGAACTTCTTCCAGTTCCCTGGCCTGAGGCATTTGGAGGACAGGCAAGTACTCAGAGTCTCCTGTaGGCAGAAATGCAGCCCAGA +
Preference number: 2 (lower is better)
Translates to: SKELLPVPWPEAFGGQASTQSLL*AEMQPR
Trigger: TCTGGGCTGCATTTCTGCTCACAGGAGACTCTGAGT...ACTTGCCTGTCCTCCAAATGCCTCAGGCCAGGGAACTGGAAGAAGTTCTTTTGA
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000071564.14
3UTR-3UTR GCA 90 bp TCAAAAGAACTTCTTCCAGTTCCCTGGCCTGAGGCATTTGGAGGACAGGCAAGTTCCTGTGAGCAGAAATaGAGCCCAGAATGGCTCCTT +
Preference number: 2 (lower is better)
Translates to: SKELLPVPWPEAFGGQASSCEQK*SPEWLL
Trigger: AAGGAGCCATTCTGGGCTGCATTTCTGCTCACAGGA...ACTTGCCTGTCCTCCAAATGCCTCAGGCCAGGGAACTGGAAGAAGTTCTTTTGA
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000071564.14
3UTR CCA 72 bp TGGCCTGAGGCATTTGGAGGACAGGCAAGTGGGAACTaGCTCTCTGTAAGGAACGGGGAAATGGCAGGTCCA +
Preference number: 3 (lower is better)
Translates to: WPEAFGGQASGN*LSVRNGEMAGP
Trigger: TGGACCTGCCATTTCCCCGTTCCTTACAGAGAGCCAGTTCCCACTTGCCTGTCCTCCAAATGCCTCAGGCCA
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000071564.14
CDS-3UTR TCA 90 bp CCCTGGCCTGAGGCATTTGGAGGACAGGCAAGTGGGAACTGGCTCTCTGTAAGGGCTTCCTCAAAGCAGTaGGCCCGCTTCCTGGCAGGC +
Preference number: 4 (lower is better)
Translates to: PWPEAFGGQASGNWLSVRASSKQ*ARFLAG
Trigger: GCCTGCCAGGAAGCGGGCTCACTGCTTTGAGGAAGC...CCTTACAGAGAGCCAGTTCCCACTTGCCTGTCCTCCAAATGCCTCAGGCCAGGG
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000071564.14
CDS-3UTR CCA 90 bp ACAGGCAAGTGGGAACTGGCTCTCTGTAAGGAACGGGGAAATGGCAGGTCCAACGGCACGCACCTGCTCTaGGGAGGCAGTCAGGAATGC +
Preference number: 4 (lower is better)
Translates to: TGKWELALCKERGNGRSNGTHLL*GGSQEC
Trigger: GCATTCCTGACTGCCTCCCCAGAGCAGGTGCGTGCC...GTTGGACCTGCCATTTCCCCGTTCCTTACAGAGAGCCAGTTCCCACTTGCCTGT
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000071564.14
CDS-3UTR CCA 90 bp GGCAAGTGGGAACTGGCTCTCTGTAAGGAACGGGGAAATGGCAGGTCCAACTCTAGTGAGCCCGCTTCCTaGCAGGCTGTGCAGATCCTG +
Preference number: 4 (lower is better)
Translates to: GKWELALCKERGNGRSNSSEPAS*QAVQIL
Trigger: CAGGATCTGCACAGCCTGCCAGGAAGCGGGCTCACT...AGAGTTGGACCTGCCATTTCCCCGTTCCTTACAGAGAGCCAGTTCCCACTTGCC
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000071564.14
CDS-3UTR CCA 90 bp CCCTGGCCTGAGGCATTTGGAGGACAGGCAAGTGGGAACTGGCTCTCTGTAAGGTGTCGTTCACACAGCTaGAGAGGAGCACCATGGCTG +
Preference number: 4 (lower is better)
Translates to: PWPEAFGGQASGNWLSVRCRSHS*RGAPWL
Trigger: CAGCCATGGTGCTCCTCTCCAGCTGTGTGAACGACA...CCTTACAGAGAGCCAGTTCCCACTTGCCTGTCCTCCAAATGCCTCAGGCCAGGG
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000071564.14
CDS-3UTR TCA 90 bp GGCAAGTGGGAACTGGCTCTCTGTAAGGAACGGGGAAATGGCAGGTCCAACTCTGGTGGCACACCAGGCTaGGATTCCAGTAGAGGTCCT +
Preference number: 4 (lower is better)
Translates to: GKWELALCKERGNGRSNSGGTPG*DSSRGP
Trigger: AGGACCTCTACTGGAATCTCAGCCTGGTGTGCCACC...AGAGTTGGACCTGCCATTTCCCCGTTCCTTACAGAGAGCCAGTTCCCACTTGCC
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000071564.14
CDS-3UTR GCA 90 bp AGTGGGAACTGGCTCTCTGTAAGGAACGGGGAAATGGCAGGTCCAACTCTGGTTGGAGGCAGTCAGGAATaGCAAAGGCCCGATGCGCTG +
Preference number: 4 (lower is better)
Translates to: SGNWLSVRNGEMAGPTLVGGSQE*QRPDAL
Trigger: CAGCGCATCGGGCCTTTGGCATTCCTGACTGCCTCC...AACCAGAGTTGGACCTGCCATTTCCCCGTTCCTTACAGAGAGCCAGTTCCCACT
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000071564.14
CDS-3UTR CCA 90 bp AGTGGGAACTGGCTCTCTGTAAGGAACGGGGAAATGGCAGGTCCAACTCTGGTTAGCTTCCCCCGGCACTaGGGAGCACTGGGACAAACT +
Preference number: 4 (lower is better)
Translates to: SGNWLSVRNGEMAGPTLVSFPRH*GALGQT
Trigger: AGTTTGTCCCAGTGCTCCCCAGTGCCGGGGGAAGCT...AACCAGAGTTGGACCTGCCATTTCCCCGTTCCTTACAGAGAGCCAGTTCCCACT
57% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000071564.14
CDS-3UTR TCA 90 bp GTAAGGAACGGGGAAATGGCAGGTCCAACTCTGGTTGCTATCTTCCTCCTCAGATCACCCTCAGCGTCCTaGCAGCTGTCCTGGCCAACA +
Preference number: 4 (lower is better)
Translates to: VRNGEMAGPTLVAIFLLRSPSAS*QLSWPT
Trigger: TGTTGGCCAGGACAGCTGTCAGGACGCTGAGGGTGA...TCTGAGGAGGAAGATAGCAACCAGAGTTGGACCTGCCATTTCCCCGTTCCTTAC
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000071564.14
CDS-3UTR TCA 90 bp GGGGAAATGGCAGGTCCAACTCTGGTTGCTATCTTCCTCCTCAGAGATGCTGTGCACTCTGCTCCACCATaGCTCTCTGCCCGTGGCTAT +
Preference number: 4 (lower is better)
Translates to: GEMAGPTLVAIFLLRDAVHSAPP*LSARGY
Trigger: ATAGCCACGGGCAGAGAGTCATGGTGGAGCAGAGTG...CACAGCATCTCTGAGGAGGAAGATAGCAACCAGAGTTGGACCTGCCATTTCCCC
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000071564.14
CDS-3UTR TCA 90 bp CTCAGAGATGCTGTGATTGAACTCAGAGTCTCCTGTGAGCAGAAATGCAGCCCAGCGCTGCTCTGCACATaGGTGGCAGAGGTAGCCACC +
Preference number: 4 (lower is better)
Translates to: LRDAVIELRVSCEQKCSPALLCT*VAEVAT
Trigger: GGTGGCTACCTCTGCCACTCATGTGCAGAGCAGCGC...TGGGCTGCATTTCTGCTCACAGGAGACTCTGAGTTCAATCACAGCATCTCTGAG
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000071564.14
CDS-3UTR CCA 90 bp CCCTGGCCTGAGGCATTTGGAGGACAGGCAAGTGGGAACTGGCTCTCTGTAAGGTTGGTACAGTGCTGGTaGCCAGCTAGGAAGAACTCA +
Preference number: 4 (lower is better)
Translates to: PWPEAFGGQASGNWLSVRLVQCW*PARKNS
Trigger: TGAGTTCTTCCTAGCTGGCCACCAGCACTGTACCAA...CCTTACAGAGAGCCAGTTCCCACTTGCCTGTCCTCCAAATGCCTCAGGCCAGGG
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000071564.14
CDS-3UTR CCA 90 bp CCCTGGCCTGAGGCATTTGGAGGACAGGCAAGTGGGAACTGGCTCTCTGTAAGGTTTTGGCCATGTCATTaGTACAGTGCTGGTGGCCAG +
Preference number: 4 (lower is better)
Translates to: PWPEAFGGQASGNWLSVRFWPCH*YSAGGQ
Trigger: CTGGCCACCAGCACTGTACCAATGACATGGCCAAAA...CCTTACAGAGAGCCAGTTCCCACTTGCCTGTCCTCCAAATGCCTCAGGCCAGGG
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000071564.14
CDS-3UTR CCA 90 bp GGCAAGTGGGAACTGGCTCTCTGTAAGGAACGGGGAAATGGCAGGTCCAACTCTCTCAGGGTCAACACTTaGGGAGCATTTGGTGGTGGC +
Preference number: 4 (lower is better)
Translates to: GKWELALCKERGNGRSNSLRVNT*GAFGGG
Trigger: GCCACCACCAAATGCTCCCCAAGTGTTGACCCTGAG...AGAGTTGGACCTGCCATTTCCCCGTTCCTTACAGAGAGCCAGTTCCCACTTGCC
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000071564.14
CDS-3UTR CCA 90 bp CCCTGGCCTGAGGCATTTGGAGGACAGGCAAGTGGGAACTGGCTCTCTGTAAGGTCCCCTTCTCCCTCATaGCATAAAGGAGCACAGCTA +
Preference number: 4 (lower is better)
Translates to: PWPEAFGGQASGNWLSVRSPSPS*HKGAQL
Trigger: TAGCTGTGCTCCTTTATGCCATGAGGGAGAAGGGGA...CCTTACAGAGAGCCAGTTCCCACTTGCCTGTCCTCCAAATGCCTCAGGCCAGGG
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000071564.14
CDS-3UTR CCA 90 bp CCAGTTCCCTGGCCTGAGGCATTTGGAGGACAGGCAAGTGGGAACTGGCTCTCTCGTGACTGTAGGCCATaGAATGGAAGGTCTTGCAGA +
Preference number: 4 (lower is better)
Translates to: PVPWPEAFGGQASGNWLSRDCRP*NGRSCR
Trigger: TCTGCAAGACCTTCCATTCCATGGCCTACAGTCACG...AGAGAGCCAGTTCCCACTTGCCTGTCCTCCAAATGCCTCAGGCCAGGGAACTGG
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000071564.14
CDS-3UTR TCA 90 bp ACAGGCAAGTGGGAACTGGCTCTCTGTAAGGAACGGGGAAATGGCAGGTCCAACTTGTCCATCTCTGACTaGAGGGCTGAGTCACAGCCA +
Preference number: 4 (lower is better)
Translates to: TGKWELALCKERGNGRSNLSISD*RAESQP
Trigger: TGGCTGTGACTCAGCCCTTCAGTCAGAGATGGACAA...GTTGGACCTGCCATTTCCCCGTTCCTTACAGAGAGCCAGTTCCCACTTGCCTGT
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000071564.14
CDS-3UTR TCA 90 bp GGCAAGTGGGAACTGGCTCTCTGTAAGGAACGGGGAAATGGCAGGTCCAACTCTGGAAGGTCTTGCAGATaGCGTTGCTGGGGAAGACAA +
Preference number: 4 (lower is better)
Translates to: GKWELALCKERGNGRSNSGRSCR*RCWGRQ
Trigger: TTGTCTTCCCCAGCAACGTCATCTGCAAGACCTTCC...AGAGTTGGACCTGCCATTTCCCCGTTCCTTACAGAGAGCCAGTTCCCACTTGCC
54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000071564.14
CDS-3UTR GCA 90 bp GCTCTCTGTAAGGAACGGGGAAATGGCAGGTCCAACTCTGGTTGCTATCTTCCTAAAGGCCCGATGCGCTaGTCTGCACATGAGTGGCAG +
Preference number: 4 (lower is better)
Translates to: ALCKERGNGRSNSGCYLPKGPMR*SAHEWQ
Trigger: CTGCCACTCATGTGCAGAGCAGCGCATCGGGCCTTT...AGGAAGATAGCAACCAGAGTTGGACCTGCCATTTCCCCGTTCCTTACAGAGAGC
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000071564.14
CDS-3UTR GCA 90 bp GTAAGGAACGGGGAAATGGCAGGTCCAACTCTGGTTGCTATCTTCCTCCTCAGAAAGAGCAGGGCCTCCTaGCTGGGCAGCACTATGTCT +
Preference number: 4 (lower is better)
Translates to: VRNGEMAGPTLVAIFLLRKSRAS*LGSTMS
Trigger: AGACATAGTGCTGCCCAGGCAGGAGGCCCTGCTCTT...TCTGAGGAGGAAGATAGCAACCAGAGTTGGACCTGCCATTTCCCCGTTCCTTAC
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000071564.14
CDS-3UTR CCA 90 bp TCAAAAGAACTTCTTCCAGTTCCCTGGCCTGAGGCATTTGGAGGACAGGCAAGTGGCACTGGGGAGCACTaGGACAAACTGTCCTCTGCC +
Preference number: 4 (lower is better)
Translates to: SKELLPVPWPEAFGGQASGTGEH*DKLSSA
Trigger: GGCAGAGGACAGTTTGTCCCAGTGCTCCCCAGTGCC...ACTTGCCTGTCCTCCAAATGCCTCAGGCCAGGGAACTGGAAGAAGTTCTTTTGA
54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000071564.14
CDS-3UTR CCA 90 bp AAGTGGGAACTGGCTCTCTGTAAGGAACGGGGAAATGGCAGGTCCAACTCTGGTGCCTGCAAATGTGGCTaGGCACTTCCTGACAAGGCA +
Preference number: 4 (lower is better)
Translates to: KWELALCKERGNGRSNSGACKCG*ALPDKA
Trigger: TGCCTTGTCAGGAAGTGCCCAGCCACATTTGCAGGC...ACCAGAGTTGGACCTGCCATTTCCCCGTTCCTTACAGAGAGCCAGTTCCCACTT
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000071564.14
CDS-3UTR CCA 90 bp GGCAAGTGGGAACTGGCTCTCTGTAAGGAACGGGGAAATGGCAGGTCCAACTCTCACTTGGGGAGCATTTaGTGGTGGCCGTGTATCGTA +
Preference number: 4 (lower is better)
Translates to: GKWELALCKERGNGRSNSHLGSI*WWPCIV
Trigger: TACGATACACGGCCACCACCAAATGCTCCCCAAGTG...AGAGTTGGACCTGCCATTTCCCCGTTCCTTACAGAGAGCCAGTTCCCACTTGCC
54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000071564.14
CDS-3UTR CCA 90 bp AAGTGGGAACTGGCTCTCTGTAAGGAACGGGGAAATGGCAGGTCCAACTCTGGTTGGTGTCCACAGGGATaGTGTTGTTGCACTGCCCCA +
Preference number: 4 (lower is better)
Translates to: KWELALCKERGNGRSNSGWCPQG*CCCTAP
Trigger: TGGGGCAGTGCAACAACACCATCCCTGTGGACACCA...ACCAGAGTTGGACCTGCCATTTCCCCGTTCCTTACAGAGAGCCAGTTCCCACTT
54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000071564.14
CDS-3UTR TCA 90 bp CTCAGAGATGCTGTGATTGAACTCAGAGTCTCCTGTGAGCAGAAATGCAGCCCATGGAGCTGGGTCTCCTaGGGCAGAAGAGCAGATGCT +
Preference number: 4 (lower is better)
Translates to: LRDAVIELRVSCEQKCSPWSWVS*GRRADA
Trigger: AGCATCTGCTCTTCTGCCTCAGGAGACCCAGCTCCA...TGGGCTGCATTTCTGCTCACAGGAGACTCTGAGTTCAATCACAGCATCTCTGAG
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000071564.14
CDS-3UTR GCA 90 bp AAGTGGGAACTGGCTCTCTGTAAGGAACGGGGAAATGGCAGGTCCAACTCTGGTGTAGTTGTTGCCGCATaGACGCCTCAGCCTCCAAAA +
Preference number: 4 (lower is better)
Translates to: KWELALCKERGNGRSNSGVVVAA*TPQPPK
Trigger: TTTTGGAGGCTGAGGCGTGCATGCGGCAACAACTAC...ACCAGAGTTGGACCTGCCATTTCCCCGTTCCTTACAGAGAGCCAGTTCCCACTT
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000071564.14
CDS-3UTR GCA 90 bp GGCAAGTGGGAACTGGCTCTCTGTAAGGAACGGGGAAATGGCAGGTCCAACTCTAGGCAGAAGAGCAGATaGTGGATGTCGTTCACACAG +
Preference number: 4 (lower is better)
Translates to: GKWELALCKERGNGRSNSRQKSR*WMSFTQ
Trigger: CTGTGTGAACGACATCCAGCATCTGCTCTTCTGCCT...AGAGTTGGACCTGCCATTTCCCCGTTCCTTACAGAGAGCCAGTTCCCACTTGCC
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000071564.14
CDS-3UTR GCA 90 bp AGTGGGAACTGGCTCTCTGTAAGGAACGGGGAAATGGCAGGTCCAACTCTGGTTTCCACCATGACTCTCTaGCCGTGGCTATTCTTGCAC +
Preference number: 4 (lower is better)
Translates to: SGNWLSVRNGEMAGPTLVSTMTL*PWLFLH
Trigger: GTGCAAGAATAGCCACGGGCAGAGAGTCATGGTGGA...AACCAGAGTTGGACCTGCCATTTCCCCGTTCCTTACAGAGAGCCAGTTCCCACT
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000071564.14
CDS-3UTR GCA 90 bp ACAGGCAAGTGGGAACTGGCTCTCTGTAAGGAACGGGGAAATGGCAGGTCCAACAGCTGGGCAAGATTATaGCTGGCACAAGGCACTTTC +
Preference number: 4 (lower is better)
Translates to: TGKWELALCKERGNGRSNSWARL*LAQGTF
Trigger: GAAAGTGCCTTGTGCCAGGCATAATCTTGCCCAGCT...GTTGGACCTGCCATTTCCCCGTTCCTTACAGAGAGCCAGTTCCCACTTGCCTGT
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000071564.14
CDS-3UTR CCA 90 bp ACAGGCAAGTGGGAACTGGCTCTCTGTAAGGAACGGGGAAATGGCAGGTCCAACCAAACTCTAACCCTTTaGCTTTGTGCACGGTGCCCA +
Preference number: 4 (lower is better)
Translates to: TGKWELALCKERGNGRSNQTLTL*LCARCP
Trigger: TGGGCACCGTGCACAAAGCCAAAGGGTTAGAGTTTG...GTTGGACCTGCCATTTCCCCGTTCCTTACAGAGAGCCAGTTCCCACTTGCCTGT
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000071564.14
CDS-3UTR CCA 90 bp GGCAAGTGGGAACTGGCTCTCTGTAAGGAACGGGGAAATGGCAGGTCCAACTCTGGGCAAGATTATGCCTaGCACAAGGCACTTTCACGA +
Preference number: 4 (lower is better)
Translates to: GKWELALCKERGNGRSNSGQDYA*HKALSR
Trigger: TCGTGAAAGTGCCTTGTGCCAGGCATAATCTTGCCC...AGAGTTGGACCTGCCATTTCCCCGTTCCTTACAGAGAGCCAGTTCCCACTTGCC
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000071564.14
CDS-3UTR TCA 90 bp AAGTGGGAACTGGCTCTCTGTAAGGAACGGGGAAATGGCAGGTCCAACTCTGGTAAGAAGCCCATAGTATaGGTCAGGCAAGGGATCAGG +
Preference number: 4 (lower is better)
Translates to: KWELALCKERGNGRSNSGKKPIV*VRQGIR
Trigger: CCTGATCCCTTGCCTGACTCATACTATGGGCTTCTT...ACCAGAGTTGGACCTGCCATTTCCCCGTTCCTTACAGAGAGCCAGTTCCCACTT
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000071564.14
CDS-3UTR TCA 90 bp GGGGAAATGGCAGGTCCAACTCTGGTTGCTATCTTCCTCCTCAGAGATGCTGTGTGGCCGTGTATCGTATaGGGTTCAGCACACATAGGT +
Preference number: 4 (lower is better)
Translates to: GEMAGPTLVAIFLLRDAVWPCIV*GSAHIG
Trigger: ACCTATGTGTGCTGAACCTCATACGATACACGGCCA...CACAGCATCTCTGAGGAGGAAGATAGCAACCAGAGTTGGACCTGCCATTTCCCC
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000071564.14
CDS-3UTR TCA 90 bp ACAGGCAAGTGGGAACTGGCTCTCTGTAAGGAACGGGGAAATGGCAGGTCCAACTACAGAAACCTGCTCTaGGACCACTTCTCAGCATAC +
Preference number: 4 (lower is better)
Translates to: TGKWELALCKERGNGRSNYRNLL*DHFSAY
Trigger: GTATGCTGAGAAGTGGTCTCAGAGCAGGTTTCTGTA...GTTGGACCTGCCATTTCCCCGTTCCTTACAGAGAGCCAGTTCCCACTTGCCTGT
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000071564.14
CDS-3UTR TCA 90 bp AAGTGGGAACTGGCTCTCTGTAAGGAACGGGGAAATGGCAGGTCCAACTCTGGTCGTTCTTCCTCTGGCTaGAGAAGGGTCCAAATGTCA +
Preference number: 4 (lower is better)
Translates to: KWELALCKERGNGRSNSGRSSSG*RRVQMS
Trigger: TGACATTTGGACCCTTCTTCAGCCAGAGGAAGAACG...ACCAGAGTTGGACCTGCCATTTCCCCGTTCCTTACAGAGAGCCAGTTCCCACTT
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000071564.14
CDS-3UTR GCA 90 bp GGCAAGTGGGAACTGGCTCTCTGTAAGGAACGGGGAAATGGCAGGTCCAACTCTCCCGGTGCCTGCAAATaGCATAATTTTTACCACCTG +
Preference number: 4 (lower is better)
Translates to: GKWELALCKERGNGRSNSPGACK*HNFYHL
Trigger: CAGGTGGTAAAAATTATGGCATTTGCAGGCACCGGG...AGAGTTGGACCTGCCATTTCCCCGTTCCTTACAGAGAGCCAGTTCCCACTTGCC
52% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000071564.14
CDS-3UTR GCA 90 bp GCTCTCTGTAAGGAACGGGGAAATGGCAGGTCCAACTCTGGTTGCTATCTTCCTGTCCCAGAGTCGGCTTaGTTCAAGGACACCATTCAG +
Preference number: 4 (lower is better)
Translates to: ALCKERGNGRSNSGCYLPVPESA*FKDTIQ
Trigger: CTGAATGGTGTCCTTGAAGCAAGCCGACTCTGGGAC...AGGAAGATAGCAACCAGAGTTGGACCTGCCATTTCCCCGTTCCTTACAGAGAGC
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000071564.14
CDS-3UTR GCA 90 bp TCAAAAGAACTTCTTCCAGTTCCCTGGCCTGAGGCATTTGGAGGACAGGCAAGTATGGTGTTGTTGCACTaGCCCACACAGCAGTGGACC +
Preference number: 4 (lower is better)
Translates to: SKELLPVPWPEAFGGQASMVLLH*PTQQWT
Trigger: GGTCCACTGCTGTGTGGGGCAGTGCAACAACACCAT...ACTTGCCTGTCCTCCAAATGCCTCAGGCCAGGGAACTGGAAGAAGTTCTTTTGA
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000071564.14
CDS-3UTR CCA 90 bp GCTCTCTGTAAGGAACGGGGAAATGGCAGGTCCAACTCTGGTTGCTATCTTCCTATTTCCCTCCACAGGTaGCACACCAGGCTGAGATTC +
Preference number: 4 (lower is better)
Translates to: ALCKERGNGRSNSGCYLPISLHR*HTRLRF
Trigger: GAATCTCAGCCTGGTGTGCCACCTGTGGAGGGAAAT...AGGAAGATAGCAACCAGAGTTGGACCTGCCATTTCCCCGTTCCTTACAGAGAGC
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000071564.14
CDS-3UTR CCA 90 bp CTCAGAGATGCTGTGATTGAACTCAGAGTCTCCTGTGAGCAGAAATGCAGCCCAGGTCTCGGTGACATCTaGCATGGTCACTGTGGAGCT +
Preference number: 4 (lower is better)
Translates to: LRDAVIELRVSCEQKCSPGLGDI*HGHCGA
Trigger: AGCTCCACAGTGACCATGCCAGATGTCACCGAGACC...TGGGCTGCATTTCTGCTCACAGGAGACTCTGAGTTCAATCACAGCATCTCTGAG
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000071564.14
CDS-3UTR CCA 90 bp CCCTGGCCTGAGGCATTTGGAGGACAGGCAAGTGGGAACTGGCTCTCTGTAAGGAGAGGCTCCATCTTATaGTTCAGAATCAGCTGTTGT +
Preference number: 4 (lower is better)
Translates to: PWPEAFGGQASGNWLSVRRGSIL*FRISCC
Trigger: ACAACAGCTGATTCTGAACCATAAGATGGAGCCTCT...CCTTACAGAGAGCCAGTTCCCACTTGCCTGTCCTCCAAATGCCTCAGGCCAGGG
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000071564.14
CDS-3UTR CCA 90 bp ACAGGCAAGTGGGAACTGGCTCTCTGTAAGGAACGGGGAAATGGCAGGTCCAACATGACTCTCTGCCCGTaGCTATTCTTGCACCAAATG +
Preference number: 4 (lower is better)
Translates to: TGKWELALCKERGNGRSNMTLCP*LFLHQM
Trigger: CATTTGGTGCAAGAATAGCCACGGGCAGAGAGTCAT...GTTGGACCTGCCATTTCCCCGTTCCTTACAGAGAGCCAGTTCCCACTTGCCTGT
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000071564.14
CDS-3UTR CCA 90 bp GCAGGTCCAACTCTGGTTGCTATCTTCCTCCTCAGAGATGCTGTGATTGAACTCGCTGGGGTACAGTCCTaGGCCTCATCCACAAAGATG +
Preference number: 4 (lower is better)
Translates to: AGPTLVAIFLLRDAVIELAGVQS*ASSTKM
Trigger: CATCTTTGTGGATGAGGCCCAGGACTGTACCCCAGC...GAGTTCAATCACAGCATCTCTGAGGAGGAAGATAGCAACCAGAGTTGGACCTGC
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000071564.14
CDS-3UTR CCA 90 bp AGTGGGAACTGGCTCTCTGTAAGGAACGGGGAAATGGCAGGTCCAACTCTGGTTTATGTTCATGATAGCTaGGGTACAGTCCTGGGCCTC +
Preference number: 4 (lower is better)
Translates to: SGNWLSVRNGEMAGPTLVYVHDS*GTVLGL
Trigger: GAGGCCCAGGACTGTACCCCAGCTATCATGAACATA...AACCAGAGTTGGACCTGCCATTTCCCCGTTCCTTACAGAGAGCCAGTTCCCACT
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000071564.14
CDS-3UTR CCA 90 bp GGCAAGTGGGAACTGGCTCTCTGTAAGGAACGGGGAAATGGCAGGTCCAACTCTCAAACACATTGGCATTaGTCCTGGACAGCAGAGCTA +
Preference number: 4 (lower is better)
Translates to: GKWELALCKERGNGRSNSQTHWH*SWTAEL
Trigger: TAGCTCTGCTGTCCAGGACCAATGCCAATGTGTTTG...AGAGTTGGACCTGCCATTTCCCCGTTCCTTACAGAGAGCCAGTTCCCACTTGCC
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000071564.14
CDS-3UTR CCA 90 bp AAGTGGGAACTGGCTCTCTGTAAGGAACGGGGAAATGGCAGGTCCAACTCTGGTCCTCCGTTCTTCCTCTaGCTGAAGAAGGGTCCAAAT +
Preference number: 4 (lower is better)
Translates to: KWELALCKERGNGRSNSGPPFFL*LKKGPN
Trigger: ATTTGGACCCTTCTTCAGCCAGAGGAAGAACGGAGG...ACCAGAGTTGGACCTGCCATTTCCCCGTTCCTTACAGAGAGCCAGTTCCCACTT
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000071564.14
CDS-3UTR TCA 90 bp GCTCTCTGTAAGGAACGGGGAAATGGCAGGTCCAACTCTGGTTGCTATCTTCCTAGTATAAGGTCTCGGTaGCATCTGGCATGGTCACTG +
Preference number: 4 (lower is better)
Translates to: ALCKERGNGRSNSGCYLPSIRSR*HLAWSL
Trigger: CAGTGACCATGCCAGATGTCACCGAGACCTTATACT...AGGAAGATAGCAACCAGAGTTGGACCTGCCATTTCCCCGTTCCTTACAGAGAGC
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000071564.14
CDS-3UTR TCA 90 bp GGGGAAATGGCAGGTCCAACTCTGGTTGCTATCTTCCTCCTCAGAGATGCTGTGAAAACGACTCAACTCTaGAGTGAGGAAGCTGGGCAA +
Preference number: 4 (lower is better)
Translates to: GEMAGPTLVAIFLLRDAVKTTQL*SEEAGQ
Trigger: TTGCCCAGCTTCCTCACTTCAGAGTTGAGTCGTTTT...CACAGCATCTCTGAGGAGGAAGATAGCAACCAGAGTTGGACCTGCCATTTCCCC
51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000071564.14
CDS-3UTR TCA 90 bp CTCAGAGATGCTGTGATTGAACTCAGAGTCTCCTGTGAGCAGAAATGCAGCCCAGGGATTTGGTCATTATaGGCCGCTTCTTGGCACGAG +
Preference number: 4 (lower is better)
Translates to: LRDAVIELRVSCEQKCSPGIWSL*AASWHE
Trigger: CTCGTGCCAAGAAGCGGCTCATAATGACCAAATCCC...TGGGCTGCATTTCTGCTCACAGGAGACTCTGAGTTCAATCACAGCATCTCTGAG
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000071564.14
CDS-3UTR GCA 90 bp AGTGGGAACTGGCTCTCTGTAAGGAACGGGGAAATGGCAGGTCCAACTCTGGTTTCGACCACTGTAAGATaGTTCCGCTTAAACCGTCTC +
Preference number: 4 (lower is better)
Translates to: SGNWLSVRNGEMAGPTLVSTTVR*FRLNRL
Trigger: GAGACGGTTTAAGCGGAAGCATCTTACAGTGGTCGA...AACCAGAGTTGGACCTGCCATTTCCCCGTTCCTTACAGAGAGCCAGTTCCCACT
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000071564.14
CDS-3UTR GCA 90 bp GCAGGTCCAACTCTGGTTGCTATCTTCCTCCTCAGAGATGCTGTGATTGAACTCCTTCACTTGGCAGCCTaGAAATGTGGCTGGGCACTT +
Preference number: 4 (lower is better)
Translates to: AGPTLVAIFLLRDAVIELLHLAA*KCGWAL
Trigger: AAGTGCCCAGCCACATTTGCAGGCTGCCAAGTGAAG...GAGTTCAATCACAGCATCTCTGAGGAGGAAGATAGCAACCAGAGTTGGACCTGC
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000071564.14
CDS-3UTR GCA 90 bp GGGGAAATGGCAGGTCCAACTCTGGTTGCTATCTTCCTCCTCAGAGATGCTGTGAAGCTCTGCCTGCTTTaGGATGCTCTTGTTGAACGT +
Preference number: 4 (lower is better)
Translates to: GEMAGPTLVAIFLLRDAVKLCLL*DALVER
Trigger: ACGTTCAACAAGAGCATCGCAAAGCAGGCAGAGCTT...CACAGCATCTCTGAGGAGGAAGATAGCAACCAGAGTTGGACCTGCCATTTCCCC
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000071564.14
CDS-3UTR GCA 90 bp AAGTGGGAACTGGCTCTCTGTAAGGAACGGGGAAATGGCAGGTCCAACTCTGGTAAGACAAGCTCTGCCTaGTTTGCGATGCTCTTGTTG +
Preference number: 4 (lower is better)
Translates to: KWELALCKERGNGRSNSGKTSSA*FAMLLL
Trigger: CAACAAGAGCATCGCAAAGCAGGCAGAGCTTGTCTT...ACCAGAGTTGGACCTGCCATTTCCCCGTTCCTTACAGAGAGCCAGTTCCCACTT
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000071564.14
CDS-3UTR GCA 90 bp AAGTGGGAACTGGCTCTCTGTAAGGAACGGGGAAATGGCAGGTCCAACTCTGGTTTCAGTTTCTCACTCTaGTCCACCATGACTCTCTGC +
Preference number: 4 (lower is better)
Translates to: KWELALCKERGNGRSNSGFSFSL*STMTLC
Trigger: GCAGAGAGTCATGGTGGAGCAGAGTGAGAAACTGAA...ACCAGAGTTGGACCTGCCATTTCCCCGTTCCTTACAGAGAGCCAGTTCCCACTT
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000071564.14
CDS-3UTR GCA 90 bp GGGGAAATGGCAGGTCCAACTCTGGTTGCTATCTTCCTCCTCAGAGATGCTGTGAACCCTTTGGCTTTGTaGACGGTGCCCAAAATGTAC +
Preference number: 4 (lower is better)
Translates to: GEMAGPTLVAIFLLRDAVNPLAL*TVPKMY
Trigger: GTACATTTTGGGCACCGTGCACAAAGCCAAAGGGTT...CACAGCATCTCTGAGGAGGAAGATAGCAACCAGAGTTGGACCTGCCATTTCCCC
51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000071564.14
CDS-3UTR CCA 90 bp GTAAGGAACGGGGAAATGGCAGGTCCAACTCTGGTTGCTATCTTCCTCCTCAGATCATTGGTACAGTGCTaGTGGCCAGCTAGGAAGAAC +
Preference number: 4 (lower is better)
Translates to: VRNGEMAGPTLVAIFLLRSLVQC*WPARKN
Trigger: GTTCTTCCTAGCTGGCCACCAGCACTGTACCAATGA...TCTGAGGAGGAAGATAGCAACCAGAGTTGGACCTGCCATTTCCCCGTTCCTTAC
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000071564.14
CDS-3UTR CCA 90 bp GCAGGTCCAACTCTGGTTGCTATCTTCCTCCTCAGAGATGCTGTGATTGAACTCGCCTGGCCAGACAGATaGCTCCTCTGTAACTTTGGT +
Preference number: 4 (lower is better)
Translates to: AGPTLVAIFLLRDAVIELAWPDR*LLCNFG
Trigger: ACCAAAGTTACAGAGGAGCCATCTGTCTGGCCAGGC...GAGTTCAATCACAGCATCTCTGAGGAGGAAGATAGCAACCAGAGTTGGACCTGC
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000071564.14
CDS-3UTR CCA 90 bp GCTCTCTGTAAGGAACGGGGAAATGGCAGGTCCAACTCTGGTTGCTATCTTCCTAGATGTTTTCTTGCCTaGCCAGACAGATGGCTCCTC +
Preference number: 4 (lower is better)
Translates to: ALCKERGNGRSNSGCYLPRCFLA*PDRWLL
Trigger: GAGGAGCCATCTGTCTGGCCAGGCAAGAAAACATCT...AGGAAGATAGCAACCAGAGTTGGACCTGCCATTTCCCCGTTCCTTACAGAGAGC
51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000071564.14
CDS-3UTR CCA 90 bp CCCTGGCCTGAGGCATTTGGAGGACAGGCAAGTGGGAACTGGCTCTCTGTAAGGCCATCATGTGTCATTTaGTATGCCTCTTCTTTGCAT +
Preference number: 4 (lower is better)
Translates to: PWPEAFGGQASGNWLSVRPSCVI*YASSLH
Trigger: ATGCAAAGAAGAGGCATACCAAATGACACATGATGG...CCTTACAGAGAGCCAGTTCCCACTTGCCTGTCCTCCAAATGCCTCAGGCCAGGG
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000071564.14
CDS-3UTR CCA 90 bp AAGTGGGAACTGGCTCTCTGTAAGGAACGGGGAAATGGCAGGTCCAACTCTGGTCCTCATCCACAAAGATaGCGTCAAAAGAGGCAAGCA +
Preference number: 4 (lower is better)
Translates to: KWELALCKERGNGRSNSGPHPQR*RQKRQA
Trigger: TGCTTGCCTCTTTTGACGCCATCTTTGTGGATGAGG...ACCAGAGTTGGACCTGCCATTTCCCCGTTCCTTACAGAGAGCCAGTTCCCACTT
51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000071564.14
CDS-3UTR CCA 90 bp CCCTGGCCTGAGGCATTTGGAGGACAGGCAAGTGGGAACTGGCTCTCTGTAAGGAAAGATCTTCCCACATaGCTGAGACAGAACTATGTT +
Preference number: 4 (lower is better)
Translates to: PWPEAFGGQASGNWLSVRKDLPT*LRQNYV
Trigger: AACATAGTTCTGTCTCAGCCATGTGGGAAGATCTTT...CCTTACAGAGAGCCAGTTCCCACTTGCCTGTCCTCCAAATGCCTCAGGCCAGGG
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000071564.14
CDS-3UTR TCA 90 bp GCAGGTCCAACTCTGGTTGCTATCTTCCTCCTCAGAGATGCTGTGATTGAACTCTCTCCATTATCCACCTaGGGCAGAGTACAACTGCTC +
Preference number: 4 (lower is better)
Translates to: AGPTLVAIFLLRDAVIELSPLST*GRVQLL
Trigger: GAGCAGTTGTACTCTGCCTCAGGTGGATAATGGAGA...GAGTTCAATCACAGCATCTCTGAGGAGGAAGATAGCAACCAGAGTTGGACCTGC
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000071564.14
CDS-3UTR TCA 90 bp GGGGAAATGGCAGGTCCAACTCTGGTTGCTATCTTCCTCCTCAGAGATGCTGTGATCTTCCCACATGGCTaGGACAGAACTATGTTCATG +
Preference number: 4 (lower is better)
Translates to: GEMAGPTLVAIFLLRDAVIFPHG*DRTMFM
Trigger: CATGAACATAGTTCTGTCTCAGCCATGTGGGAAGAT...CACAGCATCTCTGAGGAGGAAGATAGCAACCAGAGTTGGACCTGCCATTTCCCC
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000071564.14
CDS-3UTR GCA 90 bp GCTCTCTGTAAGGAACGGGGAAATGGCAGGTCCAACTCTGGTTGCTATCTTCCTAGGCAAGCAAAGGTTTaGTCAGCTGCCAGAGTTTCA +
Preference number: 4 (lower is better)
Translates to: ALCKERGNGRSNSGCYLPRQAKV*SAARVS
Trigger: TGAAACTCTGGCAGCTGAGCAAACCTTTGCTTGCCT...AGGAAGATAGCAACCAGAGTTGGACCTGCCATTTCCCCGTTCCTTACAGAGAGC
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000071564.14
CDS-3UTR CCA 90 bp GCAGGTCCAACTCTGGTTGCTATCTTCCTCCTCAGAGATGCTGTGATTGAACTCTCTCAGCACTTCACTTaGCAGCCTGCAAATGTGGCT +
Preference number: 4 (lower is better)
Translates to: AGPTLVAIFLLRDAVIELSQHFT*QPANVA
Trigger: AGCCACATTTGCAGGCTGCCAAGTGAAGTGCTGAGA...GAGTTCAATCACAGCATCTCTGAGGAGGAAGATAGCAACCAGAGTTGGACCTGC
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000071564.14
CDS-3UTR CCA 90 bp TCAAAAGAACTTCTTCCAGTTCCCTGGCCTGAGGCATTTGGAGGACAGGCAAGTGTAGAGGTCCTCCACTaGCAGGAAAGCAAAGATGTG +
Preference number: 4 (lower is better)
Translates to: SKELLPVPWPEAFGGQASVEVLH*QESKDV
Trigger: CACATCTTTGCTTTCCTGCCAGTGGAGGACCTCTAC...ACTTGCCTGTCCTCCAAATGCCTCAGGCCAGGGAACTGGAAGAAGTTCTTTTGA
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000071564.14
CDS-3UTR CCA 90 bp CTCAGAGATGCTGTGATTGAACTCAGAGTCTCCTGTGAGCAGAAATGCAGCCCACAGAAGAGCAGATGCTaGATGTCGTTCACACAGCTG +
Preference number: 4 (lower is better)
Translates to: LRDAVIELRVSCEQKCSPQKSRC*MSFTQL
Trigger: CAGCTGTGTGAACGACATCCAGCATCTGCTCTTCTG...TGGGCTGCATTTCTGCTCACAGGAGACTCTGAGTTCAATCACAGCATCTCTGAG
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000071564.14
CDS-3UTR CCA 90 bp CCAGTTCCCTGGCCTGAGGCATTTGGAGGACAGGCAAGTGGGAACTGGCTCTCTTGTTCATGTGTTAGCTaGATAGATGTTTTCTTGCCT +
Preference number: 4 (lower is better)
Translates to: PVPWPEAFGGQASGNWLSCSCVS*IDVFLP
Trigger: AGGCAAGAAAACATCTATCCAGCTAACACATGAACA...AGAGAGCCAGTTCCCACTTGCCTGTCCTCCAAATGCCTCAGGCCAGGGAACTGG
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000071564.14
CDS-3UTR GCA 90 bp ACAGGCAAGTGGGAACTGGCTCTCTGTAAGGAACGGGGAAATGGCAGGTCCAACACTTTGCTGACAGCCTaGTCTTCATTGATCAAGTAT +
Preference number: 4 (lower is better)
Translates to: TGKWELALCKERGNGRSNTLLTA*SSLIKY
Trigger: ATACTTGATCAATGAAGAGCAGGCTGTCAGCAAAGT...GTTGGACCTGCCATTTCCCCGTTCCTTACAGAGAGCCAGTTCCCACTTGCCTGT
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000071564.14
CDS-3UTR CCA 90 bp GCAGGTCCAACTCTGGTTGCTATCTTCCTCCTCAGAGATGCTGTGATTGAACTCTCCTTTTCTATGCCATaGCTCGAGAGAATGCCATCC +
Preference number: 4 (lower is better)
Translates to: AGPTLVAIFLLRDAVIELSFSMP*LERMPS
Trigger: GGATGGCATTCTCTCGAGCCATGGCATAGAAAAGGA...GAGTTCAATCACAGCATCTCTGAGGAGGAAGATAGCAACCAGAGTTGGACCTGC
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000071564.14
CDS-3UTR TCA 90 bp ACAGGCAAGTGGGAACTGGCTCTCTGTAAGGAACGGGGAAATGGCAGGTCCAACTTGATCAAGTATCGATaGTATAGCTTCTTCCAAGGA +
Preference number: 4 (lower is better)
Translates to: TGKWELALCKERGNGRSNLIKYR*YSFFQG
Trigger: TCCTTGGAAGAAGCTATATCATCGATACTTGATCAA...GTTGGACCTGCCATTTCCCCGTTCCTTACAGAGAGCCAGTTCCCACTTGCCTGT
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000071564.14
CDS-3UTR TCA 90 bp TCAAAAGAACTTCTTCCAGTTCCCTGGCCTGAGGCATTTGGAGGACAGGCAAGTCACCAAATGGGCACATaGTCGATAGTTAGCTCTTCA +
Preference number: 4 (lower is better)
Translates to: SKELLPVPWPEAFGGQASHQMGT*SIVSSS
Trigger: TGAAGAGCTAACTATCGATCATGTGCCCATTTGGTG...ACTTGCCTGTCCTCCAAATGCCTCAGGCCAGGGAACTGGAAGAAGTTCTTTTGA
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000071564.14
CDS-3UTR GCA 90 bp GCTCTCTGTAAGGAACGGGGAAATGGCAGGTCCAACTCTGGTTGCTATCTTCCTGTTACTTGTCAACTCTaGTTGCAAGAAATACTCCCC +
Preference number: 4 (lower is better)
Translates to: ALCKERGNGRSNSGCYLPVTCQL*LQEILP
Trigger: GGGGAGTATTTCTTGCAAGCAGAGTTGACAAGTAAC...AGGAAGATAGCAACCAGAGTTGGACCTGCCATTTCCCCGTTCCTTACAGAGAGC
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000071564.14
CDS-3UTR CCA 90 bp AGTGGGAACTGGCTCTCTGTAAGGAACGGGGAAATGGCAGGTCCAACTCTGGTTCAACAGAATTGCTTTTaGCCATGTCATTGGTACAGT +
Preference number: 4 (lower is better)
Translates to: SGNWLSVRNGEMAGPTLVQQNCF*PCHWYS
Trigger: ACTGTACCAATGACATGGCCAAAAGCAATTCTGTTG...AACCAGAGTTGGACCTGCCATTTCCCCGTTCCTTACAGAGAGCCAGTTCCCACT
48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000071564.14
CDS-3UTR GCA 90 bp TCAAAAGAACTTCTTCCAGTTCCCTGGCCTGAGGCATTTGGAGGACAGGCAAGTCTGAAGCCTTCTTTATaGACCCATCTTCTGATGAAC +
Preference number: 4 (lower is better)
Translates to: SKELLPVPWPEAFGGQASLKPSL*THLLMN
Trigger: GTTCATCAGAAGATGGGTGCATAAAGAAGGCTTCAG...ACTTGCCTGTCCTCCAAATGCCTCAGGCCAGGGAACTGGAAGAAGTTCTTTTGA
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000071564.14
CDS-3UTR GCA 90 bp AGTGGGAACTGGCTCTCTGTAAGGAACGGGGAAATGGCAGGTCCAACTCTGGTTAAATCATCCAAAACGTaGACAGTGTCAAACTCTAAC +
Preference number: 4 (lower is better)
Translates to: SGNWLSVRNGEMAGPTLVKSSKT*TVSNSN
Trigger: GTTAGAGTTTGACACTGTGCACGTTTTGGATGATTT...AACCAGAGTTGGACCTGCCATTTCCCCGTTCCTTACAGAGAGCCAGTTCCCACT
47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000071564.14
CDS-3UTR TCA 90 bp GCAGGTCCAACTCTGGTTGCTATCTTCCTCCTCAGAGATGCTGTGATTGAACTCCAGCCTGCTCTTCATTaGTCAAGTATCGATGATATA +
Preference number: 4 (lower is better)
Translates to: AGPTLVAIFLLRDAVIELQPALH*SSIDDI
Trigger: TATATCATCGATACTTGATCAATGAAGAGCAGGCTG...GAGTTCAATCACAGCATCTCTGAGGAGGAAGATAGCAACCAGAGTTGGACCTGC
46% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000071564.14
CDS-3UTR CCA 90 bp CTCAGAGATGCTGTGATTGAACTCAGAGTCTCCTGTGAGCAGAAATGCAGCCCAATAATTTTTACCACCTaGAGAGGCTCCATCTTATGG +
Preference number: 4 (lower is better)
Translates to: LRDAVIELRVSCEQKCSPIIFTT*RGSILW
Trigger: CCATAAGATGGAGCCTCTCCAGGTGGTAAAAATTAT...TGGGCTGCATTTCTGCTCACAGGAGACTCTGAGTTCAATCACAGCATCTCTGAG
46% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000071564.14
CDS TCA 90 bp GTAACGCCATCCCACTGGCCGCTCTCTGTGGCTTCCTCAAAGCAGTaGGCCCGCTTCCTGGCAGGCTGTGCAGATCCTGATGAGCCCAGC +
Preference number: 5 (lower is better)
Translates to: VTPSHWPLSVASSKQ*ARFLAGCADPDEPS
Trigger: GCTGGGCTCATCAGGATCTGCACAGCCTGCCAGGAAGCGGGCTCACTGCTTTGAGGAAGCCACAGAGAGCGGCCAGTGGGATGGCGTTAC
62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000071564.14
CDS GCA 90 bp CTGGGCAGCACTATGTCTTCCACAGTGCGTTCCATGGCACGCACCTaGTCTGGGGAGGCAGTCAGGAATGCCAAAGGCCCGATGCGCTGC +
Preference number: 5 (lower is better)
Translates to: LGSTMSSTVRSMART*SGEAVRNAKGPMRC
Trigger: GCAGCGCATCGGGCCTTTGGCATTCCTGACTGCCTCCCCAGAGCAGGTGCGTGCCATGGAACGCACTGTGGAAGACATAGTGCTGCCCAG
62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000071564.14
CDS GCA 90 bp GGAAGAGCAGGGCCTCCTGCCTGGGCAGCACTATGTCTTCCACAGTaGGTTCCATGGCACGCACCTGCTCTGGGGAGGCAGTCAGGAATG +
Preference number: 5 (lower is better)
Translates to: GRAGPPAWAALCLPQ*VPWHAPALGRQSGM
Trigger: CATTCCTGACTGCCTCCCCAGAGCAGGTGCGTGCCATGGAACGCACTGTGGAAGACATAGTGCTGCCCAGGCAGGAGGCCCTGCTCTTCC
62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000071564.14
CDS CCA 90 bp ATCAGGACCAATGTCCTCAATGTCTCGGCCAGCTTCCCCCGGCACTaGGGAGCACTGGGACAAACTGTCCTCTGCCCCTTGCCTGGCCTC +
Preference number: 5 (lower is better)
Translates to: IRTNVLNVSASFPRH*GALGQTVLCPLPGL
Trigger: GAGGCCAGGCAAGGGGCAGAGGACAGTTTGTCCCAGTGCTCCCCAGTGCCGGGGGAAGCTGGCCGAGACATTGAGGACATTGGTCCTGAT
62% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000071564.14
CDS-3UTR CAA 90 bp CCCTGGCCTGAGGCATTTGGAGGACAGGCAAGTGGGAACTGGCTCTCTGTAAGGTCCACAGGGATGGTGTaGTTGCACTGCCCCACACAG +
Preference number: 5 (lower is better)
Translates to: PWPEAFGGQASGNWLSVRSTGMV*LHCPTQ
Trigger: CTGTGTGGGGCAGTGCAACAACACCATCCCTGTGGA...CCTTACAGAGAGCCAGTTCCCACTTGCCTGTCCTCCAAATGCCTCAGGCCAGGG
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000071564.14
CDS TCA 90 bp GGTAGTTGTTGCCGCATGCACGCCTCAGCCTCCAAAAGTAGAGGATaGTCCCTCAGGCTCCACAGCACCCTCTCAGGGTCAACACTTGGG +
Preference number: 5 (lower is better)
Translates to: GSCCRMHASASKSRG*SLRLHSTLSGSTLG
Trigger: CCCAAGTGTTGACCCTGAGAGGGTGCTGTGGAGCCTGAGGGATCATCCTCTACTTTTGGAGGCTGAGGCGTGCATGCGGCAACAACTACC
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000071564.14
CDS CCA 90 bp CCTTGCCTGGCCTCCCTAAGCCTTGAACACGATGGGAACAAACGATaGCGCGGTGTCTTCTTAGTAACGCCATCCCACTGGCCGCTCTCT +
Preference number: 5 (lower is better)
Translates to: PCLASLSLEHDGNKR*RGVFLVTPSHWPLS
Trigger: AGAGAGCGGCCAGTGGGATGGCGTTACTAAGAAGACACCGCGCCATCGTTTGTTCCCATCGTGTTCAAGGCTTAGGGAGGCCAGGCAAGG
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000071564.14
CDS-3UTR CAA 90 bp CCAGTTCCCTGGCCTGAGGCATTTGGAGGACAGGCAAGTGGGAACTGGCTCTCTATGGAATGGAAGGTCTaGCAGATGACGTTGCTGGGG +
Preference number: 5 (lower is better)
Translates to: PVPWPEAFGGQASGNWLSMEWKV*QMTLLG
Trigger: CCCCAGCAACGTCATCTGCAAGACCTTCCATTCCAT...AGAGAGCCAGTTCCCACTTGCCTGTCCTCCAAATGCCTCAGGCCAGGGAACTGG
57% GC, longest homopolymer 4 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000071564.14
CDS TCA 90 bp CTGGGACAAACTGTCCTCTGCCCCTTGCCTGGCCTCCCTAAGCCTTaGACACGATGGGAACAAACGATGGCGCGGTGTCTTCTTAGTAAC +
Preference number: 5 (lower is better)
Translates to: LGQTVLCPLPGLPKP*TRWEQTMARCLLSN
Trigger: GTTACTAAGAAGACACCGCGCCATCGTTTGTTCCCATCGTGTTCAAGGCTTAGGGAGGCCAGGCAAGGGGCAGAGGACAGTTTGTCCCAG
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000071564.14
CDS TCA 90 bp GGAGGCAGTCAGGAATGCCAAAGGCCCGATGCGCTGCTCTGCACATaGGTGGCAGAGGTAGCCACCCTTGTTTTCCTTCCTGTTGCTATA +
Preference number: 5 (lower is better)
Translates to: GGSQECQRPDALLCT*VAEVATLVFLPVAI
Trigger: TATAGCAACAGGAAGGAAAACAAGGGTGGCTACCTCTGCCACTCATGTGCAGAGCAGCGCATCGGGCCTTTGGCATTCCTGACTGCCTCC
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000071564.14
CDS-3UTR CAA 90 bp ACAGGCAAGTGGGAACTGGCTCTCTGTAAGGAACGGGGAAATGGCAGGTCCAACGTCTCAGCACTTCACTaGGCAGCCTGCAAATGTGGC +
Preference number: 5 (lower is better)
Translates to: TGKWELALCKERGNGRSNVSALH*AACKCG
Trigger: GCCACATTTGCAGGCTGCCAAGTGAAGTGCTGAGAC...GTTGGACCTGCCATTTCCCCGTTCCTTACAGAGAGCCAGTTCCCACTTGCCTGT
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000071564.14
CDS-3UTR CAA 90 bp CCCTGGCCTGAGGCATTTGGAGGACAGGCAAGTGGGAACTGGCTCTCTGTAAGGATGAACAGCGGGTCATaGATTATTTCCCTCCACAGG +
Preference number: 5 (lower is better)
Translates to: PWPEAFGGQASGNWLSVRMNSGS*IISLHR
Trigger: CCTGTGGAGGGAAATAATCAATGACCCGCTGTTCAT...CCTTACAGAGAGCCAGTTCCCACTTGCCTGTCCTCCAAATGCCTCAGGCCAGGG
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000071564.14
CDS-3UTR CAA 90 bp GCAGGTCCAACTCTGGTTGCTATCTTCCTCCTCAGAGATGCTGTGATTGAACTCCCCAGCTTCCGCATGTaGTCCCAGAGTCGGCTTGCT +
Preference number: 5 (lower is better)
Translates to: AGPTLVAIFLLRDAVIELPSFRM*SQSRLA
Trigger: AGCAAGCCGACTCTGGGACAACATGCGGAAGCTGGG...GAGTTCAATCACAGCATCTCTGAGGAGGAAGATAGCAACCAGAGTTGGACCTGC
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000071564.14
CDS-3UTR CAA 90 bp AAGTGGGAACTGGCTCTCTGTAAGGAACGGGGAAATGGCAGGTCCAACTCTGGTTGGTATGCCTCTTCTTaGCATTCCCCCAGCTTCCGC +
Preference number: 5 (lower is better)
Translates to: KWELALCKERGNGRSNSGWYASS*HSPSFR
Trigger: GCGGAAGCTGGGGGAATGCAAAGAAGAGGCATACCA...ACCAGAGTTGGACCTGCCATTTCCCCGTTCCTTACAGAGAGCCAGTTCCCACTT
54% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000071564.14
CDS-3UTR CAA 90 bp GGGGAAATGGCAGGTCCAACTCTGGTTGCTATCTTCCTCCTCAGAGATGCTGTGTTCGCTTCCAGTTCCTaGTCCTCGGCAGCAGTCACA +
Preference number: 5 (lower is better)
Translates to: GEMAGPTLVAIFLLRDAVFASSS*SSAAVT
Trigger: TGTGACTGCTGCCGAGGACAAGGAACTGGAAGCGAA...CACAGCATCTCTGAGGAGGAAGATAGCAACCAGAGTTGGACCTGCCATTTCCCC
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000071564.14
CDS-3UTR CAA 90 bp ACAGGCAAGTGGGAACTGGCTCTCTGTAAGGAACGGGGAAATGGCAGGTCCAACTCAAACTCTAACCCTTaGGCTTTGTGCACGGTGCCC +
Preference number: 5 (lower is better)
Translates to: TGKWELALCKERGNGRSNSNSNP*ALCTVP
Trigger: GGGCACCGTGCACAAAGCCAAAGGGTTAGAGTTTGA...GTTGGACCTGCCATTTCCCCGTTCCTTACAGAGAGCCAGTTCCCACTTGCCTGT
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000071564.14
CDS TCA 90 bp GCTGGGCACTTCCTGACAAGGCAACATTCCAAGAAGCCCATAGTATaGGTCAGGCAAGGGATCAGGACCAATGTCCTCAATGTCTCGGCC +
Preference number: 5 (lower is better)
Translates to: AGHFLTRQHSKKPIV*VRQGIRTNVLNVSA
Trigger: GGCCGAGACATTGAGGACATTGGTCCTGATCCCTTGCCTGACTCATACTATGGGCTTCTTGGAATGTTGCCTTGTCAGGAAGTGCCCAGC
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000071564.14
CDS GCA 90 bp AGCCCAGCCTCGCTTCTCCATTATCCACCTGAGGCAGAGTACAACTaGTCTCTGCAGTTAAAATCATGTCACCCTCAGCGTCCTGACAGC +
Preference number: 5 (lower is better)
Translates to: SPASLLHYPPEAEYN*SLQLKSCHPQRPDS
Trigger: GCTGTCAGGACGCTGAGGGTGACATGATTTTAACTGCAGAGAGCAGTTGTACTCTGCCTCAGGTGGATAATGGAGAAGCGAGGCTGGGCT
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000071564.14
CDS-3UTR CAA 90 bp GGGGAAATGGCAGGTCCAACTCTGGTTGCTATCTTCCTCCTCAGAGATGCTGTGCTTTTGGCCATGTCATaGGTACAGTGCTGGTGGCCA +
Preference number: 5 (lower is better)
Translates to: GEMAGPTLVAIFLLRDAVLLAMS*VQCWWP
Trigger: TGGCCACCAGCACTGTACCAATGACATGGCCAAAAG...CACAGCATCTCTGAGGAGGAAGATAGCAACCAGAGTTGGACCTGCCATTTCCCC
53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000071564.14
CDS-3UTR CAA 90 bp GGCAAGTGGGAACTGGCTCTCTGTAAGGAACGGGGAAATGGCAGGTCCAACTCTTCAAACACATTGGCATaGGTCCTGGACAGCAGAGCT +
Preference number: 5 (lower is better)
Translates to: GKWELALCKERGNGRSNSSNTLA*VLDSRA
Trigger: AGCTCTGCTGTCCAGGACCAATGCCAATGTGTTTGA...AGAGTTGGACCTGCCATTTCCCCGTTCCTTACAGAGAGCCAGTTCCCACTTGCC
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000071564.14
CDS-3UTR CAA 90 bp TCAAAAGAACTTCTTCCAGTTCCCTGGCCTGAGGCATTTGGAGGACAGGCAAGTACAGGGATGGTGTTGTaGCACTGCCCCACACAGCAG +
Preference number: 5 (lower is better)
Translates to: SKELLPVPWPEAFGGQASTGMVL*HCPTQQ
Trigger: CTGCTGTGTGGGGCAGTGCAACAACACCATCCCTGT...ACTTGCCTGTCCTCCAAATGCCTCAGGCCAGGGAACTGGAAGAAGTTCTTTTGA
53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000071564.14
CDS CCA 90 bp CAGGGGATTCTCCTTCTGTTACCCGGACAGCCTCGTCAAACACATTaGCATTGGTCCTGGACAGCAGAGCTACTTGTCCCTTTATGTCAC +
Preference number: 5 (lower is better)
Translates to: QGILLLLPGQPRQTH*HWSWTAELLVPLCH
Trigger: GTGACATAAAGGGACAAGTAGCTCTGCTGTCCAGGACCAATGCCAATGTGTTTGACGAGGCTGTCCGGGTAACAGAAGGAGAATCCCCTG
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000071564.14
ENSMUST00000131893.2
CDS-3UTR CAA 90 bp GGGGAAATGGCAGGTCCAACTCTGGTTGCTATCTTCCTCCTCAGAGATGCTGTGGCAGTCACATACCTCTaGAAGCCACTGAAGCCTTCT +
Preference number: 5 (lower is better)
Translates to: GEMAGPTLVAIFLLRDAVAVTYL*KPLKPS
Trigger: AGAAGGCTTCAGTGGCTTCAAGAGGTATGTGACTGC...CACAGCATCTCTGAGGAGGAAGATAGCAACCAGAGTTGGACCTGCCATTTCCCC
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000071564.14
CDS-3UTR CAA 90 bp ACAGGCAAGTGGGAACTGGCTCTCTGTAAGGAACGGGGAAATGGCAGGTCCAACATGTTCTCCAGGGATTaGGTCATTATGAGCCGCTTC +
Preference number: 5 (lower is better)
Translates to: TGKWELALCKERGNGRSNMFSRD*VIMSRF
Trigger: GAAGCGGCTCATAATGACCAAATCCCTGGAGAACAT...GTTGGACCTGCCATTTCCCCGTTCCTTACAGAGAGCCAGTTCCCACTTGCCTGT
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000071564.14
CDS TCA 90 bp TGTGCAGATCCTGATGAGCCCAGCCTCGCTTCTCCATTATCCACCTaGGGCAGAGTACAACTGCTCTCTGCAGTTAAAATCATGTCACCC +
Preference number: 5 (lower is better)
Translates to: CADPDEPSLASPLST*GRVQLLSAVKIMSP
Trigger: GGGTGACATGATTTTAACTGCAGAGAGCAGTTGTACTCTGCCTCAGGTGGATAATGGAGAAGCGAGGCTGGGCTCATCAGGATCTGCACA
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000071564.14
CDS TCA 90 bp GGCTTGCTTCAAGGACACCATTCAGTTTCTCACTCTGCTCCACCATaGCTCTCTGCCCGTGGCTATTCTTGCACCAAATGGGCACATGAT +
Preference number: 5 (lower is better)
Translates to: GLLQGHHSVSHSAPP*LSARGYSCTKWAHD
Trigger: ATCATGTGCCCATTTGGTGCAAGAATAGCCACGGGCAGAGAGTCATGGTGGAGCAGAGTGAGAAACTGAATGGTGTCCTTGAAGCAAGCC
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000071564.14
ENSMUST00000131893.2
CDS GCA 90 bp TGGAAGGTCTTGCAGATGACGTTGCTGGGGAAGACAAGCTCTGCCTaGTTTGCGATGCTCTTGTTGAACGTGACATACAGAAACCTGCTC +
Preference number: 5 (lower is better)
Translates to: WKVLQMTLLGKTSSA*FAMLLLNVTYRNLL
Trigger: GAGCAGGTTTCTGTATGTCACGTTCAACAAGAGCATCGCAAAGCAGGCAGAGCTTGTCTTCCCCAGCAACGTCATCTGCAAGACCTTCCA
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000071564.14
CDS-3UTR CAA 90 bp GGGGAAATGGCAGGTCCAACTCTGGTTGCTATCTTCCTCCTCAGAGATGCTGTGTCCTGGCCAACAGAATaGCTTTTGGCCATGTCATTG +
Preference number: 5 (lower is better)
Translates to: GEMAGPTLVAIFLLRDAVSWPTE*LLAMSL
Trigger: CAATGACATGGCCAAAAGCAATTCTGTTGGCCAGGA...CACAGCATCTCTGAGGAGGAAGATAGCAACCAGAGTTGGACCTGCCATTTCCCC
51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000071564.14
CDS-3UTR CAA 90 bp GTAAGGAACGGGGAAATGGCAGGTCCAACTCTGGTTGCTATCTTCCTCCTCAGAAGAATGCCATCCACTTaGCTGACAGCCTGCTCTTCA +
Preference number: 5 (lower is better)
Translates to: VRNGEMAGPTLVAIFLLRRMPST*LTACSS
Trigger: TGAAGAGCAGGCTGTCAGCAAAGTGGATGGCATTCT...TCTGAGGAGGAAGATAGCAACCAGAGTTGGACCTGCCATTTCCCCGTTCCTTAC
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000071564.14
CDS-3UTR CAA 90 bp GCAGGTCCAACTCTGGTTGCTATCTTCCTCCTCAGAGATGCTGTGATTGAACTCGTCTTGCAGATGACGTaGCTGGGGAAGACAAGCTCT +
Preference number: 5 (lower is better)
Translates to: AGPTLVAIFLLRDAVIELVLQMT*LGKTSS
Trigger: AGAGCTTGTCTTCCCCAGCAACGTCATCTGCAAGAC...GAGTTCAATCACAGCATCTCTGAGGAGGAAGATAGCAACCAGAGTTGGACCTGC
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000071564.14
CDS-3UTR CAA 90 bp GTAAGGAACGGGGAAATGGCAGGTCCAACTCTGGTTGCTATCTTCCTCCTCAGATCTAACCCTTTGGCTTaGTGCACGGTGCCCAAAATG +
Preference number: 5 (lower is better)
Translates to: VRNGEMAGPTLVAIFLLRSNPLA*CTVPKM
Trigger: CATTTTGGGCACCGTGCACAAAGCCAAAGGGTTAGA...TCTGAGGAGGAAGATAGCAACCAGAGTTGGACCTGCCATTTCCCCGTTCCTTAC
51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000071564.14
CDS TCA 90 bp GACAGCAGAGCTACTTGTCCCTTTATGTCACCTCTTATGCCACTCTaGTGGTTCCCTCCAACCAACGTCTTCTTCCTGACTCTCTTGCAG +
Preference number: 5 (lower is better)
Translates to: DSRATCPFMSPLMPL*WFPPTNVFFLTLLQ
Trigger: CTGCAAGAGAGTCAGGAAGAAGACGTTGGTTGGAGGGAACCATCAGAGTGGCATAAGAGGTGACATAAAGGGACAAGTAGCTCTGCTGTC
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000071564.14
ENSMUST00000131893.2
CDS GCA 90 bp GGAATGGAAGGTCTTGCAGATGACGTTGCTGGGGAAGACAAGCTCTaGCTGCTTTGCGATGCTCTTGTTGAACGTGACATACAGAAACCT +
Preference number: 5 (lower is better)
Translates to: GMEGLADDVAGEDKL*LLCDALVERDIQKP
Trigger: AGGTTTCTGTATGTCACGTTCAACAAGAGCATCGCAAAGCAGGCAGAGCTTGTCTTCCCCAGCAACGTCATCTGCAAGACCTTCCATTCC
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000071564.14
CDS CCA 90 bp CAAAGATGTGTCTCAGCACTTCACTTGGCAGCCTGCAAATGTGGCTaGGCACTTCCTGACAAGGCAACATTCCAAGAAGCCCATAGTATG +
Preference number: 5 (lower is better)
Translates to: QRCVSALHLAACKCG*ALPDKATFQEAHSM
Trigger: CATACTATGGGCTTCTTGGAATGTTGCCTTGTCAGGAAGTGCCCAGCCACATTTGCAGGCTGCCAAGTGAAGTGCTGAGACACATCTTTG
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000071564.14
CDS CCA 90 bp CGTATGAGGTTCAGCACACATAGGTCCGAATCCTTTTCTATGCCATaGCTCGAGAGAATGCCATCCACTTTGCTGACAGCCTGCTCTTCA +
Preference number: 5 (lower is better)
Translates to: RMRFSTHRSESFSMP*LERMPSTLLTACSS
Trigger: TGAAGAGCAGGCTGTCAGCAAAGTGGATGGCATTCTCTCGAGCCATGGCATAGAAAAGGATTCGGACCTATGTGTGCTGAACCTCATACG
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000071564.14
CDS-3UTR CAA 90 bp GGGGAAATGGCAGGTCCAACTCTGGTTGCTATCTTCCTCCTCAGAGATGCTGTGTGCTTTGCGATGCTCTaGTTGAACGTGACATACAGA +
Preference number: 5 (lower is better)
Translates to: GEMAGPTLVAIFLLRDAVCFAML*LNVTYR
Trigger: TCTGTATGTCACGTTCAACAAGAGCATCGCAAAGCA...CACAGCATCTCTGAGGAGGAAGATAGCAACCAGAGTTGGACCTGCCATTTCCCC
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000071564.14
CDS-3UTR CAA 90 bp GGCAAGTGGGAACTGGCTCTCTGTAAGGAACGGGGAAATGGCAGGTCCAACTCTTTCTTCCTGACTCTCTaGCAGACATCCAAAATGGTA +
Preference number: 5 (lower is better)
Translates to: GKWELALCKERGNGRSNSFFLTL*QTSKMV
Trigger: TACCATTTTGGATGTCTGCAAGAGAGTCAGGAAGAA...AGAGTTGGACCTGCCATTTCCCCGTTCCTTACAGAGAGCCAGTTCCCACTTGCC
50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000071564.14
CDS-3UTR CAA 90 bp GCAGGTCCAACTCTGGTTGCTATCTTCCTCCTCAGAGATGCTGTGATTGAACTCGGACAGCAGAGCTACTaGTCCCTTTATGTCACCTCT +
Preference number: 5 (lower is better)
Translates to: AGPTLVAIFLLRDAVIELGQQSY*SLYVTS
Trigger: AGAGGTGACATAAAGGGACAAGTAGCTCTGCTGTCC...GAGTTCAATCACAGCATCTCTGAGGAGGAAGATAGCAACCAGAGTTGGACCTGC
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000071564.14
CDS-3UTR CAA 90 bp GGGGAAATGGCAGGTCCAACTCTGGTTGCTATCTTCCTCCTCAGAGATGCTGTGCAATCAAATGTATCCTaGCAGGGGATTCTCCTTCTG +
Preference number: 5 (lower is better)
Translates to: GEMAGPTLVAIFLLRDAVQSNVS*QGILLL
Trigger: CAGAAGGAGAATCCCCTGCAAGGATACATTTGATTG...CACAGCATCTCTGAGGAGGAAGATAGCAACCAGAGTTGGACCTGCCATTTCCCC
50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000071564.14
CDS TCA 90 bp GTACAACTGCTCTCTGCAGTTAAAATCATGTCACCCTCAGCGTCCTaGCAGCTGTCCTGGCCAACAGAATTGCTTTTGGCCATGTCATTG +
Preference number: 5 (lower is better)
Translates to: VQLLSAVKIMSPSAS*QLSWPTELLLAMSL
Trigger: CAATGACATGGCCAAAAGCAATTCTGTTGGCCAGGACAGCTGTCAGGACGCTGAGGGTGACATGATTTTAACTGCAGAGAGCAGTTGTAC
49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000071564.14
CDS TCA 90 bp TGCTTTGCGATGCTCTTGTTGAACGTGACATACAGAAACCTGCTCTaGGACCACTTCTCAGCATACTTGACCAGGGTAGAAGTCTTCCCG +
Preference number: 5 (lower is better)
Translates to: CFAMLLLNVTYRNLL*DHFSAYLTRVEVFP
Trigger: CGGGAAGACTTCTACCCTGGTCAAGTATGCTGAGAAGTGGTCTCAGAGCAGGTTTCTGTATGTCACGTTCAACAAGAGCATCGCAAAGCA
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000071564.14
CDS GCA 90 bp AGATTATGCCTGGCACAAGGCACTTTCACGAAATCATCCAAAACGTaGACAGTGTCAAACTCTAACCCTTTGGCTTTGTGCACGGTGCCC +
Preference number: 5 (lower is better)
Translates to: RLCLAQGTFTKSSKT*TVSNSNPLALCTVP
Trigger: GGGCACCGTGCACAAAGCCAAAGGGTTAGAGTTTGACACTGTGCACGTTTTGGATGATTTCGTGAAAGTGCCTTGTGCCAGGCATAATCT
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000071564.14
CDS GCA 90 bp TTCTTCATGGTAAGGATGGTGTCCACAGGGATGGTGTTGTTGCACTaGCCCACACAGCAGTGGACCACTCCTGTTTTCAAAACGTTACTT +
Preference number: 5 (lower is better)
Translates to: FFMVRMVSTGMVLLH*PTQQWTTPVFKTLL
Trigger: AAGTAACGTTTTGAAAACAGGAGTGGTCCACTGCTGTGTGGGGCAGTGCAACAACACCATCCCTGTGGACACCATCCTTACCATGAAGAA
49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000071564.14
CDS-3UTR CAA 90 bp GTAAGGAACGGGGAAATGGCAGGTCCAACTCTGGTTGCTATCTTCCTCCTCAGACCAACAGAATTGCTTTaGGCCATGTCATTGGTACAG +
Preference number: 5 (lower is better)
Translates to: VRNGEMAGPTLVAIFLLRPTELL*AMSLVQ
Trigger: CTGTACCAATGACATGGCCAAAAGCAATTCTGTTGG...TCTGAGGAGGAAGATAGCAACCAGAGTTGGACCTGCCATTTCCCCGTTCCTTAC
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000071564.14
CDS-3UTR CAA 90 bp AGTGGGAACTGGCTCTCTGTAAGGAACGGGGAAATGGCAGGTCCAACTCTGGTTTTTGCGATGCTCTTGTaGAACGTGACATACAGAAAC +
Preference number: 5 (lower is better)
Translates to: SGNWLSVRNGEMAGPTLVFAMLL*NVTYRN
Trigger: GTTTCTGTATGTCACGTTCAACAAGAGCATCGCAAA...AACCAGAGTTGGACCTGCCATTTCCCCGTTCCTTACAGAGAGCCAGTTCCCACT
49% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000071564.14
CDS-3UTR CAA 90 bp GCAGGTCCAACTCTGGTTGCTATCTTCCTCCTCAGAGATGCTGTGATTGAACTCATTATGAGCCGCTTCTaGGCACGAGTAACAGCAACA +
Preference number: 5 (lower is better)
Translates to: AGPTLVAIFLLRDAVIELIMSRF*ARVTAT
Trigger: TGTTGCTGTTACTCGTGCCAAGAAGCGGCTCATAAT...GAGTTCAATCACAGCATCTCTGAGGAGGAAGATAGCAACCAGAGTTGGACCTGC
49% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000071564.14
CDS GCA 90 bp AGAGTTTCAAATAGCCATCATGTGTCATTTGGTATGCCTCTTCTTTaGATTCCCCCAGCTTCCGCATGTTGTCCCAGAGTCGGCTTGCTT +
Preference number: 5 (lower is better)
Translates to: RVSNSHHVSFGMPLL*IPPASACCPRVGLL
Trigger: AAGCAAGCCGACTCTGGGACAACATGCGGAAGCTGGGGGAATGCAAAGAAGAGGCATACCAAATGACACATGATGGCTATTTGAAACTCT
48% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000071564.14
CDS GCA 90 bp GGGCCTCATCCACAAAGATGGCGTCAAAAGAGGCAAGCAAAGGTTTaGTCAGCTGCCAGAGTTTCAAATAGCCATCATGTGTCATTTGGT +
Preference number: 5 (lower is better)
Translates to: GPHPQRWRQKRQAKV*SAARVSNSHHVSFG
Trigger: ACCAAATGACACATGATGGCTATTTGAAACTCTGGCAGCTGAGCAAACCTTTGCTTGCCTCTTTTGACGCCATCTTTGTGGATGAGGCCC
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000071564.14
CDS-3UTR CAA 90 bp GGCAAGTGGGAACTGGCTCTCTGTAAGGAACGGGGAAATGGCAGGTCCAACTCTATAAAGGGTGTCAACTaGAAGAGATTCAACTTCTTC +
Preference number: 5 (lower is better)
Translates to: GKWELALCKERGNGRSNSIKGVN*KRFNFF
Trigger: GAAGAAGTTGAATCTCTTCAAGTTGACACCCTTTAT...AGAGTTGGACCTGCCATTTCCCCGTTCCTTACAGAGAGCCAGTTCCCACTTGCC
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000071564.14
CDS-3UTR CAA 90 bp TCAAAAGAACTTCTTCCAGTTCCCTGGCCTGAGGCATTTGGAGGACAGGCAAGTGTCTTACACACTAACTaGGCCCTTATAAATCCACCT +
Preference number: 5 (lower is better)
Translates to: SKELLPVPWPEAFGGQASVLHTN*ALINPP
Trigger: AGGTGGATTTATAAGGGCCAAGTTAGTGTGTAAGAC...ACTTGCCTGTCCTCCAAATGCCTCAGGCCAGGGAACTGGAAGAAGTTCTTTTGA
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000071564.14
CDS TCA 90 bp ACCATGACTCTCTGCCCGTGGCTATTCTTGCACCAAATGGGCACATaGTCGATAGTTAGCTCTTCATCAGCTGATGCAAAGAAGTTTTCT +
Preference number: 5 (lower is better)
Translates to: TMTLCPWLFLHQMGT*SIVSSSSADAKKFS
Trigger: AGAAAACTTCTTTGCATCAGCTGATGAAGAGCTAACTATCGATCATGTGCCCATTTGGTGCAAGAATAGCCACGGGCAGAGAGTCATGGT
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000071564.14
ENSMUST00000131893.2
CDS CCA 90 bp GTAGAAGTCTTCCCGGTGCCTGCAAATGCCATAATTTTTACCACCTaGAGAGGCTCCATCTTATGGTTCAGAATCAGCTGTTGTTCATGT +
Preference number: 5 (lower is better)
Translates to: VEVFPVPANAIIFTT*RGSILWFRISCCSC
Trigger: ACATGAACAACAGCTGATTCTGAACCATAAGATGGAGCCTCTCCAGGTGGTAAAAATTATGGCATTTGCAGGCACCGGGAAGACTTCTAC
46% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000071564.14
CDS TCA 90 bp CTGTCTTTAATGATGAGGTCTCGTTTCCTCCGTTCTTCCTCTGGCTaGAGAAGGGTCCAAATGTCAATGATTCTGTCCAATCCAAACGAT +
Preference number: 5 (lower is better)
Translates to: LSLMMRSRFLRSSSG*RRVQMSMILSNPND
Trigger: ATCGTTTGGATTGGACAGAATCATTGACATTTGGACCCTTCTTCAGCCAGAGGAAGAACGGAGGAAACGAGACCTCATCATTAAAGACAG
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000071564.14
ENSMUST00000131893.2
CDS CCA 90 bp GAACCTGTCTTTAATGATGAGGTCTCGTTTCCTCCGTTCTTCCTCTaGCTGAAGAAGGGTCCAAATGTCAATGATTCTGTCCAATCCAAA +
Preference number: 5 (lower is better)
Translates to: EPVFNDEVSFPPFFL*LKKGPNVNDSVQSK
Trigger: TTTGGATTGGACAGAATCATTGACATTTGGACCCTTCTTCAGCCAGAGGAAGAACGGAGGAAACGAGACCTCATCATTAAAGACAGGTTC
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000071564.14
ENSMUST00000131893.2
CDS CCA 90 bp TGCACGGTGCCCAAAATGTACTCTGCAAAGTCCAAATCGTCTATGTaGCATCTCTCTATCCTTTCTACCAGTTCTGGAATCCTGATATTG +
Preference number: 5 (lower is better)
Translates to: CTVPKMYSAKSKSSM*HLSILSTSSGILIL
Trigger: CAATATCAGGATTCCAGAACTGGTAGAAAGGATAGAGAGATGCCACATAGACGATTTGGACTTTGCAGAGTACATTTTGGGCACCGTGCA
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000071564.14
ENSMUST00000131893.2
CDS CCA 90 bp TCACGAAATCATCCAAAACGTGCACAGTGTCAAACTCTAACCCTTTaGCTTTGTGCACGGTGCCCAAAATGTACTCTGCAAAGTCCAAAT +
Preference number: 5 (lower is better)
Translates to: SRNHPKRAQCQTLTL*LCARCPKCTLQSPN
Trigger: ATTTGGACTTTGCAGAGTACATTTTGGGCACCGTGCACAAAGCCAAAGGGTTAGAGTTTGACACTGTGCACGTTTTGGATGATTTCGTGA
44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000071564.14
CDS-3UTR CAA 90 bp GCAGGTCCAACTCTGGTTGCTATCTTCCTCCTCAGAGATGCTGTGATTGAACTCTCTGGAATCCTGATATaGTATTTTTCAACTACCGCA +
Preference number: 5 (lower is better)
Translates to: AGPTLVAIFLLRDAVIELSGILI*YFSTTA
Trigger: TGCGGTAGTTGAAAAATACAATATCAGGATTCCAGA...GAGTTCAATCACAGCATCTCTGAGGAGGAAGATAGCAACCAGAGTTGGACCTGC
44% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000071564.14
CDS-3UTR CAA 90 bp GCAGGTCCAACTCTGGTTGCTATCTTCCTCCTCAGAGATGCTGTGATTGAACTCTTTTCAAAACGTTACTaGTCAACTCTGCTTGCAAGA +
Preference number: 5 (lower is better)
Translates to: AGPTLVAIFLLRDAVIELFSKRY*STLLAR
Trigger: TCTTGCAAGCAGAGTTGACAAGTAACGTTTTGAAAA...GAGTTCAATCACAGCATCTCTGAGGAGGAAGATAGCAACCAGAGTTGGACCTGC
44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000071564.14
CDS TCA 90 bp CGTCTATGTGGCATCTCTCTATCCTTTCTACCAGTTCTGGAATCCTaGTATTGTATTTTTCAACTACCGCAATCTTCGCTTCCAGTTCCT +
Preference number: 5 (lower is better)
Translates to: RLCGISLSFLPVLES*YCIFQLPQSSLPVP
Trigger: AGGAACTGGAAGCGAAGATTGCGGTAGTTGAAAAATACAATATCAGGATTCCAGAACTGGTAGAAAGGATAGAGAGATGCCACATAGACG
42% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000071564.14
ENSMUST00000131893.2
CDS CCA 90 bp CCTGCAAATGCCATAATTTTTACCACCTGGAGAGGCTCCATCTTATaGTTCAGAATCAGCTGTTGTTCATGTGTTAGCTGGATAGATGTT +
Preference number: 5 (lower is better)
Translates to: PANAIIFTTWRGSIL*FRISCCSCVSWIDV
Trigger: AACATCTATCCAGCTAACACATGAACAACAGCTGATTCTGAACCATAAGATGGAGCCTCTCCAGGTGGTAAAAATTATGGCATTTGCAGG
42% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000071564.14
CDS GCA 72 bp GGGCCTCCTGCCTGGGCAGCACTATGTCTTCCACAGTaGGTTCCATGGCACGCACCTGCTCTGGGGAGGCAG +
Preference number: 6 (lower is better)
Translates to: GPPAWAALCLPQ*VPWHAPALGRQ
Trigger: CTGCCTCCCCAGAGCAGGTGCGTGCCATGGAACGCACTGTGGAAGACATAGTGCTGCCCAGGCAGGAGGCCC
65% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000071564.14
CDS GCA 72 bp GATGTCGTTCACACAGCTGGAGAGGAGCACCATGGCTaGCACCAAGGCCCAGACGTTAATGCCCCCAGCAGC +
Preference number: 6 (lower is better)
Translates to: DVVHTAGEEHHG*HQGPDVNAPSS
Trigger: GCTGCTGGGGGCATTAACGTCTGGGCCTTGGTGGCAGCCATGGTGCTCCTCTCCAGCTGTGTGAACGACATC
61% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000071564.14
CDS CCA 72 bp TCTCTGTGGCTTCCTCAAAGCAGTGAGCCCGCTTCCTaGCAGGCTGTGCAGATCCTGATGAGCCCAGCCTCG +
Preference number: 6 (lower is better)
Translates to: SLWLPQSSEPAS*QAVQILMSPAS
Trigger: CGAGGCTGGGCTCATCAGGATCTGCACAGCCTGCCAGGAAGCGGGCTCACTGCTTTGAGGAAGCCACAGAGA
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000071564.14
CDS TCA 72 bp TGCCGCATGCACGCCTCAGCCTCCAAAAGTAGAGGATaGTCCCTCAGGCTCCACAGCACCCTCTCAGGGTCA +
Preference number: 6 (lower is better)
Translates to: CRMHASASKSRG*SLRLHSTLSGS
Trigger: TGACCCTGAGAGGGTGCTGTGGAGCCTGAGGGATCATCCTCTACTTTTGGAGGCTGAGGCGTGCATGCGGCA
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000071564.14
CDS GCA 72 bp ACTATGTCTTCCACAGTGCGTTCCATGGCACGCACCTaGTCTGGGGAGGCAGTCAGGAATGCCAAAGGCCCG +
Preference number: 6 (lower is better)
Translates to: TMSSTVRSMART*SGEAVRNAKGP
Trigger: CGGGCCTTTGGCATTCCTGACTGCCTCCCCAGAGCAGGTGCGTGCCATGGAACGCACTGTGGAAGACATAGT
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000071564.14
CDS CCA 72 bp GGCAGAAGAGCAGATGCTGGATGTCGTTCACACAGCTaGAGAGGAGCACCATGGCTGCCACCAAGGCCCAGA +
Preference number: 6 (lower is better)
Translates to: GRRADAGCRSHS*RGAPWLPPRPR
Trigger: TCTGGGCCTTGGTGGCAGCCATGGTGCTCCTCTCCAGCTGTGTGAACGACATCCAGCATCTGCTCTTCTGCC
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000071564.14
CDS CCA 72 bp CCTCAGGCTCCACAGCACCCTCTCAGGGTCAACACTTaGGGAGCATTTGGTGGTGGCCGTGTATCGTATGAG +
Preference number: 6 (lower is better)
Translates to: PQAPQHPLRVNT*GAFGGGRVSYE
Trigger: CTCATACGATACACGGCCACCACCAAATGCTCCCCAAGTGTTGACCCTGAGAGGGTGCTGTGGAGCCTGAGG
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000071564.14
CDS TCA 72 bp CAGGAATGCCAAAGGCCCGATGCGCTGCTCTGCACATaGGTGGCAGAGGTAGCCACCCTTGTTTTCCTTCCT +
Preference number: 6 (lower is better)
Translates to: QECQRPDALLCT*VAEVATLVFLP
Trigger: AGGAAGGAAAACAAGGGTGGCTACCTCTGCCACTCATGTGCAGAGCAGCGCATCGGGCCTTTGGCATTCCTG
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000071564.14
CDS GCA 72 bp GACGTGGGTGTGGGGAACTGTGAACAGAGCATTCACTaGACCTCGGAAGGTATAGATCTGCTGGTGGGGGTC +
Preference number: 6 (lower is better)
Translates to: DVGVGNCEQSIH*TSEGIDLLVGV
Trigger: GACCCCCACCAGCAGATCTATACCTTCCGAGGTGCAGTGAATGCTCTGTTCACAGTTCCCCACACCCACGTC
57% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000071564.14
ENSMUST00000131893.2
CDS GCA 72 bp CAGCAGCTGCATAGAGGTCAGGTAGTTGTTGCCGCATaGACGCCTCAGCCTCCAAAAGTAGAGGATGATCCC +
Preference number: 6 (lower is better)
Translates to: QQLHRGQVVVAA*TPQPPKVEDDP
Trigger: GGGATCATCCTCTACTTTTGGAGGCTGAGGCGTGCATGCGGCAACAACTACCTGACCTCTATGCAGCTGCTG
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000071564.14
CDS CAA 72 bp CACAGCACCCTCTCAGGGTCAACACTTGGGGAGCATTaGGTGGTGGCCGTGTATCGTATGAGGTTCAGCACA +
Preference number: 6 (lower is better)
Translates to: HSTLSGSTLGEH*VVAVYRMRFST
Trigger: TGTGCTGAACCTCATACGATACACGGCCACCACCAAATGCTCCCCAAGTGTTGACCCTGAGAGGGTGCTGTG
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000071564.14
CDS GCA 72 bp TTCCCCCAGCTTCCGCATGTTGTCCCAGAGTCGGCTTaGTTCAAGGACACCATTCAGTTTCTCACTCTGCTC +
Preference number: 6 (lower is better)
Translates to: FPQLPHVVPESA*FKDTIQFLTLL
Trigger: GAGCAGAGTGAGAAACTGAATGGTGTCCTTGAAGCAAGCCGACTCTGGGACAACATGCGGAAGCTGGGGGAA
54% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000071564.14
ENSMUST00000131893.2
CDS CCA 72 bp CGTCCTGACAGCTGTCCTGGCCAACAGAATTGCTTTTaGCCATGTCATTGGTACAGTGCTGGTGGCCAGCTA +
Preference number: 6 (lower is better)
Translates to: RPDSCPGQQNCF*PCHWYSAGGQL
Trigger: TAGCTGGCCACCAGCACTGTACCAATGACATGGCCAAAAGCAATTCTGTTGGCCAGGACAGCTGTCAGGACG
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000071564.14
CDS CCA 72 bp CCCGGACAGCCTCGTCAAACACATTGGCATTGGTCCTaGACAGCAGAGCTACTTGTCCCTTTATGTCACCTC +
Preference number: 6 (lower is better)
Translates to: PGQPRQTHWHWS*TAELLVPLCHL
Trigger: GAGGTGACATAAAGGGACAAGTAGCTCTGCTGTCCAGGACCAATGCCAATGTGTTTGACGAGGCTGTCCGGG
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000071564.14
ENSMUST00000131893.2
CDS CCA 72 bp CTCCTTCTGTTACCCGGACAGCCTCGTCAAACACATTaGCATTGGTCCTGGACAGCAGAGCTACTTGTCCCT +
Preference number: 6 (lower is better)
Translates to: LLLLPGQPRQTH*HWSWTAELLVP
Trigger: AGGGACAAGTAGCTCTGCTGTCCAGGACCAATGCCAATGTGTTTGACGAGGCTGTCCGGGTAACAGAAGGAG
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000071564.14
ENSMUST00000131893.2
CDS GCA 72 bp CGGCTTGCTTCAAGGACACCATTCAGTTTCTCACTCTaGTCCACCATGACTCTCTGCCCGTGGCTATTCTTG +
Preference number: 6 (lower is better)
Translates to: RLASRTPFSFSL*STMTLCPWLFL
Trigger: CAAGAATAGCCACGGGCAGAGAGTCATGGTGGAGCAGAGTGAGAAACTGAATGGTGTCCTTGAAGCAAGCCG
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000071564.14
ENSMUST00000131893.2
CDS GCA 72 bp GTAAGGATGGTGTCCACAGGGATGGTGTTGTTGCACTaGCCCACACAGCAGTGGACCACTCCTGTTTTCAAA +
Preference number: 6 (lower is better)
Translates to: VRMVSTGMVLLH*PTQQWTTPVFK
Trigger: TTTGAAAACAGGAGTGGTCCACTGCTGTGTGGGGCAGTGCAACAACACCATCCCTGTGGACACCATCCTTAC
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000071564.14
CDS CCA 72 bp GCACACCAGGCTGAGATTCCAGTAGAGGTCCTCCACTaGCAGGAAAGCAAAGATGTGTCTCAGCACTTCACT +
Preference number: 6 (lower is better)
Translates to: AHQAEIPVEVLH*QESKDVSQHFT
Trigger: AGTGAAGTGCTGAGACACATCTTTGCTTTCCTGCCAGTGGAGGACCTCTACTGGAATCTCAGCCTGGTGTGC
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000071564.14
CDS TCA 72 bp CTCTCTGCAGTTAAAATCATGTCACCCTCAGCGTCCTaGCAGCTGTCCTGGCCAACAGAATTGCTTTTGGCC +
Preference number: 6 (lower is better)
Translates to: LSAVKIMSPSAS*QLSWPTELLLA
Trigger: GGCCAAAAGCAATTCTGTTGGCCAGGACAGCTGTCAGGACGCTGAGGGTGACATGATTTTAACTGCAGAGAG
51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000071564.14
CDS GCA 72 bp AAGCAAAGATGTGTCTCAGCACTTCACTTGGCAGCCTaGAAATGTGGCTGGGCACTTCCTGACAAGGCAACA +
Preference number: 6 (lower is better)
Translates to: KQRCVSALHLAA*KCGWALPDKAT
Trigger: TGTTGCCTTGTCAGGAAGTGCCCAGCCACATTTGCAGGCTGCCAAGTGAAGTGCTGAGACACATCTTTGCTT
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000071564.14
CDS GCA 72 bp GGTCTTGCAGATGACGTTGCTGGGGAAGACAAGCTCTaGCTGCTTTGCGATGCTCTTGTTGAACGTGACATA +
Preference number: 6 (lower is better)
Translates to: GLADDVAGEDKL*LLCDALVERDI
Trigger: TATGTCACGTTCAACAAGAGCATCGCAAAGCAGGCAGAGCTTGTCTTCCCCAGCAACGTCATCTGCAAGACC
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000071564.14
CDS CCA 72 bp CTGTTACCCGGACAGCCTCGTCAAACACATTGGCATTaGTCCTGGACAGCAGAGCTACTTGTCCCTTTATGT +
Preference number: 6 (lower is better)
Translates to: LLPGQPRQTHWH*SWTAELLVPLC
Trigger: ACATAAAGGGACAAGTAGCTCTGCTGTCCAGGACCAATGCCAATGTGTTTGACGAGGCTGTCCGGGTAACAG
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000071564.14
ENSMUST00000131893.2
CDS CAA 72 bp TACTCCCCAGCCAGAGTCAGGATGTTCTCCAGGGATTaGGTCATTATGAGCCGCTTCTTGGCACGAGTAACA +
Preference number: 6 (lower is better)
Translates to: YSPARVRMFSRD*VIMSRFLARVT
Trigger: TGTTACTCGTGCCAAGAAGCGGCTCATAATGACCAAATCCCTGGAGAACATCCTGACTCTGGCTGGGGAGTA
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000071564.14
CDS CAA 90 bp GTCATTTGGTATGCCTCTTCTTTGCATTCCCCCAGCTTCCGCATGTaGTCCCAGAGTCGGCTTGCTTCAAGGACACCATTCAGTTTCTCA +
Preference number: 6 (lower is better)
Translates to: VIWYASSLHSPSFRM*SQSRLASRTPFSFS
Trigger: TGAGAAACTGAATGGTGTCCTTGAAGCAAGCCGACTCTGGGACAACATGCGGAAGCTGGGGGAATGCAAAGAAGAGGCATACCAAATGAC
50% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000071564.14
ENSMUST00000131893.2
CDS GCA 72 bp CTTGACCAGGGTAGAAGTCTTCCCGGTGCCTGCAAATaGCATAATTTTTACCACCTGGAGAGGCTCCATCTT +
Preference number: 6 (lower is better)
Translates to: LDQGRSLPGACK*HNFYHLERLHL
Trigger: AAGATGGAGCCTCTCCAGGTGGTAAAAATTATGGCATTTGCAGGCACCGGGAAGACTTCTACCCTGGTCAAG
50% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000071564.14
CDS GCA 72 bp TTGCAGATGACGTTGCTGGGGAAGACAAGCTCTGCCTaGTTTGCGATGCTCTTGTTGAACGTGACATACAGA +
Preference number: 6 (lower is better)
Translates to: LQMTLLGKTSSA*FAMLLLNVTYR
Trigger: TCTGTATGTCACGTTCAACAAGAGCATCGCAAAGCAGGCAGAGCTTGTCTTCCCCAGCAACGTCATCTGCAA
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000071564.14
CDS CCA 72 bp TTCAGCACACATAGGTCCGAATCCTTTTCTATGCCATaGCTCGAGAGAATGCCATCCACTTTGCTGACAGCC +
Preference number: 6 (lower is better)
Translates to: FSTHRSESFSMP*LERMPSTLLTA
Trigger: GGCTGTCAGCAAAGTGGATGGCATTCTCTCGAGCCATGGCATAGAAAAGGATTCGGACCTATGTGTGCTGAA
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000071564.14
CDS CAA 90 bp ATCTTCGCTTCCAGTTCCTTGTCCTCGGCAGCAGTCACATACCTCTaGAAGCCACTGAAGCCTTCTTTATGCACCCATCTTCTGATGAAC +
Preference number: 6 (lower is better)
Translates to: IFASSSLSSAAVTYL*KPLKPSLCTHLLMN
Trigger: GTTCATCAGAAGATGGGTGCATAAAGAAGGCTTCAGTGGCTTCAAGAGGTATGTGACTGCTGCCGAGGACAAGGAACTGGAAGCGAAGAT
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000071564.14
ENSMUST00000131893.2
CDS CAA 90 bp TGCAAGAAATACTCCCCAGCCAGAGTCAGGATGTTCTCCAGGGATTaGGTCATTATGAGCCGCTTCTTGGCACGAGTAACAGCAACATAC +
Preference number: 6 (lower is better)
Translates to: CKKYSPARVRMFSRD*VIMSRFLARVTATY
Trigger: GTATGTTGCTGTTACTCGTGCCAAGAAGCGGCTCATAATGACCAAATCCCTGGAGAACATCCTGACTCTGGCTGGGGAGTATTTCTTGCA
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000071564.14
CDS TCA 72 bp GCTACTTGTCCCTTTATGTCACCTCTTATGCCACTCTaGTGGTTCCCTCCAACCAACGTCTTCTTCCTGACT +
Preference number: 6 (lower is better)
Translates to: ATCPFMSPLMPL*WFPPTNVFFLT
Trigger: AGTCAGGAAGAAGACGTTGGTTGGAGGGAACCATCAGAGTGGCATAAGAGGTGACATAAAGGGACAAGTAGC
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000071564.14
ENSMUST00000131893.2
CDS GCA 72 bp TCGCTTCTCCATTATCCACCTGAGGCAGAGTACAACTaGTCTCTGCAGTTAAAATCATGTCACCCTCAGCGT +
Preference number: 6 (lower is better)
Translates to: SLLHYPPEAEYN*SLQLKSCHPQR
Trigger: ACGCTGAGGGTGACATGATTTTAACTGCAGAGAGCAGTTGTACTCTGCCTCAGGTGGATAATGGAGAAGCGA
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000071564.14
CDS CAA 90 bp CCTTTTCCTTCAGCAAGGACGGAGTTAACCATAAAGGGTGTCAACTaGAAGAGATTCAACTTCTTCTTCAGCTGGTACTTCCGCCCGACG +
Preference number: 6 (lower is better)
Translates to: PFPSARTELTIKGVN*KRFNFFFSWYFRPT
Trigger: CGTCGGGCGGAAGTACCAGCTGAAGAAGAAGTTGAATCTCTTCAAGTTGACACCCTTTATGGTTAACTCCGTCCTTGCTGAAGGAAAAGG
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000071564.14
CDS CAA 90 bp ACTATGTTCATGATAGCATCATGTGTCATTTGGTATGCCTCTTCTTaGCATTCCCCCAGCTTCCGCATGTTGTCCCAGAGTCGGCTTGCT +
Preference number: 6 (lower is better)
Translates to: TMFMIASCVIWYASS*HSPSFRMLSQSRLA
Trigger: AGCAAGCCGACTCTGGGACAACATGCGGAAGCTGGGGGAATGCAAAGAAGAGGCATACCAAATGACACATGATGCTATCATGAACATAGT
48% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000131893.2
CDS CAA 90 bp CTGATATTGTATTTTTCAACTACCGCAATCTTCGCTTCCAGTTCCTaGTCCTCGGCAGCAGTCACATACCTCTTGAAGCCACTGAAGCCT +
Preference number: 6 (lower is better)
Translates to: LILYFSTTAIFASSS*SSAAVTYLLKPLKP
Trigger: AGGCTTCAGTGGCTTCAAGAGGTATGTGACTGCTGCCGAGGACAAGGAACTGGAAGCGAAGATTGCGGTAGTTGAAAAATACAATATCAG
47% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000071564.14
ENSMUST00000131893.2
CDS TCA 72 bp TTCCTGACAAGGCAACATTCCAAGAAGCCCATAGTATaGGTCAGGCAAGGGATCAGGACCAATGTCCTCAAT +
Preference number: 6 (lower is better)
Translates to: FLTRQHSKKPIV*VRQGIRTNVLN
Trigger: ATTGAGGACATTGGTCCTGATCCCTTGCCTGACTCATACTATGGGCTTCTTGGAATGTTGCCTTGTCAGGAA
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000071564.14
CDS CCA 72 bp TTCCCGGTGCCTGCAAATGCCATAATTTTTACCACCTaGAGAGGCTCCATCTTATGGTTCAGAATCAGCTGT +
Preference number: 6 (lower is better)
Translates to: FPVPANAIIFTT*RGSILWFRISC
Trigger: ACAGCTGATTCTGAACCATAAGATGGAGCCTCTCCAGGTGGTAAAAATTATGGCATTTGCAGGCACCGGGAA
47% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000071564.14
CDS CCA 72 bp CATCCAAAACGTGCACAGTGTCAAACTCTAACCCTTTaGCTTTGTGCACGGTGCCCAAAATGTACTCTGCAA +
Preference number: 6 (lower is better)
Translates to: HPKRAQCQTLTL*LCARCPKCTLQ
Trigger: TTGCAGAGTACATTTTGGGCACCGTGCACAAAGCCAAAGGGTTAGAGTTTGACACTGTGCACGTTTTGGATG
47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000071564.14
CDS CAA 72 bp TATTTTTCAACTACCGCAATCTTCGCTTCCAGTTCCTaGTCCTCGGCAGCAGTCACATACCTCTTGAAGCCA +
Preference number: 6 (lower is better)
Translates to: YFSTTAIFASSS*SSAAVTYLLKP
Trigger: TGGCTTCAAGAGGTATGTGACTGCTGCCGAGGACAAGGAACTGGAAGCGAAGATTGCGGTAGTTGAAAAATA
47% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000071564.14
ENSMUST00000131893.2
CDS CAA 72 bp AAAACGTGCACAGTGTCAAACTCTAACCCTTTGGCTTaGTGCACGGTGCCCAAAATGTACTCTGCAAAGTCC +
Preference number: 6 (lower is better)
Translates to: KTCTVSNSNPLA*CTVPKMYSAKS
Trigger: GGACTTTGCAGAGTACATTTTGGGCACCGTGCACAAAGCCAAAGGGTTAGAGTTTGACACTGTGCACGTTTT
47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000071564.14
CDS CAA 72 bp TCATCCAAAACGTGCACAGTGTCAAACTCTAACCCTTaGGCTTTGTGCACGGTGCCCAAAATGTACTCTGCA +
Preference number: 6 (lower is better)
Translates to: SSKTCTVSNSNP*ALCTVPKMYSA
Trigger: TGCAGAGTACATTTTGGGCACCGTGCACAAAGCCAAAGGGTTAGAGTTTGACACTGTGCACGTTTTGGATGA
47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000071564.14
CDS CAA 72 bp ATGATAGCATCATGTGTCATTTGGTATGCCTCTTCTTaGCATTCCCCCAGCTTCCGCATGTTGTCCCAGAGT +
Preference number: 6 (lower is better)
Translates to: MIASCVIWYASS*HSPSFRMLSQS
Trigger: ACTCTGGGACAACATGCGGAAGCTGGGGGAATGCAAAGAAGAGGCATACCAAATGACACATGATGCTATCAT
47% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000131893.2
CDS TCA 72 bp ATGCTCTTGTTGAACGTGACATACAGAAACCTGCTCTaGGACCACTTCTCAGCATACTTGACCAGGGTAGAA +
Preference number: 6 (lower is better)
Translates to: MLLLNVTYRNLL*DHFSAYLTRVE
Trigger: TTCTACCCTGGTCAAGTATGCTGAGAAGTGGTCTCAGAGCAGGTTTCTGTATGTCACGTTCAACAAGAGCAT
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000071564.14
CDS TCA 72 bp ATGATGAGGTCTCGTTTCCTCCGTTCTTCCTCTGGCTaGAGAAGGGTCCAAATGTCAATGATTCTGTCCAAT +
Preference number: 6 (lower is better)
Translates to: MMRSRFLRSSSG*RRVQMSMILSN
Trigger: ATTGGACAGAATCATTGACATTTGGACCCTTCTTCAGCCAGAGGAAGAACGGAGGAAACGAGACCTCATCAT
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000071564.14
ENSMUST00000131893.2
CDS GCA 72 bp CCAGAGTTTCAAATAGCCATCATGTGTCATTTGGTATaGCTCTTCTTTGCATTCCCCCAGCTTCCGCATGTT +
Preference number: 6 (lower is better)
Translates to: PEFQIAIMCHLV*LFFAFPQLPHV
Trigger: AACATGCGGAAGCTGGGGGAATGCAAAGAAGAGGCATACCAAATGACACATGATGGCTATTTGAAACTCTGG
46% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000071564.14
CDS CAA 72 bp TTTTCTATGCCATGGCTCGAGAGAATGCCATCCACTTaGCTGACAGCCTGCTCTTCATTGATCAAGTATCGA +
Preference number: 6 (lower is better)
Translates to: FSMPWLERMPST*LTACSSLIKYR
Trigger: TCGATACTTGATCAATGAAGAGCAGGCTGTCAGCAAAGTGGATGGCATTCTCTCGAGCCATGGCATAGAAAA
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000071564.14
CDS CAA 90 bp AAATCATCCAAAACGTGCACAGTGTCAAACTCTAACCCTTTGGCTTaGTGCACGGTGCCCAAAATGTACTCTGCAAAGTCCAAATCGTCT +
Preference number: 6 (lower is better)
Translates to: KSSKTCTVSNSNPLA*CTVPKMYSAKSKSS
Trigger: AGACGATTTGGACTTTGCAGAGTACATTTTGGGCACCGTGCACAAAGCCAAAGGGTTAGAGTTTGACACTGTGCACGTTTTGGATGATTT
44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000071564.14
CDS CAA 90 bp TTCACGAAATCATCCAAAACGTGCACAGTGTCAAACTCTAACCCTTaGGCTTTGTGCACGGTGCCCAAAATGTACTCTGCAAAGTCCAAA +
Preference number: 6 (lower is better)
Translates to: FTKSSKTCTVSNSNP*ALCTVPKMYSAKSK
Trigger: TTTGGACTTTGCAGAGTACATTTTGGGCACCGTGCACAAAGCCAAAGGGTTAGAGTTTGACACTGTGCACGTTTTGGATGATTTCGTGAA
44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000071564.14
CDS GCA 72 bp CCAACAGAATTGCTTTTGGCCATGTCATTGGTACAGTaGTGGTGGCCAGCTAGGAAGAACTCAGAAATATAT +
Preference number: 6 (lower is better)
Translates to: PTELLLAMSLVQ*WWPARKNSEIY
Trigger: ATATATTTCTGAGTTCTTCCTAGCTGGCCACCAGCACTGTACCAATGACATGGCCAAAAGCAATTCTGTTGG
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000071564.14
CDS CCA 72 bp GCCATAATTTTTACCACCTGGAGAGGCTCCATCTTATaGTTCAGAATCAGCTGTTGTTCATGTGTTAGCTGG +
Preference number: 6 (lower is better)
Translates to: AIIFTTWRGSIL*FRISCCSCVSW
Trigger: CCAGCTAACACATGAACAACAGCTGATTCTGAACCATAAGATGGAGCCTCTCCAGGTGGTAAAAATTATGGC
44% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000071564.14
CDS CCA 72 bp TTTAATGATGAGGTCTCGTTTCCTCCGTTCTTCCTCTaGCTGAAGAAGGGTCCAAATGTCAATGATTCTGTC +
Preference number: 6 (lower is better)
Translates to: FNDEVSFPPFFL*LKKGPNVNDSV
Trigger: GACAGAATCATTGACATTTGGACCCTTCTTCAGCCAGAGGAAGAACGGAGGAAACGAGACCTCATCATTAAA
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000071564.14
ENSMUST00000131893.2
CDS CCA 72 bp CCCAAAATGTACTCTGCAAAGTCCAAATCGTCTATGTaGCATCTCTCTATCCTTTCTACCAGTTCTGGAATC +
Preference number: 6 (lower is better)
Translates to: PKMYSAKSKSSM*HLSILSTSSGI
Trigger: GATTCCAGAACTGGTAGAAAGGATAGAGAGATGCCACATAGACGATTTGGACTTTGCAGAGTACATTTTGGG
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000071564.14
ENSMUST00000131893.2
CDS CAA 72 bp ATGTTCTCCAGGGATTTGGTCATTATGAGCCGCTTCTaGGCACGAGTAACAGCAACATACAGTAAATTCCAT +
Preference number: 6 (lower is better)
Translates to: MFSRDLVIMSRF*ARVTATYSKFH
Trigger: ATGGAATTTACTGTATGTTGCTGTTACTCGTGCCAAGAAGCGGCTCATAATGACCAAATCCCTGGAGAACAT
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000071564.14
CDS CAA 90 bp ATGTGGCATCTCTCTATCCTTTCTACCAGTTCTGGAATCCTGATATaGTATTTTTCAACTACCGCAATCTTCGCTTCCAGTTCCTTGTCC +
Preference number: 6 (lower is better)
Translates to: MWHLSILSTSSGILI*YFSTTAIFASSSLS
Trigger: GGACAAGGAACTGGAAGCGAAGATTGCGGTAGTTGAAAAATACAATATCAGGATTCCAGAACTGGTAGAAAGGATAGAGAGATGCCACAT
42% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000071564.14
ENSMUST00000131893.2
CDS CCA 72 bp GTCTATGTGGCATCTCTCTATCCTTTCTACCAGTTCTaGAATCCTGATATTGTATTTTTCAACTACCGCAAT +
Preference number: 6 (lower is better)
Translates to: VYVASLYPFYQF*NPDIVFFNYRN
Trigger: ATTGCGGTAGTTGAAAAATACAATATCAGGATTCCAGAACTGGTAGAAAGGATAGAGAGATGCCACATAGAC
39% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000071564.14
ENSMUST00000131893.2