RADAR | Search for sensor designs | Human genes | Mouse genes | Code

Pregenerated sensors for FARP1 (Mus musculus)

Ensembl gene IDs: ENSMUSG00000025555

Ensembl transcript IDs: ENSMUST00000026635.8, ENSMUST00000135010.8

Found 251 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).

Type Sensor Details
3UTR GCA 90 bp GCCGCCACTGTACACGCCACGCACAGGGCGCTGACGCCCACGTATTaGACTGGGTATCTGCTTCTCCACAGAAAACAACCCCACTACATC +
Preference number: 1 (lower is better)
Translates to: AATVHATHRALTPTY*TGYLLLHRKQPHYI
Trigger: GATGTAGTGGGGTTGTTTTCTGTGGAGAAGCAGATACCCAGTGCAATACGTGGGCGTCAGCGCCCTGTGCGTGGCGTGTACAGTGGCGGC
59% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000026635.8
3UTR CCA 90 bp GACAGCGACCCAGCTGCCCTAGAGAACAGGCAAACAGTTTTCCACTaGGAGGCTCAGGTAGTGTTTGGCAGCCAGGTCCCCCAGAGGAGT +
Preference number: 1 (lower is better)
Translates to: DSDPAALENRQTVFH*EAQVVFGSQVPQRS
Trigger: ACTCCTCTGGGGGACCTGGCTGCCAAACACTACCTGAGCCTCCCAGTGGAAAACTGTTTGCCTGTTCTCTAGGGCAGCTGGGTCGCTGTC
59% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000026635.8
3UTR CCA 90 bp AGAGAACAGGCAAACAGTTTTCCACTGGGAGGCTCAGGTAGTGTTTaGCAGCCAGGTCCCCCAGAGGAGTCTGTCCAGGATGTGGGCTGT +
Preference number: 1 (lower is better)
Translates to: REQANSFPLGGSGSV*QPGPPEESVQDVGC
Trigger: ACAGCCCACATCCTGGACAGACTCCTCTGGGGGACCTGGCTGCCAAACACTACCTGAGCCTCCCAGTGGAAAACTGTTTGCCTGTTCTCT
57% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000026635.8
3UTR CCA 90 bp CACTGTACACGCCACGCACAGGGCGCTGACGCCCACGTATTGCACTaGGTATCTGCTTCTCCACAGAAAACAACCCCACTACATCTTGTA +
Preference number: 1 (lower is better)
Translates to: HCTRHAQGADAHVLH*VSASPQKTTPLHLV
Trigger: TACAAGATGTAGTGGGGTTGTTTTCTGTGGAGAAGCAGATACCCAGTGCAATACGTGGGCGTCAGCGCCCTGTGCGTGGCGTGTACAGTG
54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000026635.8
3UTR TCA 90 bp TTCGGTGGAATGGAGTACTCCACAAGTTGCTTATCTGAGAAAAGTTaGGTCCTACGAATGTCCTATTATAAAAGTAGAAAGATTGGAAAA +
Preference number: 1 (lower is better)
Translates to: FGGMEYSTSCLSEKS*VLRMSYYKSRKIGK
Trigger: TTTTCCAATCTTTCTACTTTTATAATAGGACATTCGTAGGACTCAACTTTTCTCAGATAAGCAACTTGTGGAGTACTCCATTCCACCGAA
37% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000026635.8
3UTR CCA 90 bp GGTGTGAGGTATTTTTATTCCCTTTTGTTAGTACTTAGAACCATCTaGTACATTGTAAGGCAAATGATTGATACATCTTACTCCTTATCC +
Preference number: 1 (lower is better)
Translates to: GVRYFYSLLLVLRTI*YIVRQMIDTSYSLS
Trigger: GGATAAGGAGTAAGATGTATCAATCATTTGCCTTACAATGTACCAGATGGTTCTAAGTACTAACAAAAGGGAATAAAAATACCTCACACC
36% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000026635.8
3UTR CAA 90 bp AGCCGCCACTGTACACGCCACGCACAGGGCGCTGACGCCCACGTATaGCACTGGGTATCTGCTTCTCCACAGAAAACAACCCCACTACAT +
Preference number: 2 (lower is better)
Translates to: SRHCTRHAQGADAHV*HWVSASPQKTTPLH
Trigger: ATGTAGTGGGGTTGTTTTCTGTGGAGAAGCAGATACCCAGTGCAATACGTGGGCGTCAGCGCCCTGTGCGTGGCGTGTACAGTGGCGGCT
58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000026635.8
3UTR-3UTR GCA 90 bp GACCCAGCTGCCCTAGAGAACAGGCAAACAGTTTTCCACTGGGAGGCTCAGGTAGTGGGCAAGAACCACTaGAGATCTTCAACGTGTTCA +
Preference number: 2 (lower is better)
Translates to: DPAALENRQTVFHWEAQVVGKNH*RSSTCS
Trigger: TGAACACGTTGAAGATCTGCAGTGGTTCTTGCCCAC...TACCTGAGCCTCCCAGTGGAAAACTGTTTGCCTGTTCTCTAGGGCAGCTGGGTC
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000026635.8
3UTR CAA 90 bp ATAGATACTACTAGAGAATGTGCAGGTTCAAACCAAACCACGGCCTaGCAGGGAATTGGGGCCAATCACTGGGGCTGGGACTACGTACCA +
Preference number: 2 (lower is better)
Translates to: IDTTRECAGSNQTTA*QGIGANHWGWDYVP
Trigger: TGGTACGTAGTCCCAGCCCCAGTGATTGGCCCCAATTCCCTGCAAGGCCGTGGTTTGGTTTGAACCTGCACATTCTCTAGTAGTATCTAT
51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000026635.8
3UTR-3UTR CCA 90 bp ACGCCCACGTATTGCACTGGGTATCTGCTTCTCCACAGAAAACAACCCCACTACCCAAAGAGGTTGGTATaGGGAAGACAATGTTTGGAG +
Preference number: 2 (lower is better)
Translates to: TPTYCTGYLLLHRKQPHYPKRLV*GRQCLE
Trigger: CTCCAAACATTGTCTTCCCCATACCAACCTCTTTGG...GTAGTGGGGTTGTTTTCTGTGGAGAAGCAGATACCCAGTGCAATACGTGGGCGT
49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000026635.8
3UTR-3UTR TCA 90 bp AGCTGCCCTAGAGAACAGGCAAACAGTTTTCCACTGGGAGGCTCAGGTAGTGTTAGCTTCTCATGCTTGTaGAACAGACAGCAAAACATC +
Preference number: 2 (lower is better)
Translates to: SCPREQANSFPLGGSGSVSFSCL*NRQQNI
Trigger: GATGTTTTGCTGTCTGTTTCACAAGCATGAGAAGCT...AACACTACCTGAGCCTCCCAGTGGAAAACTGTTTGCCTGTTCTCTAGGGCAGCT
48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000026635.8
3UTR-3UTR CCA 90 bp AGCTGCCCTAGAGAACAGGCAAACAGTTTTCCACTGGGAGGCTCAGGTAGTGTTATGTGTTGTGAACACTaGAAAAATCCGTTTGGGAAA +
Preference number: 2 (lower is better)
Translates to: SCPREQANSFPLGGSGSVMCCEH*KNPFGK
Trigger: TTTCCCAAACGGATTTTTCCAGTGTTCACAACACAT...AACACTACCTGAGCCTCCCAGTGGAAAACTGTTTGCCTGTTCTCTAGGGCAGCT
46% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000026635.8
3UTR GCA 72 bp CTGCAGGTGAACGGATGTATGGCCCTGCGCTGGCCATaGTGCAGGACGAGACTGTCGTTTGGCACTCTTGAT +
Preference number: 3 (lower is better)
Translates to: LQVNGCMALRWP*CRTRLSFGTLD
Trigger: ATCAAGAGTGCCAAACGACAGTCTCGTCCTGCAGCATGGCCAGCGCAGGGCCATACATCCGTTCACCTGCAG
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000026635.8
3UTR GCA 72 bp GTACACGCCACGCACAGGGCGCTGACGCCCACGTATTaGACTGGGTATCTGCTTCTCCACAGAAAACAACCC +
Preference number: 3 (lower is better)
Translates to: VHATHRALTPTY*TGYLLLHRKQP
Trigger: GGGTTGTTTTCTGTGGAGAAGCAGATACCCAGTGCAATACGTGGGCGTCAGCGCCCTGTGCGTGGCGTGTAC
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000026635.8
3UTR CCA 72 bp CGCCACGCACAGGGCGCTGACGCCCACGTATTGCACTaGGTATCTGCTTCTCCACAGAAAACAACCCCACTA +
Preference number: 3 (lower is better)
Translates to: RHAQGADAHVLH*VSASPQKTTPL
Trigger: TAGTGGGGTTGTTTTCTGTGGAGAAGCAGATACCCAGTGCAATACGTGGGCGTCAGCGCCCTGTGCGTGGCG
58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000026635.8
3UTR CCA 72 bp CCAGCTGCCCTAGAGAACAGGCAAACAGTTTTCCACTaGGAGGCTCAGGTAGTGTTTGGCAGCCAGGTCCCC +
Preference number: 3 (lower is better)
Translates to: PAALENRQTVFH*EAQVVFGSQVP
Trigger: GGGGACCTGGCTGCCAAACACTACCTGAGCCTCCCAGTGGAAAACTGTTTGCCTGTTCTCTAGGGCAGCTGG
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000026635.8
3UTR CCA 72 bp GCAAACAGTTTTCCACTGGGAGGCTCAGGTAGTGTTTaGCAGCCAGGTCCCCCAGAGGAGTCTGTCCAGGAT +
Preference number: 3 (lower is better)
Translates to: ANSFPLGGSGSV*QPGPPEESVQD
Trigger: ATCCTGGACAGACTCCTCTGGGGGACCTGGCTGCCAAACACTACCTGAGCCTCCCAGTGGAAAACTGTTTGC
57% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000026635.8
3UTR TCA 72 bp CTGGAAAAATCCGTTTGGGAAACAGCAGTCTGCAGGTaGACGGATGTATGGCCCTGCGCTGGCCATGCTGCA +
Preference number: 3 (lower is better)
Translates to: LEKSVWETAVCR*TDVWPCAGHAA
Trigger: TGCAGCATGGCCAGCGCAGGGCCATACATCCGTTCACCTGCAGACTGCTGTTTCCCAAACGGATTTTTCCAG
56% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000026635.8
3UTR CCA 72 bp TGCAGGTTCAAACCAAACCACGGCCTTGCAGGGAATTaGGGCCAATCACTGGGGCTGGGACTACGTACCATT +
Preference number: 3 (lower is better)
Translates to: CRFKPNHGLAGN*GQSLGLGLRTI
Trigger: AATGGTACGTAGTCCCAGCCCCAGTGATTGGCCCCAATTCCCTGCAAGGCCGTGGTTTGGTTTGAACCTGCA
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000026635.8
3UTR-3UTR CAA 90 bp AACAGTTTTCCACTGGGAGGCTCAGGTAGTGTTTGGCAGCCAGGTCCCCCAGAGGGCTGTCCAAAGAGGTaGGTATGGGGAAGACAATGT +
Preference number: 3 (lower is better)
Translates to: NSFPLGGSGSVWQPGPPEGCPKR*VWGRQC
Trigger: ACATTGTCTTCCCCATACCAACCTCTTTGGACAGCC...CTCTGGGGGACCTGGCTGCCAAACACTACCTGAGCCTCCCAGTGGAAAACTGTT
54% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 1 transcripts:
ENSMUST00000026635.8
3UTR CCA 72 bp TGGGGTATAGGGCACAGGGAGAGGGGACTGCAGACCTaGCCAGCTTGCGTTATAGAGGATTCTATGCATGAA +
Preference number: 3 (lower is better)
Translates to: WGIGHRERGLQT*PACVIEDSMHE
Trigger: TTCATGCATAGAATCCTCTATAACGCAAGCTGGCCAGGTCTGCAGTCCCCTCTCCCTGTGCCCTATACCCCA
54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000026635.8
3UTR-3UTR CAA 90 bp CAGCGACCCAGCTGCCCTAGAGAACAGGCAAACAGTTTTCCACTGGGAGGCTCAGGAATCACAAACAGCTaGGTCAACTTCCGCCAAGAA +
Preference number: 3 (lower is better)
Translates to: QRPSCPREQANSFPLGGSGITNS*VNFRQE
Trigger: TTCTTGGCGGAAGTTGACCAAGCTGTTTGTGATTCC...TGAGCCTCCCAGTGGAAAACTGTTTGCCTGTTCTCTAGGGCAGCTGGGTCGCTG
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000026635.8
3UTR CCA 72 bp ACCAGGGTCTCGCTGGAGCCCACCCCTTCGGTGGAATaGAGTACTCCACAAGTTGCTTATCTGAGAAAAGTT +
Preference number: 3 (lower is better)
Translates to: TRVSLEPTPSVE*STPQVAYLRKV
Trigger: AACTTTTCTCAGATAAGCAACTTGTGGAGTACTCCATTCCACCGAAGGGGTGGGCTCCAGCGAGACCCTGGT
53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000026635.8
3UTR-3UTR CAA 90 bp CAGCGACCCAGCTGCCCTAGAGAACAGGCAAACAGTTTTCCACTGGGAGGCTCAACACAGGTGTGGATTTaGCTAGGCTTCATTCTATCC +
Preference number: 3 (lower is better)
Translates to: QRPSCPREQANSFPLGGSTQVWI*LGFILS
Trigger: GGATAGAATGAAGCCTAGCAAAATCCACACCTGTGT...TGAGCCTCCCAGTGGAAAACTGTTTGCCTGTTCTCTAGGGCAGCTGGGTCGCTG
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000026635.8
3UTR TCA 72 bp TTGGTATGGGGAAGACAATGTTTGGAGATAGGCCCATaGAGGGATGTGGGCAAGAACCACTGCAGATCTTCA +
Preference number: 3 (lower is better)
Translates to: LVWGRQCLEIGP*RDVGKNHCRSS
Trigger: TGAAGATCTGCAGTGGTTCTTGCCCACATCCCTTCATGGGCCTATCTCCAAACATTGTCTTCCCCATACCAA
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000026635.8
3UTR-3UTR CAA 90 bp GGTACAATAGATACTACTAGAGAATGTGCAGGTTCAAACCAAACCACGGCCTTGACTGGAAAAATCCGTTaGGGAAACAGCAGTCTGCAG +
Preference number: 3 (lower is better)
Translates to: GTIDTTRECAGSNQTTALTGKIR*GNSSLQ
Trigger: CTGCAGACTGCTGTTTCCCAAACGGATTTTTCCAGT...CAAGGCCGTGGTTTGGTTTGAACCTGCACATTCTCTAGTAGTATCTATTGTACC
46% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000026635.8
CDS-3UTR TCA 90 bp GGCAAGACACCGCCCTCCCACCCCCTAGGCCTGGAGGGAAAGGCTGTCCAAAGACGGTGCTGTGGGCTGTaGGACCAGGCTCCTGGTGGA +
Preference number: 4 (lower is better)
Translates to: GKTPPSHPLGLEGKAVQRRCCGL*DQAPGG
Trigger: TCCACCAGGAGCCTGGTCTCACAGCCCACAGCACCG...TCTTTGGACAGCCTTTCCCTCCAGGCCTAGGGGGTGGGAGGGCGGTGTCTTGCC
66% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000026635.8
CDS-3UTR TCA 90 bp GGCAAGACACCGCCCTCCCACCCCCTAGGCCTGGAGGGAAAGGCTGTCCAAAGATCTGACGTGGGCATTTaGGCGGCCTTCCCACAGGGC +
Preference number: 4 (lower is better)
Translates to: GKTPPSHPLGLEGKAVQRSDVGI*AAFPQG
Trigger: GCCCTGTGGGAAGGCCGCTCAAATGCCCACGTCAGA...TCTTTGGACAGCCTTTCCCTCCAGGCCTAGGGGGTGGGAGGGCGGTGTCTTGCC
64% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000026635.8
CDS-3UTR GCA 90 bp TGTGGCGACCAGGGTCTCGCTGGAGCCCACCCCTTCGGTGGAATGGAGTACTCCGCCGGATGCCGTCCTTaGCACCCTCTTCCTCCTCTT +
Preference number: 4 (lower is better)
Translates to: CGDQGLAGAHPFGGMEYSAGCRP*HPLPPL
Trigger: AAGAGGAGGAAGAGGGTGGCAAGGACGGCATCCGGC...GGAGTACTCCATTCCACCGAAGGGGTGGGCTCCAGCGAGACCCTGGTCGCCACA
63% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000026635.8
CDS-3UTR GCA 90 bp TTCCGCCAAGAAAGTAGGTGTGGCGACCAGGGTCTCGCTGGAGCCCACCCCTTCGCCACGATGATAGATTaGCGCTGGCCCCGCAGGGTC +
Preference number: 4 (lower is better)
Translates to: FRQESRCGDQGLAGAHPFATMID*RWPRRV
Trigger: GACCCTGCGGGGCCAGCGGCAATCTATCATCGTGGC...GAAGGGGTGGGCTCCAGCGAGACCCTGGTCGCCACACCTACTTTCTTGGCGGAA
63% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000026635.8
CDS-3UTR TCA 90 bp TGTGGCGACCAGGGTCTCGCTGGAGCCCACCCCTTCGGTGGAATGGAGTACTCCGAAAGCGCTTCCGCTTaGAGCTCAGCTTCCGCACCT +
Preference number: 4 (lower is better)
Translates to: CGDQGLAGAHPFGGMEYSESASA*SSASAP
Trigger: AGGTGCGGAAGCTGAGCTTCAAGCGGAAGCGCTTTC...GGAGTACTCCATTCCACCGAAGGGGTGGGCTCCAGCGAGACCCTGGTCGCCACA
62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000026635.8
CDS-3UTR TCA 90 bp ACTAAAGCGCCCCTGGAGAATGGCAAGACACCGCCCTCCCACCCCCTAGGCCTGGACAGCTCTGAAAGGTaGGGGCTACCAGTCAGGGAG +
Preference number: 4 (lower is better)
Translates to: TKAPLENGKTPPSHPLGLDSSER*GLPVRE
Trigger: CTCCCTGACTGGTAGCCCTCACCTTTCAGAGCTGTC...CAGGCCTAGGGGGTGGGAGGGCGGTGTCTTGCCATTCTCCAGGGGCGCTTTAGT
62% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 1 transcripts:
ENSMUST00000026635.8
CDS-3UTR GCA 90 bp TGTGGCGACCAGGGTCTCGCTGGAGCCCACCCCTTCGGTGGAATGGAGTACTCCGGTTACTTGGCCGGATaGCGTCCTTGCCACCCTCTT +
Preference number: 4 (lower is better)
Translates to: CGDQGLAGAHPFGGMEYSGYLAG*RPCHPL
Trigger: AAGAGGGTGGCAAGGACGGCATCCGGCCAAGTAACC...GGAGTACTCCATTCCACCGAAGGGGTGGGCTCCAGCGAGACCCTGGTCGCCACA
62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000026635.8
CDS-3UTR CCA 90 bp ACTAAAGCGCCCCTGGAGAATGGCAAGACACCGCCCTCCCACCCCCTAGGCCTGGCCACCTCTAGGAGCTaGAAATCTGACTCTGCCGGG +
Preference number: 4 (lower is better)
Translates to: TKAPLENGKTPPSHPLGLATSRS*KSDSAG
Trigger: CCCGGCAGAGTCAGATTTCCAGCTCCTAGAGGTGGC...CAGGCCTAGGGGGTGGGAGGGCGGTGTCTTGCCATTCTCCAGGGGCGCTTTAGT
62% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000026635.8
CDS-3UTR CCA 90 bp ACTAAAGCGCCCCTGGAGAATGGCAAGACACCGCCCTCCCACCCCCTAGGCCTGCTGAATTCGGTGCTGTaGGCTGTGAGACCAGGCTCC +
Preference number: 4 (lower is better)
Translates to: TKAPLENGKTPPSHPLGLLNSVL*AVRPGS
Trigger: GGAGCCTGGTCTCACAGCCCACAGCACCGAATTCAG...CAGGCCTAGGGGGTGGGAGGGCGGTGTCTTGCCATTCTCCAGGGGCGCTTTAGT
62% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000026635.8
CDS-3UTR GCA 90 bp CAGCGACCCAGCTGCCCTAGAGAACAGGCAAACAGTTTTCCACTGGGAGGCTCACAGTCAGGGAGCCTGTaGTTGGCTGCGGGGGCTGAG +
Preference number: 4 (lower is better)
Translates to: QRPSCPREQANSFPLGGSQSGSL*LAAGAE
Trigger: CTCAGCCCCCGCAGCCAAGCACAGGCTCCCTGACTG...TGAGCCTCCCAGTGGAAAACTGTTTGCCTGTTCTCTAGGGCAGCTGGGTCGCTG
61% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000026635.8
CDS-3UTR GCA 90 bp GGCAAGACACCGCCCTCCCACCCCCTAGGCCTGGAGGGAAAGGCTGTCCAAAGAATCAGGGGAGAGGCCTaGTTGTTGTCAGGACTCAGG +
Preference number: 4 (lower is better)
Translates to: GKTPPSHPLGLEGKAVQRIRGEA*LLSGLR
Trigger: CCTGAGTCCTGACAACAAGCAGGCCTCTCCCCTGAT...TCTTTGGACAGCCTTTCCCTCCAGGCCTAGGGGGTGGGAGGGCGGTGTCTTGCC
61% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000026635.8
CDS-3UTR GCA 90 bp GGCAAGACACCGCCCTCCCACCCCCTAGGCCTGGAGGGAAAGGCTGTCCAAAGAGGTCCTTCAGGTACGTaGGCTCTGTGGTGGAGACTT +
Preference number: 4 (lower is better)
Translates to: GKTPPSHPLGLEGKAVQRGPSGT*ALWWRL
Trigger: AAGTCTCCACCACAGAGCGCACGTACCTGAAGGACC...TCTTTGGACAGCCTTTCCCTCCAGGCCTAGGGGGTGGGAGGGCGGTGTCTTGCC
61% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000026635.8
CDS-3UTR CCA 90 bp GGCAAGACACCGCCCTCCCACCCCCTAGGCCTGGAGGGAAAGGCTGTCCAAAGAGAGAGGCTGAGCTGGTaGCACTTCGGATCACTTCCA +
Preference number: 4 (lower is better)
Translates to: GKTPPSHPLGLEGKAVQRERLSW*HFGSLP
Trigger: TGGAAGTGATCCGAAGTGCCACCAGCTCAGCCTCTC...TCTTTGGACAGCCTTTCCCTCCAGGCCTAGGGGGTGGGAGGGCGGTGTCTTGCC
61% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000026635.8
CDS-3UTR TCA 90 bp TTCCGCCAAGAAAGTAGGTGTGGCGACCAGGGTCTCGCTGGAGCCCACCCCTTCCCATTTTTCCATCTCTaGCCGGGAACTGGCAGCCAC +
Preference number: 4 (lower is better)
Translates to: FRQESRCGDQGLAGAHPFPFFHL*PGTGSH
Trigger: GTGGCTGCCAGTTCCCGGTCAGAGATGGAAAAATGG...GAAGGGGTGGGCTCCAGCGAGACCCTGGTCGCCACACCTACTTTCTTGGCGGAA
60% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000026635.8
CDS-3UTR TCA 90 bp GGAGATAGGCCCATGAAGGGATGTGGGCAAGAACCACTGCAGATCTTCAACGTGATCGTGTTGCCACGGTaGGGGGCCTGGCGCTCCAGC +
Preference number: 4 (lower is better)
Translates to: GDRPMKGCGQEPLQIFNVIVLPR*GAWRSS
Trigger: GCTGGAGCGCCAGGCCCCTCACCGTGGCAACACGAT...CACGTTGAAGATCTGCAGTGGTTCTTGCCCACATCCCTTCATGGGCCTATCTCC
60% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000026635.8
CDS-3UTR GCA 90 bp TGTGGCGACCAGGGTCTCGCTGGAGCCCACCCCTTCGGTGGAATGGAGTACTCCACCACCCACAGCTTCTaGCAGCCATTGCTGTTCTTG +
Preference number: 4 (lower is better)
Translates to: CGDQGLAGAHPFGGMEYSTTHSF*QPLLFL
Trigger: CAAGAACAGCAATGGCTGGCAGAAGCTGTGGGTGGT...GGAGTACTCCATTCCACCGAAGGGGTGGGCTCCAGCGAGACCCTGGTCGCCACA
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000026635.8
CDS-3UTR CCA 90 bp GCTGGAGCCCACCCCTTCGGTGGAATGGAGTACTCCACAAGTTGCTTATCTGAGCAGGGAGCCTGTGCTTaGCTGCGGGGGCTGAGGGTT +
Preference number: 4 (lower is better)
Translates to: AGAHPFGGMEYSTSCLSEQGACA*LRGLRV
Trigger: AACCCTCAGCCCCCGCAGCCAAGCACAGGCTCCCTG...CTCAGATAAGCAACTTGTGGAGTACTCCATTCCACCGAAGGGGTGGGCTCCAGC
60% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000026635.8
CDS-3UTR TCA 90 bp GACCCAGCTGCCCTAGAGAACAGGCAAACAGTTTTCCACTGGGAGGCTCAGGTACTCGTTCCAAGGTGCTaGTCCCCGAGTTCTCTGGGG +
Preference number: 4 (lower is better)
Translates to: DPAALENRQTVFHWEAQVLVPRC*SPSSLG
Trigger: CCCCAGAGAACTCGGGGATCAGCACCTTGGAACGAG...TACCTGAGCCTCCCAGTGGAAAACTGTTTGCCTGTTCTCTAGGGCAGCTGGGTC
58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000026635.8
CDS-3UTR TCA 90 bp TGTGGCGACCAGGGTCTCGCTGGAGCCCACCCCTTCGGTGGAATGGAGTACTCCGGAAGTTCTCCATCTTaGTCATGGTACCATGCAGCT +
Preference number: 4 (lower is better)
Translates to: CGDQGLAGAHPFGGMEYSGSSPS*SWYHAA
Trigger: AGCTGCATGGTACCATGATCAAGATGGAGAACTTCC...GGAGTACTCCATTCCACCGAAGGGGTGGGCTCCAGCGAGACCCTGGTCGCCACA
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000026635.8
CDS-3UTR CCA 90 bp GCTGGAGCCCACCCCTTCGGTGGAATGGAGTACTCCACAAGTTGCTTATCTGAGCCTGGTCAGCCGCTGTaGCTTCATCCGGGGACTTGT +
Preference number: 4 (lower is better)
Translates to: AGAHPFGGMEYSTSCLSEPGQPL*LHPGTC
Trigger: ACAAGTCCCCGGATGAAGCCACAGCGGCTGACCAGG...CTCAGATAAGCAACTTGTGGAGTACTCCATTCCACCGAAGGGGTGGGCTCCAGC
58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000026635.8
CDS-3UTR TCA 90 bp GGAGATAGGCCCATGAAGGGATGTGGGCAAGAACCACTGCAGATCTTCAACGTGCAGCTCTGCAGTCCCTaGAGTCGGCGTGGTTTGGTG +
Preference number: 4 (lower is better)
Translates to: GDRPMKGCGQEPLQIFNVQLCSP*SRRGLV
Trigger: CACCAAACCACGCCGACTTCAGGGACTGCAGAGCTG...CACGTTGAAGATCTGCAGTGGTTCTTGCCCACATCCCTTCATGGGCCTATCTCC
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000026635.8
CDS-3UTR GCA 90 bp AACAGTTTTCCACTGGGAGGCTCAGGTAGTGTTTGGCAGCCAGGTCCCCCAGAGCGTTACACGTCAGCCTaGCTTGAGCCAAGTCCTGCT +
Preference number: 4 (lower is better)
Translates to: NSFPLGGSGSVWQPGPPERYTSA*LEPSPA
Trigger: AGCAGGACTTGGCTCAAGGCAGGCTGACGTGTAACG...CTCTGGGGGACCTGGCTGCCAAACACTACCTGAGCCTCCCAGTGGAAAACTGTT
57% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000026635.8
CDS-3UTR GCA 90 bp GGAGATAGGCCCATGAAGGGATGTGGGCAAGAACCACTGCAGATCTTCAACGTGCGATGCCAGCACACGTaGACCATCGTGTTGCCACGG +
Preference number: 4 (lower is better)
Translates to: GDRPMKGCGQEPLQIFNVRCQHT*TIVLPR
Trigger: CCGTGGCAACACGATGGTGCACGTGTGCTGGCATCG...CACGTTGAAGATCTGCAGTGGTTCTTGCCCACATCCCTTCATGGGCCTATCTCC
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000026635.8
CDS-3UTR CCA 90 bp GGAGATAGGCCCATGAAGGGATGTGGGCAAGAACCACTGCAGATCTTCAACGTGCTGTGCTTCCACAGGTaGGCCGCCAGGTGCTTCATG +
Preference number: 4 (lower is better)
Translates to: GDRPMKGCGQEPLQIFNVLCFHR*AARCFM
Trigger: CATGAAGCACCTGGCGGCCCACCTGTGGAAGCACAG...CACGTTGAAGATCTGCAGTGGTTCTTGCCCACATCCCTTCATGGGCCTATCTCC
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000026635.8
CDS-3UTR CCA 90 bp GCTGGAGCCCACCCCTTCGGTGGAATGGAGTACTCCACAAGTTGCTTATCTGAGGAAGTCGGCGTGGTTTaGTGGGTGGTGCTTGCACAG +
Preference number: 4 (lower is better)
Translates to: AGAHPFGGMEYSTSCLSEEVGVV*WVVLAQ
Trigger: CTGTGCAAGCACCACCCACCAAACCACGCCGACTTC...CTCAGATAAGCAACTTGTGGAGTACTCCATTCCACCGAAGGGGTGGGCTCCAGC
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000026635.8
CDS-3UTR CCA 90 bp ACTAAAGCGCCCCTGGAGAATGGCAAGACACCGCCCTCCCACCCCCTAGGCCTGAGCTCATGCAGCTTCTaGAAGTTCTCCATCTTGATC +
Preference number: 4 (lower is better)
Translates to: TKAPLENGKTPPSHPLGLSSCSF*KFSILI
Trigger: GATCAAGATGGAGAACTTCCAGAAGCTGCATGAGCT...CAGGCCTAGGGGGTGGGAGGGCGGTGTCTTGCCATTCTCCAGGGGCGCTTTAGT
57% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000026635.8
CDS-3UTR CCA 90 bp GGAGATAGGCCCATGAAGGGATGTGGGCAAGAACCACTGCAGATCTTCAACGTGATGATAGATTGCCGCTaGCCCCGCAGGGTCAGGCAG +
Preference number: 4 (lower is better)
Translates to: GDRPMKGCGQEPLQIFNVMIDCR*PRRVRQ
Trigger: CTGCCTGACCCTGCGGGGCCAGCGGCAATCTATCAT...CACGTTGAAGATCTGCAGTGGTTCTTGCCCACATCCCTTCATGGGCCTATCTCC
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000026635.8
3UTR CAA 72 bp TGTACACGCCACGCACAGGGCGCTGACGCCCACGTATaGCACTGGGTATCTGCTTCTCCACAGAAAACAACC +
Preference number: 4 (lower is better)
Translates to: CTRHAQGADAHV*HWVSASPQKTT
Trigger: GGTTGTTTTCTGTGGAGAAGCAGATACCCAGTGCAATACGTGGGCGTCAGCGCCCTGTGCGTGGCGTGTACA
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000026635.8
3UTR CAA 72 bp GTGCAGGTTCAAACCAAACCACGGCCTTGCAGGGAATaGGGGCCAATCACTGGGGCTGGGACTACGTACCAT +
Preference number: 4 (lower is better)
Translates to: VQVQTKPRPCRE*GPITGAGTTYH
Trigger: ATGGTACGTAGTCCCAGCCCCAGTGATTGGCCCCAATTCCCTGCAAGGCCGTGGTTTGGTTTGAACCTGCAC
57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000026635.8
CDS-3UTR GCA 90 bp ACTAAAGCGCCCCTGGAGAATGGCAAGACACCGCCCTCCCACCCCCTAGGCCTGTGGTGGAGTGGATCTTaGTGTGCTTTCTTTCAAACT +
Preference number: 4 (lower is better)
Translates to: TKAPLENGKTPPSHPLGLWWSGS*CAFFQT
Trigger: AGTTTGAAAGAAAGCACAGCAAGATCCACTCCACCA...CAGGCCTAGGGGGTGGGAGGGCGGTGTCTTGCCATTCTCCAGGGGCGCTTTAGT
56% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000026635.8
CDS-3UTR GCA 90 bp TTCCGCCAAGAAAGTAGGTGTGGCGACCAGGGTCTCGCTGGAGCCCACCCCTTCTCTTTCTTGAGCTCATaGAGCTTCTGGAAGTTCTCC +
Preference number: 4 (lower is better)
Translates to: FRQESRCGDQGLAGAHPFSFLSS*SFWKFS
Trigger: GGAGAACTTCCAGAAGCTGCATGAGCTCAAGAAAGA...GAAGGGGTGGGCTCCAGCGAGACCCTGGTCGCCACACCTACTTTCTTGGCGGAA
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000026635.8
CDS-3UTR CCA 90 bp GGAGATAGGCCCATGAAGGGATGTGGGCAAGAACCACTGCAGATCTTCAACGTGCCCTGGCGCTCGTTGTaGAACTTCAAAGGCCTCCTG +
Preference number: 4 (lower is better)
Translates to: GDRPMKGCGQEPLQIFNVPWRSL*NFKGLL
Trigger: CAGGAGGCCTTTGAAGTTCCACAACGAGCGCCAGGG...CACGTTGAAGATCTGCAGTGGTTCTTGCCCACATCCCTTCATGGGCCTATCTCC
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000026635.8
CDS-3UTR CCA 90 bp ACGCCCACGTATTGCACTGGGTATCTGCTTCTCCACAGAAAACAACCCCACTACGCGTGGTTTGGTGGGTaGTGCTTGCACAGCCTCTCC +
Preference number: 4 (lower is better)
Translates to: TPTYCTGYLLLHRKQPHYAWFGG*CLHSLS
Trigger: GGAGAGGCTGTGCAAGCACCACCCACCAAACCACGC...GTAGTGGGGTTGTTTTCTGTGGAGAAGCAGATACCCAGTGCAATACGTGGGCGT
56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000026635.8
CDS-3UTR CCA 90 bp AACAGTTTTCCACTGGGAGGCTCAGGTAGTGTTTGGCAGCCAGGTCCCCCAGAGCGTCATGCCATAGAGTaGGAGCTGTCCGTGGACTTT +
Preference number: 4 (lower is better)
Translates to: NSFPLGGSGSVWQPGPPERHAIE*ELSVDF
Trigger: AAAGTCCACGGACAGCTCCCACTCTATGGCATGACG...CTCTGGGGGACCTGGCTGCCAAACACTACCTGAGCCTCCCAGTGGAAAACTGTT
56% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000026635.8
3UTR CAA 72 bp CCCCCTAGGCCTGGAGGGAAAGGCTGTCCAAAGAGGTaGGTATGGGGAAGACAATGTTTGGAGATAGGCCCA +
Preference number: 4 (lower is better)
Translates to: PPRPGGKGCPKR*VWGRQCLEIGP
Trigger: TGGGCCTATCTCCAAACATTGTCTTCCCCATACCAACCTCTTTGGACAGCCTTTCCCTCCAGGCCTAGGGGG
56% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000026635.8
3UTR CAA 72 bp ACTAGAGAATGTGCAGGTTCAAACCAAACCACGGCCTaGCAGGGAATTGGGGCCAATCACTGGGGCTGGGAC +
Preference number: 4 (lower is better)
Translates to: TRECAGSNQTTA*QGIGANHWGWD
Trigger: GTCCCAGCCCCAGTGATTGGCCCCAATTCCCTGCAAGGCCGTGGTTTGGTTTGAACCTGCACATTCTCTAGT
56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000026635.8
CDS-3UTR TCA 90 bp GACCCAGCTGCCCTAGAGAACAGGCAAACAGTTTTCCACTGGGAGGCTCAGGTATCTCCACAGCAATGCTaGAGTCCACCATGGAGACAC +
Preference number: 4 (lower is better)
Translates to: DPAALENRQTVFHWEAQVSPQQC*SPPWRH
Trigger: GTGTCTCCATGGTGGACTTCAGCATTGCTGTGGAGA...TACCTGAGCCTCCCAGTGGAAAACTGTTTGCCTGTTCTCTAGGGCAGCTGGGTC
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000026635.8
CDS-3UTR GCA 90 bp GCTGGAGCCCACCCCTTCGGTGGAATGGAGTACTCCACAAGTTGCTTATCTGAGAAGTCCTGCTTCACCTaGAGAGCGAACAGGTACCTG +
Preference number: 4 (lower is better)
Translates to: AGAHPFGGMEYSTSCLSEKSCFT*RANRYL
Trigger: CAGGTACCTGTTCGCTCTGCAGGTGAAGCAGGACTT...CTCAGATAAGCAACTTGTGGAGTACTCCATTCCACCGAAGGGGTGGGCTCCAGC
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000026635.8
CDS-3UTR GCA 90 bp ACGCCCACGTATTGCACTGGGTATCTGCTTCTCCACAGAAAACAACCCCACTACTGGAGACACTGGTGCTaGGATGCCAGCACACGTGCA +
Preference number: 4 (lower is better)
Translates to: TPTYCTGYLLLHRKQPHYWRHWC*DASTRA
Trigger: TGCACGTGTGCTGGCATCGCAGCACCAGTGTCTCCA...GTAGTGGGGTTGTTTTCTGTGGAGAAGCAGATACCCAGTGCAATACGTGGGCGT
54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000026635.8
CDS-3UTR GCA 90 bp AGCTGCCCTAGAGAACAGGCAAACAGTTTTCCACTGGGAGGCTCAGGTAGTGTTCCATGGAGACACTGGTaGTGCGATGCCAGCACACGT +
Preference number: 4 (lower is better)
Translates to: SCPREQANSFPLGGSGSVPWRHW*CDASTR
Trigger: ACGTGTGCTGGCATCGCAGCACCAGTGTCTCCATGG...AACACTACCTGAGCCTCCCAGTGGAAAACTGTTTGCCTGTTCTCTAGGGCAGCT
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000026635.8
CDS-3UTR CCA 90 bp GACCCAGCTGCCCTAGAGAACAGGCAAACAGTTTTCCACTGGGAGGCTCAGGTAGTTTTCCTGAAGGTGTaGGCGGTGGTTTCTGTCCTC +
Preference number: 4 (lower is better)
Translates to: DPAALENRQTVFHWEAQVVFLKV*AVVSVL
Trigger: GAGGACAGAAACCACCGCCCACACCTTCAGGAAAAC...TACCTGAGCCTCCCAGTGGAAAACTGTTTGCCTGTTCTCTAGGGCAGCTGGGTC
54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000026635.8
CDS-3UTR CCA 90 bp AGCTGCCCTAGAGAACAGGCAAACAGTTTTCCACTGGGAGGCTCAGGTAGTGTTTCCCTGAAGTCGGCGTaGTTTGGTGGGTGGTGCTTG +
Preference number: 4 (lower is better)
Translates to: SCPREQANSFPLGGSGSVSLKSA*FGGWCL
Trigger: CAAGCACCACCCACCAAACCACGCCGACTTCAGGGA...AACACTACCTGAGCCTCCCAGTGGAAAACTGTTTGCCTGTTCTCTAGGGCAGCT
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000026635.8
CDS-3UTR CCA 90 bp AGCTGCCCTAGAGAACAGGCAAACAGTTTTCCACTGGGAGGCTCAGGTAGTGTTCCACCATGGAGACACTaGTGCTGCGATGCCAGCACA +
Preference number: 4 (lower is better)
Translates to: SCPREQANSFPLGGSGSVPPWRH*CCDAST
Trigger: TGTGCTGGCATCGCAGCACCAGTGTCTCCATGGTGG...AACACTACCTGAGCCTCCCAGTGGAAAACTGTTTGCCTGTTCTCTAGGGCAGCT
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000026635.8
CDS-3UTR CCA 90 bp AACAGTTTTCCACTGGGAGGCTCAGGTAGTGTTTGGCAGCCAGGTCCCCCAGAGAAGTTCCCAGAGAGCTaGTTCTCCACAGCAATGCTG +
Preference number: 4 (lower is better)
Translates to: NSFPLGGSGSVWQPGPPEKFPES*FSTAML
Trigger: CAGCATTGCTGTGGAGAACCAGCTCTCTGGGAACTT...CTCTGGGGGACCTGGCTGCCAAACACTACCTGAGCCTCCCAGTGGAAAACTGTT
54% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000026635.8
CDS-3UTR GCA 90 bp GTATTGCACTGGGTATCTGCTTCTCCACAGAAAACAACCCCACTACATCTTGTATCCAGGGCCTCACTGTaGTTCCACAGGTGGGCCGCC +
Preference number: 4 (lower is better)
Translates to: VLHWVSASPQKTTPLHLVSRASL*FHRWAA
Trigger: GGCGGCCCACCTGTGGAAGCACAGTGAGGCCCTGGA...TACAAGATGTAGTGGGGTTGTTTTCTGTGGAGAAGCAGATACCCAGTGCAATAC
53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000026635.8
CDS-3UTR GCA 90 bp ACGCCCACGTATTGCACTGGGTATCTGCTTCTCCACAGAAAACAACCCCACTACTTGGTGGGTGGTGCTTaGACAGCCTCTCCAGGACAT +
Preference number: 4 (lower is better)
Translates to: TPTYCTGYLLLHRKQPHYLVGGA*TASPGH
Trigger: ATGTCCTGGAGAGGCTGTGCAAGCACCACCCACCAA...GTAGTGGGGTTGTTTTCTGTGGAGAAGCAGATACCCAGTGCAATACGTGGGCGT
53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000026635.8
CDS-3UTR CCA 90 bp GGAGATAGGCCCATGAAGGGATGTGGGCAAGAACCACTGCAGATCTTCAACGTGTCTCTGCCAGGTCAATaGCCATCTGGATGTCCTCCA +
Preference number: 4 (lower is better)
Translates to: GDRPMKGCGQEPLQIFNVSLPGQ*PSGCPP
Trigger: TGGAGGACATCCAGATGGCCATTGACCTGGCAGAGA...CACGTTGAAGATCTGCAGTGGTTCTTGCCCACATCCCTTCATGGGCCTATCTCC
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000026635.8
CDS-3UTR TCA 90 bp GGAGATAGGCCCATGAAGGGATGTGGGCAAGAACCACTGCAGATCTTCAACGTGTCAAGAACTTGCTTCTaGGTCCGACCACTAAACCGG +
Preference number: 4 (lower is better)
Translates to: GDRPMKGCGQEPLQIFNVSRTCF*VRPLNR
Trigger: CCGGTTTAGTGGTCGGACTCAGAAGCAAGTTCTTGA...CACGTTGAAGATCTGCAGTGGTTCTTGCCCACATCCCTTCATGGGCCTATCTCC
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000026635.8
CDS-3UTR TCA 90 bp GACCCAGCTGCCCTAGAGAACAGGCAAACAGTTTTCCACTGGGAGGCTCAGGTAAGGTGCTTCATGCCCTaGATGTTTTTCAGCATGACG +
Preference number: 4 (lower is better)
Translates to: DPAALENRQTVFHWEAQVRCFMP*MFFSMT
Trigger: CGTCATGCTGAAAAACATTCAGGGCATGAAGCACCT...TACCTGAGCCTCCCAGTGGAAAACTGTTTGCCTGTTCTCTAGGGCAGCTGGGTC
52% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000026635.8
CDS-3UTR TCA 90 bp GACCCAGCTGCCCTAGAGAACAGGCAAACAGTTTTCCACTGGGAGGCTCAGGTACGATCAGATCTTTCTTaGGCTCATGCAGCTTCTGGA +
Preference number: 4 (lower is better)
Translates to: DPAALENRQTVFHWEAQVRSDLS*AHAASG
Trigger: TCCAGAAGCTGCATGAGCTCAAGAAAGATCTGATCG...TACCTGAGCCTCCCAGTGGAAAACTGTTTGCCTGTTCTCTAGGGCAGCTGGGTC
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000026635.8
CDS-3UTR GCA 90 bp CAGCGACCCAGCTGCCCTAGAGAACAGGCAAACAGTTTTCCACTGGGAGGCTCACTGAAGAAGGCATGGTaGTCCACACATATTTTCCAG +
Preference number: 4 (lower is better)
Translates to: QRPSCPREQANSFPLGGSLKKAW*STHIFQ
Trigger: CTGGAAAATATGTGTGGAGCACCATGCCTTCTTCAG...TGAGCCTCCCAGTGGAAAACTGTTTGCCTGTTCTCTAGGGCAGCTGGGTCGCTG
52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000026635.8
CDS-3UTR CCA 90 bp GACACCGCCCTCCCACCCCCTAGGCCTGGAGGGAAAGGCTGTCCAAAGAGGTTGTTCAGAAAATTGGTATaGAACTTGTGCAAAGGTTCA +
Preference number: 4 (lower is better)
Translates to: DTALPPPRPGGKGCPKRLFRKLV*NLCKGS
Trigger: TGAACCTTTGCACAAGTTCCATACCAATTTTCTGAA...CAACCTCTTTGGACAGCCTTTCCCTCCAGGCCTAGGGGGTGGGAGGGCGGTGTC
52% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000026635.8
CDS-3UTR TCA 90 bp GTATTGCACTGGGTATCTGCTTCTCCACAGAAAACAACCCCACTACATCTTGTACACGTCAGCCTGCCTTaGGCCAAGTCCTGCTTCACC +
Preference number: 4 (lower is better)
Translates to: VLHWVSASPQKTTPLHLVHVSLP*AKSCFT
Trigger: GGTGAAGCAGGACTTGGCTCAAGGCAGGCTGACGTG...TACAAGATGTAGTGGGGTTGTTTTCTGTGGAGAAGCAGATACCCAGTGCAATAC
51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000026635.8
CDS-3UTR TCA 90 bp GTATTGCACTGGGTATCTGCTTCTCCACAGAAAACAACCCCACTACATCTTGTACATGCTTATAGTGCATaGGCCGGTGCAGCGGGCGCA +
Preference number: 4 (lower is better)
Translates to: VLHWVSASPQKTTPLHLVHAYSA*AGAAGA
Trigger: TGCGCCCGCTGCACCGGCTCATGCACTATAAGCATG...TACAAGATGTAGTGGGGTTGTTTTCTGTGGAGAAGCAGATACCCAGTGCAATAC
51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000026635.8
CDS-3UTR GCA 90 bp GGAGATAGGCCCATGAAGGGATGTGGGCAAGAACCACTGCAGATCTTCAACGTGTCCATTGCTTTTCTCTaGCAGGTCAATGGCCATCTG +
Preference number: 4 (lower is better)
Translates to: GDRPMKGCGQEPLQIFNVSIAFL*QVNGHL
Trigger: CAGATGGCCATTGACCTGGCAGAGAAAAGCAATGGA...CACGTTGAAGATCTGCAGTGGTTCTTGCCCACATCCCTTCATGGGCCTATCTCC
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000026635.8
CDS-3UTR CCA 90 bp GCTGGAGCCCACCCCTTCGGTGGAATGGAGTACTCCACAAGTTGCTTATCTGAGAACAGGCTTTGGCTTTaGCTTAGGTTCTTCGAAGAG +
Preference number: 4 (lower is better)
Translates to: AGAHPFGGMEYSTSCLSENRLWL*LRFFEE
Trigger: CTCTTCGAAGAACCTAAGCCAAAGCCAAAGCCTGTT...CTCAGATAAGCAACTTGTGGAGTACTCCATTCCACCGAAGGGGTGGGCTCCAGC
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000026635.8
CDS-3UTR TCA 90 bp GTATTGCACTGGGTATCTGCTTCTCCACAGAAAACAACCCCACTACATCTTGTATGGCGACAGCCAGGTTaGTCTTGGTGCCTTCCCTGT +
Preference number: 4 (lower is better)
Translates to: VLHWVSASPQKTTPLHLVWRQPG*SWCLPC
Trigger: ACAGGGAAGGCACCAAGATCAACCTGGCTGTCGCCA...TACAAGATGTAGTGGGGTTGTTTTCTGTGGAGAAGCAGATACCCAGTGCAATAC
50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000026635.8
CDS-3UTR TCA 90 bp GGAGATAGGCCCATGAAGGGATGTGGGCAAGAACCACTGCAGATCTTCAACGTGGAATGTTTTTCAGCATaGCGTCCCCGATTCTTTGGT +
Preference number: 4 (lower is better)
Translates to: GDRPMKGCGQEPLQIFNVECFSA*RPRFFG
Trigger: ACCAAAGAATCGGGGACGTCATGCTGAAAAACATTC...CACGTTGAAGATCTGCAGTGGTTCTTGCCCACATCCCTTCATGGGCCTATCTCC
50% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000026635.8
CDS-3UTR TCA 90 bp GGTACAATAGATACTACTAGAGAATGTGCAGGTTCAAACCAAACCACGGCCTTGGCAGGAGGAAGGTGTTaGGCGGCAGGTAACACACCT +
Preference number: 4 (lower is better)
Translates to: GTIDTTRECAGSNQTTALAGGRC*AAGNTP
Trigger: AGGTGTGTTACCTGCCGCTCAACACCTTCCTCCTGC...CAAGGCCGTGGTTTGGTTTGAACCTGCACATTCTCTAGTAGTATCTATTGTACC
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000026635.8
CDS-3UTR TCA 90 bp AAAGACTTGGAGACAGGTACAATAGATACTACTAGAGAATGTGCAGGTTCAAACGTGGGCCCGAGAGGCTaGGCTGGTGGCACTTCGGAT +
Preference number: 4 (lower is better)
Translates to: KDLETGTIDTTRECAGSNVGPRG*AGGTSD
Trigger: ATCCGAAGTGCCACCAGCTCAGCCTCTCGGGCCCAC...GTTTGAACCTGCACATTCTCTAGTAGTATCTATTGTACCTGTCTCCAAGTCTTT
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000026635.8
CDS-3UTR GCA 90 bp GGAGATAGGCCCATGAAGGGATGTGGGCAAGAACCACTGCAGATCTTCAACGTGGAGTGGATCTTGCTGTaGTTTCTTTCAAACTGCACC +
Preference number: 4 (lower is better)
Translates to: GDRPMKGCGQEPLQIFNVEWILL*FLSNCT
Trigger: GGTGCAGTTTGAAAGAAAGCACAGCAAGATCCACTC...CACGTTGAAGATCTGCAGTGGTTCTTGCCCACATCCCTTCATGGGCCTATCTCC
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000026635.8
CDS-3UTR CCA 90 bp GTATTGCACTGGGTATCTGCTTCTCCACAGAAAACAACCCCACTACATCTTGTAACCACGATCTTCCTGTaGTCAGGGAACTCCAGGCCG +
Preference number: 4 (lower is better)
Translates to: VLHWVSASPQKTTPLHLVTTIFL*SGNSRP
Trigger: CGGCCTGGAGTTCCCTGACCACAGGAAGATCGTGGT...TACAAGATGTAGTGGGGTTGTTTTCTGTGGAGAAGCAGATACCCAGTGCAATAC
50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000026635.8
CDS-3UTR CCA 90 bp GGAGATAGGCCCATGAAGGGATGTGGGCAAGAACCACTGCAGATCTTCAACGTGAGGTCAATGGCCATCTaGATGTCCTCCATCCATTTT +
Preference number: 4 (lower is better)
Translates to: GDRPMKGCGQEPLQIFNVRSMAI*MSSIHF
Trigger: AAAATGGATGGAGGACATCCAGATGGCCATTGACCT...CACGTTGAAGATCTGCAGTGGTTCTTGCCCACATCCCTTCATGGGCCTATCTCC
50% GC, longest homopolymer 4 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000026635.8
CDS-3UTR TCA 90 bp AAAACAACCCCACTACATCTTGTAAATAGGAATCACAAACAGCTTGGTCAACTTCGTTCAGGAGCGGGCTaGTCAGGGGAGAGGCCTGCT +
Preference number: 4 (lower is better)
Translates to: KTTPLHLVNRNHKQLGQLRSGAG*SGERPA
Trigger: AGCAGGCCTCTCCCCTGATCAGCCCGCTCCTGAACG...AAGTTGACCAAGCTGTTTGTGATTCCTATTTACAAGATGTAGTGGGGTTGTTTT
49% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 1 transcripts:
ENSMUST00000026635.8
CDS-3UTR TCA 90 bp GTGGAATGGAGTACTCCACAAGTTGCTTATCTGAGAAAAGTTGAGTCCTACGAAACTCAGGTCATCCTCTaGCTCCTGGTCAGCCGCTGT +
Preference number: 4 (lower is better)
Translates to: VEWSTPQVAYLRKVESYETQVIL*LLVSRC
Trigger: ACAGCGGCTGACCAGGAGTCAGAGGATGACCTGAGT...TTCGTAGGACTCAACTTTTCTCAGATAAGCAACTTGTGGAGTACTCCATTCCAC
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000026635.8
CDS-3UTR CCA 90 bp GGTACAATAGATACTACTAGAGAATGTGCAGGTTCAAACCAAACCACGGCCTTGTCATCCTCTGACTCCTaGTCAGCCGCTGTGGCTTCA +
Preference number: 4 (lower is better)
Translates to: GTIDTTRECAGSNQTTALSSSDS*SAAVAS
Trigger: TGAAGCCACAGCGGCTGACCAGGAGTCAGAGGATGA...CAAGGCCGTGGTTTGGTTTGAACCTGCACATTCTCTAGTAGTATCTATTGTACC
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000026635.8
CDS-3UTR CCA 90 bp CAGAAAACAACCCCACTACATCTTGTAAATAGGAATCACAAACAGCTTGGTCAACCAGCAGAGGCAGGCTaGCAAGGGGGTGACTGTCCT +
Preference number: 4 (lower is better)
Translates to: QKTTPLHLVNRNHKQLGQPAEAG*QGGDCP
Trigger: AGGACAGTCACCCCCTTGCCAGCCTGCCTCTGCTGG...TTGACCAAGCTGTTTGTGATTCCTATTTACAAGATGTAGTGGGGTTGTTTTCTG
49% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 1 transcripts:
ENSMUST00000026635.8
CDS-3UTR GCA 90 bp ACGCCCACGTATTGCACTGGGTATCTGCTTCTCCACAGAAAACAACCCCACTACCACAGGGCAAGTCGTTaGTCAATTTCCTTCAGAAAA +
Preference number: 4 (lower is better)
Translates to: TPTYCTGYLLLHRKQPHYHRASR*SISFRK
Trigger: TTTTCTGAAGGAAATTGAGCAACGACTTGCCCTGTG...GTAGTGGGGTTGTTTTCTGTGGAGAAGCAGATACCCAGTGCAATACGTGGGCGT
48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000026635.8
CDS-3UTR CCA 90 bp GGTACAATAGATACTACTAGAGAATGTGCAGGTTCAAACCAAACCACGGCCTTGGACGTGATGCTGGGGTaGGCTTCTGCTCTATTTCTC +
Preference number: 4 (lower is better)
Translates to: GTIDTTRECAGSNQTTALDVMLG*ASALFL
Trigger: GAGAAATAGAGCAGAAGCCCACCCCAGCATCACGTC...CAAGGCCGTGGTTTGGTTTGAACCTGCACATTCTCTAGTAGTATCTATTGTACC
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000026635.8
CDS-3UTR CCA 90 bp GGTACAATAGATACTACTAGAGAATGTGCAGGTTCAAACCAAACCACGGCCTTGTCCTGGAGCTGTGTGTaGTCGGGAGGGAAGAATTTC +
Preference number: 4 (lower is better)
Translates to: GTIDTTRECAGSNQTTALSWSCV*SGGKNF
Trigger: GAAATTCTTCCCTCCCGACCACACACAGCTCCAGGA...CAAGGCCGTGGTTTGGTTTGAACCTGCACATTCTCTAGTAGTATCTATTGTACC
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000026635.8
CDS-3UTR CCA 90 bp ACGCCCACGTATTGCACTGGGTATCTGCTTCTCCACAGAAAACAACCCCACTACAGTCTGAAGAAGGCATaGTGCTCCACACATATTTTC +
Preference number: 4 (lower is better)
Translates to: TPTYCTGYLLLHRKQPHYSLKKA*CSTHIF
Trigger: GAAAATATGTGTGGAGCACCATGCCTTCTTCAGACT...GTAGTGGGGTTGTTTTCTGTGGAGAAGCAGATACCCAGTGCAATACGTGGGCGT
48% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 1 transcripts:
ENSMUST00000026635.8
CDS-3UTR CCA 90 bp GTGGAATGGAGTACTCCACAAGTTGCTTATCTGAGAAAAGTTGAGTCCTACGAAAGACCAGGCTCCTGGTaGAGTGGATCTTGCTGTGCT +
Preference number: 4 (lower is better)
Translates to: VEWSTPQVAYLRKVESYERPGSW*SGSCCA
Trigger: AGCACAGCAAGATCCACTCCACCAGGAGCCTGGTCT...TTCGTAGGACTCAACTTTTCTCAGATAAGCAACTTGTGGAGTACTCCATTCCAC
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000026635.8
CDS-3UTR CCA 90 bp AAAGACTTGGAGACAGGTACAATAGATACTACTAGAGAATGTGCAGGTTCAAACTGCAGCTTTGCTCCCTaGAGGGCTCTTAGGGAGGGC +
Preference number: 4 (lower is better)
Translates to: KDLETGTIDTTRECAGSNCSFAP*RALREG
Trigger: GCCCTCCCTAAGAGCCCTCCAGGGAGCAAAGCTGCA...GTTTGAACCTGCACATTCTCTAGTAGTATCTATTGTACCTGTCTCCAAGTCTTT
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000026635.8
CDS-3UTR TCA 90 bp GTATTGCACTGGGTATCTGCTTCTCCACAGAAAACAACCCCACTACATCTTGTACCGTGGACTTTAAACTaGTTAGATGCCGTCAGTCCC +
Preference number: 4 (lower is better)
Translates to: VLHWVSASPQKTTPLHLVPWTLN*LDAVSP
Trigger: GGGACTGACGGCATCTAATCAGTTTAAAGTCCACGG...TACAAGATGTAGTGGGGTTGTTTTCTGTGGAGAAGCAGATACCCAGTGCAATAC
47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000026635.8
CDS-3UTR GCA 90 bp GTGGAATGGAGTACTCCACAAGTTGCTTATCTGAGAAAAGTTGAGTCCTACGAATTTTCCAGAAAGACTTaGAGAAGTCTCGGCCGGCCA +
Preference number: 4 (lower is better)
Translates to: VEWSTPQVAYLRKVESYEFSRKT*RSLGRP
Trigger: TGGCCGGCCGAGACTTCTGCAAGTCTTTCTGGAAAA...TTCGTAGGACTCAACTTTTCTCAGATAAGCAACTTGTGGAGTACTCCATTCCAC
46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000026635.8
CDS-3UTR GCA 90 bp GGTACAATAGATACTACTAGAGAATGTGCAGGTTCAAACCAAACCACGGCCTTGTGCTTTCTTTCAAACTaGACCTTCTTGTGGCCGCCT +
Preference number: 4 (lower is better)
Translates to: GTIDTTRECAGSNQTTALCFLSN*TFLWPP
Trigger: AGGCGGCCACAAGAAGGTGCAGTTTGAAAGAAAGCA...CAAGGCCGTGGTTTGGTTTGAACCTGCACATTCTCTAGTAGTATCTATTGTACC
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000026635.8
CDS-3UTR GCA 90 bp CAGAAAACAACCCCACTACATCTTGTAAATAGGAATCACAAACAGCTTGGTCAATTTGTTTCCTTCGCTTaGTGGCAGCTCTGGCCACCC +
Preference number: 4 (lower is better)
Translates to: QKTTPLHLVNRNHKQLGQFVSFA*WQLWPP
Trigger: GGGTGGCCAGAGCTGCCAGCAAGCGAAGGAAACAAA...TTGACCAAGCTGTTTGTGATTCCTATTTACAAGATGTAGTGGGGTTGTTTTCTG
46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000026635.8
CDS-3UTR GCA 90 bp AGCTGCCCTAGAGAACAGGCAAACAGTTTTCCACTGGGAGGCTCAGGTAGTGTTTTGGTATGGAACTTGTaGAAAGGTTCAAAATTTGGG +
Preference number: 4 (lower is better)
Translates to: SCPREQANSFPLGGSGSVLVWNL*KGSKFG
Trigger: CCCAAATTTTGAACCTTTGCACAAGTTCCATACCAA...AACACTACCTGAGCCTCCCAGTGGAAAACTGTTTGCCTGTTCTCTAGGGCAGCT
46% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 1 transcripts:
ENSMUST00000026635.8
CDS-3UTR CCA 90 bp AAAGACTTGGAGACAGGTACAATAGATACTACTAGAGAATGTGCAGGTTCAAACTGCCTTCCCTGTCCTTaGCAGGGTGTAACCGGATTC +
Preference number: 4 (lower is better)
Translates to: KDLETGTIDTTRECAGSNCLPCP*QGVTGF
Trigger: GAATCCGGTTACACCCTGCCAAGGACAGGGAAGGCA...GTTTGAACCTGCACATTCTCTAGTAGTATCTATTGTACCTGTCTCCAAGTCTTT
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000026635.8
CDS-3UTR CCA 90 bp GTATTGCACTGGGTATCTGCTTCTCCACAGAAAACAACCCCACTACATCTTGTAGAAGAGAACAGGCTTTaGCTTTGGCTTAGGTTCTTC +
Preference number: 4 (lower is better)
Translates to: VLHWVSASPQKTTPLHLVEENRL*LWLRFF
Trigger: GAAGAACCTAAGCCAAAGCCAAAGCCTGTTCTCTTC...TACAAGATGTAGTGGGGTTGTTTTCTGTGGAGAAGCAGATACCCAGTGCAATAC
44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000026635.8
CDS-3UTR CCA 90 bp AAAACAACCCCACTACATCTTGTAAATAGGAATCACAAACAGCTTGGTCAACTTTGTCAGGACTCAGGTTaGGAGACAGGGTCACGTTGG +
Preference number: 4 (lower is better)
Translates to: KTTPLHLVNRNHKQLGQLCQDSG*ETGSRW
Trigger: CCAACGTGACCCTGTCTCCCAACCTGAGTCCTGACA...AAGTTGACCAAGCTGTTTGTGATTCCTATTTACAAGATGTAGTGGGGTTGTTTT
44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000026635.8
CDS-3UTR TCA 90 bp GTATTGCACTGGGTATCTGCTTCTCCACAGAAAACAACCCCACTACATCTTGTAGTGTCGTCCAGCATCTaGATTTTGACAGTCATAAGT +
Preference number: 4 (lower is better)
Translates to: VLHWVSASPQKTTPLHLVVSSSI*ILTVIS
Trigger: ACTTATGACTGTCAAAATTCAGATGCTGGACGACAC...TACAAGATGTAGTGGGGTTGTTTTCTGTGGAGAAGCAGATACCCAGTGCAATAC
43% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 1 transcripts:
ENSMUST00000026635.8
CDS-3UTR TCA 90 bp CAGAAAACAACCCCACTACATCTTGTAAATAGGAATCACAAACAGCTTGGTCAACAAGGTGTCCTGGTATaGGCTATTCACGTCAGGTCT +
Preference number: 4 (lower is better)
Translates to: QKTTPLHLVNRNHKQLGQQGVLV*AIHVRS
Trigger: AGACCTGACGTGAATAGCTCATACCAGGACACCTTG...TTGACCAAGCTGTTTGTGATTCCTATTTACAAGATGTAGTGGGGTTGTTTTCTG
43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000026635.8
CDS-3UTR TCA 90 bp GGTACAATAGATACTACTAGAGAATGTGCAGGTTCAAACCAAACCACGGCCTTGCAAAATTTGGGAATATaGGACTCTTCAAGGCTTCGG +
Preference number: 4 (lower is better)
Translates to: GTIDTTRECAGSNQTTALQNLGI*DSSRLR
Trigger: CCGAAGCCTTGAAGAGTCTCATATTCCCAAATTTTG...CAAGGCCGTGGTTTGGTTTGAACCTGCACATTCTCTAGTAGTATCTATTGTACC
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000026635.8
CDS-3UTR TCA 90 bp GTGGAATGGAGTACTCCACAAGTTGCTTATCTGAGAAAAGTTGAGTCCTACGAAAGCCATTGCTGTTCTTaGACTTTCTCAGCAAGTTCC +
Preference number: 4 (lower is better)
Translates to: VEWSTPQVAYLRKVESYESHCCS*TFSASS
Trigger: GGAACTTGCTGAGAAAGTTCAAGAACAGCAATGGCT...TTCGTAGGACTCAACTTTTCTCAGATAAGCAACTTGTGGAGTACTCCATTCCAC
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000026635.8
CDS-3UTR CCA 90 bp AAAACAACCCCACTACATCTTGTAAATAGGAATCACAAACAGCTTGGTCAACTTCTGGTAAGTTCTTCCTaGAGCTGTGTGTGGTCGGGA +
Preference number: 4 (lower is better)
Translates to: KTTPLHLVNRNHKQLGQLLVSSS*SCVWSG
Trigger: TCCCGACCACACACAGCTCCAGGAAGAACTTACCAG...AAGTTGACCAAGCTGTTTGTGATTCCTATTTACAAGATGTAGTGGGGTTGTTTT
43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000026635.8
CDS-3UTR TCA 90 bp AAAGACTTGGAGACAGGTACAATAGATACTACTAGAGAATGTGCAGGTTCAAACAGTCATAAGTTTTCCTaGAGGTGTGGGCGGTGGTTT +
Preference number: 4 (lower is better)
Translates to: KDLETGTIDTTRECAGSNSHKFS*RCGRWF
Trigger: AAACCACCGCCCACACCTTCAGGAAAACTTATGACT...GTTTGAACCTGCACATTCTCTAGTAGTATCTATTGTACCTGTCTCCAAGTCTTT
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000026635.8
CDS-3UTR GCA 90 bp AAAGACTTGGAGACAGGTACAATAGATACTACTAGAGAATGTGCAGGTTCAAACTTTAAACTGATTAGATaGCGTCAGTCCCCGGCTGGT +
Preference number: 4 (lower is better)
Translates to: KDLETGTIDTTRECAGSNFKLIR*RQSPAG
Trigger: ACCAGCCGGGGACTGACGGCATCTAATCAGTTTAAA...GTTTGAACCTGCACATTCTCTAGTAGTATCTATTGTACCTGTCTCCAAGTCTTT
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000026635.8
CDS-3UTR CCA 90 bp AAAACAACCCCACTACATCTTGTAAATAGGAATCACAAACAGCTTGGTCAACTTGAATCTGCTTCACAATaGGCTTCAGGAGATCCAGCC +
Preference number: 4 (lower is better)
Translates to: KTTPLHLVNRNHKQLGQLESASQ*ASGDPA
Trigger: GGCTGGATCTCCTGAAGCCCATTGTGAAGCAGATTC...AAGTTGACCAAGCTGTTTGTGATTCCTATTTACAAGATGTAGTGGGGTTGTTTT
42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000026635.8
CDS-3UTR CCA 90 bp AAAACAACCCCACTACATCTTGTAAATAGGAATCACAAACAGCTTGGTCAACTTAAGGCTTGCGCTCTGTaGAGACTGTTTTGGCACTTC +
Preference number: 4 (lower is better)
Translates to: KTTPLHLVNRNHKQLGQLKACAL*RLFWHF
Trigger: GAAGTGCCAAAACAGTCTCCACAGAGCGCAAGCCTT...AAGTTGACCAAGCTGTTTGTGATTCCTATTTACAAGATGTAGTGGGGTTGTTTT
42% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 1 transcripts:
ENSMUST00000026635.8
CDS-3UTR TCA 90 bp AAAACAACCCCACTACATCTTGTAAATAGGAATCACAAACAGCTTGGTCAACTTGTGACTGTCCTGGTGTaGTTTGTAGAAGAACAGGCA +
Preference number: 4 (lower is better)
Translates to: KTTPLHLVNRNHKQLGQLVTVLV*FVEEQA
Trigger: TGCCTGTTCTTCTACAAATCACACCAGGACAGTCAC...AAGTTGACCAAGCTGTTTGTGATTCCTATTTACAAGATGTAGTGGGGTTGTTTT
41% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000026635.8
CDS-3UTR GCA 90 bp AAAACAACCCCACTACATCTTGTAAATAGGAATCACAAACAGCTTGGTCAACTTTTGATCATGGTACCATaGAGCTGTGCCACCATCTCT +
Preference number: 4 (lower is better)
Translates to: KTTPLHLVNRNHKQLGQLLIMVP*SCATIS
Trigger: AGAGATGGTGGCACAGCTGCATGGTACCATGATCAA...AAGTTGACCAAGCTGTTTGTGATTCCTATTTACAAGATGTAGTGGGGTTGTTTT
41% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 1 transcripts:
ENSMUST00000026635.8
CDS-3UTR CCA 90 bp CAGAAAACAACCCCACTACATCTTGTAAATAGGAATCACAAACAGCTTGGTCAAGATGAACTCCCTTCCTaGGGTCACAAGATTGTCAAT +
Preference number: 4 (lower is better)
Translates to: QKTTPLHLVNRNHKQLGQDELPS*GHKIVN
Trigger: ATTGACAATCTTGTGACCCCAGGAAGGGAGTTCATC...TTGACCAAGCTGTTTGTGATTCCTATTTACAAGATGTAGTGGGGTTGTTTTCTG
41% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000026635.8
CDS-3UTR CCA 90 bp AAAACAACCCCACTACATCTTGTAAATAGGAATCACAAACAGCTTGGTCAACTTAACTCCAAGGTGTCCTaGTATGAGCTATTCACGTCA +
Preference number: 4 (lower is better)
Translates to: KTTPLHLVNRNHKQLGQLNSKVS*YELFTS
Trigger: TGACGTGAATAGCTCATACCAGGACACCTTGGAGTT...AAGTTGACCAAGCTGTTTGTGATTCCTATTTACAAGATGTAGTGGGGTTGTTTT
40% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000026635.8
CDS-3UTR CAA 90 bp GACACCGCCCTCCCACCCCCTAGGCCTGGAGGGAAAGGCTGTCCAAAGAGGTTGGGCCGGATGCCGTCCTaGCCACCCTCTTCCTCCTCT +
Preference number: 5 (lower is better)
Translates to: DTALPPPRPGGKGCPKRLGRMPS*PPSSSS
Trigger: AGAGGAGGAAGAGGGTGGCAAGGACGGCATCCGGCC...CAACCTCTTTGGACAGCCTTTCCCTCCAGGCCTAGGGGGTGGGAGGGCGGTGTC
66% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000026635.8
CDS-3UTR CAA 90 bp ACTAAAGCGCCCCTGGAGAATGGCAAGACACCGCCCTCCCACCCCCTAGGCCTGTCGCCCTCCACAAGGTaGAGGTGGTTGCACACGGCG +
Preference number: 5 (lower is better)
Translates to: TKAPLENGKTPPSHPLGLSPSTR*RWLHTA
Trigger: CGCCGTGTGCAACCACCTCAACCTTGTGGAGGGCGA...CAGGCCTAGGGGGTGGGAGGGCGGTGTCTTGCCATTCTCCAGGGGCGCTTTAGT
64% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000026635.8
CDS TCA 90 bp GGCCTGGCGCTCCAGCGATGTCCGAGAGGCACTCAGGTCATCCTCTaGCTCCTGGTCAGCCGCTGTGGCTTCATCCGGGGACTTGTTGTC +
Preference number: 5 (lower is better)
Translates to: GLALQRCPRGTQVIL*LLVSRCGFIRGLVV
Trigger: GACAACAAGTCCCCGGATGAAGCCACAGCGGCTGACCAGGAGTCAGAGGATGACCTGAGTGCCTCTCGGACATCGCTGGAGCGCCAGGCC
63% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000026635.8
CDS CCA 90 bp TTCCTCAGGCGGCACCACGGTGGTTCCATCTGCAGCTTTGCTCCCTaGAGGGCTCTTAGGGAGGGCGGGGCTTTGGTGAGGTCCCAACTC +
Preference number: 5 (lower is better)
Translates to: FLRRHHGGSICSFAP*RALREGGALVRSQL
Trigger: GAGTTGGGACCTCACCAAAGCCCCGCCCTCCCTAAGAGCCCTCCAGGGAGCAAAGCTGCAGATGGAACCACCGTGGTGCCGCCTGAGGAA
63% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000026635.8
CDS CCA 90 bp CTCTTTCGCCGGCCCTCTTCTTCGTCGTCGGTCCTTGGGCACGCTTaGTCGTTCAGGAGCGGGCTGATCAGGGGAGAGGCCTGCTTGTTG +
Preference number: 5 (lower is better)
Translates to: LFRRPSSSSSVLGHA*SFRSGLIRGEACLL
Trigger: CAACAAGCAGGCCTCTCCCCTGATCAGCCCGCTCCTGAACGACCAAGCGTGCCCAAGGACCGACGACGAAGAAGAGGGCCGGCGAAAGAG
63% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000026635.8
CDS CCA 90 bp GGTTGGGAATCTCTTTCGCCGGCCCTCTTCTTCGTCGTCGGTCCTTaGGCACGCTTGGTCGTTCAGGAGCGGGCTGATCAGGGGAGAGGC +
Preference number: 5 (lower is better)
Translates to: GWESLSPALFFVVGP*ARLVVQERADQGRG
Trigger: GCCTCTCCCCTGATCAGCCCGCTCCTGAACGACCAAGCGTGCCCAAGGACCGACGACGAAGAAGAGGGCCGGCGAAAGAGATTCCCAACC
63% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000026635.8
CDS TCA 90 bp CTTCGTCGTCGGTCCTTGGGCACGCTTGGTCGTTCAGGAGCGGGCTaGTCAGGGGAGAGGCCTGCTTGTTGTCAGGACTCAGGTTGGGAG +
Preference number: 5 (lower is better)
Translates to: LRRRSLGTLGRSGAG*SGERPACCQDSGWE
Trigger: CTCCCAACCTGAGTCCTGACAACAAGCAGGCCTCTCCCCTGATCAGCCCGCTCCTGAACGACCAAGCGTGCCCAAGGACCGACGACGAAG
62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000026635.8
CDS GCA 90 bp CTCTTCCTCCTCTTCTTCCTCAGGCGGCACCACGGTGGTTCCATCTaGAGCTTTGCTCCCTGGAGGGCTCTTAGGGAGGGCGGGGCTTTG +
Preference number: 5 (lower is better)
Translates to: LFLLFFLRRHHGGSI*SFAPWRALREGGAL
Trigger: CAAAGCCCCGCCCTCCCTAAGAGCCCTCCAGGGAGCAAAGCTGCAGATGGAACCACCGTGGTGCCGCCTGAGGAAGAAGAGGAGGAAGAG
62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000026635.8
CDS GCA 90 bp GGGCACGCTTGGTCGTTCAGGAGCGGGCTGATCAGGGGAGAGGCCTaGTTGTTGTCAGGACTCAGGTTGGGAGACAGGGTCACGTTGGCT +
Preference number: 5 (lower is better)
Translates to: GHAWSFRSGLIRGEA*LLSGLRLGDRVTLA
Trigger: AGCCAACGTGACCCTGTCTCCCAACCTGAGTCCTGACAACAAGCAGGCCTCTCCCCTGATCAGCCCGCTCCTGAACGACCAAGCGTGCCC
62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000026635.8
CDS-3UTR CAA 90 bp ACTAAAGCGCCCCTGGAGAATGGCAAGACACCGCCCTCCCACCCCCTAGGCCTGTTGGCGACAGCCAGGTaGATCTTGGTGCCTTCCCTG +
Preference number: 5 (lower is better)
Translates to: TKAPLENGKTPPSHPLGLLATAR*ILVPSL
Trigger: CAGGGAAGGCACCAAGATCAACCTGGCTGTCGCCAA...CAGGCCTAGGGGGTGGGAGGGCGGTGTCTTGCCATTCTCCAGGGGCGCTTTAGT
62% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000026635.8
CDS-3UTR CAA 90 bp ACTAAAGCGCCCCTGGAGAATGGCAAGACACCGCCCTCCCACCCCCTAGGCCTGGGAGAGGCCTGCTTGTaGTCAGGACTCAGGTTGGGA +
Preference number: 5 (lower is better)
Translates to: TKAPLENGKTPPSHPLGLGEACL*SGLRLG
Trigger: TCCCAACCTGAGTCCTGACAACAAGCAGGCCTCTCC...CAGGCCTAGGGGGTGGGAGGGCGGTGTCTTGCCATTCTCCAGGGGCGCTTTAGT
62% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000026635.8
CDS-3UTR CAA 90 bp GGCAAGACACCGCCCTCCCACCCCCTAGGCCTGGAGGGAAAGGCTGTCCAAAGAAGGGGAGAGGCCTGCTaGTTGTCAGGACTCAGGTTG +
Preference number: 5 (lower is better)
Translates to: GKTPPSHPLGLEGKAVQRRGEAC*LSGLRL
Trigger: CAACCTGAGTCCTGACAACAAGCAGGCCTCTCCCCT...TCTTTGGACAGCCTTTCCCTCCAGGCCTAGGGGGTGGGAGGGCGGTGTCTTGCC
62% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000026635.8
CDS TCA 90 bp TGTGGTCAGGGAACTCCAGGCCGAAGTAGTCGCCCTCCACAAGGTTaGGGTGGTTGCACACGGCGTCAAACAGAACCTTCCCTGGCGCTC +
Preference number: 5 (lower is better)
Translates to: CGQGTPGRSSRPPQG*GGCTRRQTEPSLAL
Trigger: GAGCGCCAGGGAAGGTTCTGTTTGACGCCGTGTGCAACCACCTCAACCTTGTGGAGGGCGACTACTTCGGCCTGGAGTTCCCTGACCACA
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000026635.8
ENSMUST00000135010.8
CDS-3UTR CAA 90 bp AACAGTTTTCCACTGGGAGGCTCAGGTAGTGTTTGGCAGCCAGGTCCCCCAGAGAGGGAGGGCGGGGCTTaGGTGAGGTCCCAACTCCAA +
Preference number: 5 (lower is better)
Translates to: NSFPLGGSGSVWQPGPPEREGGA*VRSQLQ
Trigger: TTGGAGTTGGGACCTCACCAAAGCCCCGCCCTCCCT...CTCTGGGGGACCTGGCTGCCAAACACTACCTGAGCCTCCCAGTGGAAAACTGTT
60% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 1 transcripts:
ENSMUST00000026635.8
CDS-3UTR CAA 90 bp AGCTGCCCTAGAGAACAGGCAAACAGTTTTCCACTGGGAGGCTCAGGTAGTGTTGGAGACAGGGTCACGTaGGCTGGGGCGGCTCCTCCC +
Preference number: 5 (lower is better)
Translates to: SCPREQANSFPLGGSGSVGDRVT*AGAAPP
Trigger: GGGAGGAGCCGCCCCAGCCAACGTGACCCTGTCTCC...AACACTACCTGAGCCTCCCAGTGGAAAACTGTTTGCCTGTTCTCTAGGGCAGCT
60% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000026635.8
CDS TCA 90 bp GCAGCTTTGCTCCCTGGAGGGCTCTTAGGGAGGGCGGGGCTTTGGTaGGGTCCCAACTCCAAGGTACAGGCTTTTGTTTCCTTCGCTTGC +
Preference number: 5 (lower is better)
Translates to: AALLPGGLLGRAGLW*GPNSKVQAFVSFAC
Trigger: GCAAGCGAAGGAAACAAAAGCCTGTACCTTGGAGTTGGGACCTCACCAAAGCCCCGCCCTCCCTAAGAGCCCTCCAGGGAGCAAAGCTGC
59% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000026635.8
CDS CCA 90 bp AACCGGATTCCGTACATCTCTAGCCGACGGGCCACCTCTAGGAGCTaGAAATCTGACTCTGCCGGGGTTTGTCCAACGTGGCTGTGGTGG +
Preference number: 5 (lower is better)
Translates to: NRIPYISSRRATSRS*KSDSAGVCPTWLWW
Trigger: CCACCACAGCCACGTTGGACAAACCCCGGCAGAGTCAGATTTCCAGCTCCTAGAGGTGGCCCGTCGGCTAGAGATGTACGGAATCCGGTT
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000026635.8
CDS-3UTR CAA 90 bp TTCCGCCAAGAAAGTAGGTGTGGCGACCAGGGTCTCGCTGGAGCCCACCCCTTCATTTTCCAGAAAGACTaGCAGAAGTCTCGGCCGGCC +
Preference number: 5 (lower is better)
Translates to: FRQESRCGDQGLAGAHPFIFQKD*QKSRPA
Trigger: GGCCGGCCGAGACTTCTGCAAGTCTTTCTGGAAAAT...GAAGGGGTGGGCTCCAGCGAGACCCTGGTCGCCACACCTACTTTCTTGGCGGAA
59% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000026635.8
CDS-3UTR CAA 90 bp GACCCAGCTGCCCTAGAGAACAGGCAAACAGTTTTCCACTGGGAGGCTCAGGTAAGCCACGATGATAGATaGCCGCTGGCCCCGCAGGGT +
Preference number: 5 (lower is better)
Translates to: DPAALENRQTVFHWEAQVSHDDR*PLAPQG
Trigger: ACCCTGCGGGGCCAGCGGCAATCTATCATCGTGGCT...TACCTGAGCCTCCCAGTGGAAAACTGTTTGCCTGTTCTCTAGGGCAGCTGGGTC
59% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000026635.8
CDS-3UTR CAA 90 bp TGTGGCGACCAGGGTCTCGCTGGAGCCCACCCCTTCGGTGGAATGGAGTACTCCTGGAAGTTCTCCATCTaGATCATGGTACCATGCAGC +
Preference number: 5 (lower is better)
Translates to: CGDQGLAGAHPFGGMEYSWKFSI*IMVPCS
Trigger: GCTGCATGGTACCATGATCAAGATGGAGAACTTCCA...GGAGTACTCCATTCCACCGAAGGGGTGGGCTCCAGCGAGACCCTGGTCGCCACA
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000026635.8
CDS-3UTR CAA 90 bp CAGCGACCCAGCTGCCCTAGAGAACAGGCAAACAGTTTTCCACTGGGAGGCTCATCGGGGGTGGGTCCATaGCTTTTCTCTGCCAGGTCA +
Preference number: 5 (lower is better)
Translates to: QRPSCPREQANSFPLGGSSGVGP*LFSARS
Trigger: TGACCTGGCAGAGAAAAGCAATGGACCCACCCCCGA...TGAGCCTCCCAGTGGAAAACTGTTTGCCTGTTCTCTAGGGCAGCTGGGTCGCTG
58% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 1 transcripts:
ENSMUST00000026635.8
CDS TCA 90 bp GAGATCAAGAGAGCGGCACTGGTGTCGTTACACGTCAGCCTGCCTTaGGCCAAGTCCTGCTTCACCTGCAGAGCGAACAGGTACCTGGTA +
Preference number: 5 (lower is better)
Translates to: EIKRAALVSLHVSLP*AKSCFTCRANRYLV
Trigger: TACCAGGTACCTGTTCGCTCTGCAGGTGAAGCAGGACTTGGCTCAAGGCAGGCTGACGTGTAACGACACCAGTGCCGCTCTCTTGATCTC
57% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000026635.8
ENSMUST00000135010.8
CDS GCA 90 bp TGTGTGAGATCAAGAGAGCGGCACTGGTGTCGTTACACGTCAGCCTaGCTTGAGCCAAGTCCTGCTTCACCTGCAGAGCGAACAGGTACC +
Preference number: 5 (lower is better)
Translates to: CVRSRERHWCRYTSA*LEPSPASPAERTGT
Trigger: GGTACCTGTTCGCTCTGCAGGTGAAGCAGGACTTGGCTCAAGGCAGGCTGACGTGTAACGACACCAGTGCCGCTCTCTTGATCTCACACA
57% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000026635.8
ENSMUST00000135010.8
CDS-3UTR CAA 90 bp GACCCAGCTGCCCTAGAGAACAGGCAAACAGTTTTCCACTGGGAGGCTCAGGTAGTGCCTTCCCTGTCCTaGGCAGGGTGTAACCGGATT +
Preference number: 5 (lower is better)
Translates to: DPAALENRQTVFHWEAQVVPSLS*AGCNRI
Trigger: AATCCGGTTACACCCTGCCAAGGACAGGGAAGGCAC...TACCTGAGCCTCCCAGTGGAAAACTGTTTGCCTGTTCTCTAGGGCAGCTGGGTC
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000026635.8
CDS-3UTR CAA 90 bp AACAGTTTTCCACTGGGAGGCTCAGGTAGTGTTTGGCAGCCAGGTCCCCCAGAGTTTTGTTTCCTTCGCTaGCTGGCAGCTCTGGCCACC +
Preference number: 5 (lower is better)
Translates to: NSFPLGGSGSVWQPGPPEFCFLR*LAALAT
Trigger: GGTGGCCAGAGCTGCCAGCAAGCGAAGGAAACAAAA...CTCTGGGGGACCTGGCTGCCAAACACTACCTGAGCCTCCCAGTGGAAAACTGTT
57% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 1 transcripts:
ENSMUST00000026635.8
CDS-3UTR CAA 90 bp GCTGGAGCCCACCCCTTCGGTGGAATGGAGTACTCCACAAGTTGCTTATCTGAGTTTGGTGGGTGGTGCTaGCACAGCCTCTCCAGGACA +
Preference number: 5 (lower is better)
Translates to: AGAHPFGGMEYSTSCLSEFGGWC*HSLSRT
Trigger: TGTCCTGGAGAGGCTGTGCAAGCACCACCCACCAAA...CTCAGATAAGCAACTTGTGGAGTACTCCATTCCACCGAAGGGGTGGGCTCCAGC
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000026635.8
CDS GCA 90 bp CAGCTTCTGGAAGTTCTCCATCTTGATCATGGTACCATGCAGCTGTaGCACCATCTCTGTGATCTCCGCCAGCGCAGCTCTGCAGTCCCT +
Preference number: 5 (lower is better)
Translates to: QLLEVLHLDHGTMQL*HHLCDLRQRSSAVP
Trigger: AGGGACTGCAGAGCTGCGCTGGCGGAGATCACAGAGATGGTGGCACAGCTGCATGGTACCATGATCAAGATGGAGAACTTCCAGAAGCTG
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000026635.8
CDS CCA 90 bp TTGCGCTCTGTGGAGACTGTTTTGGCACTTCTGAATTCGGTGCTGTaGGCTGTGAGACCAGGCTCCTGGTGGAGTGGATCTTGCTGTGCT +
Preference number: 5 (lower is better)
Translates to: LRSVETVLALLNSVL*AVRPGSWWSGSCCA
Trigger: AGCACAGCAAGATCCACTCCACCAGGAGCCTGGTCTCACAGCCCACAGCACCGAATTCAGAAGTGCCAAAACAGTCTCCACAGAGCGCAA
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000026635.8
CDS CCA 90 bp AACTCCAAGGTACAGGCTTTTGTTTCCTTCGCTTGCTGGCAGCTCTaGCCACCCGGAGACTCGGTACCTTCTCCAAACGTAAGGCTTGCG +
Preference number: 5 (lower is better)
Translates to: NSKVQAFVSFACWQL*PPGDSVPSPNVRLA
Trigger: CGCAAGCCTTACGTTTGGAGAAGGTACCGAGTCTCCGGGTGGCCAGAGCTGCCAGCAAGCGAAGGAAACAAAAGCCTGTACCTTGGAGTT
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000026635.8
CDS CCA 90 bp CTCTGTGGTGGAGACTTCCTTAGCAATGTAGTACGCCTTGTCGGTTaGGAATCTCTTTCGCCGGCCCTCTTCTTCGTCGTCGGTCCTTGG +
Preference number: 5 (lower is better)
Translates to: LCGGDFLSNVVRLVG*ESLSPALFFVVGPW
Trigger: CCAAGGACCGACGACGAAGAAGAGGGCCGGCGAAAGAGATTCCCAACCGACAAGGCGTACTACATTGCTAAGGAAGTCTCCACCACAGAG
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000026635.8
CDS-3UTR CAA 90 bp AACAGTTTTCCACTGGGAGGCTCAGGTAGTGTTTGGCAGCCAGGTCCCCCAGAGCTCAGCTTCCGCACCTaGGCCCAGTTAAAAGCATTG +
Preference number: 5 (lower is better)
Translates to: NSFPLGGSGSVWQPGPPELSFRT*AQLKAL
Trigger: CAATGCTTTTAACTGGGCCAAGGTGCGGAAGCTGAG...CTCTGGGGGACCTGGCTGCCAAACACTACCTGAGCCTCCCAGTGGAAAACTGTT
56% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 1 transcripts:
ENSMUST00000026635.8
CDS-3UTR CAA 90 bp AACAGTTTTCCACTGGGAGGCTCAGGTAGTGTTTGGCAGCCAGGTCCCCCAGAGCCAAGGTACAGGCTTTaGTTTCCTTCGCTTGCTGGC +
Preference number: 5 (lower is better)
Translates to: NSFPLGGSGSVWQPGPPEPRYRL*FPSLAG
Trigger: GCCAGCAAGCGAAGGAAACAAAAGCCTGTACCTTGG...CTCTGGGGGACCTGGCTGCCAAACACTACCTGAGCCTCCCAGTGGAAAACTGTT
56% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000026635.8
CDS-3UTR CAA 90 bp GACCCAGCTGCCCTAGAGAACAGGCAAACAGTTTTCCACTGGGAGGCTCAGGTAGTTCCATCTGCAGCTTaGCTCCCTGGAGGGCTCTTA +
Preference number: 5 (lower is better)
Translates to: DPAALENRQTVFHWEAQVVPSAA*LPGGLL
Trigger: TAAGAGCCCTCCAGGGAGCAAAGCTGCAGATGGAAC...TACCTGAGCCTCCCAGTGGAAAACTGTTTGCCTGTTCTCTAGGGCAGCTGGGTC
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000026635.8
CDS TCA 90 bp CTCTTCAAGGCTTCGGGCATGGAGTCCTCTTTGCTGACTGTGCTCTaGAACCACGAAGCAATGACCTCAAGGTCCTTCAGGTACGTGCGC +
Preference number: 5 (lower is better)
Translates to: LFKASGMESSLLTVL*NHEAMTSRSFRYVR
Trigger: GCGCACGTACCTGAAGGACCTTGAGGTCATTGCTTCGTGGTTTCAGAGCACAGTCAGCAAAGAGGACTCCATGCCCGAAGCCTTGAAGAG
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000026635.8
CDS TCA 90 bp ACTTTCTCAGCAAGTTCCCAGAGAGCTGGTTCTCCACAGCAATGCTaGAGTCCACCATGGAGACACTGGTGCTGCGATGCCAGCACACGT +
Preference number: 5 (lower is better)
Translates to: TFSASSQRAGSPQQC*SPPWRHWCCDASTR
Trigger: ACGTGTGCTGGCATCGCAGCACCAGTGTCTCCATGGTGGACTTCAGCATTGCTGTGGAGAACCAGCTCTCTGGGAACTTGCTGAGAAAGT
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000026635.8
CDS CCA 90 bp CCCCAATCTCCGACTGTACAATGTGTGAGATCAAGAGAGCGGCACTaGTGTCGTTACACGTCAGCCTGCCTTGAGCCAAGTCCTGCTTCA +
Preference number: 5 (lower is better)
Translates to: PQSPTVQCVRSRERH*CRYTSACLEPSPAS
Trigger: TGAAGCAGGACTTGGCTCAAGGCAGGCTGACGTGTAACGACACCAGTGCCGCTCTCTTGATCTCACACATTGTACAGTCGGAGATTGGGG
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000026635.8
ENSMUST00000135010.8
CDS CCA 90 bp ACCTCTAGGAGCTGGAAATCTGACTCTGCCGGGGTTTGTCCAACGTaGCTGTGGTGGAACTCCATGATTCTGTCTTCCAGCGCATCCTGT +
Preference number: 5 (lower is better)
Translates to: TSRSWKSDSAGVCPT*LWWNSMILSSSASC
Trigger: ACAGGATGCGCTGGAAGACAGAATCATGGAGTTCCACCACAGCCACGTTGGACAAACCCCGGCAGAGTCAGATTTCCAGCTCCTAGAGGT
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000026635.8
CDS CCA 90 bp TCTGAATTCGGTGCTGTGGGCTGTGAGACCAGGCTCCTGGTGGAGTaGATCTTGCTGTGCTTTCTTTCAAACTGCACCTTCTTGTGGCCG +
Preference number: 5 (lower is better)
Translates to: SEFGAVGCETRLLVE*ILLCFLSNCTFLWP
Trigger: CGGCCACAAGAAGGTGCAGTTTGAAAGAAAGCACAGCAAGATCCACTCCACCAGGAGCCTGGTCTCACAGCCCACAGCACCGAATTCAGA
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000026635.8
CDS CCA 90 bp CACACCCCACTCCTCCTCACTCTCCTCGATCGTCATGCCATAGAGTaGGAGCTGTCCGTGGACTTTAAACTGATTAGATGCCGTCAGTCC +
Preference number: 5 (lower is better)
Translates to: HTPLLLTLLDRHAIE*ELSVDFKLIRCRQS
Trigger: GGACTGACGGCATCTAATCAGTTTAAAGTCCACGGACAGCTCCCACTCTATGGCATGACGATCGAGGAGAGTGAGGAGGAGTGGGGTGTG
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000026635.8
CDS-3UTR CAA 90 bp AACAGTTTTCCACTGGGAGGCTCAGGTAGTGTTTGGCAGCCAGGTCCCCCAGAGACTAGAATTCCAGTGTaGGCGACAGCCAGGTTGATC +
Preference number: 5 (lower is better)
Translates to: NSFPLGGSGSVWQPGPPETRIPV*ATARLI
Trigger: GATCAACCTGGCTGTCGCCAACACTGGAATTCTAGT...CTCTGGGGGACCTGGCTGCCAAACACTACCTGAGCCTCCCAGTGGAAAACTGTT
54% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000026635.8
CDS-3UTR CAA 90 bp GACCCAGCTGCCCTAGAGAACAGGCAAACAGTTTTCCACTGGGAGGCTCAGGTAACGTCAGGTCTGAGCTaGATAAGAAAGCGCTTCCGC +
Preference number: 5 (lower is better)
Translates to: DPAALENRQTVFHWEAQVTSGLS*IRKRFR
Trigger: GCGGAAGCGCTTTCTTATCAAGCTCAGACCTGACGT...TACCTGAGCCTCCCAGTGGAAAACTGTTTGCCTGTTCTCTAGGGCAGCTGGGTC
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000026635.8
CDS GCA 90 bp GCTGTGGGCTGTGAGACCAGGCTCCTGGTGGAGTGGATCTTGCTGTaGTTTCTTTCAAACTGCACCTTCTTGTGGCCGCCTTCTTTAACA +
Preference number: 5 (lower is better)
Translates to: AVGCETRLLVEWILL*FLSNCTFLWPPSLT
Trigger: TGTTAAAGAAGGCGGCCACAAGAAGGTGCAGTTTGAAAGAAAGCACAGCAAGATCCACTCCACCAGGAGCCTGGTCTCACAGCCCACAGC
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000026635.8
CDS CCA 90 bp AAACCGGAAGGACGACCCTCGGCTGAAGAGAACAGGCTTTGGCTTTaGCTTAGGTTCTTCGAAGAGTCTGAAGAAGGCATGGTGCTCCAC +
Preference number: 5 (lower is better)
Translates to: KPEGRPSAEENRLWL*LRFFEESEEGMVLH
Trigger: GTGGAGCACCATGCCTTCTTCAGACTCTTCGAAGAACCTAAGCCAAAGCCAAAGCCTGTTCTCTTCAGCCGAGGGTCGTCCTTCCGGTTT
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000026635.8
CDS-3UTR CAA 90 bp ACTAAAGCGCCCCTGGAGAATGGCAAGACACCGCCCTCCCACCCCCTAGGCCTGGTACGTACTTATTTTTaGCTAAGTGTTCTCTGTCCA +
Preference number: 5 (lower is better)
Translates to: TKAPLENGKTPPSHPLGLVRTYF*LSVLCP
Trigger: TGGACAGAGAACACTTAGCAAAAAATAAGTACGTAC...CAGGCCTAGGGGGTGGGAGGGCGGTGTCTTGCCATTCTCCAGGGGCGCTTTAGT
53% GC, longest homopolymer 5 nt, total homopolymer stretches 14 nt.
Matches the following 1 transcripts:
ENSMUST00000026635.8
CDS CCA 90 bp GCACTTCTGAATTCGGTGCTGTGGGCTGTGAGACCAGGCTCCTGGTaGAGTGGATCTTGCTGTGCTTTCTTTCAAACTGCACCTTCTTGT +
Preference number: 5 (lower is better)
Translates to: ALLNSVLWAVRPGSW*SGSCCAFFQTAPSC
Trigger: ACAAGAAGGTGCAGTTTGAAAGAAAGCACAGCAAGATCCACTCCACCAGGAGCCTGGTCTCACAGCCCACAGCACCGAATTCAGAAGTGC
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000026635.8
CDS CCA 90 bp TTGGCACTTCTGAATTCGGTGCTGTGGGCTGTGAGACCAGGCTCCTaGTGGAGTGGATCTTGCTGTGCTTTCTTTCAAACTGCACCTTCT +
Preference number: 5 (lower is better)
Translates to: LALLNSVLWAVRPGS*WSGSCCAFFQTAPS
Trigger: AGAAGGTGCAGTTTGAAAGAAAGCACAGCAAGATCCACTCCACCAGGAGCCTGGTCTCACAGCCCACAGCACCGAATTCAGAAGTGCCAA
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000026635.8
CDS TCA 90 bp GCTCGTTGTGGAACTTCAAAGGCCTCCTGGGTGTCGTCCAGCATCTaGATTTTGACAGTCATAAGTTTTCCTGAAGGTGTGGGCGGTGGT +
Preference number: 5 (lower is better)
Translates to: ARCGTSKASWVSSSI*ILTVISFPEGVGGG
Trigger: ACCACCGCCCACACCTTCAGGAAAACTTATGACTGTCAAAATTCAGATGCTGGACGACACCCAGGAGGCCTTTGAAGTTCCACAACGAGC
51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000026635.8
ENSMUST00000135010.8
CDS TCA 90 bp GTACAGGTGAGATTCTTTGTGACTCAAGATGTGGGCCCGAGAGGCTaGGCTGGTGGCACTTCGGATCACTTCCATCCACCTTTCAAATGT +
Preference number: 5 (lower is better)
Translates to: VQVRFFVTQDVGPRG*AGGTSDHFHPPFKC
Trigger: ACATTTGAAAGGTGGATGGAAGTGATCCGAAGTGCCACCAGCTCAGCCTCTCGGGCCCACATCTTGAGTCACAAAGAATCTCACCTGTAC
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000026635.8
CDS GCA 90 bp CATGCCATAGAGTGGGAGCTGTCCGTGGACTTTAAACTGATTAGATaGCGTCAGTCCCCGGCTGGTATACAGCAAGACATCGTTGAACAG +
Preference number: 5 (lower is better)
Translates to: HAIEWELSVDFKLIR*RQSPAGIQQDIVEQ
Trigger: CTGTTCAACGATGTCTTGCTGTATACCAGCCGGGGACTGACGGCATCTAATCAGTTTAAAGTCCACGGACAGCTCCCACTCTATGGCATG
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000026635.8
CDS TCA 90 bp CTGGGTGTCGTCCAGCATCTGAATTTTGACAGTCATAAGTTTTCCTaGAGGTGTGGGCGGTGGTTTCTGTCCTCGTTCCAAGGTGCTGAT +
Preference number: 5 (lower is better)
Translates to: LGVVQHLNFDSHKFS*RCGRWFLSSFQGAD
Trigger: ATCAGCACCTTGGAACGAGGACAGAAACCACCGCCCACACCTTCAGGAAAACTTATGACTGTCAAAATTCAGATGCTGGACGACACCCAG
50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000026635.8
ENSMUST00000135010.8
CDS GCA 90 bp GGGGTCACAAGATTGTCAATGCCGATCAGATCTTTCTTGAGCTCATaGAGCTTCTGGAAGTTCTCCATCTTGATCATGGTACCATGCAGC +
Preference number: 5 (lower is better)
Translates to: GVTRLSMPIRSFLSS*SFWKFSILIMVPCS
Trigger: GCTGCATGGTACCATGATCAAGATGGAGAACTTCCAGAAGCTGCATGAGCTCAAGAAAGATCTGATCGGCATTGACAATCTTGTGACCCC
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000026635.8
CDS-3UTR CAA 90 bp GTGGAATGGAGTACTCCACAAGTTGCTTATCTGAGAAAAGTTGAGTCCTACGAAACAGCCAGGTTGATCTaGGTGCCTTCCCTGTCCTTG +
Preference number: 5 (lower is better)
Translates to: VEWSTPQVAYLRKVESYETARLI*VPSLSL
Trigger: CAAGGACAGGGAAGGCACCAAGATCAACCTGGCTGT...TTCGTAGGACTCAACTTTTCTCAGATAAGCAACTTGTGGAGTACTCCATTCCAC
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000026635.8
CDS-3UTR CAA 90 bp CAGAAAACAACCCCACTACATCTTGTAAATAGGAATCACAAACAGCTTGGTCAAACACGTCAGCCTGCCTaGAGCCAAGTCCTGCTTCAC +
Preference number: 5 (lower is better)
Translates to: QKTTPLHLVNRNHKQLGQTRQPA*SQVLLH
Trigger: GTGAAGCAGGACTTGGCTCAAGGCAGGCTGACGTGT...TTGACCAAGCTGTTTGTGATTCCTATTTACAAGATGTAGTGGGGTTGTTTTCTG
47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000026635.8
CDS-3UTR CAA 90 bp CAGAAAACAACCCCACTACATCTTGTAAATAGGAATCACAAACAGCTTGGTCAAAGAAAGCGCTTCCGCTaGAAGCTCAGCTTCCGCACC +
Preference number: 5 (lower is better)
Translates to: QKTTPLHLVNRNHKQLGQRKRFR*KLSFRT
Trigger: GGTGCGGAAGCTGAGCTTCAAGCGGAAGCGCTTTCT...TTGACCAAGCTGTTTGTGATTCCTATTTACAAGATGTAGTGGGGTTGTTTTCTG
47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000026635.8
CDS-3UTR CAA 90 bp GGTACAATAGATACTACTAGAGAATGTGCAGGTTCAAACCAAACCACGGCCTTGAAGAACAGGCAGAAGTaGGTGAATACCACCCACAGC +
Preference number: 5 (lower is better)
Translates to: GTIDTTRECAGSNQTTALKNRQK*VNTTHS
Trigger: GCTGTGGGTGGTATTCACCAACTTCTGCCTGTTCTT...CAAGGCCGTGGTTTGGTTTGAACCTGCACATTCTCTAGTAGTATCTATTGTACC
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000026635.8
CDS GCA 90 bp AATTTCACAACAAATTTAACAACGACGTGCTTCGGTCTTCGAATCTaGTTCACAATGGGCTTCAGGAGATCCAGCCACACCACGATCTTC +
Preference number: 5 (lower is better)
Translates to: NFTTNLTTTCFGLRI*FTMGFRRSSHTTIF
Trigger: GAAGATCGTGGTGTGGCTGGATCTCCTGAAGCCCATTGTGAAGCAGATTCGAAGACCGAAGCACGTCGTTGTTAAATTTGTTGTGAAATT
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000026635.8
ENSMUST00000135010.8
CDS-3UTR CAA 90 bp GTATTGCACTGGGTATCTGCTTCTCCACAGAAAACAACCCCACTACATCTTGTATCAAACTGCACCTTCTaGTGGCCGCCTTCTTTAACA +
Preference number: 5 (lower is better)
Translates to: VLHWVSASPQKTTPLHLVSNCTF*WPPSLT
Trigger: TGTTAAAGAAGGCGGCCACAAGAAGGTGCAGTTTGA...TACAAGATGTAGTGGGGTTGTTTTCTGTGGAGAAGCAGATACCCAGTGCAATAC
46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000026635.8
CDS-3UTR CAA 90 bp AAAGACTTGGAGACAGGTACAATAGATACTACTAGAGAATGTGCAGGTTCAAACGCTCCTCCCTGTGAGTaGATGGACAGCTCTGAAAGG +
Preference number: 5 (lower is better)
Translates to: KDLETGTIDTTRECAGSNAPPCE*MDSSER
Trigger: CCTTTCAGAGCTGTCCATCAACTCACAGGGAGGAGC...GTTTGAACCTGCACATTCTCTAGTAGTATCTATTGTACCTGTCTCCAAGTCTTT
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000026635.8
CDS-3UTR CAA 90 bp AAAGACTTGGAGACAGGTACAATAGATACTACTAGAGAATGTGCAGGTTCAAACTTGTCAGGACTCAGGTaGGGAGACAGGGTCACGTTG +
Preference number: 5 (lower is better)
Translates to: KDLETGTIDTTRECAGSNLSGLR*GDRVTL
Trigger: CAACGTGACCCTGTCTCCCAACCTGAGTCCTGACAA...GTTTGAACCTGCACATTCTCTAGTAGTATCTATTGTACCTGTCTCCAAGTCTTT
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000026635.8
CDS-3UTR CAA 90 bp GGTACAATAGATACTACTAGAGAATGTGCAGGTTCAAACCAAACCACGGCCTTGTACAGCAAGACATCGTaGAACAGGAAGAACATGCGC +
Preference number: 5 (lower is better)
Translates to: GTIDTTRECAGSNQTTALYSKTS*NRKNMR
Trigger: GCGCATGTTCTTCCTGTTCAACGATGTCTTGCTGTA...CAAGGCCGTGGTTTGGTTTGAACCTGCACATTCTCTAGTAGTATCTATTGTACC
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000026635.8
CDS CCA 90 bp TCCCACAGGGCAAGTCGTTGCTCAATTTCCTTCAGAAAATTGGTATaGAACTTGTGCAAAGGTTCAAAATTTGGGAATATGAGACTCTTC +
Preference number: 5 (lower is better)
Translates to: SHRASRCSISFRKLV*NLCKGSKFGNMRLF
Trigger: GAAGAGTCTCATATTCCCAAATTTTGAACCTTTGCACAAGTTCCATACCAATTTTCTGAAGGAAATTGAGCAACGACTTGCCCTGTGGGA
41% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000026635.8
CDS GCA 90 bp GCAAGTCGTTGCTCAATTTCCTTCAGAAAATTGGTATGGAACTTGTaGAAAGGTTCAAAATTTGGGAATATGAGACTCTTCAAGGCTTCG +
Preference number: 5 (lower is better)
Translates to: ASRCSISFRKLVWNL*KGSKFGNMRLFKAS
Trigger: CGAAGCCTTGAAGAGTCTCATATTCCCAAATTTTGAACCTTTGCACAAGTTCCATACCAATTTTCTGAAGGAAATTGAGCAACGACTTGC
40% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000026635.8
CDS-3UTR CAA 90 bp AAAGACTTGGAGACAGGTACAATAGATACTACTAGAGAATGTGCAGGTTCAAACAACATAATCAAGAACTaGCTTCTGAGTCCGACCACT +
Preference number: 5 (lower is better)
Translates to: KDLETGTIDTTRECAGSNNIIKN*LLSPTT
Trigger: AGTGGTCGGACTCAGAAGCAAGTTCTTGATTATGTT...GTTTGAACCTGCACATTCTCTAGTAGTATCTATTGTACCTGTCTCCAAGTCTTT
40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000026635.8
CDS-3UTR CAA 90 bp AAAACAACCCCACTACATCTTGTAAATAGGAATCACAAACAGCTTGGTCAACTTCAGCCATTGCTGTTCTaGAACTTTCTCAGCAAGTTC +
Preference number: 5 (lower is better)
Translates to: KTTPLHLVNRNHKQLGQLQPLLF*NFLSKF
Trigger: GAACTTGCTGAGAAAGTTCAAGAACAGCAATGGCTG...AAGTTGACCAAGCTGTTTGTGATTCCTATTTACAAGATGTAGTGGGGTTGTTTT
40% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000026635.8
CDS TCA 72 bp CGATGCCAGCACACGTGCACCATCGTGTTGCCACGGTaGGGGGCCTGGCGCTCCAGCGATGTCCGAGAGGCA +
Preference number: 6 (lower is better)
Translates to: RCQHTCTIVLPR*GAWRSSDVREA
Trigger: TGCCTCTCGGACATCGCTGGAGCGCCAGGCCCCTCACCGTGGCAACACGATGGTGCACGTGTGCTGGCATCG
67% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000026635.8
CDS CCA 72 bp GGAGCCTGTGCTTGGCTGCGGGGGCTGAGGGTTACTTaGCCGGATGCCGTCCTTGCCACCCTCTTCCTCCTC +
Preference number: 6 (lower is better)
Translates to: GACAWLRGLRVT*PDAVLATLFLL
Trigger: GAGGAGGAAGAGGGTGGCAAGGACGGCATCCGGCCAAGTAACCCTCAGCCCCCGCAGCCAAGCACAGGCTCC
67% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000026635.8
CDS CCA 72 bp CGGCCCTCTTCTTCGTCGTCGGTCCTTGGGCACGCTTaGTCGTTCAGGAGCGGGCTGATCAGGGGAGAGGCC +
Preference number: 6 (lower is better)
Translates to: RPSSSSSVLGHA*SFRSGLIRGEA
Trigger: GGCCTCTCCCCTGATCAGCCCGCTCCTGAACGACCAAGCGTGCCCAAGGACCGACGACGAAGAAGAGGGCCG
67% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000026635.8
CDS CAA 72 bp CCGGCCCTCTTCTTCGTCGTCGGTCCTTGGGCACGCTaGGTCGTTCAGGAGCGGGCTGATCAGGGGAGAGGC +
Preference number: 6 (lower is better)
Translates to: PALFFVVGPWAR*VVQERADQGRG
Trigger: GCCTCTCCCCTGATCAGCCCGCTCCTGAACGACCAAGCGTGCCCAAGGACCGACGACGAAGAAGAGGGCCGG
67% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000026635.8
CDS CCA 72 bp CGGCACCACGGTGGTTCCATCTGCAGCTTTGCTCCCTaGAGGGCTCTTAGGGAGGGCGGGGCTTTGGTGAGG +
Preference number: 6 (lower is better)
Translates to: RHHGGSICSFAP*RALREGGALVR
Trigger: CCTCACCAAAGCCCCGCCCTCCCTAAGAGCCCTCCAGGGAGCAAAGCTGCAGATGGAACCACCGTGGTGCCG
65% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000026635.8
CDS GCA 72 bp ATCTCTGACCGGGAACTGGCAGCCACGATGATAGATTaGCGCTGGCCCCGCAGGGTCAGGCAGTGGGGCACA +
Preference number: 6 (lower is better)
Translates to: ISDRELAATMID*RWPRRVRQWGT
Trigger: TGTGCCCCACTGCCTGACCCTGCGGGGCCAGCGGCAATCTATCATCGTGGCTGCCAGTTCCCGGTCAGAGAT
64% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000026635.8
CDS CCA 72 bp TCAGGGGAGAGGCCTGCTTGTTGTCAGGACTCAGGTTaGGAGACAGGGTCACGTTGGCTGGGGCGGCTCCTC +
Preference number: 6 (lower is better)
Translates to: SGERPACCQDSG*ETGSRWLGRLL
Trigger: GAGGAGCCGCCCCAGCCAACGTGACCCTGTCTCCCAACCTGAGTCCTGACAACAAGCAGGCCTCTCCCCTGA
64% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000026635.8
CDS CAA 90 bp GCTTGGTCGTTCAGGAGCGGGCTGATCAGGGGAGAGGCCTGCTTGTaGTCAGGACTCAGGTTGGGAGACAGGGTCACGTTGGCTGGGGCG +
Preference number: 6 (lower is better)
Translates to: AWSFRSGLIRGEACL*SGLRLGDRVTLAGA
Trigger: CGCCCCAGCCAACGTGACCCTGTCTCCCAACCTGAGTCCTGACAACAAGCAGGCCTCTCCCCTGATCAGCCCGCTCCTGAACGACCAAGC
63% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000026635.8
CDS CAA 90 bp CACGCTTGGTCGTTCAGGAGCGGGCTGATCAGGGGAGAGGCCTGCTaGTTGTCAGGACTCAGGTTGGGAGACAGGGTCACGTTGGCTGGG +
Preference number: 6 (lower is better)
Translates to: HAWSFRSGLIRGEAC*LSGLRLGDRVTLAG
Trigger: CCCAGCCAACGTGACCCTGTCTCCCAACCTGAGTCCTGACAACAAGCAGGCCTCTCCCCTGATCAGCCCGCTCCTGAACGACCAAGCGTG
62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000026635.8
CDS CAA 90 bp TCTCTTTCGCCGGCCCTCTTCTTCGTCGTCGGTCCTTGGGCACGCTaGGTCGTTCAGGAGCGGGCTGATCAGGGGAGAGGCCTGCTTGTT +
Preference number: 6 (lower is better)
Translates to: SLSPALFFVVGPWAR*VVQERADQGRGLLV
Trigger: AACAAGCAGGCCTCTCCCCTGATCAGCCCGCTCCTGAACGACCAAGCGTGCCCAAGGACCGACGACGAAGAAGAGGGCCGGCGAAAGAGA
62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000026635.8
CDS TCA 72 bp CGGTCCTTGGGCACGCTTGGTCGTTCAGGAGCGGGCTaGTCAGGGGAGAGGCCTGCTTGTTGTCAGGACTCA +
Preference number: 6 (lower is better)
Translates to: RSLGTLGRSGAG*SGERPACCQDS
Trigger: TGAGTCCTGACAACAAGCAGGCCTCTCCCCTGATCAGCCCGCTCCTGAACGACCAAGCGTGCCCAAGGACCG
62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000026635.8
CDS TCA 72 bp CTCCAGCGATGTCCGAGAGGCACTCAGGTCATCCTCTaGCTCCTGGTCAGCCGCTGTGGCTTCATCCGGGGA +
Preference number: 6 (lower is better)
Translates to: LQRCPRGTQVIL*LLVSRCGFIRG
Trigger: TCCCCGGATGAAGCCACAGCGGCTGACCAGGAGTCAGAGGATGACCTGAGTGCCTCTCGGACATCGCTGGAG
62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000026635.8
CDS GCA 72 bp CTCTTCTTCCTCAGGCGGCACCACGGTGGTTCCATCTaGAGCTTTGCTCCCTGGAGGGCTCTTAGGGAGGGC +
Preference number: 6 (lower is better)
Translates to: LFFLRRHHGGSI*SFAPWRALREG
Trigger: GCCCTCCCTAAGAGCCCTCCAGGGAGCAAAGCTGCAGATGGAACCACCGTGGTGCCGCCTGAGGAAGAAGAG
62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000026635.8
CDS CCA 72 bp TCTCTTTCGCCGGCCCTCTTCTTCGTCGTCGGTCCTTaGGCACGCTTGGTCGTTCAGGAGCGGGCTGATCAG +
Preference number: 6 (lower is better)
Translates to: SLSPALFFVVGP*ARLVVQERADQ
Trigger: CTGATCAGCCCGCTCCTGAACGACCAAGCGTGCCCAAGGACCGACGACGAAGAAGAGGGCCGGCGAAAGAGA
62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000026635.8
CDS CCA 72 bp CAGCGCAGCTCTGCAGTCCCTGAAGTCGGCGTGGTTTaGTGGGTGGTGCTTGCACAGCCTCTCCAGGACATG +
Preference number: 6 (lower is better)
Translates to: QRSSAVPEVGVV*WVVLAQPLQDM
Trigger: CATGTCCTGGAGAGGCTGTGCAAGCACCACCCACCAAACCACGCCGACTTCAGGGACTGCAGAGCTGCGCTG
62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000026635.8
CDS GCA 72 bp TGGTCGTTCAGGAGCGGGCTGATCAGGGGAGAGGCCTaGTTGTTGTCAGGACTCAGGTTGGGAGACAGGGTC +
Preference number: 6 (lower is better)
Translates to: WSFRSGLIRGEA*LLSGLRLGDRV
Trigger: GACCCTGTCTCCCAACCTGAGTCCTGACAACAAGCAGGCCTCTCCCCTGATCAGCCCGCTCCTGAACGACCA
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000026635.8
CDS CCA 72 bp CGCAGCTCTGCAGTCCCTGAAGTCGGCGTGGTTTGGTaGGTGGTGCTTGCACAGCCTCTCCAGGACATGCTT +
Preference number: 6 (lower is better)
Translates to: RSSAVPEVGVVW*VVLAQPLQDML
Trigger: AAGCATGTCCTGGAGAGGCTGTGCAAGCACCACCCACCAAACCACGCCGACTTCAGGGACTGCAGAGCTGCG
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000026635.8
CDS CAA 72 bp TCGTTCAGGAGCGGGCTGATCAGGGGAGAGGCCTGCTaGTTGTCAGGACTCAGGTTGGGAGACAGGGTCACG +
Preference number: 6 (lower is better)
Translates to: SFRSGLIRGEAC*LSGLRLGDRVT
Trigger: CGTGACCCTGTCTCCCAACCTGAGTCCTGACAACAAGCAGGCCTCTCCCCTGATCAGCCCGCTCCTGAACGA
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000026635.8
CDS CAA 90 bp GAGGCCTGCTTGTTGTCAGGACTCAGGTTGGGAGACAGGGTCACGTaGGCTGGGGCGGCTCCTCCCTGTGAGTTGATGGACAGCTCTGAA +
Preference number: 6 (lower is better)
Translates to: EACLLSGLRLGDRVT*AGAAPPCELMDSSE
Trigger: TTCAGAGCTGTCCATCAACTCACAGGGAGGAGCCGCCCCAGCCAACGTGACCCTGTCTCCCAACCTGAGTCCTGACAACAAGCAGGCCTC
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000026635.8
CDS TCA 72 bp CTCCCTGGAGGGCTCTTAGGGAGGGCGGGGCTTTGGTaGGGTCCCAACTCCAAGGTACAGGCTTTTGTTTCC +
Preference number: 6 (lower is better)
Translates to: LPGGLLGRAGLW*GPNSKVQAFVS
Trigger: GGAAACAAAAGCCTGTACCTTGGAGTTGGGACCTCACCAAAGCCCCGCCCTCCCTAAGAGCCCTCCAGGGAG
60% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000026635.8
CDS CCA 72 bp CCGTACATCTCTAGCCGACGGGCCACCTCTAGGAGCTaGAAATCTGACTCTGCCGGGGTTTGTCCAACGTGG +
Preference number: 6 (lower is better)
Translates to: PYISSRRATSRS*KSDSAGVCPTW
Trigger: CCACGTTGGACAAACCCCGGCAGAGTCAGATTTCCAGCTCCTAGAGGTGGCCCGTCGGCTAGAGATGTACGG
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000026635.8
CDS CCA 72 bp GATGTCCGAGAGGCACTCAGGTCATCCTCTGACTCCTaGTCAGCCGCTGTGGCTTCATCCGGGGACTTGTTG +
Preference number: 6 (lower is better)
Translates to: DVREALRSSSDS*SAAVASSGDLL
Trigger: CAACAAGTCCCCGGATGAAGCCACAGCGGCTGACCAGGAGTCAGAGGATGACCTGAGTGCCTCTCGGACATC
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000026635.8
CDS CAA 72 bp GCACACGGCGTCAAACAGAACCTTCCCTGGCGCTCGTaGTGGAACTTCAAAGGCCTCCTGGGTGTCGTCCAG +
Preference number: 6 (lower is better)
Translates to: AHGVKQNLPWRS*WNFKGLLGVVQ
Trigger: CTGGACGACACCCAGGAGGCCTTTGAAGTTCCACAACGAGCGCCAGGGAAGGTTCTGTTTGACGCCGTGTGC
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000026635.8
ENSMUST00000135010.8
CDS CAA 72 bp GAGAGCGGCACTGGTGTCGTTACACGTCAGCCTGCCTaGAGCCAAGTCCTGCTTCACCTGCAGAGCGAACAG +
Preference number: 6 (lower is better)
Translates to: ESGTGVVTRQPA*SQVLLHLQSEQ
Trigger: CTGTTCGCTCTGCAGGTGAAGCAGGACTTGGCTCAAGGCAGGCTGACGTGTAACGACACCAGTGCCGCTCTC
60% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000026635.8
ENSMUST00000135010.8
CDS CAA 72 bp TTGTTGTCAGGACTCAGGTTGGGAGACAGGGTCACGTaGGCTGGGGCGGCTCCTCCCTGTGAGTTGATGGAC +
Preference number: 6 (lower is better)
Translates to: LLSGLRLGDRVT*AGAAPPCELMD
Trigger: GTCCATCAACTCACAGGGAGGAGCCGCCCCAGCCAACGTGACCCTGTCTCCCAACCTGAGTCCTGACAACAA
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000026635.8
CDS CAA 72 bp TTCAGGAGCGGGCTGATCAGGGGAGAGGCCTGCTTGTaGTCAGGACTCAGGTTGGGAGACAGGGTCACGTTG +
Preference number: 6 (lower is better)
Translates to: FRSGLIRGEACL*SGLRLGDRVTL
Trigger: CAACGTGACCCTGTCTCCCAACCTGAGTCCTGACAACAAGCAGGCCTCTCCCCTGATCAGCCCGCTCCTGAA
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000026635.8
CDS TCA 72 bp GGAACTCCAGGCCGAAGTAGTCGCCCTCCACAAGGTTaGGGTGGTTGCACACGGCGTCAAACAGAACCTTCC +
Preference number: 6 (lower is better)
Translates to: GTPGRSSRPPQG*GGCTRRQTEPS
Trigger: GGAAGGTTCTGTTTGACGCCGTGTGCAACCACCTCAACCTTGTGGAGGGCGACTACTTCGGCCTGGAGTTCC
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000026635.8
ENSMUST00000135010.8
CDS GCA 72 bp TCAAGAGAGCGGCACTGGTGTCGTTACACGTCAGCCTaGCTTGAGCCAAGTCCTGCTTCACCTGCAGAGCGA +
Preference number: 6 (lower is better)
Translates to: SRERHWCRYTSA*LEPSPASPAER
Trigger: TCGCTCTGCAGGTGAAGCAGGACTTGGCTCAAGGCAGGCTGACGTGTAACGACACCAGTGCCGCTCTCTTGA
58% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000026635.8
ENSMUST00000135010.8
CDS GCA 72 bp GGCAAGGAGCTCGGGGGTGGGTCCATTGCTTTTCTCTaGCAGGTCAATGGCCATCTGGATGTCCTCCATCCA +
Preference number: 6 (lower is better)
Translates to: GKELGGGSIAFL*QVNGHLDVLHP
Trigger: TGGATGGAGGACATCCAGATGGCCATTGACCTGGCAGAGAAAAGCAATGGACCCACCCCCGAGCTCCTTGCC
58% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000026635.8
CDS CCA 72 bp CACGGCGTCAAACAGAACCTTCCCTGGCGCTCGTTGTaGAACTTCAAAGGCCTCCTGGGTGTCGTCCAGCAT +
Preference number: 6 (lower is better)
Translates to: HGVKQNLPWRSL*NFKGLLGVVQH
Trigger: ATGCTGGACGACACCCAGGAGGCCTTTGAAGTTCCACAACGAGCGCCAGGGAAGGTTCTGTTTGACGCCGTG
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000026635.8
ENSMUST00000135010.8
CDS CCA 72 bp GAGGTGGTTGCACACGGCGTCAAACAGAACCTTCCCTaGCGCTCGTTGTGGAACTTCAAAGGCCTCCTGGGT +
Preference number: 6 (lower is better)
Translates to: EVVAHGVKQNLP*RSLWNFKGLLG
Trigger: ACCCAGGAGGCCTTTGAAGTTCCACAACGAGCGCCAGGGAAGGTTCTGTTTGACGCCGTGTGCAACCACCTC
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000026635.8
ENSMUST00000135010.8
CDS CAA 72 bp GGCTTTGGTGAGGTCCCAACTCCAAGGTACAGGCTTTaGTTTCCTTCGCTTGCTGGCAGCTCTGGCCACCCG +
Preference number: 6 (lower is better)
Translates to: GFGEVPTPRYRL*FPSLAGSSGHP
Trigger: CGGGTGGCCAGAGCTGCCAGCAAGCGAAGGAAACAAAAGCCTGTACCTTGGAGTTGGGACCTCACCAAAGCC
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000026635.8
CDS TCA 72 bp GCAAGTTCCCAGAGAGCTGGTTCTCCACAGCAATGCTaGAGTCCACCATGGAGACACTGGTGCTGCGATGCC +
Preference number: 6 (lower is better)
Translates to: ASSQRAGSPQQC*SPPWRHWCCDA
Trigger: GGCATCGCAGCACCAGTGTCTCCATGGTGGACTTCAGCATTGCTGTGGAGAACCAGCTCTCTGGGAACTTGC
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000026635.8
CDS CAA 90 bp TTCGGTGCTGTGGGCTGTGAGACCAGGCTCCTGGTGGAGTGGATCTaGCTGTGCTTTCTTTCAAACTGCACCTTCTTGTGGCCGCCTTCT +
Preference number: 6 (lower is better)
Translates to: FGAVGCETRLLVEWI*LCFLSNCTFLWPPS
Trigger: AGAAGGCGGCCACAAGAAGGTGCAGTTTGAAAGAAAGCACAGCAAGATCCACTCCACCAGGAGCCTGGTCTCACAGCCCACAGCACCGAA
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000026635.8
CDS CAA 90 bp TTGGTGAGGTCCCAACTCCAAGGTACAGGCTTTTGTTTCCTTCGCTaGCTGGCAGCTCTGGCCACCCGGAGACTCGGTACCTTCTCCAAA +
Preference number: 6 (lower is better)
Translates to: LVRSQLQGTGFCFLR*LAALATRRLGTFSK
Trigger: TTTGGAGAAGGTACCGAGTCTCCGGGTGGCCAGAGCTGCCAGCAAGCGAAGGAAACAAAAGCCTGTACCTTGGAGTTGGGACCTCACCAA
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000026635.8
CDS CCA 72 bp TCTGACTCTGCCGGGGTTTGTCCAACGTGGCTGTGGTaGAACTCCATGATTCTGTCTTCCAGCGCATCCTGT +
Preference number: 6 (lower is better)
Translates to: SDSAGVCPTWLW*NSMILSSSASC
Trigger: ACAGGATGCGCTGGAAGACAGAATCATGGAGTTCCACCACAGCCACGTTGGACAAACCCCGGCAGAGTCAGA
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000026635.8
ENSMUST00000135010.8
CDS CCA 72 bp GTACAGGCTTTTGTTTCCTTCGCTTGCTGGCAGCTCTaGCCACCCGGAGACTCGGTACCTTCTCCAAACGTA +
Preference number: 6 (lower is better)
Translates to: VQAFVSFACWQL*PPGDSVPSPNV
Trigger: TACGTTTGGAGAAGGTACCGAGTCTCCGGGTGGCCAGAGCTGCCAGCAAGCGAAGGAAACAAAAGCCTGTAC
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000026635.8
CDS CAA 72 bp ACTAGAATTCCAGTGTTGGCGACAGCCAGGTTGATCTaGGTGCCTTCCCTGTCCTTGGCAGGGTGTAACCGG +
Preference number: 6 (lower is better)
Translates to: TRIPVLATARLI*VPSLSLAGCNR
Trigger: CCGGTTACACCCTGCCAAGGACAGGGAAGGCACCAAGATCAACCTGGCTGTCGCCAACACTGGAATTCTAGT
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000026635.8
CDS TCA 72 bp CCCGATTCTTTGGTAATCTCCTCTGACGTGGGCATTTaGGCGGCCTTCCCACAGGGCAAGTCGTTGCTCAAT +
Preference number: 6 (lower is better)
Translates to: PDSLVISSDVGI*AAFPQGKSLLN
Trigger: ATTGAGCAACGACTTGCCCTGTGGGAAGGCCGCTCAAATGCCCACGTCAGAGGAGATTACCAAAGAATCGGG
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000026635.8
CDS TCA 72 bp AGATTCTTTGTGACTCAAGATGTGGGCCCGAGAGGCTaGGCTGGTGGCACTTCGGATCACTTCCATCCACCT +
Preference number: 6 (lower is better)
Translates to: RFFVTQDVGPRG*AGGTSDHFHPP
Trigger: AGGTGGATGGAAGTGATCCGAAGTGCCACCAGCTCAGCCTCTCGGGCCCACATCTTGAGTCACAAAGAATCT
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000026635.8
CDS GCA 72 bp TGTGAGACCAGGCTCCTGGTGGAGTGGATCTTGCTGTaGTTTCTTTCAAACTGCACCTTCTTGTGGCCGCCT +
Preference number: 6 (lower is better)
Translates to: CETRLLVEWILL*FLSNCTFLWPP
Trigger: AGGCGGCCACAAGAAGGTGCAGTTTGAAAGAAAGCACAGCAAGATCCACTCCACCAGGAGCCTGGTCTCACA
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000026635.8
CDS GCA 72 bp GAAGTTCTCCATCTTGATCATGGTACCATGCAGCTGTaGCACCATCTCTGTGATCTCCGCCAGCGCAGCTCT +
Preference number: 6 (lower is better)
Translates to: EVLHLDHGTMQL*HHLCDLRQRSS
Trigger: AGAGCTGCGCTGGCGGAGATCACAGAGATGGTGGCACAGCTGCATGGTACCATGATCAAGATGGAGAACTTC
54% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000026635.8
CDS CCA 72 bp CAACGACGTGCTTCGGTCTTCGAATCTGCTTCACAATaGGCTTCAGGAGATCCAGCCACACCACGATCTTCC +
Preference number: 6 (lower is better)
Translates to: QRRASVFESASQ*ASGDPATPRSS
Trigger: GGAAGATCGTGGTGTGGCTGGATCTCCTGAAGCCCATTGTGAAGCAGATTCGAAGACCGAAGCACGTCGTTG
54% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000026635.8
ENSMUST00000135010.8
CDS CCA 72 bp CCGACTGTACAATGTGTGAGATCAAGAGAGCGGCACTaGTGTCGTTACACGTCAGCCTGCCTTGAGCCAAGT +
Preference number: 6 (lower is better)
Translates to: PTVQCVRSRERH*CRYTSACLEPS
Trigger: ACTTGGCTCAAGGCAGGCTGACGTGTAACGACACCAGTGCCGCTCTCTTGATCTCACACATTGTACAGTCGG
54% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000026635.8
ENSMUST00000135010.8
CDS CCA 72 bp AGCTGGAAATCTGACTCTGCCGGGGTTTGTCCAACGTaGCTGTGGTGGAACTCCATGATTCTGTCTTCCAGC +
Preference number: 6 (lower is better)
Translates to: SWKSDSAGVCPT*LWWNSMILSSS
Trigger: GCTGGAAGACAGAATCATGGAGTTCCACCACAGCCACGTTGGACAAACCCCGGCAGAGTCAGATTTCCAGCT
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000026635.8
CDS CCA 72 bp GGAGACTTCCTTAGCAATGTAGTACGCCTTGTCGGTTaGGAATCTCTTTCGCCGGCCCTCTTCTTCGTCGTC +
Preference number: 6 (lower is better)
Translates to: GDFLSNVVRLVG*ESLSPALFFVV
Trigger: GACGACGAAGAAGAGGGCCGGCGAAAGAGATTCCCAACCGACAAGGCGTACTACATTGCTAAGGAAGTCTCC
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000026635.8
CDS GCA 72 bp AGCTTCTGGAAGTTCTCCATCTTGATCATGGTACCATaGAGCTGTGCCACCATCTCTGTGATCTCCGCCAGC +
Preference number: 6 (lower is better)
Translates to: SFWKFSILIMVP*SCATISVISAS
Trigger: GCTGGCGGAGATCACAGAGATGGTGGCACAGCTGCATGGTACCATGATCAAGATGGAGAACTTCCAGAAGCT
53% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000026635.8
CDS GCA 72 bp GAGTGGGAGCTGTCCGTGGACTTTAAACTGATTAGATaGCGTCAGTCCCCGGCTGGTATACAGCAAGACATC +
Preference number: 6 (lower is better)
Translates to: EWELSVDFKLIR*RQSPAGIQQDI
Trigger: GATGTCTTGCTGTATACCAGCCGGGGACTGACGGCATCTAATCAGTTTAAAGTCCACGGACAGCTCCCACTC
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000026635.8
CDS CCA 72 bp CCGGAAGGACGACCCTCGGCTGAAGAGAACAGGCTTTaGCTTTGGCTTAGGTTCTTCGAAGAGTCTGAAGAA +
Preference number: 6 (lower is better)
Translates to: PEGRPSAEENRL*LWLRFFEESEE
Trigger: TTCTTCAGACTCTTCGAAGAACCTAAGCCAAAGCCAAAGCCTGTTCTCTTCAGCCGAGGGTCGTCCTTCCGG
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000026635.8
CDS CCA 72 bp AATTCGGTGCTGTGGGCTGTGAGACCAGGCTCCTGGTaGAGTGGATCTTGCTGTGCTTTCTTTCAAACTGCA +
Preference number: 6 (lower is better)
Translates to: NSVLWAVRPGSW*SGSCCAFFQTA
Trigger: TGCAGTTTGAAAGAAAGCACAGCAAGATCCACTCCACCAGGAGCCTGGTCTCACAGCCCACAGCACCGAATT
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000026635.8
CDS CCA 72 bp CTGAATTCGGTGCTGTGGGCTGTGAGACCAGGCTCCTaGTGGAGTGGATCTTGCTGTGCTTTCTTTCAAACT +
Preference number: 6 (lower is better)
Translates to: LNSVLWAVRPGS*WSGSCCAFFQT
Trigger: AGTTTGAAAGAAAGCACAGCAAGATCCACTCCACCAGGAGCCTGGTCTCACAGCCCACAGCACCGAATTCAG
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000026635.8
CDS CAA 72 bp CCCAGGCGGATGAACTCCCTTCCTGGGGTCACAAGATaGTCAATGCCGATCAGATCTTTCTTGAGCTCATGC +
Preference number: 6 (lower is better)
Translates to: PRRMNSLPGVTR*SMPIRSFLSSC
Trigger: GCATGAGCTCAAGAAAGATCTGATCGGCATTGACAATCTTGTGACCCCAGGAAGGGAGTTCATCCGCCTGGG
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000026635.8
CDS CAA 90 bp AACTCCAAGGTGTCCTGGTATGAGCTATTCACGTCAGGTCTGAGCTaGATAAGAAAGCGCTTCCGCTTGAAGCTCAGCTTCCGCACCTTG +
Preference number: 6 (lower is better)
Translates to: NSKVSWYELFTSGLS*IRKRFRLKLSFRTL
Trigger: CAAGGTGCGGAAGCTGAGCTTCAAGCGGAAGCGCTTTCTTATCAAGCTCAGACCTGACGTGAATAGCTCATACCAGGACACCTTGGAGTT
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000026635.8
CDS TCA 72 bp TCGGCCGGCCATCAGGAACTCCAAGGTGTCCTGGTATaGGCTATTCACGTCAGGTCTGAGCTTGATAAGAAA +
Preference number: 6 (lower is better)
Translates to: SAGHQELQGVLV*AIHVRSELDKK
Trigger: TTTCTTATCAAGCTCAGACCTGACGTGAATAGCTCATACCAGGACACCTTGGAGTTCCTGATGGCCGGCCGA
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000026635.8
CDS CCA 72 bp CTCCTCCTCACTCTCCTCGATCGTCATGCCATAGAGTaGGAGCTGTCCGTGGACTTTAAACTGATTAGATGC +
Preference number: 6 (lower is better)
Translates to: LLLTLLDRHAIE*ELSVDFKLIRC
Trigger: GCATCTAATCAGTTTAAAGTCCACGGACAGCTCCCACTCTATGGCATGACGATCGAGGAGAGTGAGGAGGAG
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000026635.8
CDS CAA 90 bp AAACTGCACCTTCTTGTGGCCGCCTTCTTTAACATAATCAAGAACTaGCTTCTGAGTCCGACCACTAAACCGGAAGGACGACCCTCGGCT +
Preference number: 6 (lower is better)
Translates to: KLHLLVAAFFNIIKN*LLSPTTKPEGRPSA
Trigger: AGCCGAGGGTCGTCCTTCCGGTTTAGTGGTCGGACTCAGAAGCAAGTTCTTGATTATGTTAAAGAAGGCGGCCACAAGAAGGTGCAGTTT
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000026635.8
CDS TCA 72 bp TTCATCGAAATCCCCAATCTCCGACTGTACAATGTGTaGGATCAAGAGAGCGGCACTGGTGTCGTTACACGT +
Preference number: 6 (lower is better)
Translates to: FIEIPNLRLYNV*DQESGTGVVTR
Trigger: ACGTGTAACGACACCAGTGCCGCTCTCTTGATCTCACACATTGTACAGTCGGAGATTGGGGATTTCGATGAA
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000026635.8
ENSMUST00000135010.8
CDS GCA 72 bp ACAAATTTAACAACGACGTGCTTCGGTCTTCGAATCTaGTTCACAATGGGCTTCAGGAGATCCAGCCACACC +
Preference number: 6 (lower is better)
Translates to: TNLTTTCFGLRI*FTMGFRRSSHT
Trigger: GGTGTGGCTGGATCTCCTGAAGCCCATTGTGAAGCAGATTCGAAGACCGAAGCACGTCGTTGTTAAATTTGT
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000026635.8
ENSMUST00000135010.8
CDS CAA 72 bp TTCTTGAGCTCATGCAGCTTCTGGAAGTTCTCCATCTaGATCATGGTACCATGCAGCTGTGCCACCATCTCT +
Preference number: 6 (lower is better)
Translates to: FLSSCSFWKFSI*IMVPCSCATIS
Trigger: AGAGATGGTGGCACAGCTGCATGGTACCATGATCAAGATGGAGAACTTCCAGAAGCTGCATGAGCTCAAGAA
49% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000026635.8
CDS CAA 90 bp ATCAGATCTTTCTTGAGCTCATGCAGCTTCTGGAAGTTCTCCATCTaGATCATGGTACCATGCAGCTGTGCCACCATCTCTGTGATCTCC +
Preference number: 6 (lower is better)
Translates to: IRSFLSSCSFWKFSI*IMVPCSCATISVIS
Trigger: GGAGATCACAGAGATGGTGGCACAGCTGCATGGTACCATGATCAAGATGGAGAACTTCCAGAAGCTGCATGAGCTCAAGAAAGATCTGAT
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000026635.8
CDS TCA 72 bp GTCCAGCATCTGAATTTTGACAGTCATAAGTTTTCCTaGAGGTGTGGGCGGTGGTTTCTGTCCTCGTTCCAA +
Preference number: 6 (lower is better)
Translates to: VQHLNFDSHKFS*RCGRWFLSSFQ
Trigger: TTGGAACGAGGACAGAAACCACCGCCCACACCTTCAGGAAAACTTATGACTGTCAAAATTCAGATGCTGGAC
47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000026635.8
ENSMUST00000135010.8
CDS TCA 72 bp GGAACTTCAAAGGCCTCCTGGGTGTCGTCCAGCATCTaGATTTTGACAGTCATAAGTTTTCCTGAAGGTGTG +
Preference number: 6 (lower is better)
Translates to: GTSKASWVSSSI*ILTVISFPEGV
Trigger: CACACCTTCAGGAAAACTTATGACTGTCAAAATTCAGATGCTGGACGACACCCAGGAGGCCTTTGAAGTTCC
47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000026635.8
ENSMUST00000135010.8
CDS CAA 72 bp CTTCTTGTGGCCGCCTTCTTTAACATAATCAAGAACTaGCTTCTGAGTCCGACCACTAAACCGGAAGGACGA +
Preference number: 6 (lower is better)
Translates to: LLVAAFFNIIKN*LLSPTTKPEGR
Trigger: TCGTCCTTCCGGTTTAGTGGTCGGACTCAGAAGCAAGTTCTTGATTATGTTAAAGAAGGCGGCCACAAGAAG
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000026635.8
CDS CAA 90 bp CGGCCTTCCCACAGGGCAAGTCGTTGCTCAATTTCCTTCAGAAAATaGGTATGGAACTTGTGCAAAGGTTCAAAATTTGGGAATATGAGA +
Preference number: 6 (lower is better)
Translates to: RPSHRASRCSISFRK*VWNLCKGSKFGNMR
Trigger: TCTCATATTCCCAAATTTTGAACCTTTGCACAAGTTCCATACCAATTTTCTGAAGGAAATTGAGCAACGACTTGCCCTGTGGGAAGGCCG
43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000026635.8
CDS TCA 72 bp TATGGAACTTGTGCAAAGGTTCAAAATTTGGGAATATaGGACTCTTCAAGGCTTCGGGCATGGAGTCCTCTT +
Preference number: 6 (lower is better)
Translates to: YGTCAKVQNLGI*DSSRLRAWSPL
Trigger: AAGAGGACTCCATGCCCGAAGCCTTGAAGAGTCTCATATTCCCAAATTTTGAACCTTTGCACAAGTTCCATA
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000026635.8
CDS GCA 72 bp AGATTGTCAATGCCGATCAGATCTTTCTTGAGCTCATaGAGCTTCTGGAAGTTCTCCATCTTGATCATGGTA +
Preference number: 6 (lower is better)
Translates to: RLSMPIRSFLSS*SFWKFSILIMV
Trigger: TACCATGATCAAGATGGAGAACTTCCAGAAGCTGCATGAGCTCAAGAAAGATCTGATCGGCATTGACAATCT
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000026635.8
CDS CAA 90 bp AGGGCAAGTCGTTGCTCAATTTCCTTCAGAAAATTGGTATGGAACTaGTGCAAAGGTTCAAAATTTGGGAATATGAGACTCTTCAAGGCT +
Preference number: 6 (lower is better)
Translates to: RASRCSISFRKLVWN*CKGSKFGNMRLFKA
Trigger: AGCCTTGAAGAGTCTCATATTCCCAAATTTTGAACCTTTGCACAAGTTCCATACCAATTTTCTGAAGGAAATTGAGCAACGACTTGCCCT
40% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000026635.8